Multiple sequence alignment - TraesCS1D01G347900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G347900 chr1D 100.000 2913 0 0 1 2913 435049220 435052132 0.000000e+00 5380
1 TraesCS1D01G347900 chr1D 92.034 477 36 1 1 477 435309800 435310274 0.000000e+00 669
2 TraesCS1D01G347900 chr1A 93.044 1452 83 9 1467 2913 532672891 532674329 0.000000e+00 2106
3 TraesCS1D01G347900 chr1A 86.323 1806 183 41 585 2361 532713332 532715102 0.000000e+00 1908
4 TraesCS1D01G347900 chr1A 92.892 1013 52 8 472 1468 532671789 532672797 0.000000e+00 1454
5 TraesCS1D01G347900 chr1A 87.879 99 6 4 475 573 532713009 532713101 8.530000e-21 111
6 TraesCS1D01G347900 chr1B 89.078 1703 138 29 472 2164 588447468 588449132 0.000000e+00 2071
7 TraesCS1D01G347900 chr3B 92.662 477 34 1 1 476 325854971 325855447 0.000000e+00 686
8 TraesCS1D01G347900 chr3B 91.824 477 37 1 1 477 39387815 39388289 0.000000e+00 664
9 TraesCS1D01G347900 chr7A 92.292 480 33 3 1 479 581695979 581696455 0.000000e+00 678
10 TraesCS1D01G347900 chr7D 92.259 478 36 1 1 477 438723074 438723551 0.000000e+00 676
11 TraesCS1D01G347900 chr3D 92.243 477 34 2 1 477 583226164 583225691 0.000000e+00 673
12 TraesCS1D01G347900 chr6B 91.858 479 38 1 1 479 546658630 546659107 0.000000e+00 667
13 TraesCS1D01G347900 chr3A 91.875 480 35 3 1 479 719826102 719825626 0.000000e+00 667
14 TraesCS1D01G347900 chr2D 92.017 476 35 3 3 476 387225894 387225420 0.000000e+00 665


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G347900 chr1D 435049220 435052132 2912 False 5380.0 5380 100.000 1 2913 1 chr1D.!!$F1 2912
1 TraesCS1D01G347900 chr1A 532671789 532674329 2540 False 1780.0 2106 92.968 472 2913 2 chr1A.!!$F1 2441
2 TraesCS1D01G347900 chr1A 532713009 532715102 2093 False 1009.5 1908 87.101 475 2361 2 chr1A.!!$F2 1886
3 TraesCS1D01G347900 chr1B 588447468 588449132 1664 False 2071.0 2071 89.078 472 2164 1 chr1B.!!$F1 1692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.030235 GTGTTGGCCGAGGTGAAAAC 59.970 55.0 0.0 0.0 0.0 2.43 F
272 273 0.032952 CGGTGTCGTTCCTTTCCTGA 59.967 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 1509 0.173708 CACTTACCGAGAGAGCCACC 59.826 60.0 0.0 0.0 0.0 4.61 R
2258 2628 0.802494 GTTGGCCGATTGTGTGGTAG 59.198 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.314440 GTGGTGCTCGTGGGCAGA 62.314 66.667 0.00 0.00 43.25 4.26
23 24 4.007644 TGGTGCTCGTGGGCAGAG 62.008 66.667 0.00 0.00 43.25 3.35
48 49 4.641645 CTTGGTGCTGCCCGGTCA 62.642 66.667 0.00 0.00 36.04 4.02
49 50 4.947147 TTGGTGCTGCCCGGTCAC 62.947 66.667 0.00 2.70 36.04 3.67
52 53 4.722700 GTGCTGCCCGGTCACCAT 62.723 66.667 0.00 0.00 0.00 3.55
53 54 4.720902 TGCTGCCCGGTCACCATG 62.721 66.667 0.00 0.00 0.00 3.66
61 62 2.436646 GGTCACCATGGCCGTGAG 60.437 66.667 27.13 17.91 40.79 3.51
93 94 4.752879 CGGGGTGTGGCGTTCGAT 62.753 66.667 0.00 0.00 0.00 3.59
94 95 3.124921 GGGGTGTGGCGTTCGATG 61.125 66.667 0.00 0.00 0.00 3.84
95 96 3.124921 GGGTGTGGCGTTCGATGG 61.125 66.667 0.00 0.00 0.00 3.51
96 97 3.799755 GGTGTGGCGTTCGATGGC 61.800 66.667 4.97 4.97 0.00 4.40
97 98 4.147322 GTGTGGCGTTCGATGGCG 62.147 66.667 7.14 4.15 39.35 5.69
102 103 3.554692 GCGTTCGATGGCGGTGAG 61.555 66.667 0.00 0.00 38.28 3.51
103 104 2.126071 CGTTCGATGGCGGTGAGT 60.126 61.111 0.00 0.00 38.28 3.41
104 105 2.444624 CGTTCGATGGCGGTGAGTG 61.445 63.158 0.00 0.00 38.28 3.51
105 106 1.374252 GTTCGATGGCGGTGAGTGT 60.374 57.895 0.00 0.00 38.28 3.55
106 107 0.949105 GTTCGATGGCGGTGAGTGTT 60.949 55.000 0.00 0.00 38.28 3.32
107 108 0.948623 TTCGATGGCGGTGAGTGTTG 60.949 55.000 0.00 0.00 38.28 3.33
108 109 2.390599 CGATGGCGGTGAGTGTTGG 61.391 63.158 0.00 0.00 0.00 3.77
109 110 2.672996 ATGGCGGTGAGTGTTGGC 60.673 61.111 0.00 0.00 0.00 4.52
110 111 4.947147 TGGCGGTGAGTGTTGGCC 62.947 66.667 0.00 0.00 44.00 5.36
112 113 4.980805 GCGGTGAGTGTTGGCCGA 62.981 66.667 5.99 0.00 46.33 5.54
113 114 2.738521 CGGTGAGTGTTGGCCGAG 60.739 66.667 0.00 0.00 46.33 4.63
114 115 2.358737 GGTGAGTGTTGGCCGAGG 60.359 66.667 0.00 0.00 0.00 4.63
115 116 2.426023 GTGAGTGTTGGCCGAGGT 59.574 61.111 0.00 0.00 0.00 3.85
116 117 1.961277 GTGAGTGTTGGCCGAGGTG 60.961 63.158 0.00 0.00 0.00 4.00
117 118 2.137528 TGAGTGTTGGCCGAGGTGA 61.138 57.895 0.00 0.00 0.00 4.02
118 119 1.070786 GAGTGTTGGCCGAGGTGAA 59.929 57.895 0.00 0.00 0.00 3.18
119 120 0.534203 GAGTGTTGGCCGAGGTGAAA 60.534 55.000 0.00 0.00 0.00 2.69
120 121 0.106918 AGTGTTGGCCGAGGTGAAAA 60.107 50.000 0.00 0.00 0.00 2.29
121 122 0.030235 GTGTTGGCCGAGGTGAAAAC 59.970 55.000 0.00 0.00 0.00 2.43
122 123 1.104577 TGTTGGCCGAGGTGAAAACC 61.105 55.000 0.00 0.00 0.00 3.27
123 124 0.822121 GTTGGCCGAGGTGAAAACCT 60.822 55.000 0.00 0.00 44.06 3.50
124 125 0.821711 TTGGCCGAGGTGAAAACCTG 60.822 55.000 1.25 0.00 40.86 4.00
125 126 1.228154 GGCCGAGGTGAAAACCTGT 60.228 57.895 1.25 0.00 40.86 4.00
126 127 0.822121 GGCCGAGGTGAAAACCTGTT 60.822 55.000 1.25 0.00 40.86 3.16
127 128 0.591659 GCCGAGGTGAAAACCTGTTC 59.408 55.000 1.25 0.00 40.86 3.18
128 129 1.814248 GCCGAGGTGAAAACCTGTTCT 60.814 52.381 1.25 0.00 40.86 3.01
129 130 2.549349 GCCGAGGTGAAAACCTGTTCTA 60.549 50.000 1.25 0.00 40.86 2.10
130 131 3.868754 GCCGAGGTGAAAACCTGTTCTAT 60.869 47.826 1.25 0.00 40.86 1.98
131 132 3.933332 CCGAGGTGAAAACCTGTTCTATC 59.067 47.826 1.25 0.00 40.86 2.08
132 133 4.322801 CCGAGGTGAAAACCTGTTCTATCT 60.323 45.833 1.25 0.00 40.86 1.98
133 134 5.238583 CGAGGTGAAAACCTGTTCTATCTT 58.761 41.667 1.25 0.00 40.86 2.40
134 135 5.348997 CGAGGTGAAAACCTGTTCTATCTTC 59.651 44.000 1.25 0.00 40.86 2.87
135 136 5.238583 AGGTGAAAACCTGTTCTATCTTCG 58.761 41.667 0.00 0.00 38.98 3.79
136 137 4.392138 GGTGAAAACCTGTTCTATCTTCGG 59.608 45.833 0.00 0.00 0.00 4.30
137 138 5.235516 GTGAAAACCTGTTCTATCTTCGGA 58.764 41.667 0.00 0.00 0.00 4.55
138 139 5.120363 GTGAAAACCTGTTCTATCTTCGGAC 59.880 44.000 0.00 0.00 0.00 4.79
139 140 3.505464 AACCTGTTCTATCTTCGGACG 57.495 47.619 0.00 0.00 0.00 4.79
140 141 1.749634 ACCTGTTCTATCTTCGGACGG 59.250 52.381 0.00 0.00 0.00 4.79
141 142 2.022195 CCTGTTCTATCTTCGGACGGA 58.978 52.381 0.00 0.00 0.00 4.69
142 143 2.223525 CCTGTTCTATCTTCGGACGGAC 60.224 54.545 0.00 0.00 0.00 4.79
143 144 1.747355 TGTTCTATCTTCGGACGGACC 59.253 52.381 0.00 0.00 0.00 4.46
163 164 3.617538 CGGCGGCGAAGATCGTTC 61.618 66.667 29.19 0.00 42.81 3.95
164 165 2.202756 GGCGGCGAAGATCGTTCT 60.203 61.111 12.98 0.00 42.81 3.01
165 166 2.231618 GGCGGCGAAGATCGTTCTC 61.232 63.158 12.98 0.00 42.81 2.87
166 167 1.226717 GCGGCGAAGATCGTTCTCT 60.227 57.895 12.98 0.00 42.81 3.10
167 168 0.802607 GCGGCGAAGATCGTTCTCTT 60.803 55.000 12.98 0.00 42.81 2.85
168 169 1.192793 CGGCGAAGATCGTTCTCTTC 58.807 55.000 0.00 12.20 45.03 2.87
169 170 1.202200 CGGCGAAGATCGTTCTCTTCT 60.202 52.381 0.00 0.00 45.88 2.85
170 171 2.732597 CGGCGAAGATCGTTCTCTTCTT 60.733 50.000 0.00 0.00 45.88 2.52
171 172 2.600867 GGCGAAGATCGTTCTCTTCTTG 59.399 50.000 16.95 8.46 45.88 3.02
172 173 3.502920 GCGAAGATCGTTCTCTTCTTGA 58.497 45.455 16.95 0.00 45.88 3.02
173 174 3.921021 GCGAAGATCGTTCTCTTCTTGAA 59.079 43.478 16.95 0.00 45.88 2.69
174 175 4.031201 GCGAAGATCGTTCTCTTCTTGAAG 59.969 45.833 16.95 4.13 45.88 3.02
175 176 5.157781 CGAAGATCGTTCTCTTCTTGAAGT 58.842 41.667 16.95 0.00 45.88 3.01
176 177 5.285134 CGAAGATCGTTCTCTTCTTGAAGTC 59.715 44.000 16.95 0.00 45.88 3.01
177 178 4.728534 AGATCGTTCTCTTCTTGAAGTCG 58.271 43.478 9.80 10.29 0.00 4.18
178 179 3.984508 TCGTTCTCTTCTTGAAGTCGT 57.015 42.857 9.80 0.00 0.00 4.34
179 180 3.886549 TCGTTCTCTTCTTGAAGTCGTC 58.113 45.455 9.80 1.16 0.00 4.20
180 181 2.652642 CGTTCTCTTCTTGAAGTCGTCG 59.347 50.000 9.80 7.83 0.00 5.12
181 182 3.630101 GTTCTCTTCTTGAAGTCGTCGT 58.370 45.455 9.80 0.00 0.00 4.34
182 183 3.539431 TCTCTTCTTGAAGTCGTCGTC 57.461 47.619 9.80 0.00 0.00 4.20
183 184 2.096367 TCTCTTCTTGAAGTCGTCGTCG 60.096 50.000 9.80 0.00 38.55 5.12
184 185 0.703466 CTTCTTGAAGTCGTCGTCGC 59.297 55.000 0.00 0.00 36.96 5.19
185 186 0.995234 TTCTTGAAGTCGTCGTCGCG 60.995 55.000 0.00 0.00 36.96 5.87
186 187 2.426183 CTTGAAGTCGTCGTCGCGG 61.426 63.158 6.13 0.00 36.96 6.46
190 191 4.338539 AGTCGTCGTCGCGGCTTT 62.339 61.111 9.90 0.00 45.10 3.51
191 192 3.824510 GTCGTCGTCGCGGCTTTC 61.825 66.667 9.90 0.00 36.96 2.62
192 193 4.331166 TCGTCGTCGCGGCTTTCA 62.331 61.111 9.90 0.00 36.96 2.69
193 194 3.179265 CGTCGTCGCGGCTTTCAT 61.179 61.111 9.90 0.00 0.00 2.57
194 195 2.726691 CGTCGTCGCGGCTTTCATT 61.727 57.895 9.90 0.00 0.00 2.57
195 196 1.225745 GTCGTCGCGGCTTTCATTG 60.226 57.895 9.90 0.00 0.00 2.82
196 197 2.574212 CGTCGCGGCTTTCATTGC 60.574 61.111 9.90 0.00 0.00 3.56
197 198 2.202479 GTCGCGGCTTTCATTGCC 60.202 61.111 1.90 0.00 46.42 4.52
202 203 3.680156 GGCTTTCATTGCCCGTCA 58.320 55.556 0.00 0.00 44.32 4.35
203 204 2.192605 GGCTTTCATTGCCCGTCAT 58.807 52.632 0.00 0.00 44.32 3.06
204 205 0.179129 GGCTTTCATTGCCCGTCATG 60.179 55.000 0.00 0.00 44.32 3.07
205 206 0.803380 GCTTTCATTGCCCGTCATGC 60.803 55.000 0.00 0.00 0.00 4.06
206 207 0.523968 CTTTCATTGCCCGTCATGCG 60.524 55.000 3.02 3.02 40.95 4.73
235 236 4.769345 AGGAAACTCTGATCCTTGGATC 57.231 45.455 19.70 19.70 43.59 3.36
236 237 3.133721 AGGAAACTCTGATCCTTGGATCG 59.866 47.826 20.69 16.06 43.59 3.69
237 238 3.462021 GAAACTCTGATCCTTGGATCGG 58.538 50.000 25.14 25.14 38.86 4.18
238 239 1.418334 ACTCTGATCCTTGGATCGGG 58.582 55.000 28.36 22.56 38.24 5.14
239 240 0.034616 CTCTGATCCTTGGATCGGGC 59.965 60.000 28.36 8.40 38.24 6.13
240 241 1.301244 CTGATCCTTGGATCGGGCG 60.301 63.158 23.98 10.55 35.02 6.13
241 242 2.031163 GATCCTTGGATCGGGCGG 59.969 66.667 13.16 0.00 0.00 6.13
242 243 2.768344 ATCCTTGGATCGGGCGGT 60.768 61.111 0.00 0.00 0.00 5.68
243 244 2.996168 GATCCTTGGATCGGGCGGTG 62.996 65.000 13.16 0.00 0.00 4.94
244 245 4.856801 CCTTGGATCGGGCGGTGG 62.857 72.222 0.00 0.00 0.00 4.61
267 268 2.663852 CGCCGGTGTCGTTCCTTT 60.664 61.111 6.91 0.00 33.95 3.11
268 269 2.664436 CGCCGGTGTCGTTCCTTTC 61.664 63.158 6.91 0.00 33.95 2.62
269 270 2.322830 GCCGGTGTCGTTCCTTTCC 61.323 63.158 1.90 0.00 33.95 3.13
270 271 1.370064 CCGGTGTCGTTCCTTTCCT 59.630 57.895 0.00 0.00 33.95 3.36
271 272 0.949105 CCGGTGTCGTTCCTTTCCTG 60.949 60.000 0.00 0.00 33.95 3.86
272 273 0.032952 CGGTGTCGTTCCTTTCCTGA 59.967 55.000 0.00 0.00 0.00 3.86
273 274 1.539496 CGGTGTCGTTCCTTTCCTGAA 60.539 52.381 0.00 0.00 0.00 3.02
274 275 2.143925 GGTGTCGTTCCTTTCCTGAAG 58.856 52.381 0.00 0.00 35.02 3.02
282 283 3.256281 CTTTCCTGAAGGAGCCACC 57.744 57.895 0.00 0.00 46.36 4.61
292 293 4.704833 GAGCCACCTTGGAGCGCA 62.705 66.667 11.47 0.00 40.96 6.09
293 294 3.984193 GAGCCACCTTGGAGCGCAT 62.984 63.158 11.47 0.00 40.96 4.73
294 295 3.818787 GCCACCTTGGAGCGCATG 61.819 66.667 11.47 0.00 40.96 4.06
295 296 2.046023 CCACCTTGGAGCGCATGA 60.046 61.111 11.47 0.00 40.96 3.07
296 297 1.452651 CCACCTTGGAGCGCATGAT 60.453 57.895 11.47 0.00 40.96 2.45
297 298 1.033746 CCACCTTGGAGCGCATGATT 61.034 55.000 11.47 0.00 40.96 2.57
298 299 0.379669 CACCTTGGAGCGCATGATTC 59.620 55.000 11.47 0.00 0.00 2.52
299 300 1.091771 ACCTTGGAGCGCATGATTCG 61.092 55.000 11.47 0.00 0.00 3.34
300 301 1.091771 CCTTGGAGCGCATGATTCGT 61.092 55.000 11.47 0.00 0.00 3.85
301 302 0.302890 CTTGGAGCGCATGATTCGTC 59.697 55.000 11.47 0.00 0.00 4.20
302 303 0.390998 TTGGAGCGCATGATTCGTCA 60.391 50.000 11.47 0.00 0.00 4.35
303 304 0.179076 TGGAGCGCATGATTCGTCAT 60.179 50.000 11.47 0.00 0.00 3.06
304 305 1.068434 TGGAGCGCATGATTCGTCATA 59.932 47.619 11.47 0.00 0.00 2.15
305 306 2.289010 TGGAGCGCATGATTCGTCATAT 60.289 45.455 11.47 0.00 0.00 1.78
306 307 2.093310 GGAGCGCATGATTCGTCATATG 59.907 50.000 11.47 0.00 0.00 1.78
307 308 2.733552 GAGCGCATGATTCGTCATATGT 59.266 45.455 11.47 0.00 0.00 2.29
308 309 3.913089 AGCGCATGATTCGTCATATGTA 58.087 40.909 11.47 0.00 0.00 2.29
309 310 3.922850 AGCGCATGATTCGTCATATGTAG 59.077 43.478 11.47 0.00 0.00 2.74
310 311 3.482598 GCGCATGATTCGTCATATGTAGC 60.483 47.826 0.30 0.00 0.00 3.58
311 312 3.922850 CGCATGATTCGTCATATGTAGCT 59.077 43.478 1.90 0.00 0.00 3.32
312 313 4.386954 CGCATGATTCGTCATATGTAGCTT 59.613 41.667 1.90 0.00 0.00 3.74
313 314 5.443824 CGCATGATTCGTCATATGTAGCTTC 60.444 44.000 1.90 0.00 0.00 3.86
314 315 5.406477 GCATGATTCGTCATATGTAGCTTCA 59.594 40.000 1.90 0.00 0.00 3.02
315 316 6.091849 GCATGATTCGTCATATGTAGCTTCAT 59.908 38.462 10.88 10.88 0.00 2.57
316 317 7.673545 GCATGATTCGTCATATGTAGCTTCATC 60.674 40.741 9.33 0.00 0.00 2.92
317 318 6.986250 TGATTCGTCATATGTAGCTTCATCT 58.014 36.000 9.33 0.00 0.00 2.90
318 319 7.087007 TGATTCGTCATATGTAGCTTCATCTC 58.913 38.462 9.33 0.00 0.00 2.75
319 320 6.641169 TTCGTCATATGTAGCTTCATCTCT 57.359 37.500 9.33 0.00 0.00 3.10
320 321 7.745620 TTCGTCATATGTAGCTTCATCTCTA 57.254 36.000 9.33 0.00 0.00 2.43
321 322 7.135089 TCGTCATATGTAGCTTCATCTCTAC 57.865 40.000 9.33 4.04 36.58 2.59
322 323 6.018542 CGTCATATGTAGCTTCATCTCTACG 58.981 44.000 9.33 11.32 38.33 3.51
323 324 6.347806 CGTCATATGTAGCTTCATCTCTACGT 60.348 42.308 9.33 0.00 38.33 3.57
324 325 6.799441 GTCATATGTAGCTTCATCTCTACGTG 59.201 42.308 9.33 0.31 38.33 4.49
325 326 6.486993 TCATATGTAGCTTCATCTCTACGTGT 59.513 38.462 9.33 0.00 38.33 4.49
326 327 4.357018 TGTAGCTTCATCTCTACGTGTG 57.643 45.455 0.00 0.00 38.33 3.82
327 328 2.949451 AGCTTCATCTCTACGTGTGG 57.051 50.000 0.00 0.00 0.00 4.17
328 329 2.171840 AGCTTCATCTCTACGTGTGGT 58.828 47.619 0.00 0.00 0.00 4.16
329 330 3.353557 AGCTTCATCTCTACGTGTGGTA 58.646 45.455 0.00 0.00 0.00 3.25
337 338 2.846039 CTACGTGTGGTAGTGCTAGG 57.154 55.000 0.00 0.00 43.05 3.02
338 339 1.404391 CTACGTGTGGTAGTGCTAGGG 59.596 57.143 0.00 0.00 43.05 3.53
339 340 1.255667 ACGTGTGGTAGTGCTAGGGG 61.256 60.000 0.00 0.00 0.00 4.79
340 341 1.255667 CGTGTGGTAGTGCTAGGGGT 61.256 60.000 0.00 0.00 0.00 4.95
341 342 0.249398 GTGTGGTAGTGCTAGGGGTG 59.751 60.000 0.00 0.00 0.00 4.61
342 343 0.907704 TGTGGTAGTGCTAGGGGTGG 60.908 60.000 0.00 0.00 0.00 4.61
343 344 0.908180 GTGGTAGTGCTAGGGGTGGT 60.908 60.000 0.00 0.00 0.00 4.16
344 345 0.907704 TGGTAGTGCTAGGGGTGGTG 60.908 60.000 0.00 0.00 0.00 4.17
345 346 0.908180 GGTAGTGCTAGGGGTGGTGT 60.908 60.000 0.00 0.00 0.00 4.16
346 347 0.981943 GTAGTGCTAGGGGTGGTGTT 59.018 55.000 0.00 0.00 0.00 3.32
347 348 0.981183 TAGTGCTAGGGGTGGTGTTG 59.019 55.000 0.00 0.00 0.00 3.33
348 349 1.971695 GTGCTAGGGGTGGTGTTGC 60.972 63.158 0.00 0.00 0.00 4.17
349 350 2.153401 TGCTAGGGGTGGTGTTGCT 61.153 57.895 0.00 0.00 0.00 3.91
350 351 1.675641 GCTAGGGGTGGTGTTGCTG 60.676 63.158 0.00 0.00 0.00 4.41
351 352 1.675641 CTAGGGGTGGTGTTGCTGC 60.676 63.158 0.00 0.00 0.00 5.25
352 353 3.545124 TAGGGGTGGTGTTGCTGCG 62.545 63.158 0.00 0.00 0.00 5.18
355 356 4.030452 GGTGGTGTTGCTGCGCTC 62.030 66.667 9.73 0.28 0.00 5.03
356 357 3.279116 GTGGTGTTGCTGCGCTCA 61.279 61.111 9.73 3.52 0.00 4.26
357 358 2.974148 TGGTGTTGCTGCGCTCAG 60.974 61.111 9.73 0.00 43.16 3.35
372 373 2.940147 GCTCAGCGTCTATGTATCCTG 58.060 52.381 0.00 0.00 0.00 3.86
373 374 2.924454 GCTCAGCGTCTATGTATCCTGC 60.924 54.545 0.00 0.00 0.00 4.85
374 375 2.556189 CTCAGCGTCTATGTATCCTGCT 59.444 50.000 0.00 0.00 0.00 4.24
375 376 2.959030 TCAGCGTCTATGTATCCTGCTT 59.041 45.455 0.00 0.00 0.00 3.91
376 377 3.384789 TCAGCGTCTATGTATCCTGCTTT 59.615 43.478 0.00 0.00 0.00 3.51
377 378 3.492383 CAGCGTCTATGTATCCTGCTTTG 59.508 47.826 0.00 0.00 0.00 2.77
378 379 2.802816 GCGTCTATGTATCCTGCTTTGG 59.197 50.000 0.00 0.00 0.00 3.28
379 380 3.393800 CGTCTATGTATCCTGCTTTGGG 58.606 50.000 0.00 0.00 0.00 4.12
380 381 3.181465 CGTCTATGTATCCTGCTTTGGGT 60.181 47.826 0.00 0.00 0.00 4.51
381 382 4.130118 GTCTATGTATCCTGCTTTGGGTG 58.870 47.826 0.00 0.00 0.00 4.61
382 383 3.780294 TCTATGTATCCTGCTTTGGGTGT 59.220 43.478 0.00 0.00 0.00 4.16
383 384 2.198827 TGTATCCTGCTTTGGGTGTG 57.801 50.000 0.00 0.00 0.00 3.82
384 385 1.423541 TGTATCCTGCTTTGGGTGTGT 59.576 47.619 0.00 0.00 0.00 3.72
385 386 1.812571 GTATCCTGCTTTGGGTGTGTG 59.187 52.381 0.00 0.00 0.00 3.82
386 387 1.181098 ATCCTGCTTTGGGTGTGTGC 61.181 55.000 0.00 0.00 0.00 4.57
387 388 2.332514 CTGCTTTGGGTGTGTGCG 59.667 61.111 0.00 0.00 0.00 5.34
388 389 2.439338 TGCTTTGGGTGTGTGCGT 60.439 55.556 0.00 0.00 0.00 5.24
389 390 2.026014 GCTTTGGGTGTGTGCGTG 59.974 61.111 0.00 0.00 0.00 5.34
390 391 2.770589 GCTTTGGGTGTGTGCGTGT 61.771 57.895 0.00 0.00 0.00 4.49
391 392 1.063972 CTTTGGGTGTGTGCGTGTG 59.936 57.895 0.00 0.00 0.00 3.82
392 393 1.653094 CTTTGGGTGTGTGCGTGTGT 61.653 55.000 0.00 0.00 0.00 3.72
393 394 1.244697 TTTGGGTGTGTGCGTGTGTT 61.245 50.000 0.00 0.00 0.00 3.32
394 395 1.927608 TTGGGTGTGTGCGTGTGTTG 61.928 55.000 0.00 0.00 0.00 3.33
395 396 2.277884 GGTGTGTGCGTGTGTTGC 60.278 61.111 0.00 0.00 0.00 4.17
396 397 2.647481 GTGTGTGCGTGTGTTGCG 60.647 61.111 0.00 0.00 34.24 4.85
397 398 2.815647 TGTGTGCGTGTGTTGCGA 60.816 55.556 0.00 0.00 34.24 5.10
398 399 2.176926 TGTGTGCGTGTGTTGCGAT 61.177 52.632 0.00 0.00 34.24 4.58
399 400 1.722163 GTGTGCGTGTGTTGCGATG 60.722 57.895 0.00 0.00 34.24 3.84
400 401 1.884926 TGTGCGTGTGTTGCGATGA 60.885 52.632 0.00 0.00 34.24 2.92
401 402 1.438710 GTGCGTGTGTTGCGATGAC 60.439 57.895 0.00 0.00 34.24 3.06
402 403 2.202046 GCGTGTGTTGCGATGACG 60.202 61.111 0.00 0.00 42.93 4.35
403 404 2.938823 GCGTGTGTTGCGATGACGT 61.939 57.895 0.00 0.00 41.98 4.34
404 405 1.154854 CGTGTGTTGCGATGACGTG 60.155 57.895 0.00 0.00 41.98 4.49
405 406 1.204062 GTGTGTTGCGATGACGTGG 59.796 57.895 0.00 0.00 41.98 4.94
406 407 2.173382 GTGTTGCGATGACGTGGC 59.827 61.111 0.00 0.00 41.98 5.01
407 408 3.410516 TGTTGCGATGACGTGGCG 61.411 61.111 0.00 0.00 41.98 5.69
408 409 3.411351 GTTGCGATGACGTGGCGT 61.411 61.111 0.00 0.00 45.10 5.68
409 410 3.410516 TTGCGATGACGTGGCGTG 61.411 61.111 0.00 0.00 41.37 5.34
410 411 4.656117 TGCGATGACGTGGCGTGT 62.656 61.111 0.00 0.00 41.37 4.49
411 412 4.134187 GCGATGACGTGGCGTGTG 62.134 66.667 0.00 0.00 41.37 3.82
412 413 2.733218 CGATGACGTGGCGTGTGT 60.733 61.111 0.00 0.00 41.37 3.72
413 414 2.307309 CGATGACGTGGCGTGTGTT 61.307 57.895 0.00 0.00 41.37 3.32
414 415 1.827315 CGATGACGTGGCGTGTGTTT 61.827 55.000 0.00 0.00 41.37 2.83
415 416 0.384230 GATGACGTGGCGTGTGTTTG 60.384 55.000 0.00 0.00 41.37 2.93
416 417 1.092921 ATGACGTGGCGTGTGTTTGT 61.093 50.000 0.00 0.00 41.37 2.83
417 418 0.459759 TGACGTGGCGTGTGTTTGTA 60.460 50.000 0.00 0.00 41.37 2.41
418 419 0.651551 GACGTGGCGTGTGTTTGTAA 59.348 50.000 0.00 0.00 41.37 2.41
419 420 1.262151 GACGTGGCGTGTGTTTGTAAT 59.738 47.619 0.00 0.00 41.37 1.89
420 421 1.003331 ACGTGGCGTGTGTTTGTAATG 60.003 47.619 0.00 0.00 39.18 1.90
421 422 1.661743 CGTGGCGTGTGTTTGTAATGG 60.662 52.381 0.00 0.00 0.00 3.16
422 423 0.955178 TGGCGTGTGTTTGTAATGGG 59.045 50.000 0.00 0.00 0.00 4.00
423 424 0.955905 GGCGTGTGTTTGTAATGGGT 59.044 50.000 0.00 0.00 0.00 4.51
424 425 1.335506 GGCGTGTGTTTGTAATGGGTG 60.336 52.381 0.00 0.00 0.00 4.61
425 426 1.928595 GCGTGTGTTTGTAATGGGTGC 60.929 52.381 0.00 0.00 0.00 5.01
426 427 1.606668 CGTGTGTTTGTAATGGGTGCT 59.393 47.619 0.00 0.00 0.00 4.40
427 428 2.034053 CGTGTGTTTGTAATGGGTGCTT 59.966 45.455 0.00 0.00 0.00 3.91
428 429 3.380142 GTGTGTTTGTAATGGGTGCTTG 58.620 45.455 0.00 0.00 0.00 4.01
429 430 3.027412 TGTGTTTGTAATGGGTGCTTGT 58.973 40.909 0.00 0.00 0.00 3.16
430 431 3.449018 TGTGTTTGTAATGGGTGCTTGTT 59.551 39.130 0.00 0.00 0.00 2.83
431 432 3.801594 GTGTTTGTAATGGGTGCTTGTTG 59.198 43.478 0.00 0.00 0.00 3.33
432 433 3.701542 TGTTTGTAATGGGTGCTTGTTGA 59.298 39.130 0.00 0.00 0.00 3.18
433 434 4.343526 TGTTTGTAATGGGTGCTTGTTGAT 59.656 37.500 0.00 0.00 0.00 2.57
434 435 5.163364 TGTTTGTAATGGGTGCTTGTTGATT 60.163 36.000 0.00 0.00 0.00 2.57
435 436 4.517952 TGTAATGGGTGCTTGTTGATTG 57.482 40.909 0.00 0.00 0.00 2.67
436 437 4.148079 TGTAATGGGTGCTTGTTGATTGA 58.852 39.130 0.00 0.00 0.00 2.57
437 438 4.771577 TGTAATGGGTGCTTGTTGATTGAT 59.228 37.500 0.00 0.00 0.00 2.57
438 439 3.880047 ATGGGTGCTTGTTGATTGATG 57.120 42.857 0.00 0.00 0.00 3.07
439 440 1.273048 TGGGTGCTTGTTGATTGATGC 59.727 47.619 0.00 0.00 0.00 3.91
440 441 1.547372 GGGTGCTTGTTGATTGATGCT 59.453 47.619 0.00 0.00 0.00 3.79
441 442 2.028748 GGGTGCTTGTTGATTGATGCTT 60.029 45.455 0.00 0.00 0.00 3.91
442 443 3.555586 GGGTGCTTGTTGATTGATGCTTT 60.556 43.478 0.00 0.00 0.00 3.51
443 444 4.321899 GGGTGCTTGTTGATTGATGCTTTA 60.322 41.667 0.00 0.00 0.00 1.85
444 445 5.413499 GGTGCTTGTTGATTGATGCTTTAT 58.587 37.500 0.00 0.00 0.00 1.40
445 446 6.405731 GGGTGCTTGTTGATTGATGCTTTATA 60.406 38.462 0.00 0.00 0.00 0.98
446 447 7.205297 GGTGCTTGTTGATTGATGCTTTATAT 58.795 34.615 0.00 0.00 0.00 0.86
447 448 8.352201 GGTGCTTGTTGATTGATGCTTTATATA 58.648 33.333 0.00 0.00 0.00 0.86
448 449 9.903682 GTGCTTGTTGATTGATGCTTTATATAT 57.096 29.630 0.00 0.00 0.00 0.86
462 463 6.730960 CTTTATATATAAAGCGGGGCGAAA 57.269 37.500 25.10 1.66 41.69 3.46
463 464 6.730960 TTTATATATAAAGCGGGGCGAAAG 57.269 37.500 12.90 0.00 0.00 2.62
574 582 5.944007 ACCTTGTTATAAACAACTAGCTGGG 59.056 40.000 0.85 2.98 45.79 4.45
631 861 3.059166 TCATGATTCATGCGATACACCG 58.941 45.455 19.74 0.00 41.18 4.94
731 965 8.820933 CAAGTACTTATGATTCATGTACCACAG 58.179 37.037 8.04 7.19 35.45 3.66
772 1009 2.091665 AGCATTTATGACTTCCCAGGGG 60.092 50.000 5.33 0.92 0.00 4.79
839 1090 9.491675 TCACAATATGTTTCTGCATTTTCATTT 57.508 25.926 0.00 0.00 0.00 2.32
923 1175 5.105473 GCTCCTCAGGGTATATATAAACGCA 60.105 44.000 0.00 0.00 0.00 5.24
945 1197 3.634448 ACTGCTAGGTATGCTCAGTACTG 59.366 47.826 17.17 17.17 36.37 2.74
979 1231 0.615331 CAGAGCCATACCACACCAGT 59.385 55.000 0.00 0.00 0.00 4.00
997 1249 7.388776 CACACCAGTTAATTCAGAGATCAGAAA 59.611 37.037 0.00 0.00 0.00 2.52
1041 1293 3.780804 TCAATTTGGGGTTCTCTCGAA 57.219 42.857 0.00 0.00 0.00 3.71
1257 1509 2.009774 GACCATCACAATGAAGTCCCG 58.990 52.381 0.00 0.00 34.61 5.14
1291 1543 4.327680 GGTAAGTGAAGTCCTGCATTTCT 58.672 43.478 0.00 0.00 0.00 2.52
1354 1615 3.501062 TCGCAATCGATTCTATAGACCGT 59.499 43.478 7.92 3.24 40.21 4.83
1384 1645 3.057969 TGGTAACATGTCAAGAGCTGG 57.942 47.619 0.00 0.00 46.17 4.85
1386 1647 3.264193 TGGTAACATGTCAAGAGCTGGAT 59.736 43.478 0.00 0.00 46.17 3.41
1621 1977 1.481901 TTTGCACCTGCCAATGCCAT 61.482 50.000 0.00 0.00 41.33 4.40
1813 2169 4.439305 TTCTTCCCATCTTTTTCATGCG 57.561 40.909 0.00 0.00 0.00 4.73
1896 2253 1.152368 GGCTCCCCCATCTGGATTG 59.848 63.158 0.00 0.00 37.39 2.67
1900 2257 2.694397 CTCCCCCATCTGGATTGTCTA 58.306 52.381 0.00 0.00 37.39 2.59
1998 2358 6.692486 ACTTTTCTGAATCATCTGTCGTAGT 58.308 36.000 0.00 0.00 0.00 2.73
2028 2388 3.255149 TCTGTCTCGTGGACTTTAACCTC 59.745 47.826 11.17 0.00 44.74 3.85
2141 2505 8.086851 TCTATTTTAAACCAGGTTTGTCGTAC 57.913 34.615 25.65 0.00 36.37 3.67
2277 2647 0.802494 CTACCACACAATCGGCCAAC 59.198 55.000 2.24 0.00 0.00 3.77
2282 2652 1.136085 CACACAATCGGCCAACTAACG 60.136 52.381 2.24 0.00 0.00 3.18
2283 2653 1.270412 ACACAATCGGCCAACTAACGA 60.270 47.619 2.24 0.00 41.20 3.85
2306 2676 3.430098 GCATCCGCCCAAATGATAAAACA 60.430 43.478 0.00 0.00 0.00 2.83
2367 2737 1.128692 GTTGTAGTGATGACCGCAAGC 59.871 52.381 0.00 0.00 0.00 4.01
2368 2738 0.320050 TGTAGTGATGACCGCAAGCA 59.680 50.000 0.00 0.00 0.00 3.91
2371 2741 0.321919 AGTGATGACCGCAAGCACAT 60.322 50.000 0.00 0.00 36.45 3.21
2378 2748 3.016031 TGACCGCAAGCACATGAATAAT 58.984 40.909 0.00 0.00 0.00 1.28
2385 2755 5.337773 CGCAAGCACATGAATAATCGTATTG 59.662 40.000 0.00 0.00 29.69 1.90
2394 2764 6.993786 TGAATAATCGTATTGCCTTTCACA 57.006 33.333 0.00 0.00 29.69 3.58
2422 2792 8.836268 TGTATTAACCAAGTATTTGTCGAACT 57.164 30.769 0.00 0.00 32.21 3.01
2449 2819 3.090790 AGTTAAGAAGAGTCGTCTCCCC 58.909 50.000 9.13 0.70 41.26 4.81
2454 2824 1.750206 GAAGAGTCGTCTCCCCCTTAC 59.250 57.143 6.04 0.00 41.26 2.34
2457 2827 0.614134 AGTCGTCTCCCCCTTACCAC 60.614 60.000 0.00 0.00 0.00 4.16
2478 2848 4.072131 ACAATTAGAGTTGTCACGGCATT 58.928 39.130 0.00 0.00 37.80 3.56
2500 2870 2.127270 CGCGTTCGCATGCAAACT 60.127 55.556 18.76 0.00 34.13 2.66
2526 2896 7.120051 AGAGCTTGGAATTAGTAGTCTACTCA 58.880 38.462 15.94 6.08 40.14 3.41
2547 2917 5.895928 TCATGCTATATTCTATCGAGGCAC 58.104 41.667 0.00 0.00 0.00 5.01
2548 2918 5.418840 TCATGCTATATTCTATCGAGGCACA 59.581 40.000 0.00 0.00 0.00 4.57
2557 2927 2.656560 ATCGAGGCACAGAACTGTAC 57.343 50.000 7.15 2.00 42.83 2.90
2604 2974 8.406297 AGTAAACTGAAAGCAAGAAGTAAAAGG 58.594 33.333 0.00 0.00 37.60 3.11
2610 2980 6.546034 TGAAAGCAAGAAGTAAAAGGCTAACT 59.454 34.615 0.00 0.00 0.00 2.24
2611 2981 7.717875 TGAAAGCAAGAAGTAAAAGGCTAACTA 59.282 33.333 0.00 0.00 0.00 2.24
2612 2982 8.459911 AAAGCAAGAAGTAAAAGGCTAACTAA 57.540 30.769 0.00 0.00 0.00 2.24
2613 2983 8.459911 AAGCAAGAAGTAAAAGGCTAACTAAA 57.540 30.769 0.00 0.00 0.00 1.85
2614 2984 7.872881 AGCAAGAAGTAAAAGGCTAACTAAAC 58.127 34.615 0.00 0.00 0.00 2.01
2615 2985 7.720074 AGCAAGAAGTAAAAGGCTAACTAAACT 59.280 33.333 0.00 0.00 0.00 2.66
2616 2986 8.996271 GCAAGAAGTAAAAGGCTAACTAAACTA 58.004 33.333 0.00 0.00 0.00 2.24
2674 3044 4.634012 AGGCACAATGGTTAACTAGTGA 57.366 40.909 23.57 0.00 0.00 3.41
2740 3110 0.036164 GTGCACATACCCCTCACACA 59.964 55.000 13.17 0.00 0.00 3.72
2757 3127 3.813166 CACACAACTACAAACCCACCTAG 59.187 47.826 0.00 0.00 0.00 3.02
2762 3132 3.951663 ACTACAAACCCACCTAGCATTC 58.048 45.455 0.00 0.00 0.00 2.67
2782 3152 1.211190 GTCGGTCTACGGTGGTCAC 59.789 63.158 0.00 0.00 44.45 3.67
2803 3173 4.329545 GGGCTTCCTCGTGGTGCA 62.330 66.667 19.51 0.00 36.32 4.57
2812 3182 0.040958 CTCGTGGTGCAACAAAGAGC 60.041 55.000 20.90 2.67 39.47 4.09
2838 3209 0.605083 GTCTTCGTTACTCCCCGGTT 59.395 55.000 0.00 0.00 0.00 4.44
2839 3210 0.604578 TCTTCGTTACTCCCCGGTTG 59.395 55.000 0.00 0.00 0.00 3.77
2870 3241 5.314529 AGGACAAAGGGTTAGCTTTAAGTC 58.685 41.667 0.00 4.20 0.00 3.01
2876 3247 3.393278 AGGGTTAGCTTTAAGTCACCACA 59.607 43.478 0.00 0.00 0.00 4.17
2883 3254 3.501062 GCTTTAAGTCACCACAGTAACCC 59.499 47.826 0.00 0.00 0.00 4.11
2887 3258 1.975680 AGTCACCACAGTAACCCGAAT 59.024 47.619 0.00 0.00 0.00 3.34
2892 3263 0.616371 CACAGTAACCCGAATCCCCA 59.384 55.000 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.314440 TCTGCCCACGAGCACCAC 62.314 66.667 0.00 0.00 38.00 4.16
6 7 4.007644 CTCTGCCCACGAGCACCA 62.008 66.667 0.00 0.00 38.00 4.17
31 32 4.641645 TGACCGGGCAGCACCAAG 62.642 66.667 5.41 0.00 42.05 3.61
32 33 4.947147 GTGACCGGGCAGCACCAA 62.947 66.667 12.52 0.00 42.05 3.67
44 45 2.436646 CTCACGGCCATGGTGACC 60.437 66.667 14.67 5.12 39.36 4.02
45 46 2.436646 CCTCACGGCCATGGTGAC 60.437 66.667 14.67 3.32 39.36 3.67
46 47 3.716195 CCCTCACGGCCATGGTGA 61.716 66.667 14.67 8.50 41.82 4.02
76 77 4.752879 ATCGAACGCCACACCCCG 62.753 66.667 0.00 0.00 0.00 5.73
77 78 3.124921 CATCGAACGCCACACCCC 61.125 66.667 0.00 0.00 0.00 4.95
78 79 3.124921 CCATCGAACGCCACACCC 61.125 66.667 0.00 0.00 0.00 4.61
79 80 3.799755 GCCATCGAACGCCACACC 61.800 66.667 0.00 0.00 0.00 4.16
80 81 4.147322 CGCCATCGAACGCCACAC 62.147 66.667 0.00 0.00 38.10 3.82
85 86 3.554692 CTCACCGCCATCGAACGC 61.555 66.667 0.00 0.00 38.10 4.84
86 87 2.126071 ACTCACCGCCATCGAACG 60.126 61.111 0.00 0.00 38.10 3.95
87 88 0.949105 AACACTCACCGCCATCGAAC 60.949 55.000 0.00 0.00 38.10 3.95
88 89 0.948623 CAACACTCACCGCCATCGAA 60.949 55.000 0.00 0.00 38.10 3.71
89 90 1.374125 CAACACTCACCGCCATCGA 60.374 57.895 0.00 0.00 38.10 3.59
90 91 2.390599 CCAACACTCACCGCCATCG 61.391 63.158 0.00 0.00 0.00 3.84
91 92 2.690778 GCCAACACTCACCGCCATC 61.691 63.158 0.00 0.00 0.00 3.51
92 93 2.672996 GCCAACACTCACCGCCAT 60.673 61.111 0.00 0.00 0.00 4.40
93 94 4.947147 GGCCAACACTCACCGCCA 62.947 66.667 0.00 0.00 39.50 5.69
95 96 4.980805 TCGGCCAACACTCACCGC 62.981 66.667 2.24 0.00 45.23 5.68
96 97 2.738521 CTCGGCCAACACTCACCG 60.739 66.667 2.24 0.00 46.97 4.94
97 98 2.358737 CCTCGGCCAACACTCACC 60.359 66.667 2.24 0.00 0.00 4.02
98 99 1.961277 CACCTCGGCCAACACTCAC 60.961 63.158 2.24 0.00 0.00 3.51
99 100 1.691195 TTCACCTCGGCCAACACTCA 61.691 55.000 2.24 0.00 0.00 3.41
100 101 0.534203 TTTCACCTCGGCCAACACTC 60.534 55.000 2.24 0.00 0.00 3.51
101 102 0.106918 TTTTCACCTCGGCCAACACT 60.107 50.000 2.24 0.00 0.00 3.55
102 103 0.030235 GTTTTCACCTCGGCCAACAC 59.970 55.000 2.24 0.00 0.00 3.32
103 104 1.104577 GGTTTTCACCTCGGCCAACA 61.105 55.000 2.24 0.00 40.44 3.33
104 105 1.658114 GGTTTTCACCTCGGCCAAC 59.342 57.895 2.24 0.00 40.44 3.77
105 106 4.167597 GGTTTTCACCTCGGCCAA 57.832 55.556 2.24 0.00 40.44 4.52
113 114 4.392138 CCGAAGATAGAACAGGTTTTCACC 59.608 45.833 0.00 0.00 44.67 4.02
114 115 5.120363 GTCCGAAGATAGAACAGGTTTTCAC 59.880 44.000 0.00 0.00 0.00 3.18
115 116 5.235516 GTCCGAAGATAGAACAGGTTTTCA 58.764 41.667 0.00 0.00 0.00 2.69
116 117 4.326548 CGTCCGAAGATAGAACAGGTTTTC 59.673 45.833 0.00 0.00 0.00 2.29
117 118 4.243270 CGTCCGAAGATAGAACAGGTTTT 58.757 43.478 0.00 0.00 0.00 2.43
118 119 3.368116 CCGTCCGAAGATAGAACAGGTTT 60.368 47.826 0.00 0.00 0.00 3.27
119 120 2.165845 CCGTCCGAAGATAGAACAGGTT 59.834 50.000 0.00 0.00 0.00 3.50
120 121 1.749634 CCGTCCGAAGATAGAACAGGT 59.250 52.381 0.00 0.00 0.00 4.00
121 122 2.022195 TCCGTCCGAAGATAGAACAGG 58.978 52.381 0.00 0.00 0.00 4.00
122 123 2.223525 GGTCCGTCCGAAGATAGAACAG 60.224 54.545 0.00 0.00 0.00 3.16
123 124 1.747355 GGTCCGTCCGAAGATAGAACA 59.253 52.381 0.00 0.00 0.00 3.18
124 125 2.488639 GGTCCGTCCGAAGATAGAAC 57.511 55.000 0.00 0.00 0.00 3.01
146 147 3.617538 GAACGATCTTCGCCGCCG 61.618 66.667 0.00 0.00 45.12 6.46
147 148 2.202756 AGAACGATCTTCGCCGCC 60.203 61.111 0.00 0.00 45.12 6.13
148 149 0.802607 AAGAGAACGATCTTCGCCGC 60.803 55.000 0.00 0.00 45.12 6.53
149 150 1.192793 GAAGAGAACGATCTTCGCCG 58.807 55.000 11.84 0.00 45.12 6.46
154 155 5.157781 CGACTTCAAGAAGAGAACGATCTT 58.842 41.667 16.16 0.00 42.23 2.40
155 156 4.216687 ACGACTTCAAGAAGAGAACGATCT 59.783 41.667 16.16 0.00 40.79 2.75
156 157 4.477780 ACGACTTCAAGAAGAGAACGATC 58.522 43.478 16.16 1.34 40.79 3.69
157 158 4.477780 GACGACTTCAAGAAGAGAACGAT 58.522 43.478 16.16 7.24 40.79 3.73
158 159 3.606384 CGACGACTTCAAGAAGAGAACGA 60.606 47.826 16.16 0.00 40.79 3.85
159 160 2.652642 CGACGACTTCAAGAAGAGAACG 59.347 50.000 16.16 15.53 40.79 3.95
160 161 3.630101 ACGACGACTTCAAGAAGAGAAC 58.370 45.455 16.16 8.48 40.79 3.01
161 162 3.606384 CGACGACGACTTCAAGAAGAGAA 60.606 47.826 16.16 0.00 41.42 2.87
162 163 2.096367 CGACGACGACTTCAAGAAGAGA 60.096 50.000 16.16 0.00 41.42 3.10
163 164 2.235020 CGACGACGACTTCAAGAAGAG 58.765 52.381 16.16 11.40 41.42 2.85
164 165 1.662309 GCGACGACGACTTCAAGAAGA 60.662 52.381 16.16 0.00 40.18 2.87
165 166 0.703466 GCGACGACGACTTCAAGAAG 59.297 55.000 12.29 8.22 42.66 2.85
166 167 0.995234 CGCGACGACGACTTCAAGAA 60.995 55.000 12.29 0.00 42.66 2.52
167 168 1.439858 CGCGACGACGACTTCAAGA 60.440 57.895 12.29 0.00 42.66 3.02
168 169 2.426183 CCGCGACGACGACTTCAAG 61.426 63.158 8.23 0.00 42.66 3.02
169 170 2.427905 CCGCGACGACGACTTCAA 60.428 61.111 8.23 0.00 42.66 2.69
171 172 4.755614 AGCCGCGACGACGACTTC 62.756 66.667 8.23 0.00 42.66 3.01
172 173 3.836176 AAAGCCGCGACGACGACTT 62.836 57.895 8.23 8.04 42.66 3.01
173 174 4.338539 AAAGCCGCGACGACGACT 62.339 61.111 8.23 1.67 42.66 4.18
174 175 3.824510 GAAAGCCGCGACGACGAC 61.825 66.667 8.23 1.51 42.66 4.34
175 176 3.620300 ATGAAAGCCGCGACGACGA 62.620 57.895 8.23 0.00 42.66 4.20
176 177 2.726691 AATGAAAGCCGCGACGACG 61.727 57.895 8.23 2.12 42.93 5.12
177 178 1.225745 CAATGAAAGCCGCGACGAC 60.226 57.895 8.23 0.00 0.00 4.34
178 179 3.022401 GCAATGAAAGCCGCGACGA 62.022 57.895 8.23 0.00 0.00 4.20
179 180 2.574212 GCAATGAAAGCCGCGACG 60.574 61.111 8.23 0.00 0.00 5.12
180 181 2.202479 GGCAATGAAAGCCGCGAC 60.202 61.111 8.23 0.00 43.15 5.19
186 187 0.803380 GCATGACGGGCAATGAAAGC 60.803 55.000 0.00 0.00 0.00 3.51
187 188 0.523968 CGCATGACGGGCAATGAAAG 60.524 55.000 0.00 0.00 38.44 2.62
188 189 1.505807 CGCATGACGGGCAATGAAA 59.494 52.632 0.00 0.00 38.44 2.69
189 190 3.186106 CGCATGACGGGCAATGAA 58.814 55.556 0.00 0.00 38.44 2.57
199 200 4.899239 CCTCCGGAGCCGCATGAC 62.899 72.222 26.87 0.00 38.24 3.06
201 202 3.680620 TTTCCTCCGGAGCCGCATG 62.681 63.158 26.87 11.39 38.24 4.06
202 203 3.399181 TTTCCTCCGGAGCCGCAT 61.399 61.111 26.87 0.00 38.24 4.73
203 204 4.388499 GTTTCCTCCGGAGCCGCA 62.388 66.667 26.87 6.36 38.24 5.69
204 205 4.083862 AGTTTCCTCCGGAGCCGC 62.084 66.667 26.87 14.68 38.24 6.53
205 206 2.184579 GAGTTTCCTCCGGAGCCG 59.815 66.667 26.87 13.74 39.44 5.52
206 207 1.219393 CAGAGTTTCCTCCGGAGCC 59.781 63.158 26.87 12.70 38.58 4.70
207 208 0.827368 ATCAGAGTTTCCTCCGGAGC 59.173 55.000 26.87 12.38 38.58 4.70
208 209 1.410882 GGATCAGAGTTTCCTCCGGAG 59.589 57.143 25.36 25.36 38.58 4.63
209 210 1.007238 AGGATCAGAGTTTCCTCCGGA 59.993 52.381 2.93 2.93 37.89 5.14
210 211 1.490574 AGGATCAGAGTTTCCTCCGG 58.509 55.000 0.00 0.00 37.89 5.14
211 212 2.419297 CCAAGGATCAGAGTTTCCTCCG 60.419 54.545 0.00 0.00 41.58 4.63
212 213 2.840651 TCCAAGGATCAGAGTTTCCTCC 59.159 50.000 0.00 0.00 41.58 4.30
213 214 4.769345 ATCCAAGGATCAGAGTTTCCTC 57.231 45.455 0.00 0.00 41.58 3.71
224 225 2.031163 CCGCCCGATCCAAGGATC 59.969 66.667 17.30 17.30 45.42 3.36
225 226 2.768344 ACCGCCCGATCCAAGGAT 60.768 61.111 0.16 0.16 37.59 3.24
226 227 3.781307 CACCGCCCGATCCAAGGA 61.781 66.667 0.00 0.00 0.00 3.36
227 228 4.856801 CCACCGCCCGATCCAAGG 62.857 72.222 0.00 0.00 0.00 3.61
250 251 2.663852 AAAGGAACGACACCGGCG 60.664 61.111 0.00 0.00 40.78 6.46
251 252 2.322830 GGAAAGGAACGACACCGGC 61.323 63.158 0.00 0.00 40.78 6.13
252 253 0.949105 CAGGAAAGGAACGACACCGG 60.949 60.000 0.00 0.00 40.78 5.28
253 254 0.032952 TCAGGAAAGGAACGACACCG 59.967 55.000 0.00 0.00 42.50 4.94
254 255 2.143925 CTTCAGGAAAGGAACGACACC 58.856 52.381 0.00 0.00 0.00 4.16
264 265 0.695347 AGGTGGCTCCTTCAGGAAAG 59.305 55.000 1.37 0.00 45.67 2.62
265 266 2.868504 AGGTGGCTCCTTCAGGAAA 58.131 52.632 1.37 0.00 45.67 3.13
266 267 4.668925 AGGTGGCTCCTTCAGGAA 57.331 55.556 1.37 0.00 45.67 3.36
275 276 3.984193 ATGCGCTCCAAGGTGGCTC 62.984 63.158 9.73 0.00 37.47 4.70
276 277 4.039092 ATGCGCTCCAAGGTGGCT 62.039 61.111 9.73 0.00 37.47 4.75
277 278 3.818787 CATGCGCTCCAAGGTGGC 61.819 66.667 9.73 0.00 37.47 5.01
278 279 1.033746 AATCATGCGCTCCAAGGTGG 61.034 55.000 9.73 0.00 39.43 4.61
279 280 0.379669 GAATCATGCGCTCCAAGGTG 59.620 55.000 9.73 0.00 0.00 4.00
280 281 1.091771 CGAATCATGCGCTCCAAGGT 61.092 55.000 9.73 0.00 0.00 3.50
281 282 1.091771 ACGAATCATGCGCTCCAAGG 61.092 55.000 9.73 0.00 0.00 3.61
282 283 0.302890 GACGAATCATGCGCTCCAAG 59.697 55.000 9.73 0.00 0.00 3.61
283 284 0.390998 TGACGAATCATGCGCTCCAA 60.391 50.000 9.73 0.00 0.00 3.53
284 285 0.179076 ATGACGAATCATGCGCTCCA 60.179 50.000 9.73 0.00 44.26 3.86
285 286 1.783284 TATGACGAATCATGCGCTCC 58.217 50.000 9.73 0.00 45.54 4.70
286 287 2.733552 ACATATGACGAATCATGCGCTC 59.266 45.455 10.38 0.00 45.54 5.03
287 288 2.759191 ACATATGACGAATCATGCGCT 58.241 42.857 10.38 0.00 45.54 5.92
288 289 3.482598 GCTACATATGACGAATCATGCGC 60.483 47.826 10.38 0.00 45.54 6.09
289 290 3.922850 AGCTACATATGACGAATCATGCG 59.077 43.478 10.38 0.00 45.54 4.73
290 291 5.406477 TGAAGCTACATATGACGAATCATGC 59.594 40.000 10.38 0.53 45.54 4.06
291 292 7.544915 AGATGAAGCTACATATGACGAATCATG 59.455 37.037 10.38 0.00 45.54 3.07
293 294 6.986250 AGATGAAGCTACATATGACGAATCA 58.014 36.000 10.38 8.47 39.83 2.57
294 295 7.312154 AGAGATGAAGCTACATATGACGAATC 58.688 38.462 10.38 2.99 0.00 2.52
295 296 7.225784 AGAGATGAAGCTACATATGACGAAT 57.774 36.000 10.38 0.00 0.00 3.34
296 297 6.641169 AGAGATGAAGCTACATATGACGAA 57.359 37.500 10.38 0.00 0.00 3.85
297 298 6.128526 CGTAGAGATGAAGCTACATATGACGA 60.129 42.308 10.38 0.00 37.44 4.20
298 299 6.018542 CGTAGAGATGAAGCTACATATGACG 58.981 44.000 10.38 0.00 37.44 4.35
299 300 6.799441 CACGTAGAGATGAAGCTACATATGAC 59.201 42.308 10.38 0.00 37.44 3.06
300 301 6.486993 ACACGTAGAGATGAAGCTACATATGA 59.513 38.462 10.38 0.00 37.44 2.15
301 302 6.580416 CACACGTAGAGATGAAGCTACATATG 59.420 42.308 0.00 0.00 37.44 1.78
302 303 6.294231 CCACACGTAGAGATGAAGCTACATAT 60.294 42.308 0.00 0.00 37.44 1.78
303 304 5.008712 CCACACGTAGAGATGAAGCTACATA 59.991 44.000 0.00 0.00 37.44 2.29
304 305 4.202060 CCACACGTAGAGATGAAGCTACAT 60.202 45.833 0.00 0.00 37.44 2.29
305 306 3.128764 CCACACGTAGAGATGAAGCTACA 59.871 47.826 0.00 0.00 37.44 2.74
306 307 3.128938 ACCACACGTAGAGATGAAGCTAC 59.871 47.826 0.00 0.00 34.94 3.58
307 308 3.353557 ACCACACGTAGAGATGAAGCTA 58.646 45.455 0.00 0.00 0.00 3.32
308 309 2.171840 ACCACACGTAGAGATGAAGCT 58.828 47.619 0.00 0.00 0.00 3.74
309 310 2.656560 ACCACACGTAGAGATGAAGC 57.343 50.000 0.00 0.00 0.00 3.86
310 311 4.663166 CACTACCACACGTAGAGATGAAG 58.337 47.826 4.00 0.00 46.53 3.02
311 312 3.119602 GCACTACCACACGTAGAGATGAA 60.120 47.826 4.00 0.00 46.53 2.57
312 313 2.422479 GCACTACCACACGTAGAGATGA 59.578 50.000 4.00 0.00 46.53 2.92
313 314 2.423892 AGCACTACCACACGTAGAGATG 59.576 50.000 4.00 0.00 46.53 2.90
314 315 2.724454 AGCACTACCACACGTAGAGAT 58.276 47.619 4.00 0.00 46.53 2.75
315 316 2.195741 AGCACTACCACACGTAGAGA 57.804 50.000 4.00 0.00 46.53 3.10
316 317 2.355132 CCTAGCACTACCACACGTAGAG 59.645 54.545 4.00 0.00 46.53 2.43
317 318 2.362736 CCTAGCACTACCACACGTAGA 58.637 52.381 4.00 0.00 46.53 2.59
319 320 1.466856 CCCTAGCACTACCACACGTA 58.533 55.000 0.00 0.00 0.00 3.57
320 321 1.255667 CCCCTAGCACTACCACACGT 61.256 60.000 0.00 0.00 0.00 4.49
321 322 1.255667 ACCCCTAGCACTACCACACG 61.256 60.000 0.00 0.00 0.00 4.49
322 323 0.249398 CACCCCTAGCACTACCACAC 59.751 60.000 0.00 0.00 0.00 3.82
323 324 0.907704 CCACCCCTAGCACTACCACA 60.908 60.000 0.00 0.00 0.00 4.17
324 325 0.908180 ACCACCCCTAGCACTACCAC 60.908 60.000 0.00 0.00 0.00 4.16
325 326 0.907704 CACCACCCCTAGCACTACCA 60.908 60.000 0.00 0.00 0.00 3.25
326 327 0.908180 ACACCACCCCTAGCACTACC 60.908 60.000 0.00 0.00 0.00 3.18
327 328 0.981943 AACACCACCCCTAGCACTAC 59.018 55.000 0.00 0.00 0.00 2.73
328 329 0.981183 CAACACCACCCCTAGCACTA 59.019 55.000 0.00 0.00 0.00 2.74
329 330 1.761174 CAACACCACCCCTAGCACT 59.239 57.895 0.00 0.00 0.00 4.40
330 331 1.971695 GCAACACCACCCCTAGCAC 60.972 63.158 0.00 0.00 0.00 4.40
331 332 2.153401 AGCAACACCACCCCTAGCA 61.153 57.895 0.00 0.00 0.00 3.49
332 333 1.675641 CAGCAACACCACCCCTAGC 60.676 63.158 0.00 0.00 0.00 3.42
333 334 1.675641 GCAGCAACACCACCCCTAG 60.676 63.158 0.00 0.00 0.00 3.02
334 335 2.434331 GCAGCAACACCACCCCTA 59.566 61.111 0.00 0.00 0.00 3.53
335 336 4.954970 CGCAGCAACACCACCCCT 62.955 66.667 0.00 0.00 0.00 4.79
352 353 2.924454 GCAGGATACATAGACGCTGAGC 60.924 54.545 0.00 0.00 41.41 4.26
353 354 2.556189 AGCAGGATACATAGACGCTGAG 59.444 50.000 0.00 0.00 41.41 3.35
354 355 2.587522 AGCAGGATACATAGACGCTGA 58.412 47.619 0.00 0.00 41.41 4.26
355 356 3.377346 AAGCAGGATACATAGACGCTG 57.623 47.619 0.00 0.00 41.41 5.18
356 357 3.493350 CCAAAGCAGGATACATAGACGCT 60.493 47.826 0.00 0.00 41.41 5.07
357 358 2.802816 CCAAAGCAGGATACATAGACGC 59.197 50.000 0.00 0.00 41.41 5.19
358 359 3.181465 ACCCAAAGCAGGATACATAGACG 60.181 47.826 0.00 0.00 41.41 4.18
359 360 4.130118 CACCCAAAGCAGGATACATAGAC 58.870 47.826 0.00 0.00 41.41 2.59
360 361 3.780294 ACACCCAAAGCAGGATACATAGA 59.220 43.478 0.00 0.00 41.41 1.98
361 362 3.879295 CACACCCAAAGCAGGATACATAG 59.121 47.826 0.00 0.00 41.41 2.23
362 363 3.265737 ACACACCCAAAGCAGGATACATA 59.734 43.478 0.00 0.00 41.41 2.29
363 364 2.041620 ACACACCCAAAGCAGGATACAT 59.958 45.455 0.00 0.00 41.41 2.29
364 365 1.423541 ACACACCCAAAGCAGGATACA 59.576 47.619 0.00 0.00 41.41 2.29
365 366 1.812571 CACACACCCAAAGCAGGATAC 59.187 52.381 0.00 0.00 0.00 2.24
366 367 1.886222 GCACACACCCAAAGCAGGATA 60.886 52.381 0.00 0.00 0.00 2.59
367 368 1.181098 GCACACACCCAAAGCAGGAT 61.181 55.000 0.00 0.00 0.00 3.24
368 369 1.827789 GCACACACCCAAAGCAGGA 60.828 57.895 0.00 0.00 0.00 3.86
369 370 2.730094 GCACACACCCAAAGCAGG 59.270 61.111 0.00 0.00 0.00 4.85
370 371 2.332514 CGCACACACCCAAAGCAG 59.667 61.111 0.00 0.00 0.00 4.24
371 372 2.439338 ACGCACACACCCAAAGCA 60.439 55.556 0.00 0.00 0.00 3.91
372 373 2.026014 CACGCACACACCCAAAGC 59.974 61.111 0.00 0.00 0.00 3.51
373 374 1.063972 CACACGCACACACCCAAAG 59.936 57.895 0.00 0.00 0.00 2.77
374 375 1.244697 AACACACGCACACACCCAAA 61.245 50.000 0.00 0.00 0.00 3.28
375 376 1.675972 AACACACGCACACACCCAA 60.676 52.632 0.00 0.00 0.00 4.12
376 377 2.045829 AACACACGCACACACCCA 60.046 55.556 0.00 0.00 0.00 4.51
377 378 2.407210 CAACACACGCACACACCC 59.593 61.111 0.00 0.00 0.00 4.61
378 379 2.277884 GCAACACACGCACACACC 60.278 61.111 0.00 0.00 0.00 4.16
379 380 2.373524 ATCGCAACACACGCACACAC 62.374 55.000 0.00 0.00 0.00 3.82
380 381 2.176926 ATCGCAACACACGCACACA 61.177 52.632 0.00 0.00 0.00 3.72
381 382 1.722163 CATCGCAACACACGCACAC 60.722 57.895 0.00 0.00 0.00 3.82
382 383 1.884926 TCATCGCAACACACGCACA 60.885 52.632 0.00 0.00 0.00 4.57
383 384 1.438710 GTCATCGCAACACACGCAC 60.439 57.895 0.00 0.00 0.00 5.34
384 385 2.935191 GTCATCGCAACACACGCA 59.065 55.556 0.00 0.00 0.00 5.24
385 386 2.202046 CGTCATCGCAACACACGC 60.202 61.111 0.00 0.00 0.00 5.34
386 387 1.154854 CACGTCATCGCAACACACG 60.155 57.895 0.00 0.00 41.18 4.49
387 388 1.204062 CCACGTCATCGCAACACAC 59.796 57.895 0.00 0.00 41.18 3.82
388 389 2.603247 GCCACGTCATCGCAACACA 61.603 57.895 0.00 0.00 41.18 3.72
389 390 2.173382 GCCACGTCATCGCAACAC 59.827 61.111 0.00 0.00 41.18 3.32
390 391 3.410516 CGCCACGTCATCGCAACA 61.411 61.111 0.00 0.00 41.18 3.33
391 392 3.411351 ACGCCACGTCATCGCAAC 61.411 61.111 0.00 0.00 41.18 4.17
392 393 3.410516 CACGCCACGTCATCGCAA 61.411 61.111 0.00 0.00 38.32 4.85
393 394 4.656117 ACACGCCACGTCATCGCA 62.656 61.111 0.00 0.00 38.32 5.10
394 395 4.134187 CACACGCCACGTCATCGC 62.134 66.667 0.00 0.00 38.32 4.58
395 396 1.827315 AAACACACGCCACGTCATCG 61.827 55.000 0.00 0.00 38.32 3.84
396 397 0.384230 CAAACACACGCCACGTCATC 60.384 55.000 0.00 0.00 38.32 2.92
397 398 1.092921 ACAAACACACGCCACGTCAT 61.093 50.000 0.00 0.00 38.32 3.06
398 399 0.459759 TACAAACACACGCCACGTCA 60.460 50.000 0.00 0.00 38.32 4.35
399 400 0.651551 TTACAAACACACGCCACGTC 59.348 50.000 0.00 0.00 38.32 4.34
400 401 1.003331 CATTACAAACACACGCCACGT 60.003 47.619 0.00 0.00 42.36 4.49
401 402 1.661743 CCATTACAAACACACGCCACG 60.662 52.381 0.00 0.00 0.00 4.94
402 403 1.335506 CCCATTACAAACACACGCCAC 60.336 52.381 0.00 0.00 0.00 5.01
403 404 0.955178 CCCATTACAAACACACGCCA 59.045 50.000 0.00 0.00 0.00 5.69
404 405 0.955905 ACCCATTACAAACACACGCC 59.044 50.000 0.00 0.00 0.00 5.68
405 406 1.928595 GCACCCATTACAAACACACGC 60.929 52.381 0.00 0.00 0.00 5.34
406 407 1.606668 AGCACCCATTACAAACACACG 59.393 47.619 0.00 0.00 0.00 4.49
407 408 3.181480 ACAAGCACCCATTACAAACACAC 60.181 43.478 0.00 0.00 0.00 3.82
408 409 3.027412 ACAAGCACCCATTACAAACACA 58.973 40.909 0.00 0.00 0.00 3.72
409 410 3.726291 ACAAGCACCCATTACAAACAC 57.274 42.857 0.00 0.00 0.00 3.32
410 411 3.701542 TCAACAAGCACCCATTACAAACA 59.298 39.130 0.00 0.00 0.00 2.83
411 412 4.314740 TCAACAAGCACCCATTACAAAC 57.685 40.909 0.00 0.00 0.00 2.93
412 413 5.069648 TCAATCAACAAGCACCCATTACAAA 59.930 36.000 0.00 0.00 0.00 2.83
413 414 4.586421 TCAATCAACAAGCACCCATTACAA 59.414 37.500 0.00 0.00 0.00 2.41
414 415 4.148079 TCAATCAACAAGCACCCATTACA 58.852 39.130 0.00 0.00 0.00 2.41
415 416 4.782019 TCAATCAACAAGCACCCATTAC 57.218 40.909 0.00 0.00 0.00 1.89
416 417 4.381825 GCATCAATCAACAAGCACCCATTA 60.382 41.667 0.00 0.00 0.00 1.90
417 418 3.618019 GCATCAATCAACAAGCACCCATT 60.618 43.478 0.00 0.00 0.00 3.16
418 419 2.093869 GCATCAATCAACAAGCACCCAT 60.094 45.455 0.00 0.00 0.00 4.00
419 420 1.273048 GCATCAATCAACAAGCACCCA 59.727 47.619 0.00 0.00 0.00 4.51
420 421 1.547372 AGCATCAATCAACAAGCACCC 59.453 47.619 0.00 0.00 0.00 4.61
421 422 3.308438 AAGCATCAATCAACAAGCACC 57.692 42.857 0.00 0.00 0.00 5.01
422 423 9.903682 ATATATAAAGCATCAATCAACAAGCAC 57.096 29.630 0.00 0.00 0.00 4.40
440 441 5.122711 GCTTTCGCCCCGCTTTATATATAAA 59.877 40.000 15.47 15.47 0.00 1.40
441 442 4.632688 GCTTTCGCCCCGCTTTATATATAA 59.367 41.667 0.81 0.81 0.00 0.98
442 443 4.186159 GCTTTCGCCCCGCTTTATATATA 58.814 43.478 0.00 0.00 0.00 0.86
443 444 3.007635 GCTTTCGCCCCGCTTTATATAT 58.992 45.455 0.00 0.00 0.00 0.86
444 445 2.419667 GCTTTCGCCCCGCTTTATATA 58.580 47.619 0.00 0.00 0.00 0.86
445 446 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
446 447 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
447 448 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
457 458 2.295070 TCTTACCCAAAAAGGCTTTCGC 59.705 45.455 13.76 0.00 35.39 4.70
458 459 4.037565 ACTTCTTACCCAAAAAGGCTTTCG 59.962 41.667 13.76 7.62 35.39 3.46
459 460 5.068591 TGACTTCTTACCCAAAAAGGCTTTC 59.931 40.000 13.76 0.00 35.39 2.62
460 461 4.959839 TGACTTCTTACCCAAAAAGGCTTT 59.040 37.500 6.68 6.68 35.39 3.51
461 462 4.542697 TGACTTCTTACCCAAAAAGGCTT 58.457 39.130 0.00 0.00 35.39 4.35
462 463 4.145052 CTGACTTCTTACCCAAAAAGGCT 58.855 43.478 0.00 0.00 35.39 4.58
463 464 3.889538 ACTGACTTCTTACCCAAAAAGGC 59.110 43.478 0.00 0.00 35.39 4.35
464 465 5.277828 CGAACTGACTTCTTACCCAAAAAGG 60.278 44.000 0.00 0.00 37.03 3.11
465 466 5.296035 ACGAACTGACTTCTTACCCAAAAAG 59.704 40.000 0.00 0.00 0.00 2.27
466 467 5.187687 ACGAACTGACTTCTTACCCAAAAA 58.812 37.500 0.00 0.00 0.00 1.94
467 468 4.773013 ACGAACTGACTTCTTACCCAAAA 58.227 39.130 0.00 0.00 0.00 2.44
468 469 4.411256 ACGAACTGACTTCTTACCCAAA 57.589 40.909 0.00 0.00 0.00 3.28
469 470 5.479375 AGATACGAACTGACTTCTTACCCAA 59.521 40.000 0.00 0.00 0.00 4.12
470 471 5.014858 AGATACGAACTGACTTCTTACCCA 58.985 41.667 0.00 0.00 0.00 4.51
631 861 2.349886 CAGCGCAGACTAATGGAACTTC 59.650 50.000 11.47 0.00 0.00 3.01
731 965 6.258230 TGCTATGGTGCAGAATATATTTGC 57.742 37.500 18.13 18.13 38.12 3.68
772 1009 0.960861 GTGTTGGGAAGTGCTAGCCC 60.961 60.000 13.29 5.67 42.38 5.19
778 1015 0.736053 TTCAACGTGTTGGGAAGTGC 59.264 50.000 12.43 0.00 40.78 4.40
858 1109 5.418524 TGACATTACATGGATTTGACTTGGG 59.581 40.000 0.00 0.00 33.60 4.12
923 1175 3.634448 CAGTACTGAGCATACCTAGCAGT 59.366 47.826 18.45 0.00 42.04 4.40
945 1197 2.637947 GCTCTGAGGAATCCTTTGGTC 58.362 52.381 2.09 0.00 31.76 4.02
997 1249 0.819582 CATTCTGCCGCCTCCATTTT 59.180 50.000 0.00 0.00 0.00 1.82
1041 1293 0.534412 CCGACTCCTCACAGATTGCT 59.466 55.000 0.00 0.00 0.00 3.91
1257 1509 0.173708 CACTTACCGAGAGAGCCACC 59.826 60.000 0.00 0.00 0.00 4.61
1333 1589 3.822996 ACGGTCTATAGAATCGATTGCG 58.177 45.455 24.50 3.47 39.35 4.85
1354 1615 6.269077 TCTTGACATGTTACCACTCTTCCTTA 59.731 38.462 0.00 0.00 0.00 2.69
1372 1633 1.980765 AGTCCAATCCAGCTCTTGACA 59.019 47.619 2.52 0.00 0.00 3.58
1384 1645 5.634896 CATAGTTGCTTTGTGAGTCCAATC 58.365 41.667 0.00 0.00 0.00 2.67
1386 1647 3.253188 GCATAGTTGCTTTGTGAGTCCAA 59.747 43.478 0.00 0.00 45.77 3.53
1489 1845 5.010012 GCCTTCTTCTCTGTTCCAAAATTGA 59.990 40.000 0.00 0.00 0.00 2.57
1621 1977 5.635280 TGAAAAAGCAAACGATCAACACAAA 59.365 32.000 0.00 0.00 0.00 2.83
1682 2038 4.906423 GCAGATGCAGAAACTTGACATAG 58.094 43.478 0.00 0.00 41.59 2.23
1736 2092 6.040278 TGAAACATTTGTTCATCTGTTGGCTA 59.960 34.615 0.00 0.00 37.25 3.93
1791 2147 4.678840 GCGCATGAAAAAGATGGGAAGAAT 60.679 41.667 0.30 0.00 36.18 2.40
1896 2253 4.262249 GGGGTAGTCATTCATGAGCTAGAC 60.262 50.000 0.00 3.40 37.51 2.59
1900 2257 2.481441 TGGGGTAGTCATTCATGAGCT 58.519 47.619 0.00 0.00 37.51 4.09
1998 2358 4.371855 GTCCACGAGACAGATGACAATA 57.628 45.455 5.64 0.00 45.55 1.90
2258 2628 0.802494 GTTGGCCGATTGTGTGGTAG 59.198 55.000 0.00 0.00 0.00 3.18
2282 2652 1.896220 TATCATTTGGGCGGATGCTC 58.104 50.000 0.00 0.00 44.05 4.26
2283 2653 2.363306 TTATCATTTGGGCGGATGCT 57.637 45.000 0.00 0.00 42.25 3.79
2367 2737 7.376866 GTGAAAGGCAATACGATTATTCATGTG 59.623 37.037 0.00 0.00 0.00 3.21
2368 2738 7.066887 TGTGAAAGGCAATACGATTATTCATGT 59.933 33.333 0.00 0.00 0.00 3.21
2371 2741 6.821160 TCTGTGAAAGGCAATACGATTATTCA 59.179 34.615 0.00 0.00 0.00 2.57
2378 2748 3.937814 ACATCTGTGAAAGGCAATACGA 58.062 40.909 0.00 0.00 0.00 3.43
2385 2755 6.151144 ACTTGGTTAATACATCTGTGAAAGGC 59.849 38.462 0.00 0.00 0.00 4.35
2394 2764 9.661563 TTCGACAAATACTTGGTTAATACATCT 57.338 29.630 0.00 0.00 36.82 2.90
2415 2785 5.770417 TCTTCTTAACTCCTCAAGTTCGAC 58.230 41.667 0.00 0.00 45.28 4.20
2422 2792 5.071370 AGACGACTCTTCTTAACTCCTCAA 58.929 41.667 0.00 0.00 0.00 3.02
2449 2819 5.120208 CGTGACAACTCTAATTGTGGTAAGG 59.880 44.000 0.00 0.00 42.89 2.69
2454 2824 2.159627 GCCGTGACAACTCTAATTGTGG 59.840 50.000 0.00 0.00 42.89 4.17
2457 2827 4.685169 AATGCCGTGACAACTCTAATTG 57.315 40.909 0.00 0.00 35.59 2.32
2478 2848 1.285668 TTGCATGCGAACGCGACTAA 61.286 50.000 15.93 4.99 45.51 2.24
2500 2870 8.272889 TGAGTAGACTACTAATTCCAAGCTCTA 58.727 37.037 15.18 0.00 39.59 2.43
2583 2953 4.889995 AGCCTTTTACTTCTTGCTTTCAGT 59.110 37.500 0.00 0.00 0.00 3.41
2674 3044 2.909662 GGCTTGGCCCTCTTATCTATCT 59.090 50.000 0.00 0.00 44.06 1.98
2721 3091 0.036164 TGTGTGAGGGGTATGTGCAC 59.964 55.000 10.75 10.75 0.00 4.57
2740 3110 4.332828 GAATGCTAGGTGGGTTTGTAGTT 58.667 43.478 0.00 0.00 0.00 2.24
2757 3127 3.993103 CGTAGACCGACGGAATGC 58.007 61.111 23.38 10.81 39.19 3.56
2782 3152 0.108138 CACCACGAGGAAGCCCTTAG 60.108 60.000 5.68 0.00 44.53 2.18
2803 3173 0.693049 AGACCCATCCGCTCTTTGTT 59.307 50.000 0.00 0.00 0.00 2.83
2812 3182 1.202382 GGAGTAACGAAGACCCATCCG 60.202 57.143 0.00 0.00 0.00 4.18
2838 3209 5.163301 GCTAACCCTTTGTCCTAGATCATCA 60.163 44.000 0.00 0.00 0.00 3.07
2839 3210 5.071115 AGCTAACCCTTTGTCCTAGATCATC 59.929 44.000 0.00 0.00 0.00 2.92
2870 3241 1.677820 GGGATTCGGGTTACTGTGGTG 60.678 57.143 0.00 0.00 0.00 4.17
2876 3247 0.548197 TGGTGGGGATTCGGGTTACT 60.548 55.000 0.00 0.00 0.00 2.24
2883 3254 1.762957 AGTAGATGTGGTGGGGATTCG 59.237 52.381 0.00 0.00 0.00 3.34
2887 3258 1.078823 AGTGAGTAGATGTGGTGGGGA 59.921 52.381 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.