Multiple sequence alignment - TraesCS1D01G348500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G348500 chr1D 100.000 3116 0 0 1 3116 435275491 435272376 0.000000e+00 5755
1 TraesCS1D01G348500 chr1D 87.535 722 59 17 1005 1708 452620806 452621514 0.000000e+00 806
2 TraesCS1D01G348500 chr1D 94.531 512 21 5 2157 2664 383939325 383938817 0.000000e+00 784
3 TraesCS1D01G348500 chr1D 85.612 139 17 2 2009 2145 473660280 473660143 3.240000e-30 143
4 TraesCS1D01G348500 chr1D 80.734 109 10 4 2054 2152 206961248 206961355 1.200000e-09 75
5 TraesCS1D01G348500 chr1A 96.674 962 30 2 1 960 532777729 532776768 0.000000e+00 1598
6 TraesCS1D01G348500 chr1A 89.106 872 68 17 951 1802 532776414 532775550 0.000000e+00 1059
7 TraesCS1D01G348500 chr1A 84.606 786 111 8 1024 1802 532762229 532761447 0.000000e+00 773
8 TraesCS1D01G348500 chr1A 85.674 712 60 20 1005 1712 547384892 547385565 0.000000e+00 712
9 TraesCS1D01G348500 chr1A 81.322 348 51 12 2777 3115 13181282 13180940 1.420000e-68 270
10 TraesCS1D01G348500 chr1A 83.665 251 38 2 2868 3115 46962229 46962479 1.870000e-57 233
11 TraesCS1D01G348500 chr1A 83.673 245 40 0 2871 3115 45768117 45767873 6.720000e-57 231
12 TraesCS1D01G348500 chr1A 81.919 271 28 10 1 262 547383983 547384241 3.150000e-50 209
13 TraesCS1D01G348500 chr1B 89.356 808 66 10 1003 1802 588498464 588497669 0.000000e+00 998
14 TraesCS1D01G348500 chr1B 88.790 562 48 11 34 585 588504107 588503551 0.000000e+00 675
15 TraesCS1D01G348500 chr1B 85.882 425 44 9 1304 1713 622701239 622701662 3.690000e-119 438
16 TraesCS1D01G348500 chr1B 89.139 267 20 3 1002 1268 622700581 622700838 1.080000e-84 324
17 TraesCS1D01G348500 chr1B 90.083 121 9 2 807 927 588498658 588498541 1.500000e-33 154
18 TraesCS1D01G348500 chr6D 95.833 504 17 4 2155 2656 158366729 158367230 0.000000e+00 811
19 TraesCS1D01G348500 chr4D 95.800 500 18 3 2156 2654 427973754 427974251 0.000000e+00 804
20 TraesCS1D01G348500 chr4D 95.200 500 21 3 2156 2654 10130105 10130602 0.000000e+00 787
21 TraesCS1D01G348500 chr4D 89.423 104 11 0 2009 2112 17560427 17560324 7.010000e-27 132
22 TraesCS1D01G348500 chr2D 95.437 504 17 4 2156 2654 277088197 277087695 0.000000e+00 798
23 TraesCS1D01G348500 chr2D 85.988 678 70 14 1058 1713 25919687 25919013 0.000000e+00 702
24 TraesCS1D01G348500 chr2D 85.311 354 46 4 2768 3116 315049502 315049854 8.220000e-96 361
25 TraesCS1D01G348500 chr2D 87.288 118 9 4 1839 1954 315049263 315049376 2.520000e-26 130
26 TraesCS1D01G348500 chr2D 81.013 158 17 9 1855 2001 315062294 315062449 2.540000e-21 113
27 TraesCS1D01G348500 chr5D 95.427 503 18 3 2156 2654 526362196 526362697 0.000000e+00 797
28 TraesCS1D01G348500 chr5D 95.200 500 21 3 2156 2654 12867989 12867492 0.000000e+00 787
29 TraesCS1D01G348500 chr3D 95.409 501 19 4 2156 2654 329319756 329319258 0.000000e+00 795
30 TraesCS1D01G348500 chr3D 79.101 445 73 14 2683 3115 14220737 14220301 3.930000e-74 289
31 TraesCS1D01G348500 chr7D 95.409 501 18 4 2156 2654 252496735 252497232 0.000000e+00 793
32 TraesCS1D01G348500 chr7D 87.857 140 15 2 2008 2147 6722406 6722543 2.490000e-36 163
33 TraesCS1D01G348500 chr7D 89.423 104 10 1 2009 2112 570276673 570276775 2.520000e-26 130
34 TraesCS1D01G348500 chr7A 82.474 679 62 21 1058 1713 10419857 10419213 2.730000e-150 542
35 TraesCS1D01G348500 chr7A 82.581 155 15 4 2009 2152 60050827 60050980 3.260000e-25 126
36 TraesCS1D01G348500 chr6A 84.919 557 60 14 1179 1713 407124008 407124562 2.730000e-150 542
37 TraesCS1D01G348500 chr6A 83.688 141 17 6 2009 2147 46872500 46872636 9.070000e-26 128
38 TraesCS1D01G348500 chr6B 83.616 354 52 5 2768 3116 31013702 31013350 8.330000e-86 327
39 TraesCS1D01G348500 chr6B 80.738 244 41 6 2874 3115 2632853 2633092 5.310000e-43 185
40 TraesCS1D01G348500 chr2A 81.009 337 52 10 2788 3115 23464079 23463746 1.110000e-64 257
41 TraesCS1D01G348500 chr4A 81.224 245 40 3 2874 3115 494547577 494547336 3.170000e-45 193
42 TraesCS1D01G348500 chr3A 85.000 140 15 2 2009 2148 731396837 731396704 1.510000e-28 137
43 TraesCS1D01G348500 chr3A 85.000 140 15 2 2009 2148 731440304 731440171 1.510000e-28 137
44 TraesCS1D01G348500 chr3A 85.600 125 16 2 2009 2132 76547366 76547243 2.520000e-26 130
45 TraesCS1D01G348500 chr7B 88.679 106 12 0 2009 2114 77590371 77590266 2.520000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G348500 chr1D 435272376 435275491 3115 True 5755.0 5755 100.0000 1 3116 1 chr1D.!!$R2 3115
1 TraesCS1D01G348500 chr1D 452620806 452621514 708 False 806.0 806 87.5350 1005 1708 1 chr1D.!!$F2 703
2 TraesCS1D01G348500 chr1D 383938817 383939325 508 True 784.0 784 94.5310 2157 2664 1 chr1D.!!$R1 507
3 TraesCS1D01G348500 chr1A 532775550 532777729 2179 True 1328.5 1598 92.8900 1 1802 2 chr1A.!!$R4 1801
4 TraesCS1D01G348500 chr1A 532761447 532762229 782 True 773.0 773 84.6060 1024 1802 1 chr1A.!!$R3 778
5 TraesCS1D01G348500 chr1A 547383983 547385565 1582 False 460.5 712 83.7965 1 1712 2 chr1A.!!$F2 1711
6 TraesCS1D01G348500 chr1B 588503551 588504107 556 True 675.0 675 88.7900 34 585 1 chr1B.!!$R1 551
7 TraesCS1D01G348500 chr1B 588497669 588498658 989 True 576.0 998 89.7195 807 1802 2 chr1B.!!$R2 995
8 TraesCS1D01G348500 chr1B 622700581 622701662 1081 False 381.0 438 87.5105 1002 1713 2 chr1B.!!$F1 711
9 TraesCS1D01G348500 chr6D 158366729 158367230 501 False 811.0 811 95.8330 2155 2656 1 chr6D.!!$F1 501
10 TraesCS1D01G348500 chr2D 277087695 277088197 502 True 798.0 798 95.4370 2156 2654 1 chr2D.!!$R2 498
11 TraesCS1D01G348500 chr2D 25919013 25919687 674 True 702.0 702 85.9880 1058 1713 1 chr2D.!!$R1 655
12 TraesCS1D01G348500 chr2D 315049263 315049854 591 False 245.5 361 86.2995 1839 3116 2 chr2D.!!$F2 1277
13 TraesCS1D01G348500 chr5D 526362196 526362697 501 False 797.0 797 95.4270 2156 2654 1 chr5D.!!$F1 498
14 TraesCS1D01G348500 chr7A 10419213 10419857 644 True 542.0 542 82.4740 1058 1713 1 chr7A.!!$R1 655
15 TraesCS1D01G348500 chr6A 407124008 407124562 554 False 542.0 542 84.9190 1179 1713 1 chr6A.!!$F2 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 489 0.248498 ACCGTGATGTCGTATCTGCG 60.248 55.0 4.56 7.84 0.0 5.18 F
2025 2969 0.105408 TTAAATAGCGGCGGACCTCC 59.895 55.0 9.78 0.00 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2991 0.039180 TAGCCCGCTATAGCCTGCTA 59.961 55.0 26.87 26.87 42.16 3.49 R
3085 4038 0.030101 GATTGAGGAGCTCGGTCGAG 59.970 60.0 15.19 15.19 44.56 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
313 324 5.821995 TCTCTGTGATTGTGTTTGAACATCA 59.178 36.000 0.00 0.00 41.59 3.07
399 489 0.248498 ACCGTGATGTCGTATCTGCG 60.248 55.000 4.56 7.84 0.00 5.18
537 634 1.377725 CCTGCTTCGCTCCATTGGT 60.378 57.895 1.86 0.00 0.00 3.67
586 683 5.922544 CCTTGCATTTCTTTTTCGATGAACT 59.077 36.000 0.00 0.00 0.00 3.01
590 687 7.147312 TGCATTTCTTTTTCGATGAACTTCAT 58.853 30.769 3.80 3.80 40.34 2.57
681 778 4.265893 TGCTGTACTGTTGGTTCTCAAAA 58.734 39.130 1.46 0.00 37.08 2.44
687 784 8.378172 TGTACTGTTGGTTCTCAAAATAAGAG 57.622 34.615 0.00 0.00 37.08 2.85
708 805 5.869888 AGAGAAAAGGTTTGCTATACTGTCG 59.130 40.000 0.00 0.00 0.00 4.35
727 824 0.699151 GTACGTACACGAACACTGCG 59.301 55.000 20.67 0.00 43.02 5.18
794 894 4.019858 CAAGTATCACTCCAGTCCTCAGA 58.980 47.826 0.00 0.00 0.00 3.27
960 1129 1.623811 CACCTCCGGAAAGAAGAAGGA 59.376 52.381 5.23 0.00 0.00 3.36
1322 2230 0.882484 TGCCATTTCGTCGAACAGCA 60.882 50.000 17.24 17.24 0.00 4.41
1380 2295 2.604174 CCGGTGCTTCTTCGCGTTT 61.604 57.895 5.77 0.00 0.00 3.60
1423 2338 0.980423 GAGCCAGTCCCTCAAGTTCT 59.020 55.000 0.00 0.00 0.00 3.01
1520 2445 3.068307 CACATGTACTCTACCTAGCACCC 59.932 52.174 0.00 0.00 0.00 4.61
1521 2446 2.449137 TGTACTCTACCTAGCACCCC 57.551 55.000 0.00 0.00 0.00 4.95
1524 2449 3.528905 TGTACTCTACCTAGCACCCCTTA 59.471 47.826 0.00 0.00 0.00 2.69
1526 2451 2.857498 ACTCTACCTAGCACCCCTTAGA 59.143 50.000 0.00 0.00 0.00 2.10
1528 2453 2.857498 TCTACCTAGCACCCCTTAGACT 59.143 50.000 0.00 0.00 0.00 3.24
1529 2454 1.867363 ACCTAGCACCCCTTAGACTG 58.133 55.000 0.00 0.00 0.00 3.51
1530 2455 1.078989 ACCTAGCACCCCTTAGACTGT 59.921 52.381 0.00 0.00 0.00 3.55
1538 2465 4.442192 GCACCCCTTAGACTGTATCTTCTG 60.442 50.000 0.00 0.00 39.04 3.02
1628 2560 1.530323 TCACGGACGATGAAGAGACA 58.470 50.000 0.00 0.00 0.00 3.41
1671 2604 0.183492 AGCTTTTCTGCCCACACTGA 59.817 50.000 0.00 0.00 0.00 3.41
1677 2610 1.123861 TCTGCCCACACTGAAGCTCT 61.124 55.000 0.00 0.00 0.00 4.09
1713 2646 8.820933 CAATCGAGTGACAAGTATGTTGATTAT 58.179 33.333 7.15 0.00 40.74 1.28
1717 2650 7.431376 CGAGTGACAAGTATGTTGATTATACGT 59.569 37.037 0.00 0.00 40.74 3.57
1749 2682 5.991328 ACATGCTACGATCGATCAATTTT 57.009 34.783 24.34 6.05 0.00 1.82
1751 2684 5.294306 ACATGCTACGATCGATCAATTTTGT 59.706 36.000 24.34 16.03 0.00 2.83
1754 2687 8.647226 CATGCTACGATCGATCAATTTTGTATA 58.353 33.333 24.34 9.74 0.00 1.47
1756 2689 8.079809 TGCTACGATCGATCAATTTTGTATAGA 58.920 33.333 24.34 2.95 0.00 1.98
1758 2691 7.339732 ACGATCGATCAATTTTGTATAGAGC 57.660 36.000 24.34 0.00 0.00 4.09
1759 2692 7.148641 ACGATCGATCAATTTTGTATAGAGCT 58.851 34.615 24.34 0.00 0.00 4.09
1761 2694 8.579600 CGATCGATCAATTTTGTATAGAGCTAC 58.420 37.037 24.40 0.00 0.00 3.58
1776 2709 9.806203 GTATAGAGCTACTCTTATCTCACGATA 57.194 37.037 1.88 0.00 41.50 2.92
1783 2716 7.539366 GCTACTCTTATCTCACGATAAACCATC 59.461 40.741 0.00 0.00 40.56 3.51
1787 2720 4.920640 ATCTCACGATAAACCATCTCGT 57.079 40.909 0.00 0.00 45.73 4.18
1802 2735 6.821388 ACCATCTCGTCTTCATATAAGCTTT 58.179 36.000 3.20 0.00 0.00 3.51
1803 2736 6.703607 ACCATCTCGTCTTCATATAAGCTTTG 59.296 38.462 3.20 0.00 0.00 2.77
1804 2737 6.146837 CCATCTCGTCTTCATATAAGCTTTGG 59.853 42.308 3.20 0.00 0.00 3.28
1805 2738 5.601662 TCTCGTCTTCATATAAGCTTTGGG 58.398 41.667 3.20 0.00 0.00 4.12
1806 2739 4.703897 TCGTCTTCATATAAGCTTTGGGG 58.296 43.478 3.20 0.00 0.00 4.96
1807 2740 3.815401 CGTCTTCATATAAGCTTTGGGGG 59.185 47.826 3.20 0.00 0.00 5.40
1808 2741 4.686122 CGTCTTCATATAAGCTTTGGGGGT 60.686 45.833 3.20 0.00 0.00 4.95
1809 2742 4.580580 GTCTTCATATAAGCTTTGGGGGTG 59.419 45.833 3.20 0.00 0.00 4.61
1810 2743 4.229582 TCTTCATATAAGCTTTGGGGGTGT 59.770 41.667 3.20 0.00 0.00 4.16
1811 2744 3.897239 TCATATAAGCTTTGGGGGTGTG 58.103 45.455 3.20 0.00 0.00 3.82
1812 2745 3.525609 TCATATAAGCTTTGGGGGTGTGA 59.474 43.478 3.20 0.00 0.00 3.58
1813 2746 4.167892 TCATATAAGCTTTGGGGGTGTGAT 59.832 41.667 3.20 0.00 0.00 3.06
1814 2747 2.990740 TAAGCTTTGGGGGTGTGATT 57.009 45.000 3.20 0.00 0.00 2.57
1815 2748 1.341080 AAGCTTTGGGGGTGTGATTG 58.659 50.000 0.00 0.00 0.00 2.67
1816 2749 1.187567 AGCTTTGGGGGTGTGATTGC 61.188 55.000 0.00 0.00 0.00 3.56
1817 2750 1.470996 GCTTTGGGGGTGTGATTGCA 61.471 55.000 0.00 0.00 0.00 4.08
1818 2751 1.047002 CTTTGGGGGTGTGATTGCAA 58.953 50.000 0.00 0.00 0.00 4.08
1819 2752 1.624813 CTTTGGGGGTGTGATTGCAAT 59.375 47.619 12.83 12.83 0.00 3.56
1820 2753 1.727062 TTGGGGGTGTGATTGCAATT 58.273 45.000 14.33 0.00 0.00 2.32
1821 2754 1.727062 TGGGGGTGTGATTGCAATTT 58.273 45.000 14.33 0.00 0.00 1.82
1822 2755 2.053244 TGGGGGTGTGATTGCAATTTT 58.947 42.857 14.33 0.00 0.00 1.82
1823 2756 2.224475 TGGGGGTGTGATTGCAATTTTG 60.224 45.455 14.33 0.00 0.00 2.44
1824 2757 2.224499 GGGGGTGTGATTGCAATTTTGT 60.224 45.455 14.33 0.00 0.00 2.83
1825 2758 3.475575 GGGGTGTGATTGCAATTTTGTT 58.524 40.909 14.33 0.00 0.00 2.83
1826 2759 3.250521 GGGGTGTGATTGCAATTTTGTTG 59.749 43.478 14.33 0.00 0.00 3.33
1827 2760 3.303924 GGGTGTGATTGCAATTTTGTTGC 60.304 43.478 14.33 5.85 45.11 4.17
1828 2761 3.560896 GGTGTGATTGCAATTTTGTTGCT 59.439 39.130 14.33 0.00 45.13 3.91
1829 2762 4.749099 GGTGTGATTGCAATTTTGTTGCTA 59.251 37.500 14.33 6.81 45.13 3.49
1830 2763 5.236047 GGTGTGATTGCAATTTTGTTGCTAA 59.764 36.000 14.33 7.07 45.13 3.09
1831 2764 6.238320 GGTGTGATTGCAATTTTGTTGCTAAA 60.238 34.615 14.33 1.93 45.13 1.85
1832 2765 7.354257 GTGTGATTGCAATTTTGTTGCTAAAT 58.646 30.769 14.33 6.26 45.13 1.40
1833 2766 8.494347 GTGTGATTGCAATTTTGTTGCTAAATA 58.506 29.630 14.33 0.00 45.13 1.40
1834 2767 8.494347 TGTGATTGCAATTTTGTTGCTAAATAC 58.506 29.630 14.33 7.66 45.13 1.89
1835 2768 8.494347 GTGATTGCAATTTTGTTGCTAAATACA 58.506 29.630 14.33 0.00 45.13 2.29
1836 2769 8.710551 TGATTGCAATTTTGTTGCTAAATACAG 58.289 29.630 14.33 0.00 45.13 2.74
1837 2770 8.606040 ATTGCAATTTTGTTGCTAAATACAGT 57.394 26.923 5.99 0.00 45.13 3.55
1840 2773 8.356657 TGCAATTTTGTTGCTAAATACAGTAGT 58.643 29.630 13.17 0.00 45.13 2.73
1909 2842 1.976132 CTCCTGCCCACGATCACCAT 61.976 60.000 0.00 0.00 0.00 3.55
1910 2843 1.820906 CCTGCCCACGATCACCATG 60.821 63.158 0.00 0.00 0.00 3.66
1921 2854 1.691976 GATCACCATGATCCCCACGTA 59.308 52.381 7.46 0.00 45.66 3.57
1933 2867 2.439960 CCACGTATGGGGCTGGCTA 61.440 63.158 0.00 0.00 43.04 3.93
1954 2888 1.829222 CGGCCGATATATGTACCCCTT 59.171 52.381 24.07 0.00 0.00 3.95
1955 2889 2.418197 CGGCCGATATATGTACCCCTTG 60.418 54.545 24.07 0.00 0.00 3.61
1956 2890 2.570302 GGCCGATATATGTACCCCTTGT 59.430 50.000 0.00 0.00 0.00 3.16
1957 2891 3.770933 GGCCGATATATGTACCCCTTGTA 59.229 47.826 0.00 0.00 0.00 2.41
1966 2900 3.097342 GTACCCCTTGTACCTCTCTGA 57.903 52.381 0.00 0.00 43.41 3.27
1980 2924 6.324601 ACCTCTCTGAATCCAATGAGAAAT 57.675 37.500 0.00 0.00 35.50 2.17
1981 2925 7.443302 ACCTCTCTGAATCCAATGAGAAATA 57.557 36.000 0.00 0.00 35.50 1.40
1982 2926 7.507829 ACCTCTCTGAATCCAATGAGAAATAG 58.492 38.462 0.00 0.00 35.50 1.73
1983 2927 7.346698 ACCTCTCTGAATCCAATGAGAAATAGA 59.653 37.037 0.00 0.00 35.50 1.98
1984 2928 7.656948 CCTCTCTGAATCCAATGAGAAATAGAC 59.343 40.741 0.00 0.00 35.50 2.59
1986 2930 8.202811 TCTCTGAATCCAATGAGAAATAGACTG 58.797 37.037 0.00 0.00 33.30 3.51
1987 2931 6.765036 TCTGAATCCAATGAGAAATAGACTGC 59.235 38.462 0.00 0.00 0.00 4.40
1988 2932 6.417258 TGAATCCAATGAGAAATAGACTGCA 58.583 36.000 0.00 0.00 0.00 4.41
1990 2934 7.228108 TGAATCCAATGAGAAATAGACTGCATC 59.772 37.037 0.00 0.00 0.00 3.91
1991 2935 5.993055 TCCAATGAGAAATAGACTGCATCA 58.007 37.500 0.00 0.00 0.00 3.07
1992 2936 6.053650 TCCAATGAGAAATAGACTGCATCAG 58.946 40.000 0.00 0.00 37.52 2.90
1994 2938 6.318144 CCAATGAGAAATAGACTGCATCAGTT 59.682 38.462 0.66 0.00 45.44 3.16
1995 2939 7.148120 CCAATGAGAAATAGACTGCATCAGTTT 60.148 37.037 0.66 0.00 45.44 2.66
1996 2940 7.934855 ATGAGAAATAGACTGCATCAGTTTT 57.065 32.000 0.66 0.00 45.44 2.43
1997 2941 9.453572 AATGAGAAATAGACTGCATCAGTTTTA 57.546 29.630 0.66 0.00 45.44 1.52
1998 2942 8.846943 TGAGAAATAGACTGCATCAGTTTTAA 57.153 30.769 0.66 0.00 45.44 1.52
1999 2943 9.453572 TGAGAAATAGACTGCATCAGTTTTAAT 57.546 29.630 0.66 0.00 45.44 1.40
2018 2962 9.823979 GTTTTAATAATGTTTTAAATAGCGGCG 57.176 29.630 0.51 0.51 30.84 6.46
2019 2963 8.563289 TTTAATAATGTTTTAAATAGCGGCGG 57.437 30.769 9.78 0.00 0.00 6.13
2020 2964 6.380095 AATAATGTTTTAAATAGCGGCGGA 57.620 33.333 9.78 0.00 0.00 5.54
2021 2965 3.685836 ATGTTTTAAATAGCGGCGGAC 57.314 42.857 9.78 0.00 0.00 4.79
2022 2966 1.738908 TGTTTTAAATAGCGGCGGACC 59.261 47.619 9.78 0.00 0.00 4.46
2023 2967 2.011947 GTTTTAAATAGCGGCGGACCT 58.988 47.619 9.78 0.00 0.00 3.85
2024 2968 1.944032 TTTAAATAGCGGCGGACCTC 58.056 50.000 9.78 0.00 0.00 3.85
2025 2969 0.105408 TTAAATAGCGGCGGACCTCC 59.895 55.000 9.78 0.00 0.00 4.30
2026 2970 1.044231 TAAATAGCGGCGGACCTCCA 61.044 55.000 9.78 0.00 35.14 3.86
2027 2971 1.906105 AAATAGCGGCGGACCTCCAA 61.906 55.000 9.78 0.00 35.14 3.53
2028 2972 1.906105 AATAGCGGCGGACCTCCAAA 61.906 55.000 9.78 0.00 35.14 3.28
2029 2973 1.696097 ATAGCGGCGGACCTCCAAAT 61.696 55.000 9.78 0.00 35.14 2.32
2030 2974 2.306255 TAGCGGCGGACCTCCAAATC 62.306 60.000 9.78 0.00 35.14 2.17
2031 2975 2.267642 CGGCGGACCTCCAAATCA 59.732 61.111 0.00 0.00 35.14 2.57
2032 2976 1.815421 CGGCGGACCTCCAAATCAG 60.815 63.158 0.00 0.00 35.14 2.90
2033 2977 1.299976 GGCGGACCTCCAAATCAGT 59.700 57.895 0.00 0.00 35.14 3.41
2034 2978 0.322546 GGCGGACCTCCAAATCAGTT 60.323 55.000 0.00 0.00 35.14 3.16
2035 2979 1.065709 GGCGGACCTCCAAATCAGTTA 60.066 52.381 0.00 0.00 35.14 2.24
2036 2980 2.421529 GGCGGACCTCCAAATCAGTTAT 60.422 50.000 0.00 0.00 35.14 1.89
2037 2981 3.181458 GGCGGACCTCCAAATCAGTTATA 60.181 47.826 0.00 0.00 35.14 0.98
2038 2982 4.058817 GCGGACCTCCAAATCAGTTATAG 58.941 47.826 0.00 0.00 35.14 1.31
2039 2983 4.058817 CGGACCTCCAAATCAGTTATAGC 58.941 47.826 0.00 0.00 35.14 2.97
2040 2984 4.058817 GGACCTCCAAATCAGTTATAGCG 58.941 47.826 0.00 0.00 35.64 4.26
2041 2985 4.202223 GGACCTCCAAATCAGTTATAGCGA 60.202 45.833 0.00 0.00 35.64 4.93
2042 2986 5.353394 ACCTCCAAATCAGTTATAGCGAA 57.647 39.130 0.00 0.00 0.00 4.70
2043 2987 5.360591 ACCTCCAAATCAGTTATAGCGAAG 58.639 41.667 0.00 0.00 0.00 3.79
2064 3008 1.067821 CTATAGCAGGCTATAGCGGGC 59.932 57.143 26.57 23.98 46.26 6.13
2065 3009 2.525381 AGCAGGCTATAGCGGGCT 60.525 61.111 26.81 26.81 43.17 5.19
2066 3010 0.039180 TAGCAGGCTATAGCGGGCTA 59.961 55.000 29.97 29.97 45.07 3.93
2067 3011 0.616111 AGCAGGCTATAGCGGGCTAT 60.616 55.000 29.48 16.61 45.07 2.97
2068 3012 0.250513 GCAGGCTATAGCGGGCTATT 59.749 55.000 24.07 3.74 43.26 1.73
2069 3013 1.339151 GCAGGCTATAGCGGGCTATTT 60.339 52.381 24.07 0.00 43.26 1.40
2070 3014 2.350522 CAGGCTATAGCGGGCTATTTG 58.649 52.381 18.30 12.10 43.26 2.32
2071 3015 1.978580 AGGCTATAGCGGGCTATTTGT 59.021 47.619 18.30 0.00 43.26 2.83
2072 3016 3.056107 CAGGCTATAGCGGGCTATTTGTA 60.056 47.826 18.30 0.21 43.26 2.41
2073 3017 3.581332 AGGCTATAGCGGGCTATTTGTAA 59.419 43.478 18.30 0.00 43.26 2.41
2074 3018 4.041198 AGGCTATAGCGGGCTATTTGTAAA 59.959 41.667 18.30 0.00 43.26 2.01
2075 3019 4.941873 GGCTATAGCGGGCTATTTGTAAAT 59.058 41.667 18.30 0.00 43.26 1.40
2076 3020 5.163754 GGCTATAGCGGGCTATTTGTAAATG 60.164 44.000 18.30 1.99 43.26 2.32
2077 3021 5.642063 GCTATAGCGGGCTATTTGTAAATGA 59.358 40.000 17.49 0.00 39.65 2.57
2078 3022 6.183360 GCTATAGCGGGCTATTTGTAAATGAG 60.183 42.308 17.49 7.51 39.65 2.90
2079 3023 4.150897 AGCGGGCTATTTGTAAATGAGA 57.849 40.909 0.00 0.00 0.00 3.27
2080 3024 4.718961 AGCGGGCTATTTGTAAATGAGAT 58.281 39.130 0.00 0.00 0.00 2.75
2081 3025 4.757149 AGCGGGCTATTTGTAAATGAGATC 59.243 41.667 0.00 0.00 0.00 2.75
2082 3026 4.515191 GCGGGCTATTTGTAAATGAGATCA 59.485 41.667 0.00 0.00 0.00 2.92
2083 3027 5.182001 GCGGGCTATTTGTAAATGAGATCAT 59.818 40.000 0.00 0.00 38.41 2.45
2095 3039 5.511234 AATGAGATCATTTAGCAGCAACC 57.489 39.130 2.17 0.00 43.48 3.77
2096 3040 4.226427 TGAGATCATTTAGCAGCAACCT 57.774 40.909 0.00 0.00 0.00 3.50
2097 3041 3.943381 TGAGATCATTTAGCAGCAACCTG 59.057 43.478 0.00 0.00 42.13 4.00
2107 3051 2.653115 GCAACCTGCTGAAAGGGC 59.347 61.111 0.00 0.00 42.11 5.19
2108 3052 1.905354 GCAACCTGCTGAAAGGGCT 60.905 57.895 0.00 0.00 42.11 5.19
2109 3053 0.609131 GCAACCTGCTGAAAGGGCTA 60.609 55.000 0.00 0.00 42.11 3.93
2110 3054 1.957113 GCAACCTGCTGAAAGGGCTAT 60.957 52.381 0.00 0.00 42.11 2.97
2111 3055 2.683742 GCAACCTGCTGAAAGGGCTATA 60.684 50.000 0.00 0.00 42.11 1.31
2112 3056 3.209410 CAACCTGCTGAAAGGGCTATAG 58.791 50.000 0.00 0.00 42.11 1.31
2113 3057 1.141858 ACCTGCTGAAAGGGCTATAGC 59.858 52.381 16.78 16.78 42.11 2.97
2125 3069 2.598686 GCTATAGCCCCGTTATAGCC 57.401 55.000 14.13 1.06 44.10 3.93
2126 3070 1.202382 GCTATAGCCCCGTTATAGCCG 60.202 57.143 14.13 0.00 44.10 5.52
2127 3071 1.407979 CTATAGCCCCGTTATAGCCGG 59.592 57.143 0.00 0.00 45.07 6.13
2128 3072 1.896122 ATAGCCCCGTTATAGCCGGC 61.896 60.000 21.89 21.89 44.13 6.13
2129 3073 3.937447 GCCCCGTTATAGCCGGCT 61.937 66.667 34.85 34.85 44.13 5.52
2130 3074 2.576832 GCCCCGTTATAGCCGGCTA 61.577 63.158 36.88 36.88 44.13 3.93
2131 3075 1.896122 GCCCCGTTATAGCCGGCTAT 61.896 60.000 42.09 42.09 44.13 2.97
2132 3076 0.611714 CCCCGTTATAGCCGGCTATT 59.388 55.000 44.65 30.54 44.13 1.73
2133 3077 1.002773 CCCCGTTATAGCCGGCTATTT 59.997 52.381 44.65 30.05 44.13 1.40
2134 3078 2.234414 CCCCGTTATAGCCGGCTATTTA 59.766 50.000 44.65 31.98 44.13 1.40
2135 3079 3.306919 CCCCGTTATAGCCGGCTATTTAA 60.307 47.826 44.65 33.14 44.13 1.52
2136 3080 4.317488 CCCGTTATAGCCGGCTATTTAAA 58.683 43.478 44.65 32.50 44.13 1.52
2137 3081 4.756135 CCCGTTATAGCCGGCTATTTAAAA 59.244 41.667 44.65 32.18 44.13 1.52
2138 3082 5.334337 CCCGTTATAGCCGGCTATTTAAAAC 60.334 44.000 44.65 37.40 44.13 2.43
2139 3083 5.467735 CCGTTATAGCCGGCTATTTAAAACT 59.532 40.000 44.65 26.62 39.65 2.66
2140 3084 6.646240 CCGTTATAGCCGGCTATTTAAAACTA 59.354 38.462 44.65 26.55 39.65 2.24
2141 3085 7.332678 CCGTTATAGCCGGCTATTTAAAACTAT 59.667 37.037 44.65 26.21 39.65 2.12
2142 3086 8.166706 CGTTATAGCCGGCTATTTAAAACTATG 58.833 37.037 44.65 26.98 39.65 2.23
2200 3144 1.284313 TGGTGATGATGGTGTGCCTA 58.716 50.000 0.00 0.00 35.27 3.93
2201 3145 1.845791 TGGTGATGATGGTGTGCCTAT 59.154 47.619 0.00 0.00 35.27 2.57
2203 3147 2.138320 GTGATGATGGTGTGCCTATCG 58.862 52.381 0.00 0.00 35.27 2.92
2247 3191 7.827729 TCCGATCTATATCTGACGGATAGAAAA 59.172 37.037 9.78 0.00 43.30 2.29
2667 3616 4.467438 TCTTGCTAGTCAGACATCAATCCA 59.533 41.667 2.66 0.00 0.00 3.41
2668 3617 4.824479 TGCTAGTCAGACATCAATCCAA 57.176 40.909 2.66 0.00 0.00 3.53
2672 3621 3.690460 AGTCAGACATCAATCCAAACCC 58.310 45.455 2.66 0.00 0.00 4.11
2673 3622 3.074390 AGTCAGACATCAATCCAAACCCA 59.926 43.478 2.66 0.00 0.00 4.51
2681 3630 2.178984 TCAATCCAAACCCACTTCCCTT 59.821 45.455 0.00 0.00 0.00 3.95
2690 3639 1.308069 CCACTTCCCTTGCCATGACG 61.308 60.000 0.00 0.00 0.00 4.35
2694 3643 0.109532 TTCCCTTGCCATGACGAACA 59.890 50.000 0.00 0.00 0.00 3.18
2719 3668 1.920835 GGCAACCACCTCCTCCTCT 60.921 63.158 0.00 0.00 0.00 3.69
2720 3669 0.617820 GGCAACCACCTCCTCCTCTA 60.618 60.000 0.00 0.00 0.00 2.43
2721 3670 0.537653 GCAACCACCTCCTCCTCTAC 59.462 60.000 0.00 0.00 0.00 2.59
2722 3671 1.897647 GCAACCACCTCCTCCTCTACT 60.898 57.143 0.00 0.00 0.00 2.57
2723 3672 2.541466 CAACCACCTCCTCCTCTACTT 58.459 52.381 0.00 0.00 0.00 2.24
2724 3673 2.498078 CAACCACCTCCTCCTCTACTTC 59.502 54.545 0.00 0.00 0.00 3.01
2725 3674 1.007359 ACCACCTCCTCCTCTACTTCC 59.993 57.143 0.00 0.00 0.00 3.46
2726 3675 1.689892 CCACCTCCTCCTCTACTTCCC 60.690 61.905 0.00 0.00 0.00 3.97
2727 3676 1.007238 CACCTCCTCCTCTACTTCCCA 59.993 57.143 0.00 0.00 0.00 4.37
2728 3677 1.289530 ACCTCCTCCTCTACTTCCCAG 59.710 57.143 0.00 0.00 0.00 4.45
2729 3678 1.571457 CCTCCTCCTCTACTTCCCAGA 59.429 57.143 0.00 0.00 0.00 3.86
2730 3679 2.424234 CCTCCTCCTCTACTTCCCAGAG 60.424 59.091 0.00 0.00 39.44 3.35
2735 3684 1.394618 CTCTACTTCCCAGAGGTCCG 58.605 60.000 0.00 0.00 36.65 4.79
2736 3685 0.683504 TCTACTTCCCAGAGGTCCGC 60.684 60.000 0.00 0.00 0.00 5.54
2737 3686 1.677637 CTACTTCCCAGAGGTCCGCC 61.678 65.000 0.00 0.00 0.00 6.13
2738 3687 2.449967 TACTTCCCAGAGGTCCGCCA 62.450 60.000 0.00 0.00 37.19 5.69
2739 3688 2.528127 TTCCCAGAGGTCCGCCAA 60.528 61.111 0.00 0.00 37.19 4.52
2740 3689 2.124507 CTTCCCAGAGGTCCGCCAAA 62.125 60.000 0.00 0.00 37.19 3.28
2741 3690 2.359975 CCCAGAGGTCCGCCAAAC 60.360 66.667 0.00 0.00 37.19 2.93
2742 3691 2.359975 CCAGAGGTCCGCCAAACC 60.360 66.667 0.00 0.00 37.19 3.27
2743 3692 2.742372 CAGAGGTCCGCCAAACCG 60.742 66.667 0.00 0.00 41.89 4.44
2744 3693 3.239253 AGAGGTCCGCCAAACCGT 61.239 61.111 0.00 0.00 41.89 4.83
2745 3694 2.741211 GAGGTCCGCCAAACCGTC 60.741 66.667 0.00 0.00 41.89 4.79
2746 3695 4.324991 AGGTCCGCCAAACCGTCC 62.325 66.667 0.00 0.00 41.89 4.79
2748 3697 4.629523 GTCCGCCAAACCGTCCCA 62.630 66.667 0.00 0.00 0.00 4.37
2749 3698 3.642503 TCCGCCAAACCGTCCCAT 61.643 61.111 0.00 0.00 0.00 4.00
2750 3699 3.439540 CCGCCAAACCGTCCCATG 61.440 66.667 0.00 0.00 0.00 3.66
2751 3700 2.359354 CGCCAAACCGTCCCATGA 60.359 61.111 0.00 0.00 0.00 3.07
2752 3701 2.686816 CGCCAAACCGTCCCATGAC 61.687 63.158 0.00 0.00 38.18 3.06
2753 3702 2.340328 GCCAAACCGTCCCATGACC 61.340 63.158 0.00 0.00 38.32 4.02
2754 3703 2.038269 CCAAACCGTCCCATGACCG 61.038 63.158 0.00 0.00 38.32 4.79
2755 3704 2.038269 CAAACCGTCCCATGACCGG 61.038 63.158 0.00 0.00 38.32 5.28
2756 3705 3.912745 AAACCGTCCCATGACCGGC 62.913 63.158 0.00 0.00 38.15 6.13
2760 3709 4.832608 GTCCCATGACCGGCGTCC 62.833 72.222 6.01 0.00 38.32 4.79
2762 3711 4.402528 CCCATGACCGGCGTCCAA 62.403 66.667 6.01 0.00 38.32 3.53
2763 3712 2.359354 CCATGACCGGCGTCCAAA 60.359 61.111 6.01 0.00 38.32 3.28
2764 3713 1.748879 CCATGACCGGCGTCCAAAT 60.749 57.895 6.01 0.00 38.32 2.32
2765 3714 1.714899 CCATGACCGGCGTCCAAATC 61.715 60.000 6.01 0.00 38.32 2.17
2766 3715 0.744414 CATGACCGGCGTCCAAATCT 60.744 55.000 6.01 0.00 38.32 2.40
2775 3724 2.275318 GCGTCCAAATCTCTCCTCTTG 58.725 52.381 0.00 0.00 0.00 3.02
2777 3726 2.637947 GTCCAAATCTCTCCTCTTGCC 58.362 52.381 0.00 0.00 0.00 4.52
2790 3739 2.853542 TTGCCACTGCCCCTCTCA 60.854 61.111 0.00 0.00 36.33 3.27
2792 3741 4.416738 GCCACTGCCCCTCTCACC 62.417 72.222 0.00 0.00 0.00 4.02
2840 3790 3.727258 CCATCTCCGGTGGCCCAA 61.727 66.667 0.00 0.00 0.00 4.12
2848 3798 2.895424 CGGTGGCCCAACCTCTTCT 61.895 63.158 10.38 0.00 40.22 2.85
2868 3818 1.001282 ACCCTCGTCCTACCTTCTCT 58.999 55.000 0.00 0.00 0.00 3.10
2869 3819 1.358445 ACCCTCGTCCTACCTTCTCTT 59.642 52.381 0.00 0.00 0.00 2.85
2870 3820 2.225318 ACCCTCGTCCTACCTTCTCTTT 60.225 50.000 0.00 0.00 0.00 2.52
2871 3821 2.427812 CCCTCGTCCTACCTTCTCTTTC 59.572 54.545 0.00 0.00 0.00 2.62
2878 3831 4.528987 GTCCTACCTTCTCTTTCCTTCAGT 59.471 45.833 0.00 0.00 0.00 3.41
2893 3846 2.736144 TCAGTGACACCATTACCGAC 57.264 50.000 0.84 0.00 0.00 4.79
2909 3862 1.597742 CGACATCACCCCATTCATCC 58.402 55.000 0.00 0.00 0.00 3.51
2914 3867 0.852842 TCACCCCATTCATCCCCATC 59.147 55.000 0.00 0.00 0.00 3.51
2916 3869 1.604593 CCCCATTCATCCCCATCGC 60.605 63.158 0.00 0.00 0.00 4.58
2917 3870 1.968017 CCCATTCATCCCCATCGCG 60.968 63.158 0.00 0.00 0.00 5.87
2923 3876 1.598962 CATCCCCATCGCGCTTGAT 60.599 57.895 5.56 0.00 0.00 2.57
2944 3897 5.874810 TGATCTCAACAGCCACAATTACTAC 59.125 40.000 0.00 0.00 0.00 2.73
2959 3912 0.686441 ACTACCACTGGCGCCATCTA 60.686 55.000 32.87 15.14 0.00 1.98
2971 3924 3.755378 GGCGCCATCTATTTGAGATTCAT 59.245 43.478 24.80 0.00 42.70 2.57
2980 3933 4.889832 ATTTGAGATTCATCTTGGTCGC 57.110 40.909 0.00 0.00 37.25 5.19
2985 3938 1.596727 GATTCATCTTGGTCGCTGCTC 59.403 52.381 0.00 0.00 0.00 4.26
2987 3940 0.610174 TCATCTTGGTCGCTGCTCTT 59.390 50.000 0.00 0.00 0.00 2.85
2989 3942 1.396301 CATCTTGGTCGCTGCTCTTTC 59.604 52.381 0.00 0.00 0.00 2.62
2992 3945 0.320771 TTGGTCGCTGCTCTTTCCTC 60.321 55.000 0.00 0.00 0.00 3.71
3003 3956 4.033009 TGCTCTTTCCTCCATCACATCTA 58.967 43.478 0.00 0.00 0.00 1.98
3004 3957 4.657504 TGCTCTTTCCTCCATCACATCTAT 59.342 41.667 0.00 0.00 0.00 1.98
3022 3975 4.699522 GGCGACACACCACCCTCC 62.700 72.222 0.00 0.00 0.00 4.30
3025 3978 3.647771 GACACACCACCCTCCCCC 61.648 72.222 0.00 0.00 0.00 5.40
3073 4026 1.942657 CTCGCCATAATCCAGTGGTTG 59.057 52.381 9.54 3.36 37.81 3.77
3082 4035 1.964373 CCAGTGGTTGTACACCCGC 60.964 63.158 14.72 14.72 46.68 6.13
3085 4038 0.321298 AGTGGTTGTACACCCGCATC 60.321 55.000 23.11 5.84 46.68 3.91
3098 4051 2.026879 GCATCTCGACCGAGCTCC 59.973 66.667 14.00 0.00 41.71 4.70
3109 4062 1.066573 ACCGAGCTCCTCAATCTTGTG 60.067 52.381 8.47 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.489938 TGGAGAAACTGTGGTATGCC 57.510 50.000 0.00 0.00 0.00 4.40
537 634 0.324183 CTCAGTCTCCTCCTCAGGCA 60.324 60.000 0.00 0.00 40.12 4.75
586 683 6.669631 TCAGGTAGTGGAGTACAGATATGAA 58.330 40.000 0.00 0.00 0.00 2.57
590 687 8.327271 GGTATATCAGGTAGTGGAGTACAGATA 58.673 40.741 0.00 0.00 31.54 1.98
663 760 8.603242 TCTCTTATTTTGAGAACCAACAGTAC 57.397 34.615 0.00 0.00 37.59 2.73
681 778 9.384764 GACAGTATAGCAAACCTTTTCTCTTAT 57.615 33.333 0.00 0.00 0.00 1.73
687 784 5.857822 ACGACAGTATAGCAAACCTTTTC 57.142 39.130 0.00 0.00 0.00 2.29
708 805 0.699151 CGCAGTGTTCGTGTACGTAC 59.301 55.000 18.90 18.90 39.56 3.67
727 824 6.701432 CAAAGGAAATTGCATTCAGACTTC 57.299 37.500 2.65 0.00 0.00 3.01
977 1507 1.466558 CGGCAGCTTCCTTCTTCTTTC 59.533 52.381 0.00 0.00 0.00 2.62
1296 1839 1.001520 TCGACGAAATGGCAAAGAGGA 59.998 47.619 0.00 0.00 0.00 3.71
1520 2445 6.016610 GGCTAGACAGAAGATACAGTCTAAGG 60.017 46.154 0.00 0.00 41.49 2.69
1521 2446 6.770785 AGGCTAGACAGAAGATACAGTCTAAG 59.229 42.308 0.00 0.00 41.49 2.18
1524 2449 5.124036 AGGCTAGACAGAAGATACAGTCT 57.876 43.478 0.00 0.00 43.25 3.24
1526 2451 5.020132 ACAAGGCTAGACAGAAGATACAGT 58.980 41.667 0.00 0.00 0.00 3.55
1528 2453 4.382040 GCACAAGGCTAGACAGAAGATACA 60.382 45.833 0.00 0.00 40.25 2.29
1529 2454 4.116238 GCACAAGGCTAGACAGAAGATAC 58.884 47.826 0.00 0.00 40.25 2.24
1530 2455 4.392921 GCACAAGGCTAGACAGAAGATA 57.607 45.455 0.00 0.00 40.25 1.98
1652 2584 0.183492 TCAGTGTGGGCAGAAAAGCT 59.817 50.000 0.00 0.00 34.17 3.74
1677 2610 0.671472 CACTCGATTGCCTCTGTGCA 60.671 55.000 0.00 0.00 40.07 4.57
1713 2646 5.090757 CGTAGCATGTTCTTCAGTAACGTA 58.909 41.667 0.00 0.00 0.00 3.57
1717 2650 5.034797 CGATCGTAGCATGTTCTTCAGTAA 58.965 41.667 7.03 0.00 0.00 2.24
1721 2654 3.775661 TCGATCGTAGCATGTTCTTCA 57.224 42.857 15.94 0.00 0.00 3.02
1726 2659 5.991328 AAATTGATCGATCGTAGCATGTT 57.009 34.783 20.03 6.58 0.00 2.71
1728 2661 5.741425 ACAAAATTGATCGATCGTAGCATG 58.259 37.500 20.03 15.60 0.00 4.06
1749 2682 7.668492 TCGTGAGATAAGAGTAGCTCTATACA 58.332 38.462 0.00 0.00 42.25 2.29
1772 2705 8.965986 TTATATGAAGACGAGATGGTTTATCG 57.034 34.615 0.00 0.00 40.86 2.92
1776 2709 6.821388 AGCTTATATGAAGACGAGATGGTTT 58.179 36.000 0.00 0.00 0.00 3.27
1783 2716 4.752101 CCCCAAAGCTTATATGAAGACGAG 59.248 45.833 0.00 0.00 0.00 4.18
1787 2720 4.229582 ACACCCCCAAAGCTTATATGAAGA 59.770 41.667 0.00 0.00 0.00 2.87
1802 2735 1.727062 AAATTGCAATCACACCCCCA 58.273 45.000 13.38 0.00 0.00 4.96
1803 2736 2.224499 ACAAAATTGCAATCACACCCCC 60.224 45.455 13.38 0.00 0.00 5.40
1804 2737 3.124578 ACAAAATTGCAATCACACCCC 57.875 42.857 13.38 0.00 0.00 4.95
1805 2738 3.303924 GCAACAAAATTGCAATCACACCC 60.304 43.478 13.38 0.00 44.34 4.61
1806 2739 3.875884 GCAACAAAATTGCAATCACACC 58.124 40.909 13.38 0.00 44.34 4.16
1815 2748 8.742554 ACTACTGTATTTAGCAACAAAATTGC 57.257 30.769 3.42 3.42 45.22 3.56
1831 2764 9.723601 GCCTAACAGATAGTACTACTACTGTAT 57.276 37.037 25.48 20.15 39.63 2.29
1832 2765 7.869937 CGCCTAACAGATAGTACTACTACTGTA 59.130 40.741 25.48 17.55 39.63 2.74
1833 2766 6.705381 CGCCTAACAGATAGTACTACTACTGT 59.295 42.308 22.39 22.39 40.89 3.55
1834 2767 6.927936 TCGCCTAACAGATAGTACTACTACTG 59.072 42.308 21.52 21.52 36.65 2.74
1835 2768 6.928492 GTCGCCTAACAGATAGTACTACTACT 59.072 42.308 4.31 2.73 32.84 2.57
1836 2769 6.703607 TGTCGCCTAACAGATAGTACTACTAC 59.296 42.308 4.31 0.33 32.84 2.73
1837 2770 6.820335 TGTCGCCTAACAGATAGTACTACTA 58.180 40.000 4.31 0.00 34.82 1.82
1849 2782 1.000955 ACCAAGTCTGTCGCCTAACAG 59.999 52.381 2.86 2.86 46.54 3.16
1882 2815 2.206900 TGGGCAGGAGAGTGGGAA 59.793 61.111 0.00 0.00 0.00 3.97
1883 2816 2.607750 GTGGGCAGGAGAGTGGGA 60.608 66.667 0.00 0.00 0.00 4.37
1889 2822 2.359169 GGTGATCGTGGGCAGGAGA 61.359 63.158 0.00 0.00 0.00 3.71
1933 2867 1.188863 GGGGTACATATATCGGCCGT 58.811 55.000 27.15 15.22 0.00 5.68
1954 2888 5.272402 TCTCATTGGATTCAGAGAGGTACA 58.728 41.667 0.00 0.00 32.57 2.90
1955 2889 5.860941 TCTCATTGGATTCAGAGAGGTAC 57.139 43.478 5.28 0.00 32.57 3.34
1956 2890 6.874278 TTTCTCATTGGATTCAGAGAGGTA 57.126 37.500 5.28 0.00 38.27 3.08
1957 2891 5.768980 TTTCTCATTGGATTCAGAGAGGT 57.231 39.130 5.28 0.00 38.27 3.85
1958 2892 7.656948 GTCTATTTCTCATTGGATTCAGAGAGG 59.343 40.741 5.28 0.00 38.27 3.69
1966 2900 7.058525 TGATGCAGTCTATTTCTCATTGGATT 58.941 34.615 0.00 0.00 0.00 3.01
1992 2936 9.823979 CGCCGCTATTTAAAACATTATTAAAAC 57.176 29.630 0.00 0.00 36.24 2.43
1993 2937 9.021863 CCGCCGCTATTTAAAACATTATTAAAA 57.978 29.630 0.00 0.00 36.24 1.52
1994 2938 8.404000 TCCGCCGCTATTTAAAACATTATTAAA 58.596 29.630 0.00 0.00 36.85 1.52
1995 2939 7.856894 GTCCGCCGCTATTTAAAACATTATTAA 59.143 33.333 0.00 0.00 0.00 1.40
1996 2940 7.354257 GTCCGCCGCTATTTAAAACATTATTA 58.646 34.615 0.00 0.00 0.00 0.98
1997 2941 6.203647 GTCCGCCGCTATTTAAAACATTATT 58.796 36.000 0.00 0.00 0.00 1.40
1998 2942 5.278120 GGTCCGCCGCTATTTAAAACATTAT 60.278 40.000 0.00 0.00 0.00 1.28
1999 2943 4.035441 GGTCCGCCGCTATTTAAAACATTA 59.965 41.667 0.00 0.00 0.00 1.90
2000 2944 3.181494 GGTCCGCCGCTATTTAAAACATT 60.181 43.478 0.00 0.00 0.00 2.71
2001 2945 2.356695 GGTCCGCCGCTATTTAAAACAT 59.643 45.455 0.00 0.00 0.00 2.71
2002 2946 1.738908 GGTCCGCCGCTATTTAAAACA 59.261 47.619 0.00 0.00 0.00 2.83
2003 2947 2.011947 AGGTCCGCCGCTATTTAAAAC 58.988 47.619 0.00 0.00 40.50 2.43
2004 2948 2.282407 GAGGTCCGCCGCTATTTAAAA 58.718 47.619 0.00 0.00 40.50 1.52
2005 2949 1.473788 GGAGGTCCGCCGCTATTTAAA 60.474 52.381 0.00 0.00 40.50 1.52
2006 2950 0.105408 GGAGGTCCGCCGCTATTTAA 59.895 55.000 0.00 0.00 40.50 1.52
2007 2951 1.044231 TGGAGGTCCGCCGCTATTTA 61.044 55.000 7.20 0.00 40.50 1.40
2008 2952 1.906105 TTGGAGGTCCGCCGCTATTT 61.906 55.000 7.20 0.00 40.50 1.40
2009 2953 1.906105 TTTGGAGGTCCGCCGCTATT 61.906 55.000 7.20 0.00 40.50 1.73
2010 2954 1.696097 ATTTGGAGGTCCGCCGCTAT 61.696 55.000 7.20 0.00 40.50 2.97
2011 2955 2.306255 GATTTGGAGGTCCGCCGCTA 62.306 60.000 7.20 0.00 40.50 4.26
2012 2956 3.682292 GATTTGGAGGTCCGCCGCT 62.682 63.158 7.20 0.00 40.50 5.52
2013 2957 3.202706 GATTTGGAGGTCCGCCGC 61.203 66.667 7.20 0.00 40.50 6.53
2014 2958 1.815421 CTGATTTGGAGGTCCGCCG 60.815 63.158 7.20 0.00 40.50 6.46
2015 2959 0.322546 AACTGATTTGGAGGTCCGCC 60.323 55.000 4.35 4.35 39.43 6.13
2016 2960 2.396590 TAACTGATTTGGAGGTCCGC 57.603 50.000 0.00 0.00 39.43 5.54
2017 2961 4.058817 GCTATAACTGATTTGGAGGTCCG 58.941 47.826 0.00 0.00 39.43 4.79
2018 2962 4.058817 CGCTATAACTGATTTGGAGGTCC 58.941 47.826 0.00 0.00 0.00 4.46
2019 2963 4.945246 TCGCTATAACTGATTTGGAGGTC 58.055 43.478 0.00 0.00 0.00 3.85
2020 2964 5.353394 TTCGCTATAACTGATTTGGAGGT 57.647 39.130 0.00 0.00 0.00 3.85
2021 2965 4.212214 GCTTCGCTATAACTGATTTGGAGG 59.788 45.833 0.00 0.00 0.00 4.30
2022 2966 5.053145 AGCTTCGCTATAACTGATTTGGAG 58.947 41.667 0.00 0.00 36.99 3.86
2023 2967 5.023533 AGCTTCGCTATAACTGATTTGGA 57.976 39.130 0.00 0.00 36.99 3.53
2036 2980 1.621992 AGCCTGCTATAGCTTCGCTA 58.378 50.000 24.61 3.21 45.55 4.26
2037 2981 1.621992 TAGCCTGCTATAGCTTCGCT 58.378 50.000 26.06 26.06 43.41 4.93
2038 2982 2.663826 ATAGCCTGCTATAGCTTCGC 57.336 50.000 24.61 20.82 40.56 4.70
2045 2989 1.112113 GCCCGCTATAGCCTGCTATA 58.888 55.000 19.00 15.94 39.65 1.31
2046 2990 0.616111 AGCCCGCTATAGCCTGCTAT 60.616 55.000 25.96 15.41 40.93 2.97
2047 2991 0.039180 TAGCCCGCTATAGCCTGCTA 59.961 55.000 26.87 26.87 42.16 3.49
2048 2992 0.616111 ATAGCCCGCTATAGCCTGCT 60.616 55.000 28.43 28.43 43.69 4.24
2049 2993 0.250513 AATAGCCCGCTATAGCCTGC 59.749 55.000 19.00 19.65 38.20 4.85
2050 2994 2.289694 ACAAATAGCCCGCTATAGCCTG 60.290 50.000 19.00 11.03 38.20 4.85
2051 2995 1.978580 ACAAATAGCCCGCTATAGCCT 59.021 47.619 19.00 12.46 38.20 4.58
2052 2996 2.474410 ACAAATAGCCCGCTATAGCC 57.526 50.000 19.00 5.28 38.20 3.93
2053 2997 5.642063 TCATTTACAAATAGCCCGCTATAGC 59.358 40.000 15.09 15.09 38.20 2.97
2054 2998 7.097192 TCTCATTTACAAATAGCCCGCTATAG 58.903 38.462 9.56 8.22 38.20 1.31
2055 2999 6.999950 TCTCATTTACAAATAGCCCGCTATA 58.000 36.000 9.56 0.00 38.20 1.31
2056 3000 5.865085 TCTCATTTACAAATAGCCCGCTAT 58.135 37.500 3.31 3.31 40.63 2.97
2057 3001 5.284861 TCTCATTTACAAATAGCCCGCTA 57.715 39.130 0.00 0.00 0.00 4.26
2058 3002 4.150897 TCTCATTTACAAATAGCCCGCT 57.849 40.909 0.00 0.00 0.00 5.52
2059 3003 4.515191 TGATCTCATTTACAAATAGCCCGC 59.485 41.667 0.00 0.00 0.00 6.13
2060 3004 6.808008 ATGATCTCATTTACAAATAGCCCG 57.192 37.500 0.00 0.00 31.37 6.13
2072 3016 9.707269 GCAGGTTGCTGCTAAATGATCTCATTT 62.707 40.741 19.03 19.03 46.82 2.32
2073 3017 8.341395 GCAGGTTGCTGCTAAATGATCTCATT 62.341 42.308 0.00 0.00 45.57 2.57
2074 3018 4.579340 CAGGTTGCTGCTAAATGATCTCAT 59.421 41.667 0.00 0.00 38.41 2.90
2075 3019 3.943381 CAGGTTGCTGCTAAATGATCTCA 59.057 43.478 0.00 0.00 0.00 3.27
2076 3020 3.243002 GCAGGTTGCTGCTAAATGATCTC 60.243 47.826 0.00 0.00 46.04 2.75
2077 3021 2.686915 GCAGGTTGCTGCTAAATGATCT 59.313 45.455 0.00 0.00 46.04 2.75
2078 3022 3.075866 GCAGGTTGCTGCTAAATGATC 57.924 47.619 0.00 0.00 46.04 2.92
2090 3034 0.609131 TAGCCCTTTCAGCAGGTTGC 60.609 55.000 0.00 0.00 45.46 4.17
2091 3035 2.134789 ATAGCCCTTTCAGCAGGTTG 57.865 50.000 0.00 0.00 30.96 3.77
2092 3036 2.422093 GCTATAGCCCTTTCAGCAGGTT 60.422 50.000 14.13 0.00 34.31 3.50
2093 3037 1.141858 GCTATAGCCCTTTCAGCAGGT 59.858 52.381 14.13 0.00 34.31 4.00
2094 3038 1.889545 GCTATAGCCCTTTCAGCAGG 58.110 55.000 14.13 0.00 34.31 4.85
2107 3051 2.865343 CGGCTATAACGGGGCTATAG 57.135 55.000 0.00 0.00 33.99 1.31
2116 3060 6.535274 AGTTTTAAATAGCCGGCTATAACG 57.465 37.500 41.53 0.00 38.20 3.18
2117 3061 8.448615 CCATAGTTTTAAATAGCCGGCTATAAC 58.551 37.037 41.53 36.86 38.20 1.89
2118 3062 8.158789 ACCATAGTTTTAAATAGCCGGCTATAA 58.841 33.333 41.53 31.52 38.20 0.98
2119 3063 7.682628 ACCATAGTTTTAAATAGCCGGCTATA 58.317 34.615 41.53 28.18 38.20 1.31
2120 3064 6.540083 ACCATAGTTTTAAATAGCCGGCTAT 58.460 36.000 37.79 37.79 40.63 2.97
2121 3065 5.932455 ACCATAGTTTTAAATAGCCGGCTA 58.068 37.500 36.88 36.88 0.00 3.93
2122 3066 4.788679 ACCATAGTTTTAAATAGCCGGCT 58.211 39.130 34.85 34.85 0.00 5.52
2123 3067 5.509716 AACCATAGTTTTAAATAGCCGGC 57.490 39.130 21.89 21.89 29.61 6.13
2137 3081 9.435570 AGTAGAGATACCATGTAAAACCATAGT 57.564 33.333 0.00 0.00 0.00 2.12
2138 3082 9.915629 GAGTAGAGATACCATGTAAAACCATAG 57.084 37.037 0.00 0.00 0.00 2.23
2139 3083 9.656323 AGAGTAGAGATACCATGTAAAACCATA 57.344 33.333 0.00 0.00 0.00 2.74
2140 3084 8.554490 AGAGTAGAGATACCATGTAAAACCAT 57.446 34.615 0.00 0.00 0.00 3.55
2141 3085 7.973048 AGAGTAGAGATACCATGTAAAACCA 57.027 36.000 0.00 0.00 0.00 3.67
2200 3144 5.106791 CGGACGGTCTATATTACAAGACGAT 60.107 44.000 8.23 0.00 42.51 3.73
2201 3145 4.212004 CGGACGGTCTATATTACAAGACGA 59.788 45.833 8.23 0.00 42.51 4.20
2203 3147 5.679734 TCGGACGGTCTATATTACAAGAC 57.320 43.478 8.23 0.00 41.16 3.01
2407 3356 1.620589 AGGCATGGGGATGGACAGT 60.621 57.895 0.00 0.00 0.00 3.55
2409 3358 2.386100 GGAGGCATGGGGATGGACA 61.386 63.158 0.00 0.00 0.00 4.02
2502 3451 6.092259 CGGAAAACTGGTATCTCGAGAATTTT 59.908 38.462 20.91 17.02 0.00 1.82
2667 3616 0.190815 ATGGCAAGGGAAGTGGGTTT 59.809 50.000 0.00 0.00 0.00 3.27
2668 3617 0.542702 CATGGCAAGGGAAGTGGGTT 60.543 55.000 0.00 0.00 0.00 4.11
2672 3621 0.321564 TCGTCATGGCAAGGGAAGTG 60.322 55.000 0.00 0.00 0.00 3.16
2673 3622 0.400213 TTCGTCATGGCAAGGGAAGT 59.600 50.000 0.00 0.00 0.00 3.01
2681 3630 2.358125 CCGGTGTTCGTCATGGCA 60.358 61.111 0.00 0.00 37.11 4.92
2700 3649 2.936032 AGGAGGAGGTGGTTGCCC 60.936 66.667 0.00 0.00 0.00 5.36
2703 3652 2.239681 AGTAGAGGAGGAGGTGGTTG 57.760 55.000 0.00 0.00 0.00 3.77
2716 3665 1.394618 CGGACCTCTGGGAAGTAGAG 58.605 60.000 0.00 0.00 41.03 2.43
2719 3668 1.684734 GGCGGACCTCTGGGAAGTA 60.685 63.158 0.00 0.00 36.25 2.24
2720 3669 3.003763 GGCGGACCTCTGGGAAGT 61.004 66.667 0.00 0.00 36.25 3.01
2721 3670 2.124507 TTTGGCGGACCTCTGGGAAG 62.125 60.000 0.00 0.00 36.63 3.46
2722 3671 2.150719 TTTGGCGGACCTCTGGGAA 61.151 57.895 0.00 0.00 36.63 3.97
2723 3672 2.528127 TTTGGCGGACCTCTGGGA 60.528 61.111 0.00 0.00 36.63 4.37
2724 3673 2.359975 GTTTGGCGGACCTCTGGG 60.360 66.667 0.00 0.00 36.63 4.45
2725 3674 2.359975 GGTTTGGCGGACCTCTGG 60.360 66.667 2.17 0.00 36.63 3.86
2726 3675 2.742372 CGGTTTGGCGGACCTCTG 60.742 66.667 7.39 0.00 36.63 3.35
2727 3676 3.236003 GACGGTTTGGCGGACCTCT 62.236 63.158 7.39 0.00 36.63 3.69
2728 3677 2.741211 GACGGTTTGGCGGACCTC 60.741 66.667 7.39 1.67 36.63 3.85
2729 3678 4.324991 GGACGGTTTGGCGGACCT 62.325 66.667 7.39 0.00 36.63 3.85
2731 3680 3.912745 ATGGGACGGTTTGGCGGAC 62.913 63.158 0.00 0.00 0.00 4.79
2732 3681 3.642503 ATGGGACGGTTTGGCGGA 61.643 61.111 0.00 0.00 0.00 5.54
2733 3682 3.439540 CATGGGACGGTTTGGCGG 61.440 66.667 0.00 0.00 0.00 6.13
2734 3683 2.359354 TCATGGGACGGTTTGGCG 60.359 61.111 0.00 0.00 0.00 5.69
2735 3684 2.340328 GGTCATGGGACGGTTTGGC 61.340 63.158 0.00 0.00 45.28 4.52
2736 3685 2.038269 CGGTCATGGGACGGTTTGG 61.038 63.158 0.00 0.00 45.28 3.28
2737 3686 2.038269 CCGGTCATGGGACGGTTTG 61.038 63.158 13.23 0.00 45.28 2.93
2738 3687 2.349755 CCGGTCATGGGACGGTTT 59.650 61.111 13.23 0.00 45.28 3.27
2739 3688 4.404098 GCCGGTCATGGGACGGTT 62.404 66.667 19.56 0.00 45.28 4.44
2743 3692 4.832608 GGACGCCGGTCATGGGAC 62.833 72.222 1.90 0.00 45.28 4.46
2745 3694 3.910914 TTTGGACGCCGGTCATGGG 62.911 63.158 1.90 0.00 45.28 4.00
2746 3695 1.714899 GATTTGGACGCCGGTCATGG 61.715 60.000 1.90 0.00 45.28 3.66
2747 3696 0.744414 AGATTTGGACGCCGGTCATG 60.744 55.000 1.90 0.00 45.28 3.07
2748 3697 0.462047 GAGATTTGGACGCCGGTCAT 60.462 55.000 1.90 0.00 45.28 3.06
2749 3698 1.079405 GAGATTTGGACGCCGGTCA 60.079 57.895 1.90 0.00 45.28 4.02
2750 3699 0.806492 GAGAGATTTGGACGCCGGTC 60.806 60.000 1.90 0.00 42.66 4.79
2751 3700 1.218316 GAGAGATTTGGACGCCGGT 59.782 57.895 1.90 0.00 0.00 5.28
2752 3701 1.521681 GGAGAGATTTGGACGCCGG 60.522 63.158 0.00 0.00 0.00 6.13
2753 3702 0.528684 GAGGAGAGATTTGGACGCCG 60.529 60.000 0.00 0.00 0.00 6.46
2754 3703 0.827368 AGAGGAGAGATTTGGACGCC 59.173 55.000 0.00 0.00 0.00 5.68
2755 3704 2.275318 CAAGAGGAGAGATTTGGACGC 58.725 52.381 0.00 0.00 0.00 5.19
2756 3705 2.275318 GCAAGAGGAGAGATTTGGACG 58.725 52.381 0.00 0.00 0.00 4.79
2757 3706 2.026822 TGGCAAGAGGAGAGATTTGGAC 60.027 50.000 0.00 0.00 0.00 4.02
2758 3707 2.026822 GTGGCAAGAGGAGAGATTTGGA 60.027 50.000 0.00 0.00 0.00 3.53
2759 3708 2.026449 AGTGGCAAGAGGAGAGATTTGG 60.026 50.000 0.00 0.00 0.00 3.28
2760 3709 3.008330 CAGTGGCAAGAGGAGAGATTTG 58.992 50.000 0.00 0.00 0.00 2.32
2761 3710 2.617532 GCAGTGGCAAGAGGAGAGATTT 60.618 50.000 0.00 0.00 40.72 2.17
2762 3711 1.065564 GCAGTGGCAAGAGGAGAGATT 60.066 52.381 0.00 0.00 40.72 2.40
2763 3712 0.540923 GCAGTGGCAAGAGGAGAGAT 59.459 55.000 0.00 0.00 40.72 2.75
2764 3713 1.548357 GGCAGTGGCAAGAGGAGAGA 61.548 60.000 12.58 0.00 43.71 3.10
2765 3714 1.078567 GGCAGTGGCAAGAGGAGAG 60.079 63.158 12.58 0.00 43.71 3.20
2766 3715 2.596851 GGGCAGTGGCAAGAGGAGA 61.597 63.158 19.48 0.00 43.71 3.71
2775 3724 4.416738 GGTGAGAGGGGCAGTGGC 62.417 72.222 8.47 8.47 40.13 5.01
2777 3726 4.087892 CCGGTGAGAGGGGCAGTG 62.088 72.222 0.00 0.00 0.00 3.66
2832 3782 0.035343 GGTAGAAGAGGTTGGGCCAC 60.035 60.000 5.23 0.85 40.61 5.01
2833 3783 1.205460 GGGTAGAAGAGGTTGGGCCA 61.205 60.000 0.00 0.00 40.61 5.36
2834 3784 0.914902 AGGGTAGAAGAGGTTGGGCC 60.915 60.000 0.00 0.00 37.58 5.80
2835 3785 0.542333 GAGGGTAGAAGAGGTTGGGC 59.458 60.000 0.00 0.00 0.00 5.36
2838 3788 1.477295 GGACGAGGGTAGAAGAGGTTG 59.523 57.143 0.00 0.00 0.00 3.77
2839 3789 1.358445 AGGACGAGGGTAGAAGAGGTT 59.642 52.381 0.00 0.00 0.00 3.50
2840 3790 1.001282 AGGACGAGGGTAGAAGAGGT 58.999 55.000 0.00 0.00 0.00 3.85
2848 3798 2.203584 AGAGAAGGTAGGACGAGGGTA 58.796 52.381 0.00 0.00 0.00 3.69
2868 3818 4.394729 GGTAATGGTGTCACTGAAGGAAA 58.605 43.478 2.35 0.00 0.00 3.13
2869 3819 3.556213 CGGTAATGGTGTCACTGAAGGAA 60.556 47.826 2.35 0.00 0.00 3.36
2870 3820 2.028476 CGGTAATGGTGTCACTGAAGGA 60.028 50.000 2.35 0.00 0.00 3.36
2871 3821 2.028476 TCGGTAATGGTGTCACTGAAGG 60.028 50.000 2.35 0.00 0.00 3.46
2878 3831 2.354303 GGTGATGTCGGTAATGGTGTCA 60.354 50.000 0.00 0.00 0.00 3.58
2893 3846 0.557238 TGGGGATGAATGGGGTGATG 59.443 55.000 0.00 0.00 0.00 3.07
2909 3862 0.811219 TTGAGATCAAGCGCGATGGG 60.811 55.000 12.10 0.00 0.00 4.00
2914 3867 1.059994 GCTGTTGAGATCAAGCGCG 59.940 57.895 0.00 0.00 36.39 6.86
2916 3869 0.445436 GTGGCTGTTGAGATCAAGCG 59.555 55.000 0.00 0.00 36.39 4.68
2917 3870 1.527034 TGTGGCTGTTGAGATCAAGC 58.473 50.000 0.00 0.00 36.39 4.01
2923 3876 4.041075 TGGTAGTAATTGTGGCTGTTGAGA 59.959 41.667 0.00 0.00 0.00 3.27
2944 3897 0.664761 CAAATAGATGGCGCCAGTGG 59.335 55.000 35.36 15.18 0.00 4.00
2959 3912 4.334759 CAGCGACCAAGATGAATCTCAAAT 59.665 41.667 0.00 0.00 35.76 2.32
2971 3924 0.320771 GGAAAGAGCAGCGACCAAGA 60.321 55.000 0.00 0.00 0.00 3.02
2980 3933 2.775911 TGTGATGGAGGAAAGAGCAG 57.224 50.000 0.00 0.00 0.00 4.24
2985 3938 4.070716 GCCATAGATGTGATGGAGGAAAG 58.929 47.826 5.84 0.00 45.89 2.62
2987 3940 2.037641 CGCCATAGATGTGATGGAGGAA 59.962 50.000 5.84 0.00 45.89 3.36
2989 3942 1.620323 TCGCCATAGATGTGATGGAGG 59.380 52.381 5.84 0.00 45.89 4.30
2992 3945 2.138320 GTGTCGCCATAGATGTGATGG 58.862 52.381 0.00 0.00 45.79 3.51
3003 3956 3.249189 AGGGTGGTGTGTCGCCAT 61.249 61.111 5.34 0.00 46.11 4.40
3004 3957 3.936203 GAGGGTGGTGTGTCGCCA 61.936 66.667 0.00 0.00 42.15 5.69
3022 3975 4.275508 CAGCGGGGATCATGGGGG 62.276 72.222 0.00 0.00 0.00 5.40
3073 4026 1.226888 GGTCGAGATGCGGGTGTAC 60.227 63.158 0.00 0.00 41.33 2.90
3079 4032 3.815569 GAGCTCGGTCGAGATGCGG 62.816 68.421 22.51 0.00 41.31 5.69
3082 4035 1.098129 TGAGGAGCTCGGTCGAGATG 61.098 60.000 22.51 0.00 41.31 2.90
3085 4038 0.030101 GATTGAGGAGCTCGGTCGAG 59.970 60.000 15.19 15.19 44.56 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.