Multiple sequence alignment - TraesCS1D01G347200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G347200 chr1D 100.000 2872 0 0 1 2872 434320492 434323363 0.000000e+00 5304.0
1 TraesCS1D01G347200 chr1D 100.000 518 0 0 3042 3559 434323533 434324050 0.000000e+00 957.0
2 TraesCS1D01G347200 chr1D 87.354 854 69 15 1024 1850 434281797 434282638 0.000000e+00 942.0
3 TraesCS1D01G347200 chr1D 79.476 955 155 34 929 1857 434366945 434367884 1.080000e-179 640.0
4 TraesCS1D01G347200 chr1D 83.424 549 74 14 1913 2448 434282809 434283353 8.880000e-136 494.0
5 TraesCS1D01G347200 chr1D 82.487 394 43 15 153 526 434366576 434366963 4.430000e-84 322.0
6 TraesCS1D01G347200 chr1D 96.273 161 2 4 2714 2872 144666097 144666255 9.800000e-66 261.0
7 TraesCS1D01G347200 chr1D 98.639 147 1 1 2726 2872 420852211 420852066 3.520000e-65 259.0
8 TraesCS1D01G347200 chr1D 74.727 550 117 17 1274 1809 434613983 434613442 3.570000e-55 226.0
9 TraesCS1D01G347200 chr1D 75.728 412 83 14 1274 1675 434734089 434733685 1.300000e-44 191.0
10 TraesCS1D01G347200 chr1B 90.037 2138 126 35 1 2105 588001750 588003833 0.000000e+00 2687.0
11 TraesCS1D01G347200 chr1B 82.609 552 80 13 1913 2451 587990160 587990708 1.160000e-129 473.0
12 TraesCS1D01G347200 chr1B 85.794 359 44 6 555 911 604161890 604162243 1.210000e-99 374.0
13 TraesCS1D01G347200 chr1B 81.472 394 44 18 154 525 588150297 588150683 2.690000e-76 296.0
14 TraesCS1D01G347200 chr1B 90.654 214 18 2 929 1140 588150667 588150880 2.090000e-72 283.0
15 TraesCS1D01G347200 chr2D 99.228 518 4 0 3042 3559 638126842 638126325 0.000000e+00 935.0
16 TraesCS1D01G347200 chr2D 99.035 518 5 0 3042 3559 28935781 28935264 0.000000e+00 929.0
17 TraesCS1D01G347200 chr2D 98.649 148 0 1 2725 2872 575791259 575791114 9.800000e-66 261.0
18 TraesCS1D01G347200 chr5D 99.035 518 5 0 3042 3559 557423102 557422585 0.000000e+00 929.0
19 TraesCS1D01G347200 chr5D 98.842 518 6 0 3042 3559 563456852 563457369 0.000000e+00 924.0
20 TraesCS1D01G347200 chr5D 99.310 145 0 1 2726 2869 561931013 561931157 9.800000e-66 261.0
21 TraesCS1D01G347200 chr5D 89.831 59 5 1 2660 2717 556926364 556926422 1.370000e-09 75.0
22 TraesCS1D01G347200 chr5D 89.831 59 2 3 2660 2714 529762123 529762065 4.930000e-09 73.1
23 TraesCS1D01G347200 chr7D 98.842 518 6 0 3042 3559 15686242 15686759 0.000000e+00 924.0
24 TraesCS1D01G347200 chr7D 98.842 518 6 0 3042 3559 104345431 104344914 0.000000e+00 924.0
25 TraesCS1D01G347200 chr7D 84.817 382 53 5 556 934 269706929 269707308 2.590000e-101 379.0
26 TraesCS1D01G347200 chr7D 84.987 373 51 5 559 930 7205832 7206200 1.210000e-99 374.0
27 TraesCS1D01G347200 chr7D 84.350 377 55 4 558 931 11414363 11413988 2.020000e-97 366.0
28 TraesCS1D01G347200 chr7D 99.310 145 1 0 2728 2872 6959701 6959557 2.720000e-66 263.0
29 TraesCS1D01G347200 chr7D 98.000 150 2 1 2724 2872 116343212 116343361 3.520000e-65 259.0
30 TraesCS1D01G347200 chr7D 96.129 155 4 2 2718 2872 562053514 562053666 5.900000e-63 252.0
31 TraesCS1D01G347200 chr7D 89.474 57 4 2 2660 2714 37233541 37233485 1.770000e-08 71.3
32 TraesCS1D01G347200 chr6D 98.842 518 6 0 3042 3559 417872604 417873121 0.000000e+00 924.0
33 TraesCS1D01G347200 chr6D 97.987 149 2 1 2724 2872 27188684 27188831 1.270000e-64 257.0
34 TraesCS1D01G347200 chr3D 98.842 518 6 0 3042 3559 464180078 464179561 0.000000e+00 924.0
35 TraesCS1D01G347200 chr3D 98.842 518 6 0 3042 3559 614113887 614113370 0.000000e+00 924.0
36 TraesCS1D01G347200 chr1A 88.835 618 58 6 1237 1850 532458002 532458612 0.000000e+00 749.0
37 TraesCS1D01G347200 chr1A 81.757 296 42 9 1935 2219 532458733 532459027 1.650000e-58 237.0
38 TraesCS1D01G347200 chr1A 84.332 217 23 7 929 1140 532482910 532483120 6.020000e-48 202.0
39 TraesCS1D01G347200 chr6B 85.637 369 48 5 563 928 523207822 523208188 2.000000e-102 383.0
40 TraesCS1D01G347200 chr4A 85.833 360 47 4 554 911 1133680 1134037 2.590000e-101 379.0
41 TraesCS1D01G347200 chr4A 88.710 62 1 4 2657 2714 113601736 113601677 1.770000e-08 71.3
42 TraesCS1D01G347200 chr5B 84.960 379 50 7 557 931 222129154 222128779 9.330000e-101 377.0
43 TraesCS1D01G347200 chr6A 84.718 373 52 4 563 930 116703994 116704366 5.610000e-98 368.0
44 TraesCS1D01G347200 chr4D 84.211 380 56 4 557 933 399730905 399730527 2.020000e-97 366.0
45 TraesCS1D01G347200 chr4D 99.315 146 1 0 2727 2872 1160088 1160233 7.580000e-67 265.0
46 TraesCS1D01G347200 chr7A 91.071 56 4 1 2660 2714 690067363 690067418 1.370000e-09 75.0
47 TraesCS1D01G347200 chr7A 89.655 58 2 3 2660 2714 26127540 26127596 1.770000e-08 71.3
48 TraesCS1D01G347200 chr7B 89.831 59 2 3 2660 2714 609013750 609013692 4.930000e-09 73.1
49 TraesCS1D01G347200 chr2B 89.655 58 3 2 2660 2714 306906397 306906454 1.770000e-08 71.3
50 TraesCS1D01G347200 chr2B 88.136 59 5 1 2661 2717 446046923 446046981 6.380000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G347200 chr1D 434320492 434324050 3558 False 3130.5 5304 100.0000 1 3559 2 chr1D.!!$F3 3558
1 TraesCS1D01G347200 chr1D 434281797 434283353 1556 False 718.0 942 85.3890 1024 2448 2 chr1D.!!$F2 1424
2 TraesCS1D01G347200 chr1D 434366576 434367884 1308 False 481.0 640 80.9815 153 1857 2 chr1D.!!$F4 1704
3 TraesCS1D01G347200 chr1D 434613442 434613983 541 True 226.0 226 74.7270 1274 1809 1 chr1D.!!$R2 535
4 TraesCS1D01G347200 chr1B 588001750 588003833 2083 False 2687.0 2687 90.0370 1 2105 1 chr1B.!!$F2 2104
5 TraesCS1D01G347200 chr1B 587990160 587990708 548 False 473.0 473 82.6090 1913 2451 1 chr1B.!!$F1 538
6 TraesCS1D01G347200 chr1B 588150297 588150880 583 False 289.5 296 86.0630 154 1140 2 chr1B.!!$F4 986
7 TraesCS1D01G347200 chr2D 638126325 638126842 517 True 935.0 935 99.2280 3042 3559 1 chr2D.!!$R3 517
8 TraesCS1D01G347200 chr2D 28935264 28935781 517 True 929.0 929 99.0350 3042 3559 1 chr2D.!!$R1 517
9 TraesCS1D01G347200 chr5D 557422585 557423102 517 True 929.0 929 99.0350 3042 3559 1 chr5D.!!$R2 517
10 TraesCS1D01G347200 chr5D 563456852 563457369 517 False 924.0 924 98.8420 3042 3559 1 chr5D.!!$F3 517
11 TraesCS1D01G347200 chr7D 15686242 15686759 517 False 924.0 924 98.8420 3042 3559 1 chr7D.!!$F2 517
12 TraesCS1D01G347200 chr7D 104344914 104345431 517 True 924.0 924 98.8420 3042 3559 1 chr7D.!!$R4 517
13 TraesCS1D01G347200 chr6D 417872604 417873121 517 False 924.0 924 98.8420 3042 3559 1 chr6D.!!$F2 517
14 TraesCS1D01G347200 chr3D 464179561 464180078 517 True 924.0 924 98.8420 3042 3559 1 chr3D.!!$R1 517
15 TraesCS1D01G347200 chr3D 614113370 614113887 517 True 924.0 924 98.8420 3042 3559 1 chr3D.!!$R2 517
16 TraesCS1D01G347200 chr1A 532458002 532459027 1025 False 493.0 749 85.2960 1237 2219 2 chr1A.!!$F2 982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 587 0.179020 CCTCGCAGGGATGGCATTTA 60.179 55.0 0.0 0.0 0.00 1.40 F
1139 1185 0.035152 CCAGCCTGACAGCAATGGTA 60.035 55.0 0.0 0.0 34.23 3.25 F
2239 2505 0.248012 TCAACGGCGTGTCATGGTAT 59.752 50.0 15.7 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 1636 0.036164 TGCCGTACATGAACTTGGCT 59.964 50.000 0.0 0.0 42.87 4.75 R
2479 2745 0.037419 GCAATGAAAATGGGCGGTGT 60.037 50.000 0.0 0.0 0.00 4.16 R
3498 3764 2.462723 GAGGAGGCTTAGTCCAGAAGT 58.537 52.381 0.0 0.0 36.43 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 32 6.063404 ACCAAAAGACAAAAGTATTACCGGA 58.937 36.000 9.46 0.00 0.00 5.14
48 51 5.046159 ACCGGAAAACTTACAGATACCATCA 60.046 40.000 9.46 0.00 0.00 3.07
50 53 5.872617 CGGAAAACTTACAGATACCATCACA 59.127 40.000 0.00 0.00 0.00 3.58
77 80 3.096092 TGAGGGCTCACTTTGTGTTTTT 58.904 40.909 0.00 0.00 34.14 1.94
103 106 1.747355 CGGTAGTGTAATGTCGTCCCT 59.253 52.381 0.00 0.00 0.00 4.20
150 153 7.224949 GTGTATATAGAGAAGAACAAAGTGCCC 59.775 40.741 0.00 0.00 0.00 5.36
169 172 4.491409 GAAGAAGAGGGGGCCGCC 62.491 72.222 31.08 31.08 0.00 6.13
243 258 1.412710 TCGAAGGCAGTGTCAACTCTT 59.587 47.619 0.00 0.00 32.98 2.85
261 276 0.609957 TTCAGCCCATGTCTTGCCTG 60.610 55.000 0.00 0.00 0.00 4.85
308 323 3.306225 CCCATGTCAACCCACATTCTTTG 60.306 47.826 0.00 0.00 34.60 2.77
376 412 4.033702 CCGGACGTTATCTAAAAGAAAGGC 59.966 45.833 0.00 0.00 0.00 4.35
407 443 2.551071 GGGTCCTGCTGGATATGTTAGC 60.551 54.545 16.12 0.85 45.29 3.09
418 456 4.225042 TGGATATGTTAGCCTGTCTGTGTT 59.775 41.667 0.00 0.00 34.68 3.32
487 525 6.019479 CGGACATATCTGACTTTCTTGCTTAC 60.019 42.308 0.00 0.00 32.26 2.34
515 555 3.891366 AGATTAAGCCTGCACAAGTTGTT 59.109 39.130 5.57 0.00 0.00 2.83
542 582 1.686325 TTAGTCCTCGCAGGGATGGC 61.686 60.000 0.00 0.00 37.73 4.40
543 583 2.871795 TAGTCCTCGCAGGGATGGCA 62.872 60.000 0.00 0.00 37.73 4.92
544 584 2.769621 TCCTCGCAGGGATGGCAT 60.770 61.111 0.00 0.00 35.59 4.40
545 585 2.194056 CCTCGCAGGGATGGCATT 59.806 61.111 0.00 0.00 0.00 3.56
546 586 1.454479 CCTCGCAGGGATGGCATTT 60.454 57.895 0.00 0.00 0.00 2.32
547 587 0.179020 CCTCGCAGGGATGGCATTTA 60.179 55.000 0.00 0.00 0.00 1.40
548 588 0.947244 CTCGCAGGGATGGCATTTAC 59.053 55.000 0.00 0.00 0.00 2.01
549 589 0.254462 TCGCAGGGATGGCATTTACA 59.746 50.000 0.00 0.00 0.00 2.41
550 590 0.381801 CGCAGGGATGGCATTTACAC 59.618 55.000 0.00 0.00 0.00 2.90
551 591 0.381801 GCAGGGATGGCATTTACACG 59.618 55.000 0.00 0.00 0.00 4.49
552 592 1.024271 CAGGGATGGCATTTACACGG 58.976 55.000 0.00 0.00 0.00 4.94
553 593 0.751643 AGGGATGGCATTTACACGGC 60.752 55.000 0.00 0.00 0.00 5.68
556 596 2.294074 GGATGGCATTTACACGGCTTA 58.706 47.619 0.00 0.00 0.00 3.09
561 601 2.352388 GCATTTACACGGCTTAGGACA 58.648 47.619 0.00 0.00 0.00 4.02
563 603 3.857052 CATTTACACGGCTTAGGACAGA 58.143 45.455 0.00 0.00 0.00 3.41
574 614 4.562552 GGCTTAGGACAGATTAGATGGAGC 60.563 50.000 0.00 0.00 0.00 4.70
578 618 2.029470 GGACAGATTAGATGGAGCTCCG 60.029 54.545 27.43 12.23 39.43 4.63
593 633 2.280186 CCGGCGTAGATTCCTGCC 60.280 66.667 6.01 2.23 44.09 4.85
630 671 0.886563 AGGTTAGGGTTCTCGTCGTG 59.113 55.000 0.00 0.00 0.00 4.35
631 672 0.600057 GGTTAGGGTTCTCGTCGTGT 59.400 55.000 0.00 0.00 0.00 4.49
656 697 3.003897 ACGCAACAACGATATTTGGTGTT 59.996 39.130 6.96 6.74 44.68 3.32
658 699 4.786068 CGCAACAACGATATTTGGTGTTAG 59.214 41.667 10.80 7.83 44.68 2.34
662 703 7.540745 GCAACAACGATATTTGGTGTTAGATTT 59.459 33.333 10.80 0.00 44.68 2.17
679 720 8.177663 TGTTAGATTTTTCAGATCGATTCAAGC 58.822 33.333 0.00 0.00 0.00 4.01
686 727 6.688637 TTCAGATCGATTCAAGCATTCAAT 57.311 33.333 0.00 0.00 0.00 2.57
687 728 6.056428 TCAGATCGATTCAAGCATTCAATG 57.944 37.500 0.00 0.00 0.00 2.82
688 729 5.008316 TCAGATCGATTCAAGCATTCAATGG 59.992 40.000 0.00 0.00 0.00 3.16
695 736 1.987770 CAAGCATTCAATGGCAACGAC 59.012 47.619 0.00 0.00 42.51 4.34
727 768 1.850289 TGCTGGTCCTTAGGGGCAA 60.850 57.895 0.00 0.00 39.39 4.52
744 785 0.868406 CAAGTGCACGAAGACTTCCC 59.132 55.000 12.01 0.00 29.73 3.97
746 787 1.300697 GTGCACGAAGACTTCCCGT 60.301 57.895 9.63 2.94 36.95 5.28
772 813 2.126031 GACAAGGTCGACCGGCTC 60.126 66.667 28.26 18.72 42.08 4.70
774 815 4.796231 CAAGGTCGACCGGCTCCG 62.796 72.222 28.26 10.75 42.08 4.63
797 839 4.025401 GGAGCGGCAACAACGGTG 62.025 66.667 0.00 0.00 42.62 4.94
802 844 3.578272 GGCAACAACGGTGCGTCA 61.578 61.111 0.00 0.00 39.99 4.35
815 857 3.175240 CGTCAGCGGCTCGTTCTG 61.175 66.667 0.00 0.00 0.00 3.02
817 859 4.742201 TCAGCGGCTCGTTCTGGC 62.742 66.667 0.00 0.00 0.00 4.85
834 876 3.554692 CGGCGGCAGTGATCGTTC 61.555 66.667 10.53 0.00 0.00 3.95
839 881 1.080093 GGCAGTGATCGTTCGGTGA 60.080 57.895 0.00 0.00 0.00 4.02
852 894 0.459899 TCGGTGATCCATGAACCTCG 59.540 55.000 0.00 0.00 0.00 4.63
890 932 8.514330 TTATGTTTGAGGTGTTTTGTACTTCT 57.486 30.769 0.00 0.00 0.00 2.85
898 940 7.502226 TGAGGTGTTTTGTACTTCTGATGAATT 59.498 33.333 0.00 0.00 0.00 2.17
900 942 8.352942 AGGTGTTTTGTACTTCTGATGAATTTC 58.647 33.333 0.00 0.00 0.00 2.17
977 1023 2.103094 TGAGTTGAGGCTTCCCATATCG 59.897 50.000 0.00 0.00 0.00 2.92
994 1040 9.200817 TCCCATATCGAAGATATGTTATGATCA 57.799 33.333 21.49 0.00 45.12 2.92
1083 1129 3.132801 GCTGCTGCTTCTCTGCCC 61.133 66.667 8.53 0.00 38.68 5.36
1139 1185 0.035152 CCAGCCTGACAGCAATGGTA 60.035 55.000 0.00 0.00 34.23 3.25
1416 1523 5.428253 ACATTTCAGCCGACTACATAACAT 58.572 37.500 0.00 0.00 0.00 2.71
1460 1576 2.510238 GTCCGCAGCTTCGCATCT 60.510 61.111 0.00 0.00 0.00 2.90
1463 1579 2.816958 CGCAGCTTCGCATCTGGT 60.817 61.111 0.00 0.00 0.00 4.00
1520 1636 1.112113 GCCTCAAGTACCTCATCCGA 58.888 55.000 0.00 0.00 0.00 4.55
1556 1672 1.290955 CAACTACGACGGCCTCCAA 59.709 57.895 0.00 0.00 0.00 3.53
1652 1768 3.770040 TCCGTGGAGGCCATCGTG 61.770 66.667 5.01 0.00 40.77 4.35
1730 1846 3.118482 CCTTCATCTCTTTGCTGGAGCTA 60.118 47.826 0.00 0.00 42.66 3.32
1825 1941 0.377203 GGCCGGATCGATGAAAACAC 59.623 55.000 5.05 0.00 0.00 3.32
1863 1982 5.121380 AGCCAAAGATCACATACTTCCAT 57.879 39.130 0.00 0.00 0.00 3.41
1864 1983 5.513233 AGCCAAAGATCACATACTTCCATT 58.487 37.500 0.00 0.00 0.00 3.16
1865 1984 5.954150 AGCCAAAGATCACATACTTCCATTT 59.046 36.000 0.00 0.00 0.00 2.32
1866 1985 6.096001 AGCCAAAGATCACATACTTCCATTTC 59.904 38.462 0.00 0.00 0.00 2.17
1867 1986 6.681368 GCCAAAGATCACATACTTCCATTTCC 60.681 42.308 0.00 0.00 0.00 3.13
1868 1987 6.377996 CCAAAGATCACATACTTCCATTTCCA 59.622 38.462 0.00 0.00 0.00 3.53
1869 1988 7.069085 CCAAAGATCACATACTTCCATTTCCAT 59.931 37.037 0.00 0.00 0.00 3.41
1870 1989 9.123902 CAAAGATCACATACTTCCATTTCCATA 57.876 33.333 0.00 0.00 0.00 2.74
1871 1990 9.872684 AAAGATCACATACTTCCATTTCCATAT 57.127 29.630 0.00 0.00 0.00 1.78
1872 1991 8.859236 AGATCACATACTTCCATTTCCATATG 57.141 34.615 0.00 0.00 0.00 1.78
1873 1992 8.443176 AGATCACATACTTCCATTTCCATATGT 58.557 33.333 1.24 0.00 34.41 2.29
1874 1993 9.071276 GATCACATACTTCCATTTCCATATGTT 57.929 33.333 1.24 0.00 32.35 2.71
1876 1995 9.913310 TCACATACTTCCATTTCCATATGTTAA 57.087 29.630 1.24 0.00 32.35 2.01
1884 2003 8.729805 TCCATTTCCATATGTTAAAATTTGCC 57.270 30.769 1.24 0.00 0.00 4.52
1924 2180 4.647611 TGTCATGGACTTTAACCACGAAT 58.352 39.130 0.00 0.00 40.36 3.34
2007 2272 7.311092 TGGTTGAACCTACCGATATATCAAT 57.689 36.000 16.33 2.62 39.58 2.57
2011 2276 7.533289 TGAACCTACCGATATATCAATGACA 57.467 36.000 13.11 0.49 0.00 3.58
2012 2277 7.375834 TGAACCTACCGATATATCAATGACAC 58.624 38.462 13.11 0.00 0.00 3.67
2026 2291 0.899720 TGACACGGAAGGTCATACCC 59.100 55.000 0.00 0.00 39.75 3.69
2041 2306 0.609957 TACCCGACAGCCTCTTCGAA 60.610 55.000 0.00 0.00 37.43 3.71
2131 2396 2.525592 CCTGAGCCCCAACCCAAA 59.474 61.111 0.00 0.00 0.00 3.28
2143 2408 0.530288 AACCCAAAAATCCATCGCCG 59.470 50.000 0.00 0.00 0.00 6.46
2154 2419 1.594293 CATCGCCGGGGTACATCAC 60.594 63.158 19.13 0.00 0.00 3.06
2177 2442 3.516981 TCATGCACTTCTCTGAGCTAC 57.483 47.619 0.00 0.00 0.00 3.58
2179 2444 3.450096 TCATGCACTTCTCTGAGCTACAT 59.550 43.478 0.00 0.00 0.00 2.29
2180 2445 3.242549 TGCACTTCTCTGAGCTACATG 57.757 47.619 0.00 0.00 0.00 3.21
2185 2450 4.081752 CACTTCTCTGAGCTACATGTCCTT 60.082 45.833 0.00 0.00 0.00 3.36
2187 2452 3.027412 TCTCTGAGCTACATGTCCTTCC 58.973 50.000 0.00 0.00 0.00 3.46
2188 2453 2.762887 CTCTGAGCTACATGTCCTTCCA 59.237 50.000 0.00 0.00 0.00 3.53
2194 2459 4.265073 AGCTACATGTCCTTCCATTCAAC 58.735 43.478 0.00 0.00 0.00 3.18
2196 2461 1.812571 ACATGTCCTTCCATTCAACGC 59.187 47.619 0.00 0.00 0.00 4.84
2199 2464 1.271871 TGTCCTTCCATTCAACGCCAT 60.272 47.619 0.00 0.00 0.00 4.40
2211 2477 4.902308 CGCCATACGTGAGTTCCA 57.098 55.556 0.00 0.00 46.40 3.53
2212 2478 2.369870 CGCCATACGTGAGTTCCAC 58.630 57.895 0.00 0.00 46.40 4.02
2225 2491 2.480419 GAGTTCCACATCAACCTCAACG 59.520 50.000 0.00 0.00 0.00 4.10
2226 2492 1.535462 GTTCCACATCAACCTCAACGG 59.465 52.381 0.00 0.00 39.35 4.44
2229 2495 1.070786 ACATCAACCTCAACGGCGT 59.929 52.632 6.77 6.77 35.61 5.68
2231 2497 1.070786 ATCAACCTCAACGGCGTGT 59.929 52.632 15.70 3.59 35.61 4.49
2237 2503 1.667830 CTCAACGGCGTGTCATGGT 60.668 57.895 15.70 0.00 0.00 3.55
2239 2505 0.248012 TCAACGGCGTGTCATGGTAT 59.752 50.000 15.70 0.00 0.00 2.73
2243 2509 0.461163 CGGCGTGTCATGGTATCCAA 60.461 55.000 0.00 0.00 36.95 3.53
2252 2518 3.126343 GTCATGGTATCCAAACAACGTCC 59.874 47.826 0.00 0.00 36.95 4.79
2268 2534 2.948315 ACGTCCTACCGAAATACCTCTC 59.052 50.000 0.00 0.00 0.00 3.20
2272 2538 2.036089 CCTACCGAAATACCTCTCTGGC 59.964 54.545 0.00 0.00 40.22 4.85
2273 2539 1.568504 ACCGAAATACCTCTCTGGCA 58.431 50.000 0.00 0.00 40.22 4.92
2275 2541 1.207089 CCGAAATACCTCTCTGGCACA 59.793 52.381 0.00 0.00 40.22 4.57
2291 2557 2.843701 GCACAGCCATCTACAATAGCT 58.156 47.619 0.00 0.00 0.00 3.32
2301 2567 4.008916 TCTACAATAGCTTCCCCTCCTT 57.991 45.455 0.00 0.00 0.00 3.36
2308 2574 0.988063 GCTTCCCCTCCTTGAAGAGT 59.012 55.000 0.00 0.00 40.30 3.24
2310 2576 2.260822 CTTCCCCTCCTTGAAGAGTCA 58.739 52.381 0.00 0.00 40.30 3.41
2315 2581 3.165875 CCCTCCTTGAAGAGTCACTACA 58.834 50.000 0.00 0.00 31.90 2.74
2320 2586 5.784177 TCCTTGAAGAGTCACTACAACATC 58.216 41.667 0.00 0.00 31.90 3.06
2329 2595 5.668471 AGTCACTACAACATCTCCATCATG 58.332 41.667 0.00 0.00 0.00 3.07
2337 2603 2.687418 ATCTCCATCATGCCCACCGC 62.687 60.000 0.00 0.00 38.31 5.68
2338 2604 3.410628 TCCATCATGCCCACCGCT 61.411 61.111 0.00 0.00 38.78 5.52
2347 2613 1.220749 GCCCACCGCTAGATCAACA 59.779 57.895 0.00 0.00 0.00 3.33
2376 2642 6.127814 CCGCCTATCATCAATGCTATTGAAAT 60.128 38.462 13.21 12.10 31.55 2.17
2377 2643 7.066163 CCGCCTATCATCAATGCTATTGAAATA 59.934 37.037 13.21 12.43 31.55 1.40
2387 2653 7.713073 TCAATGCTATTGAAATATACACGGTCA 59.287 33.333 8.52 0.00 0.00 4.02
2417 2683 3.530910 AACCTTGGCACCGACTCCG 62.531 63.158 0.00 0.00 0.00 4.63
2444 2710 4.247258 TGGTACGTTTTATTCAGACGCAT 58.753 39.130 0.00 0.00 40.22 4.73
2448 2714 7.064847 TGGTACGTTTTATTCAGACGCATAAAT 59.935 33.333 0.00 0.00 40.22 1.40
2449 2715 8.542132 GGTACGTTTTATTCAGACGCATAAATA 58.458 33.333 0.00 0.00 40.22 1.40
2450 2716 9.349787 GTACGTTTTATTCAGACGCATAAATAC 57.650 33.333 0.00 0.00 40.22 1.89
2451 2717 8.193250 ACGTTTTATTCAGACGCATAAATACT 57.807 30.769 0.00 0.00 40.22 2.12
2452 2718 8.662141 ACGTTTTATTCAGACGCATAAATACTT 58.338 29.630 0.00 0.00 40.22 2.24
2478 2744 3.945981 TTTTTCGATAAAAGGGGGCAC 57.054 42.857 0.00 0.00 36.02 5.01
2479 2745 2.588464 TTTCGATAAAAGGGGGCACA 57.412 45.000 0.00 0.00 0.00 4.57
2480 2746 1.828979 TTCGATAAAAGGGGGCACAC 58.171 50.000 0.00 0.00 0.00 3.82
2481 2747 0.693622 TCGATAAAAGGGGGCACACA 59.306 50.000 0.00 0.00 0.00 3.72
2482 2748 0.808755 CGATAAAAGGGGGCACACAC 59.191 55.000 0.00 0.00 0.00 3.82
2483 2749 1.182667 GATAAAAGGGGGCACACACC 58.817 55.000 0.00 0.00 0.00 4.16
2484 2750 0.610785 ATAAAAGGGGGCACACACCG 60.611 55.000 0.00 0.00 0.00 4.94
2491 2757 3.302344 GGCACACACCGCCCATTT 61.302 61.111 0.00 0.00 44.22 2.32
2492 2758 2.733945 GCACACACCGCCCATTTT 59.266 55.556 0.00 0.00 0.00 1.82
2493 2759 1.372872 GCACACACCGCCCATTTTC 60.373 57.895 0.00 0.00 0.00 2.29
2494 2760 2.037053 CACACACCGCCCATTTTCA 58.963 52.632 0.00 0.00 0.00 2.69
2495 2761 0.602562 CACACACCGCCCATTTTCAT 59.397 50.000 0.00 0.00 0.00 2.57
2496 2762 1.000731 CACACACCGCCCATTTTCATT 59.999 47.619 0.00 0.00 0.00 2.57
2497 2763 1.000731 ACACACCGCCCATTTTCATTG 59.999 47.619 0.00 0.00 0.00 2.82
2498 2764 0.037419 ACACCGCCCATTTTCATTGC 60.037 50.000 0.00 0.00 0.00 3.56
2499 2765 1.077645 CACCGCCCATTTTCATTGCG 61.078 55.000 0.00 0.00 44.47 4.85
2511 2777 5.452078 TTTTCATTGCGAAAATGGAGTCT 57.548 34.783 10.32 0.00 46.33 3.24
2512 2778 4.424061 TTCATTGCGAAAATGGAGTCTG 57.576 40.909 10.32 0.00 0.00 3.51
2513 2779 2.749076 TCATTGCGAAAATGGAGTCTGG 59.251 45.455 10.32 0.00 0.00 3.86
2514 2780 1.533625 TTGCGAAAATGGAGTCTGGG 58.466 50.000 0.00 0.00 0.00 4.45
2515 2781 0.690192 TGCGAAAATGGAGTCTGGGA 59.310 50.000 0.00 0.00 0.00 4.37
2516 2782 1.281867 TGCGAAAATGGAGTCTGGGAT 59.718 47.619 0.00 0.00 0.00 3.85
2517 2783 2.503765 TGCGAAAATGGAGTCTGGGATA 59.496 45.455 0.00 0.00 0.00 2.59
2518 2784 2.872858 GCGAAAATGGAGTCTGGGATAC 59.127 50.000 0.00 0.00 0.00 2.24
2519 2785 3.681594 GCGAAAATGGAGTCTGGGATACA 60.682 47.826 0.00 0.00 39.74 2.29
2520 2786 4.708177 CGAAAATGGAGTCTGGGATACAT 58.292 43.478 0.00 0.00 39.74 2.29
2521 2787 4.752101 CGAAAATGGAGTCTGGGATACATC 59.248 45.833 0.00 0.00 39.74 3.06
2522 2788 5.684704 GAAAATGGAGTCTGGGATACATCA 58.315 41.667 0.00 0.00 39.74 3.07
2523 2789 4.696479 AATGGAGTCTGGGATACATCAC 57.304 45.455 0.00 0.00 39.74 3.06
2524 2790 3.404869 TGGAGTCTGGGATACATCACT 57.595 47.619 0.00 0.00 39.74 3.41
2525 2791 3.724478 TGGAGTCTGGGATACATCACTT 58.276 45.455 0.00 0.00 39.74 3.16
2526 2792 3.452264 TGGAGTCTGGGATACATCACTTG 59.548 47.826 0.00 0.00 39.74 3.16
2527 2793 3.452627 GGAGTCTGGGATACATCACTTGT 59.547 47.826 0.00 0.00 42.62 3.16
2528 2794 4.080863 GGAGTCTGGGATACATCACTTGTT 60.081 45.833 0.00 0.00 39.87 2.83
2529 2795 5.491982 GAGTCTGGGATACATCACTTGTTT 58.508 41.667 0.00 0.00 39.87 2.83
2530 2796 5.880901 AGTCTGGGATACATCACTTGTTTT 58.119 37.500 0.00 0.00 39.87 2.43
2531 2797 5.707298 AGTCTGGGATACATCACTTGTTTTG 59.293 40.000 0.00 0.00 39.87 2.44
2532 2798 5.705441 GTCTGGGATACATCACTTGTTTTGA 59.295 40.000 0.00 0.00 39.87 2.69
2533 2799 6.206634 GTCTGGGATACATCACTTGTTTTGAA 59.793 38.462 0.00 0.00 39.87 2.69
2534 2800 6.775142 TCTGGGATACATCACTTGTTTTGAAA 59.225 34.615 0.00 0.00 39.87 2.69
2535 2801 7.286546 TCTGGGATACATCACTTGTTTTGAAAA 59.713 33.333 0.00 0.00 39.87 2.29
2536 2802 7.961351 TGGGATACATCACTTGTTTTGAAAAT 58.039 30.769 0.00 0.00 39.87 1.82
2537 2803 8.428063 TGGGATACATCACTTGTTTTGAAAATT 58.572 29.630 0.00 0.00 39.87 1.82
2538 2804 9.271828 GGGATACATCACTTGTTTTGAAAATTT 57.728 29.630 0.00 0.00 39.87 1.82
2542 2808 8.545229 ACATCACTTGTTTTGAAAATTTGACA 57.455 26.923 0.00 0.00 33.74 3.58
2543 2809 8.658609 ACATCACTTGTTTTGAAAATTTGACAG 58.341 29.630 0.00 0.00 33.74 3.51
2544 2810 7.593875 TCACTTGTTTTGAAAATTTGACAGG 57.406 32.000 0.00 0.00 0.00 4.00
2545 2811 7.382110 TCACTTGTTTTGAAAATTTGACAGGA 58.618 30.769 0.00 0.00 0.00 3.86
2546 2812 7.545265 TCACTTGTTTTGAAAATTTGACAGGAG 59.455 33.333 0.00 0.00 0.00 3.69
2547 2813 6.313658 ACTTGTTTTGAAAATTTGACAGGAGC 59.686 34.615 0.00 0.00 0.00 4.70
2548 2814 5.976458 TGTTTTGAAAATTTGACAGGAGCT 58.024 33.333 0.00 0.00 0.00 4.09
2549 2815 6.042143 TGTTTTGAAAATTTGACAGGAGCTC 58.958 36.000 4.71 4.71 0.00 4.09
2550 2816 6.127366 TGTTTTGAAAATTTGACAGGAGCTCT 60.127 34.615 14.64 0.00 0.00 4.09
2560 2826 2.662006 CAGGAGCTCTGTCATTTCGA 57.338 50.000 14.64 0.00 38.64 3.71
2561 2827 3.176552 CAGGAGCTCTGTCATTTCGAT 57.823 47.619 14.64 0.00 38.64 3.59
2562 2828 3.529533 CAGGAGCTCTGTCATTTCGATT 58.470 45.455 14.64 0.00 38.64 3.34
2563 2829 4.686972 CAGGAGCTCTGTCATTTCGATTA 58.313 43.478 14.64 0.00 38.64 1.75
2564 2830 4.744137 CAGGAGCTCTGTCATTTCGATTAG 59.256 45.833 14.64 0.00 38.64 1.73
2565 2831 4.646945 AGGAGCTCTGTCATTTCGATTAGA 59.353 41.667 14.64 0.00 0.00 2.10
2566 2832 5.127845 AGGAGCTCTGTCATTTCGATTAGAA 59.872 40.000 14.64 0.00 37.01 2.10
2567 2833 5.461737 GGAGCTCTGTCATTTCGATTAGAAG 59.538 44.000 14.64 0.00 40.40 2.85
2568 2834 6.214191 AGCTCTGTCATTTCGATTAGAAGA 57.786 37.500 0.00 0.00 40.40 2.87
2569 2835 6.634805 AGCTCTGTCATTTCGATTAGAAGAA 58.365 36.000 0.00 0.00 40.40 2.52
2570 2836 6.756074 AGCTCTGTCATTTCGATTAGAAGAAG 59.244 38.462 0.00 0.00 40.40 2.85
2571 2837 6.754209 GCTCTGTCATTTCGATTAGAAGAAGA 59.246 38.462 0.00 0.00 40.40 2.87
2572 2838 7.043458 GCTCTGTCATTTCGATTAGAAGAAGAG 60.043 40.741 0.00 0.00 40.40 2.85
2573 2839 8.056407 TCTGTCATTTCGATTAGAAGAAGAGA 57.944 34.615 0.00 0.00 40.40 3.10
2574 2840 8.690884 TCTGTCATTTCGATTAGAAGAAGAGAT 58.309 33.333 0.00 0.00 40.40 2.75
2575 2841 9.311916 CTGTCATTTCGATTAGAAGAAGAGATT 57.688 33.333 0.00 0.00 40.40 2.40
2576 2842 9.658799 TGTCATTTCGATTAGAAGAAGAGATTT 57.341 29.630 0.00 0.00 40.40 2.17
2588 2854 8.956533 AGAAGAAGAGATTTAAGTTCATAGCC 57.043 34.615 0.00 0.00 0.00 3.93
2589 2855 8.543774 AGAAGAAGAGATTTAAGTTCATAGCCA 58.456 33.333 0.00 0.00 0.00 4.75
2590 2856 9.167311 GAAGAAGAGATTTAAGTTCATAGCCAA 57.833 33.333 0.00 0.00 0.00 4.52
2591 2857 8.729805 AGAAGAGATTTAAGTTCATAGCCAAG 57.270 34.615 0.00 0.00 0.00 3.61
2592 2858 6.934048 AGAGATTTAAGTTCATAGCCAAGC 57.066 37.500 0.00 0.00 0.00 4.01
2593 2859 6.418101 AGAGATTTAAGTTCATAGCCAAGCA 58.582 36.000 0.00 0.00 0.00 3.91
2594 2860 6.886459 AGAGATTTAAGTTCATAGCCAAGCAA 59.114 34.615 0.00 0.00 0.00 3.91
2595 2861 7.559170 AGAGATTTAAGTTCATAGCCAAGCAAT 59.441 33.333 0.00 0.00 0.00 3.56
2596 2862 8.752005 AGATTTAAGTTCATAGCCAAGCAATA 57.248 30.769 0.00 0.00 0.00 1.90
2597 2863 9.359653 AGATTTAAGTTCATAGCCAAGCAATAT 57.640 29.630 0.00 0.00 0.00 1.28
2598 2864 9.971922 GATTTAAGTTCATAGCCAAGCAATATT 57.028 29.630 0.00 0.00 0.00 1.28
2602 2868 7.880160 AGTTCATAGCCAAGCAATATTAACA 57.120 32.000 0.00 0.00 0.00 2.41
2603 2869 7.707104 AGTTCATAGCCAAGCAATATTAACAC 58.293 34.615 0.00 0.00 0.00 3.32
2604 2870 7.557719 AGTTCATAGCCAAGCAATATTAACACT 59.442 33.333 0.00 0.00 0.00 3.55
2605 2871 8.836413 GTTCATAGCCAAGCAATATTAACACTA 58.164 33.333 0.00 0.00 0.00 2.74
2606 2872 8.607441 TCATAGCCAAGCAATATTAACACTAG 57.393 34.615 0.00 0.00 0.00 2.57
2607 2873 7.661437 TCATAGCCAAGCAATATTAACACTAGG 59.339 37.037 0.00 0.00 0.00 3.02
2608 2874 4.580580 AGCCAAGCAATATTAACACTAGGC 59.419 41.667 0.00 0.00 37.52 3.93
2609 2875 4.580580 GCCAAGCAATATTAACACTAGGCT 59.419 41.667 0.00 0.00 34.59 4.58
2610 2876 5.067805 GCCAAGCAATATTAACACTAGGCTT 59.932 40.000 0.00 0.00 40.64 4.35
2611 2877 6.405842 GCCAAGCAATATTAACACTAGGCTTT 60.406 38.462 0.00 0.00 38.19 3.51
2612 2878 6.974622 CCAAGCAATATTAACACTAGGCTTTG 59.025 38.462 0.00 0.00 38.19 2.77
2613 2879 6.136541 AGCAATATTAACACTAGGCTTTGC 57.863 37.500 0.00 0.00 37.72 3.68
2626 2892 3.510388 GGCTTTGCCTAGGTGAAAATC 57.490 47.619 11.31 5.05 46.69 2.17
2627 2893 2.825532 GGCTTTGCCTAGGTGAAAATCA 59.174 45.455 11.31 0.00 46.69 2.57
2628 2894 3.119352 GGCTTTGCCTAGGTGAAAATCAG 60.119 47.826 11.31 0.00 46.69 2.90
2629 2895 3.674410 GCTTTGCCTAGGTGAAAATCAGC 60.674 47.826 11.31 6.07 44.62 4.26
2630 2896 2.128771 TGCCTAGGTGAAAATCAGCC 57.871 50.000 11.31 0.00 45.34 4.85
2631 2897 1.340991 TGCCTAGGTGAAAATCAGCCC 60.341 52.381 11.31 0.00 45.34 5.19
2632 2898 2.024306 GCCTAGGTGAAAATCAGCCCC 61.024 57.143 11.31 0.00 45.34 5.80
2633 2899 1.410224 CCTAGGTGAAAATCAGCCCCC 60.410 57.143 0.00 0.00 45.34 5.40
2634 2900 1.566231 CTAGGTGAAAATCAGCCCCCT 59.434 52.381 5.97 0.08 45.34 4.79
2635 2901 0.786435 AGGTGAAAATCAGCCCCCTT 59.214 50.000 5.97 0.00 45.34 3.95
2636 2902 1.186200 GGTGAAAATCAGCCCCCTTC 58.814 55.000 0.00 0.00 38.84 3.46
2637 2903 1.549950 GGTGAAAATCAGCCCCCTTCA 60.550 52.381 0.00 0.00 38.84 3.02
2638 2904 2.460669 GTGAAAATCAGCCCCCTTCAT 58.539 47.619 0.00 0.00 0.00 2.57
2639 2905 2.428530 GTGAAAATCAGCCCCCTTCATC 59.571 50.000 0.00 0.00 0.00 2.92
2640 2906 2.034878 GAAAATCAGCCCCCTTCATCC 58.965 52.381 0.00 0.00 0.00 3.51
2641 2907 1.312884 AAATCAGCCCCCTTCATCCT 58.687 50.000 0.00 0.00 0.00 3.24
2642 2908 2.212752 AATCAGCCCCCTTCATCCTA 57.787 50.000 0.00 0.00 0.00 2.94
2643 2909 2.212752 ATCAGCCCCCTTCATCCTAA 57.787 50.000 0.00 0.00 0.00 2.69
2644 2910 1.979809 TCAGCCCCCTTCATCCTAAA 58.020 50.000 0.00 0.00 0.00 1.85
2645 2911 1.564348 TCAGCCCCCTTCATCCTAAAC 59.436 52.381 0.00 0.00 0.00 2.01
2646 2912 1.284785 CAGCCCCCTTCATCCTAAACA 59.715 52.381 0.00 0.00 0.00 2.83
2647 2913 2.000048 AGCCCCCTTCATCCTAAACAA 59.000 47.619 0.00 0.00 0.00 2.83
2648 2914 2.100197 GCCCCCTTCATCCTAAACAAC 58.900 52.381 0.00 0.00 0.00 3.32
2649 2915 2.291605 GCCCCCTTCATCCTAAACAACT 60.292 50.000 0.00 0.00 0.00 3.16
2650 2916 3.621558 CCCCCTTCATCCTAAACAACTC 58.378 50.000 0.00 0.00 0.00 3.01
2651 2917 3.267031 CCCCCTTCATCCTAAACAACTCT 59.733 47.826 0.00 0.00 0.00 3.24
2652 2918 4.473559 CCCCCTTCATCCTAAACAACTCTA 59.526 45.833 0.00 0.00 0.00 2.43
2653 2919 5.132816 CCCCCTTCATCCTAAACAACTCTAT 59.867 44.000 0.00 0.00 0.00 1.98
2654 2920 6.058183 CCCCTTCATCCTAAACAACTCTATG 58.942 44.000 0.00 0.00 0.00 2.23
2655 2921 6.126768 CCCCTTCATCCTAAACAACTCTATGA 60.127 42.308 0.00 0.00 0.00 2.15
2656 2922 7.338710 CCCTTCATCCTAAACAACTCTATGAA 58.661 38.462 0.00 0.00 32.60 2.57
2657 2923 7.829211 CCCTTCATCCTAAACAACTCTATGAAA 59.171 37.037 0.00 0.00 33.04 2.69
2658 2924 9.401058 CCTTCATCCTAAACAACTCTATGAAAT 57.599 33.333 0.00 0.00 33.04 2.17
2664 2930 9.120538 TCCTAAACAACTCTATGAAATTATGGC 57.879 33.333 0.00 0.00 0.00 4.40
2665 2931 9.125026 CCTAAACAACTCTATGAAATTATGGCT 57.875 33.333 0.00 0.00 0.00 4.75
2666 2932 9.941664 CTAAACAACTCTATGAAATTATGGCTG 57.058 33.333 0.00 0.00 0.00 4.85
2667 2933 6.382869 ACAACTCTATGAAATTATGGCTGC 57.617 37.500 0.00 0.00 0.00 5.25
2668 2934 5.887598 ACAACTCTATGAAATTATGGCTGCA 59.112 36.000 0.50 0.00 0.00 4.41
2669 2935 6.548622 ACAACTCTATGAAATTATGGCTGCAT 59.451 34.615 0.50 0.00 0.00 3.96
2670 2936 6.570672 ACTCTATGAAATTATGGCTGCATG 57.429 37.500 0.50 0.00 0.00 4.06
2671 2937 5.048224 ACTCTATGAAATTATGGCTGCATGC 60.048 40.000 11.82 11.82 41.94 4.06
2672 2938 4.828387 TCTATGAAATTATGGCTGCATGCA 59.172 37.500 21.29 21.29 45.15 3.96
2673 2939 4.617253 ATGAAATTATGGCTGCATGCAT 57.383 36.364 22.97 9.00 45.15 3.96
2674 2940 3.985008 TGAAATTATGGCTGCATGCATC 58.015 40.909 22.97 17.75 45.15 3.91
2675 2941 2.717580 AATTATGGCTGCATGCATCG 57.282 45.000 22.97 12.00 45.15 3.84
2676 2942 1.900245 ATTATGGCTGCATGCATCGA 58.100 45.000 22.97 15.35 45.15 3.59
2677 2943 1.900245 TTATGGCTGCATGCATCGAT 58.100 45.000 22.97 21.43 45.15 3.59
2678 2944 1.900245 TATGGCTGCATGCATCGATT 58.100 45.000 22.97 7.71 45.15 3.34
2679 2945 0.313987 ATGGCTGCATGCATCGATTG 59.686 50.000 22.97 9.56 45.15 2.67
2680 2946 0.748729 TGGCTGCATGCATCGATTGA 60.749 50.000 22.97 0.00 45.15 2.57
2681 2947 0.596577 GGCTGCATGCATCGATTGAT 59.403 50.000 22.97 0.00 45.15 2.57
2690 2956 0.873054 CATCGATTGATGCAGAGGCC 59.127 55.000 10.05 0.00 45.06 5.19
2691 2957 0.602106 ATCGATTGATGCAGAGGCCG 60.602 55.000 0.00 0.00 40.13 6.13
2692 2958 2.249535 CGATTGATGCAGAGGCCGG 61.250 63.158 0.00 0.00 40.13 6.13
2693 2959 1.895707 GATTGATGCAGAGGCCGGG 60.896 63.158 2.18 0.00 40.13 5.73
2694 2960 3.426309 ATTGATGCAGAGGCCGGGG 62.426 63.158 2.18 0.00 40.13 5.73
2700 2966 4.803908 CAGAGGCCGGGGCTTTCC 62.804 72.222 25.20 12.05 38.98 3.13
2702 2968 4.048470 GAGGCCGGGGCTTTCCTT 62.048 66.667 25.20 0.11 38.98 3.36
2703 2969 2.612746 AGGCCGGGGCTTTCCTTA 60.613 61.111 18.71 0.00 41.60 2.69
2704 2970 1.996070 GAGGCCGGGGCTTTCCTTAT 61.996 60.000 25.20 0.00 38.98 1.73
2705 2971 1.076265 GGCCGGGGCTTTCCTTATT 60.076 57.895 14.22 0.00 41.60 1.40
2706 2972 0.184211 GGCCGGGGCTTTCCTTATTA 59.816 55.000 14.22 0.00 41.60 0.98
2707 2973 1.410507 GGCCGGGGCTTTCCTTATTAA 60.411 52.381 14.22 0.00 41.60 1.40
2708 2974 2.380941 GCCGGGGCTTTCCTTATTAAA 58.619 47.619 2.18 0.00 38.26 1.52
2709 2975 2.761767 GCCGGGGCTTTCCTTATTAAAA 59.238 45.455 2.18 0.00 38.26 1.52
2710 2976 3.196039 GCCGGGGCTTTCCTTATTAAAAA 59.804 43.478 2.18 0.00 38.26 1.94
2734 3000 7.730364 AAAACAACTCTATGAACACTGGTAG 57.270 36.000 0.00 0.00 0.00 3.18
2735 3001 6.665992 AACAACTCTATGAACACTGGTAGA 57.334 37.500 0.00 0.00 0.00 2.59
2736 3002 6.665992 ACAACTCTATGAACACTGGTAGAA 57.334 37.500 0.00 0.00 0.00 2.10
2737 3003 7.062749 ACAACTCTATGAACACTGGTAGAAA 57.937 36.000 0.00 0.00 0.00 2.52
2738 3004 7.506114 ACAACTCTATGAACACTGGTAGAAAA 58.494 34.615 0.00 0.00 0.00 2.29
2739 3005 7.990886 ACAACTCTATGAACACTGGTAGAAAAA 59.009 33.333 0.00 0.00 0.00 1.94
2755 3021 1.919240 AAAAAGCCCTTTAGTCCCGG 58.081 50.000 0.00 0.00 31.63 5.73
2756 3022 0.775542 AAAAGCCCTTTAGTCCCGGT 59.224 50.000 0.00 0.00 31.63 5.28
2757 3023 0.775542 AAAGCCCTTTAGTCCCGGTT 59.224 50.000 0.00 0.00 0.00 4.44
2758 3024 0.327259 AAGCCCTTTAGTCCCGGTTC 59.673 55.000 0.00 0.00 0.00 3.62
2759 3025 1.449070 GCCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
2760 3026 1.449070 CCCTTTAGTCCCGGTTCGC 60.449 63.158 0.00 0.00 0.00 4.70
2761 3027 1.294138 CCTTTAGTCCCGGTTCGCA 59.706 57.895 0.00 0.00 0.00 5.10
2762 3028 0.320946 CCTTTAGTCCCGGTTCGCAA 60.321 55.000 0.00 0.00 0.00 4.85
2763 3029 1.515081 CTTTAGTCCCGGTTCGCAAA 58.485 50.000 0.00 0.00 0.00 3.68
2764 3030 1.463444 CTTTAGTCCCGGTTCGCAAAG 59.537 52.381 0.00 5.06 0.00 2.77
2765 3031 0.320946 TTAGTCCCGGTTCGCAAAGG 60.321 55.000 0.00 0.00 0.00 3.11
2766 3032 2.791501 TAGTCCCGGTTCGCAAAGGC 62.792 60.000 0.00 0.00 0.00 4.35
2769 3035 2.983592 CCGGTTCGCAAAGGCCTT 60.984 61.111 13.78 13.78 36.38 4.35
2770 3036 2.561037 CCGGTTCGCAAAGGCCTTT 61.561 57.895 25.47 25.47 36.38 3.11
2771 3037 1.238625 CCGGTTCGCAAAGGCCTTTA 61.239 55.000 29.94 12.86 36.38 1.85
2772 3038 0.168128 CGGTTCGCAAAGGCCTTTAG 59.832 55.000 29.94 24.65 36.38 1.85
2773 3039 1.244816 GGTTCGCAAAGGCCTTTAGT 58.755 50.000 29.94 6.35 36.38 2.24
2774 3040 1.199327 GGTTCGCAAAGGCCTTTAGTC 59.801 52.381 29.94 19.52 36.38 2.59
2775 3041 1.199327 GTTCGCAAAGGCCTTTAGTCC 59.801 52.381 29.94 16.69 36.38 3.85
2776 3042 0.322187 TCGCAAAGGCCTTTAGTCCC 60.322 55.000 29.94 14.43 36.38 4.46
2777 3043 1.644786 CGCAAAGGCCTTTAGTCCCG 61.645 60.000 29.94 21.01 36.38 5.14
2778 3044 1.313091 GCAAAGGCCTTTAGTCCCGG 61.313 60.000 29.94 16.67 0.00 5.73
2779 3045 1.001269 AAAGGCCTTTAGTCCCGGC 60.001 57.895 29.47 0.00 43.03 6.13
2780 3046 1.498176 AAAGGCCTTTAGTCCCGGCT 61.498 55.000 29.47 0.30 43.29 5.52
2781 3047 2.124695 GGCCTTTAGTCCCGGCTG 60.125 66.667 0.00 0.00 43.29 4.85
2782 3048 2.669240 GCCTTTAGTCCCGGCTGT 59.331 61.111 0.00 0.00 40.62 4.40
2783 3049 1.745489 GCCTTTAGTCCCGGCTGTG 60.745 63.158 0.00 0.00 40.62 3.66
2784 3050 1.745489 CCTTTAGTCCCGGCTGTGC 60.745 63.158 0.00 0.00 0.00 4.57
2785 3051 1.003839 CTTTAGTCCCGGCTGTGCA 60.004 57.895 0.00 0.00 0.00 4.57
2786 3052 0.605319 CTTTAGTCCCGGCTGTGCAA 60.605 55.000 0.00 0.00 0.00 4.08
2787 3053 0.887387 TTTAGTCCCGGCTGTGCAAC 60.887 55.000 0.00 0.00 37.35 4.17
2788 3054 2.741486 TTAGTCCCGGCTGTGCAACC 62.741 60.000 0.00 0.00 34.36 3.77
2794 3060 4.643387 GGCTGTGCAACCGGGACT 62.643 66.667 6.32 0.00 38.87 3.85
2795 3061 2.345991 GCTGTGCAACCGGGACTA 59.654 61.111 6.32 0.00 38.87 2.59
2796 3062 1.302192 GCTGTGCAACCGGGACTAA 60.302 57.895 6.32 0.00 38.87 2.24
2797 3063 0.887387 GCTGTGCAACCGGGACTAAA 60.887 55.000 6.32 0.00 38.87 1.85
2798 3064 1.821216 CTGTGCAACCGGGACTAAAT 58.179 50.000 6.32 0.00 38.87 1.40
2799 3065 2.937873 GCTGTGCAACCGGGACTAAATA 60.938 50.000 6.32 0.00 38.87 1.40
2800 3066 3.541632 CTGTGCAACCGGGACTAAATAT 58.458 45.455 6.32 0.00 38.87 1.28
2801 3067 3.275143 TGTGCAACCGGGACTAAATATG 58.725 45.455 6.32 0.00 38.87 1.78
2802 3068 2.032924 GTGCAACCGGGACTAAATATGC 59.967 50.000 6.32 2.60 34.56 3.14
2803 3069 1.263217 GCAACCGGGACTAAATATGCG 59.737 52.381 6.32 0.00 0.00 4.73
2804 3070 1.263217 CAACCGGGACTAAATATGCGC 59.737 52.381 6.32 0.00 0.00 6.09
2805 3071 0.599204 ACCGGGACTAAATATGCGCG 60.599 55.000 6.32 0.00 36.61 6.86
2806 3072 0.319211 CCGGGACTAAATATGCGCGA 60.319 55.000 12.10 0.00 38.72 5.87
2807 3073 0.782384 CGGGACTAAATATGCGCGAC 59.218 55.000 12.10 0.88 38.72 5.19
2808 3074 1.602165 CGGGACTAAATATGCGCGACT 60.602 52.381 12.10 0.00 38.72 4.18
2809 3075 2.351060 CGGGACTAAATATGCGCGACTA 60.351 50.000 12.10 0.00 38.72 2.59
2810 3076 3.645884 GGGACTAAATATGCGCGACTAA 58.354 45.455 12.10 0.00 0.00 2.24
2811 3077 4.053295 GGGACTAAATATGCGCGACTAAA 58.947 43.478 12.10 0.00 0.00 1.85
2812 3078 4.150098 GGGACTAAATATGCGCGACTAAAG 59.850 45.833 12.10 0.00 0.00 1.85
2813 3079 4.980434 GGACTAAATATGCGCGACTAAAGA 59.020 41.667 12.10 0.00 0.00 2.52
2814 3080 5.107951 GGACTAAATATGCGCGACTAAAGAC 60.108 44.000 12.10 0.00 0.00 3.01
2815 3081 4.743644 ACTAAATATGCGCGACTAAAGACC 59.256 41.667 12.10 0.00 0.00 3.85
2816 3082 2.150397 ATATGCGCGACTAAAGACCC 57.850 50.000 12.10 0.00 0.00 4.46
2817 3083 0.103572 TATGCGCGACTAAAGACCCC 59.896 55.000 12.10 0.00 0.00 4.95
2818 3084 2.510918 GCGCGACTAAAGACCCCC 60.511 66.667 12.10 0.00 0.00 5.40
2838 3104 4.222847 CCCCCTTAGTCGCGCCTC 62.223 72.222 0.00 0.00 0.00 4.70
2839 3105 3.148279 CCCCTTAGTCGCGCCTCT 61.148 66.667 0.00 2.63 0.00 3.69
2840 3106 2.722201 CCCCTTAGTCGCGCCTCTT 61.722 63.158 0.00 0.00 0.00 2.85
2841 3107 1.389609 CCCCTTAGTCGCGCCTCTTA 61.390 60.000 0.00 0.00 0.00 2.10
2842 3108 0.248949 CCCTTAGTCGCGCCTCTTAC 60.249 60.000 0.00 0.00 0.00 2.34
2843 3109 0.591741 CCTTAGTCGCGCCTCTTACG 60.592 60.000 0.00 0.00 0.00 3.18
2844 3110 0.376152 CTTAGTCGCGCCTCTTACGA 59.624 55.000 0.00 0.00 0.00 3.43
2845 3111 0.804364 TTAGTCGCGCCTCTTACGAA 59.196 50.000 0.00 0.00 37.60 3.85
2846 3112 0.097674 TAGTCGCGCCTCTTACGAAC 59.902 55.000 0.00 0.00 37.60 3.95
2847 3113 2.157073 GTCGCGCCTCTTACGAACC 61.157 63.158 0.00 0.00 37.60 3.62
2848 3114 3.245315 CGCGCCTCTTACGAACCG 61.245 66.667 0.00 0.00 0.00 4.44
2849 3115 3.551915 GCGCCTCTTACGAACCGC 61.552 66.667 0.00 0.00 33.61 5.68
2851 3117 2.180017 GCCTCTTACGAACCGCGA 59.820 61.111 8.23 0.00 44.57 5.87
2852 3118 2.157073 GCCTCTTACGAACCGCGAC 61.157 63.158 8.23 0.00 44.57 5.19
2853 3119 1.505353 CCTCTTACGAACCGCGACT 59.495 57.895 8.23 0.00 44.57 4.18
2854 3120 0.729116 CCTCTTACGAACCGCGACTA 59.271 55.000 8.23 0.00 44.57 2.59
2855 3121 1.131126 CCTCTTACGAACCGCGACTAA 59.869 52.381 8.23 0.00 44.57 2.24
2856 3122 2.414559 CCTCTTACGAACCGCGACTAAA 60.415 50.000 8.23 0.00 44.57 1.85
2857 3123 2.844804 CTCTTACGAACCGCGACTAAAG 59.155 50.000 8.23 3.58 44.57 1.85
2858 3124 1.916000 CTTACGAACCGCGACTAAAGG 59.084 52.381 8.23 0.00 44.57 3.11
2859 3125 0.456653 TACGAACCGCGACTAAAGGC 60.457 55.000 8.23 0.00 44.57 4.35
2860 3126 1.445582 CGAACCGCGACTAAAGGCT 60.446 57.895 8.23 0.00 44.57 4.58
2861 3127 1.012486 CGAACCGCGACTAAAGGCTT 61.012 55.000 8.23 0.00 44.57 4.35
2862 3128 1.154197 GAACCGCGACTAAAGGCTTT 58.846 50.000 17.76 17.76 0.00 3.51
2863 3129 2.340337 GAACCGCGACTAAAGGCTTTA 58.660 47.619 18.11 18.11 0.00 1.85
2864 3130 2.005971 ACCGCGACTAAAGGCTTTAG 57.994 50.000 34.37 34.37 46.26 1.85
3498 3764 1.804151 CTTGAATTGGTCGGAAGCGAA 59.196 47.619 0.00 0.00 0.00 4.70
3531 3797 0.830648 CCTCCTCCGCAAGTTATCCA 59.169 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.449251 TGTAAGTTTTCCGGTAATACTTTTGT 57.551 30.769 19.28 6.28 39.28 2.83
14 15 8.776470 TCTGTAAGTTTTCCGGTAATACTTTTG 58.224 33.333 19.28 13.21 39.28 2.44
15 16 8.907222 TCTGTAAGTTTTCCGGTAATACTTTT 57.093 30.769 19.28 6.99 39.28 2.27
18 19 8.200120 GGTATCTGTAAGTTTTCCGGTAATACT 58.800 37.037 0.00 2.77 31.52 2.12
29 32 6.228258 ACGTGTGATGGTATCTGTAAGTTTT 58.772 36.000 0.00 0.00 33.76 2.43
48 51 1.115930 AGTGAGCCCTCAAGACGTGT 61.116 55.000 0.00 0.00 41.85 4.49
50 53 0.759346 AAAGTGAGCCCTCAAGACGT 59.241 50.000 0.00 0.00 41.85 4.34
77 80 3.004629 ACGACATTACACTACCGACAACA 59.995 43.478 0.00 0.00 0.00 3.33
103 106 1.377202 GCTGCGGTGGATTGGAGAA 60.377 57.895 0.00 0.00 0.00 2.87
134 137 3.117888 TCTTCTGGGCACTTTGTTCTTCT 60.118 43.478 0.00 0.00 0.00 2.85
150 153 2.586792 CGGCCCCCTCTTCTTCTG 59.413 66.667 0.00 0.00 0.00 3.02
169 172 1.131883 CGAACTGGTCTACTACACCCG 59.868 57.143 0.00 0.00 32.24 5.28
172 175 2.670509 GCCACGAACTGGTCTACTACAC 60.671 54.545 0.00 0.00 42.99 2.90
179 182 1.006102 CGAAGCCACGAACTGGTCT 60.006 57.895 0.00 0.00 42.99 3.85
243 258 3.499406 AGGCAAGACATGGGCTGA 58.501 55.556 0.00 0.00 38.63 4.26
261 276 9.133627 GGTTTGCAGAGATTTTTATTCTCTTTC 57.866 33.333 0.57 0.00 46.01 2.62
376 412 2.093447 CCAGCAGGACCCAGTACTAAAG 60.093 54.545 0.00 0.00 36.89 1.85
407 443 3.000925 GTCGTTACACAAACACAGACAGG 59.999 47.826 0.00 0.00 38.03 4.00
418 456 4.511527 TGGTTAACCAAGTCGTTACACAA 58.488 39.130 25.19 0.00 44.35 3.33
487 525 6.520272 ACTTGTGCAGGCTTAATCTAGATAG 58.480 40.000 5.46 1.70 0.00 2.08
538 578 2.092646 TCCTAAGCCGTGTAAATGCCAT 60.093 45.455 0.00 0.00 0.00 4.40
539 579 1.279558 TCCTAAGCCGTGTAAATGCCA 59.720 47.619 0.00 0.00 0.00 4.92
542 582 3.857052 TCTGTCCTAAGCCGTGTAAATG 58.143 45.455 0.00 0.00 0.00 2.32
543 583 4.755266 ATCTGTCCTAAGCCGTGTAAAT 57.245 40.909 0.00 0.00 0.00 1.40
544 584 4.546829 AATCTGTCCTAAGCCGTGTAAA 57.453 40.909 0.00 0.00 0.00 2.01
545 585 4.951715 TCTAATCTGTCCTAAGCCGTGTAA 59.048 41.667 0.00 0.00 0.00 2.41
546 586 4.529897 TCTAATCTGTCCTAAGCCGTGTA 58.470 43.478 0.00 0.00 0.00 2.90
547 587 3.362706 TCTAATCTGTCCTAAGCCGTGT 58.637 45.455 0.00 0.00 0.00 4.49
548 588 4.302455 CATCTAATCTGTCCTAAGCCGTG 58.698 47.826 0.00 0.00 0.00 4.94
549 589 3.322254 CCATCTAATCTGTCCTAAGCCGT 59.678 47.826 0.00 0.00 0.00 5.68
550 590 3.574396 TCCATCTAATCTGTCCTAAGCCG 59.426 47.826 0.00 0.00 0.00 5.52
551 591 4.562552 GCTCCATCTAATCTGTCCTAAGCC 60.563 50.000 0.00 0.00 0.00 4.35
552 592 4.283212 AGCTCCATCTAATCTGTCCTAAGC 59.717 45.833 0.00 0.00 0.00 3.09
553 593 5.047377 GGAGCTCCATCTAATCTGTCCTAAG 60.047 48.000 28.43 0.00 35.64 2.18
556 596 3.238597 GGAGCTCCATCTAATCTGTCCT 58.761 50.000 28.43 0.00 35.64 3.85
561 601 0.972883 GCCGGAGCTCCATCTAATCT 59.027 55.000 31.67 0.00 35.50 2.40
563 603 1.115930 ACGCCGGAGCTCCATCTAAT 61.116 55.000 31.67 9.37 36.60 1.73
574 614 1.300233 GCAGGAATCTACGCCGGAG 60.300 63.158 5.05 3.72 0.00 4.63
578 618 1.889573 GCTGGCAGGAATCTACGCC 60.890 63.158 17.64 0.00 45.11 5.68
630 671 4.085884 CCAAATATCGTTGTTGCGTACAC 58.914 43.478 0.00 0.00 36.21 2.90
631 672 3.747010 ACCAAATATCGTTGTTGCGTACA 59.253 39.130 0.00 0.00 34.12 2.90
638 679 9.974980 AAAAATCTAACACCAAATATCGTTGTT 57.025 25.926 0.00 0.00 0.00 2.83
641 682 9.840427 CTGAAAAATCTAACACCAAATATCGTT 57.160 29.630 0.00 0.00 0.00 3.85
642 683 9.226606 TCTGAAAAATCTAACACCAAATATCGT 57.773 29.630 0.00 0.00 0.00 3.73
656 697 7.848223 TGCTTGAATCGATCTGAAAAATCTA 57.152 32.000 0.00 0.00 0.00 1.98
658 699 7.699391 TGAATGCTTGAATCGATCTGAAAAATC 59.301 33.333 0.00 0.00 0.00 2.17
662 703 6.499234 TTGAATGCTTGAATCGATCTGAAA 57.501 33.333 0.00 0.00 0.00 2.69
703 744 1.987855 CTAAGGACCAGCACCCCGA 60.988 63.158 0.00 0.00 0.00 5.14
708 749 2.137177 TTGCCCCTAAGGACCAGCAC 62.137 60.000 0.00 0.00 38.24 4.40
709 750 1.850289 TTGCCCCTAAGGACCAGCA 60.850 57.895 0.00 0.00 38.24 4.41
714 755 0.960861 GTGCACTTGCCCCTAAGGAC 60.961 60.000 10.32 0.00 41.18 3.85
727 768 1.006102 CGGGAAGTCTTCGTGCACT 60.006 57.895 16.19 0.00 0.00 4.40
744 785 1.618861 GACCTTGTCGATGACAGACG 58.381 55.000 0.00 0.00 43.69 4.18
772 813 4.169696 TTGCCGCTCCCATACCGG 62.170 66.667 0.00 0.00 44.58 5.28
774 815 1.377987 TTGTTGCCGCTCCCATACC 60.378 57.895 0.00 0.00 0.00 2.73
781 823 4.683334 GCACCGTTGTTGCCGCTC 62.683 66.667 0.00 0.00 0.00 5.03
788 830 3.636043 CGCTGACGCACCGTTGTT 61.636 61.111 0.00 0.00 41.37 2.83
817 859 3.554692 GAACGATCACTGCCGCCG 61.555 66.667 0.00 0.00 0.00 6.46
819 861 3.554692 CCGAACGATCACTGCCGC 61.555 66.667 0.00 0.00 0.00 6.53
820 862 2.126071 ACCGAACGATCACTGCCG 60.126 61.111 0.00 0.00 0.00 5.69
822 864 0.924090 GATCACCGAACGATCACTGC 59.076 55.000 0.00 0.00 39.30 4.40
823 865 1.135112 TGGATCACCGAACGATCACTG 60.135 52.381 9.79 0.00 40.93 3.66
824 866 1.182667 TGGATCACCGAACGATCACT 58.817 50.000 9.79 0.00 40.93 3.41
826 868 1.754226 TCATGGATCACCGAACGATCA 59.246 47.619 9.79 0.00 40.93 2.92
827 869 2.509052 TCATGGATCACCGAACGATC 57.491 50.000 0.00 0.00 38.86 3.69
828 870 2.550978 GTTCATGGATCACCGAACGAT 58.449 47.619 0.00 0.00 39.42 3.73
834 876 0.459899 TCGAGGTTCATGGATCACCG 59.540 55.000 0.00 0.00 39.42 4.94
839 881 7.645058 AAAAATTACATCGAGGTTCATGGAT 57.355 32.000 8.51 0.00 0.00 3.41
870 912 6.826231 TCATCAGAAGTACAAAACACCTCAAA 59.174 34.615 0.00 0.00 0.00 2.69
871 913 6.353323 TCATCAGAAGTACAAAACACCTCAA 58.647 36.000 0.00 0.00 0.00 3.02
872 914 5.924356 TCATCAGAAGTACAAAACACCTCA 58.076 37.500 0.00 0.00 0.00 3.86
873 915 6.861065 TTCATCAGAAGTACAAAACACCTC 57.139 37.500 0.00 0.00 0.00 3.85
874 916 7.823745 AATTCATCAGAAGTACAAAACACCT 57.176 32.000 0.00 0.00 37.14 4.00
875 917 8.352942 AGAAATTCATCAGAAGTACAAAACACC 58.647 33.333 0.00 0.00 37.14 4.16
994 1040 4.097589 GCAAGAAGCAGCTAATGGAGAATT 59.902 41.667 0.00 0.00 44.79 2.17
997 1043 2.636830 GCAAGAAGCAGCTAATGGAGA 58.363 47.619 0.00 0.00 44.79 3.71
1416 1523 0.463654 AAGCACTTGCACAAGGACGA 60.464 50.000 14.51 0.00 45.16 4.20
1460 1576 1.301401 GTAGCAGTTCCGCACACCA 60.301 57.895 0.00 0.00 0.00 4.17
1463 1579 1.663388 CGTGTAGCAGTTCCGCACA 60.663 57.895 0.00 0.00 0.00 4.57
1502 1618 1.067821 GCTCGGATGAGGTACTTGAGG 59.932 57.143 0.00 0.00 41.55 3.86
1520 1636 0.036164 TGCCGTACATGAACTTGGCT 59.964 50.000 0.00 0.00 42.87 4.75
1556 1672 1.303317 GTCAAAGATGGGTGGCCGT 60.303 57.895 0.00 0.00 0.00 5.68
1652 1768 1.668151 GAAGTCGTCTGGCACCACC 60.668 63.158 0.00 0.00 39.84 4.61
1706 1822 1.988107 TCCAGCAAAGAGATGAAGGGT 59.012 47.619 0.00 0.00 35.00 4.34
1730 1846 0.534203 TCGTCTTTTTGAGCGGCCTT 60.534 50.000 0.00 0.00 0.00 4.35
1783 1899 3.182887 AGTTGATCCTGTCTGAGAGGT 57.817 47.619 19.18 7.99 31.85 3.85
1825 1941 1.517257 GCTCACCTGATGACGTCGG 60.517 63.158 11.62 8.38 32.37 4.79
1865 1984 9.814899 CAACATAGGCAAATTTTAACATATGGA 57.185 29.630 7.80 0.00 0.00 3.41
1866 1985 9.598517 ACAACATAGGCAAATTTTAACATATGG 57.401 29.630 7.80 6.91 0.00 2.74
1870 1989 9.777297 AGAAACAACATAGGCAAATTTTAACAT 57.223 25.926 0.00 0.00 0.00 2.71
1874 1993 9.364989 GCATAGAAACAACATAGGCAAATTTTA 57.635 29.630 0.00 0.00 0.00 1.52
1875 1994 7.877097 TGCATAGAAACAACATAGGCAAATTTT 59.123 29.630 0.00 0.00 33.73 1.82
1876 1995 7.385267 TGCATAGAAACAACATAGGCAAATTT 58.615 30.769 0.00 0.00 33.73 1.82
1877 1996 6.934056 TGCATAGAAACAACATAGGCAAATT 58.066 32.000 0.00 0.00 33.73 1.82
1878 1997 6.528537 TGCATAGAAACAACATAGGCAAAT 57.471 33.333 0.00 0.00 33.73 2.32
1879 1998 5.973899 TGCATAGAAACAACATAGGCAAA 57.026 34.783 0.00 0.00 33.73 3.68
1880 1999 5.418524 ACATGCATAGAAACAACATAGGCAA 59.581 36.000 0.00 0.00 39.34 4.52
1881 2000 4.949238 ACATGCATAGAAACAACATAGGCA 59.051 37.500 0.00 0.00 40.08 4.75
1882 2001 5.066375 TGACATGCATAGAAACAACATAGGC 59.934 40.000 0.00 0.00 0.00 3.93
1883 2002 6.682423 TGACATGCATAGAAACAACATAGG 57.318 37.500 0.00 0.00 0.00 2.57
1884 2003 7.012610 TCCATGACATGCATAGAAACAACATAG 59.987 37.037 10.10 0.00 34.82 2.23
1924 2180 2.204237 CTGACCGATCGATCAAATGCA 58.796 47.619 24.40 13.09 0.00 3.96
2007 2272 0.899720 GGGTATGACCTTCCGTGTCA 59.100 55.000 0.00 0.00 45.98 3.58
2011 2276 0.612732 TGTCGGGTATGACCTTCCGT 60.613 55.000 0.00 0.00 42.71 4.69
2012 2277 0.102481 CTGTCGGGTATGACCTTCCG 59.898 60.000 0.00 0.00 43.42 4.30
2026 2291 1.467713 GGTACTTCGAAGAGGCTGTCG 60.468 57.143 31.08 10.20 36.98 4.35
2041 2306 1.798735 CATCACGACCGTCGGTACT 59.201 57.895 24.03 1.66 45.59 2.73
2131 2396 1.147600 GTACCCCGGCGATGGATTT 59.852 57.895 19.92 2.97 0.00 2.17
2154 2419 1.941294 GCTCAGAGAAGTGCATGATGG 59.059 52.381 0.00 0.00 0.00 3.51
2177 2442 1.133025 GGCGTTGAATGGAAGGACATG 59.867 52.381 0.00 0.00 0.00 3.21
2179 2444 0.109532 TGGCGTTGAATGGAAGGACA 59.890 50.000 0.00 0.00 0.00 4.02
2180 2445 1.463674 ATGGCGTTGAATGGAAGGAC 58.536 50.000 0.00 0.00 0.00 3.85
2210 2476 1.227999 ACGCCGTTGAGGTTGATGTG 61.228 55.000 0.00 0.00 43.70 3.21
2211 2477 1.070786 ACGCCGTTGAGGTTGATGT 59.929 52.632 0.00 0.00 43.70 3.06
2212 2478 1.227999 ACACGCCGTTGAGGTTGATG 61.228 55.000 0.00 0.00 43.70 3.07
2225 2491 1.400494 GTTTGGATACCATGACACGCC 59.600 52.381 0.00 0.00 31.53 5.68
2226 2492 2.080693 TGTTTGGATACCATGACACGC 58.919 47.619 0.00 0.00 31.53 5.34
2229 2495 3.745799 ACGTTGTTTGGATACCATGACA 58.254 40.909 0.00 0.00 31.53 3.58
2231 2497 3.008594 AGGACGTTGTTTGGATACCATGA 59.991 43.478 0.00 0.00 31.53 3.07
2237 2503 2.824936 TCGGTAGGACGTTGTTTGGATA 59.175 45.455 0.00 0.00 34.94 2.59
2239 2505 1.039068 TCGGTAGGACGTTGTTTGGA 58.961 50.000 0.00 0.00 34.94 3.53
2243 2509 3.259123 AGGTATTTCGGTAGGACGTTGTT 59.741 43.478 0.00 0.00 34.94 2.83
2252 2518 2.693591 TGCCAGAGAGGTATTTCGGTAG 59.306 50.000 0.00 0.00 40.61 3.18
2272 2538 3.812053 GGAAGCTATTGTAGATGGCTGTG 59.188 47.826 0.00 0.00 35.98 3.66
2273 2539 3.181450 GGGAAGCTATTGTAGATGGCTGT 60.181 47.826 0.00 0.00 35.98 4.40
2275 2541 2.373502 GGGGAAGCTATTGTAGATGGCT 59.626 50.000 0.00 0.00 37.45 4.75
2291 2557 1.978580 GTGACTCTTCAAGGAGGGGAA 59.021 52.381 0.00 0.00 37.63 3.97
2301 2567 4.832823 TGGAGATGTTGTAGTGACTCTTCA 59.167 41.667 0.00 0.00 0.00 3.02
2308 2574 4.445453 GCATGATGGAGATGTTGTAGTGA 58.555 43.478 0.00 0.00 0.00 3.41
2310 2576 3.434167 GGGCATGATGGAGATGTTGTAGT 60.434 47.826 0.00 0.00 0.00 2.73
2315 2581 1.410648 GGTGGGCATGATGGAGATGTT 60.411 52.381 0.00 0.00 0.00 2.71
2320 2586 2.903855 GCGGTGGGCATGATGGAG 60.904 66.667 0.00 0.00 42.87 3.86
2329 2595 1.090052 GTGTTGATCTAGCGGTGGGC 61.090 60.000 0.00 0.00 44.05 5.36
2337 2603 2.386661 AGGCGGTTGTGTTGATCTAG 57.613 50.000 0.00 0.00 0.00 2.43
2338 2604 3.449377 TGATAGGCGGTTGTGTTGATCTA 59.551 43.478 0.00 0.00 0.00 1.98
2347 2613 1.949525 GCATTGATGATAGGCGGTTGT 59.050 47.619 0.00 0.00 0.00 3.32
2376 2642 2.166870 GTGGTGGTGATGACCGTGTATA 59.833 50.000 0.00 0.00 46.62 1.47
2377 2643 1.066430 GTGGTGGTGATGACCGTGTAT 60.066 52.381 0.00 0.00 46.62 2.29
2383 2649 0.893727 GGTTGGTGGTGGTGATGACC 60.894 60.000 0.00 0.00 43.48 4.02
2387 2653 0.178964 CCAAGGTTGGTGGTGGTGAT 60.179 55.000 0.09 0.00 43.43 3.06
2417 2683 5.220340 CGTCTGAATAAAACGTACCATCCAC 60.220 44.000 0.00 0.00 0.00 4.02
2458 2724 3.006003 GTGTGCCCCCTTTTATCGAAAAA 59.994 43.478 0.00 0.00 34.16 1.94
2459 2725 2.559231 GTGTGCCCCCTTTTATCGAAAA 59.441 45.455 0.00 0.00 33.48 2.29
2460 2726 2.164338 GTGTGCCCCCTTTTATCGAAA 58.836 47.619 0.00 0.00 0.00 3.46
2461 2727 1.074084 TGTGTGCCCCCTTTTATCGAA 59.926 47.619 0.00 0.00 0.00 3.71
2462 2728 0.693622 TGTGTGCCCCCTTTTATCGA 59.306 50.000 0.00 0.00 0.00 3.59
2463 2729 0.808755 GTGTGTGCCCCCTTTTATCG 59.191 55.000 0.00 0.00 0.00 2.92
2464 2730 1.182667 GGTGTGTGCCCCCTTTTATC 58.817 55.000 0.00 0.00 0.00 1.75
2465 2731 0.610785 CGGTGTGTGCCCCCTTTTAT 60.611 55.000 0.00 0.00 0.00 1.40
2466 2732 1.228306 CGGTGTGTGCCCCCTTTTA 60.228 57.895 0.00 0.00 0.00 1.52
2467 2733 2.520741 CGGTGTGTGCCCCCTTTT 60.521 61.111 0.00 0.00 0.00 2.27
2475 2741 1.372872 GAAAATGGGCGGTGTGTGC 60.373 57.895 0.00 0.00 0.00 4.57
2476 2742 0.602562 ATGAAAATGGGCGGTGTGTG 59.397 50.000 0.00 0.00 0.00 3.82
2477 2743 1.000731 CAATGAAAATGGGCGGTGTGT 59.999 47.619 0.00 0.00 0.00 3.72
2478 2744 1.712401 CAATGAAAATGGGCGGTGTG 58.288 50.000 0.00 0.00 0.00 3.82
2479 2745 0.037419 GCAATGAAAATGGGCGGTGT 60.037 50.000 0.00 0.00 0.00 4.16
2480 2746 1.077645 CGCAATGAAAATGGGCGGTG 61.078 55.000 0.00 0.00 43.63 4.94
2481 2747 1.215117 CGCAATGAAAATGGGCGGT 59.785 52.632 0.00 0.00 43.63 5.68
2482 2748 0.108898 TTCGCAATGAAAATGGGCGG 60.109 50.000 0.00 0.00 46.95 6.13
2483 2749 1.707632 TTTCGCAATGAAAATGGGCG 58.292 45.000 0.00 0.00 43.46 6.13
2490 2756 4.321156 CCAGACTCCATTTTCGCAATGAAA 60.321 41.667 8.33 0.00 44.70 2.69
2491 2757 3.191162 CCAGACTCCATTTTCGCAATGAA 59.809 43.478 8.33 0.00 33.85 2.57
2492 2758 2.749076 CCAGACTCCATTTTCGCAATGA 59.251 45.455 8.33 0.00 0.00 2.57
2493 2759 2.159338 CCCAGACTCCATTTTCGCAATG 60.159 50.000 1.24 1.24 0.00 2.82
2494 2760 2.094675 CCCAGACTCCATTTTCGCAAT 58.905 47.619 0.00 0.00 0.00 3.56
2495 2761 1.073125 TCCCAGACTCCATTTTCGCAA 59.927 47.619 0.00 0.00 0.00 4.85
2496 2762 0.690192 TCCCAGACTCCATTTTCGCA 59.310 50.000 0.00 0.00 0.00 5.10
2497 2763 2.044123 ATCCCAGACTCCATTTTCGC 57.956 50.000 0.00 0.00 0.00 4.70
2498 2764 4.137116 TGTATCCCAGACTCCATTTTCG 57.863 45.455 0.00 0.00 0.00 3.46
2499 2765 5.529060 GTGATGTATCCCAGACTCCATTTTC 59.471 44.000 0.00 0.00 0.00 2.29
2500 2766 5.192522 AGTGATGTATCCCAGACTCCATTTT 59.807 40.000 0.00 0.00 0.00 1.82
2501 2767 4.723789 AGTGATGTATCCCAGACTCCATTT 59.276 41.667 0.00 0.00 0.00 2.32
2502 2768 4.302067 AGTGATGTATCCCAGACTCCATT 58.698 43.478 0.00 0.00 0.00 3.16
2503 2769 3.933886 AGTGATGTATCCCAGACTCCAT 58.066 45.455 0.00 0.00 0.00 3.41
2504 2770 3.404869 AGTGATGTATCCCAGACTCCA 57.595 47.619 0.00 0.00 0.00 3.86
2505 2771 3.452627 ACAAGTGATGTATCCCAGACTCC 59.547 47.826 0.00 0.00 41.63 3.85
2506 2772 4.744795 ACAAGTGATGTATCCCAGACTC 57.255 45.455 0.00 0.00 41.63 3.36
2507 2773 5.505181 AAACAAGTGATGTATCCCAGACT 57.495 39.130 0.00 0.00 42.99 3.24
2508 2774 5.705441 TCAAAACAAGTGATGTATCCCAGAC 59.295 40.000 0.00 0.00 42.99 3.51
2509 2775 5.875224 TCAAAACAAGTGATGTATCCCAGA 58.125 37.500 0.00 0.00 42.99 3.86
2510 2776 6.573664 TTCAAAACAAGTGATGTATCCCAG 57.426 37.500 0.00 0.00 42.99 4.45
2511 2777 6.968263 TTTCAAAACAAGTGATGTATCCCA 57.032 33.333 0.00 0.00 42.99 4.37
2512 2778 8.831715 AATTTTCAAAACAAGTGATGTATCCC 57.168 30.769 0.00 0.00 42.99 3.85
2516 2782 9.645059 TGTCAAATTTTCAAAACAAGTGATGTA 57.355 25.926 0.00 0.00 42.99 2.29
2517 2783 8.545229 TGTCAAATTTTCAAAACAAGTGATGT 57.455 26.923 0.00 0.00 46.82 3.06
2518 2784 8.117988 CCTGTCAAATTTTCAAAACAAGTGATG 58.882 33.333 0.00 0.00 0.00 3.07
2519 2785 8.040132 TCCTGTCAAATTTTCAAAACAAGTGAT 58.960 29.630 0.00 0.00 0.00 3.06
2520 2786 7.382110 TCCTGTCAAATTTTCAAAACAAGTGA 58.618 30.769 0.00 0.00 0.00 3.41
2521 2787 7.593875 TCCTGTCAAATTTTCAAAACAAGTG 57.406 32.000 0.00 0.00 0.00 3.16
2522 2788 6.313658 GCTCCTGTCAAATTTTCAAAACAAGT 59.686 34.615 0.00 0.00 0.00 3.16
2523 2789 6.536224 AGCTCCTGTCAAATTTTCAAAACAAG 59.464 34.615 0.00 0.00 0.00 3.16
2524 2790 6.405538 AGCTCCTGTCAAATTTTCAAAACAA 58.594 32.000 0.00 0.00 0.00 2.83
2525 2791 5.976458 AGCTCCTGTCAAATTTTCAAAACA 58.024 33.333 0.00 0.00 0.00 2.83
2526 2792 6.199719 CAGAGCTCCTGTCAAATTTTCAAAAC 59.800 38.462 10.93 0.00 38.10 2.43
2527 2793 6.275335 CAGAGCTCCTGTCAAATTTTCAAAA 58.725 36.000 10.93 0.00 38.10 2.44
2528 2794 5.835257 CAGAGCTCCTGTCAAATTTTCAAA 58.165 37.500 10.93 0.00 38.10 2.69
2529 2795 5.443185 CAGAGCTCCTGTCAAATTTTCAA 57.557 39.130 10.93 0.00 38.10 2.69
2542 2808 3.902881 AATCGAAATGACAGAGCTCCT 57.097 42.857 10.93 0.00 0.00 3.69
2543 2809 4.938080 TCTAATCGAAATGACAGAGCTCC 58.062 43.478 10.93 0.00 0.00 4.70
2544 2810 6.269315 TCTTCTAATCGAAATGACAGAGCTC 58.731 40.000 5.27 5.27 0.00 4.09
2545 2811 6.214191 TCTTCTAATCGAAATGACAGAGCT 57.786 37.500 0.00 0.00 0.00 4.09
2546 2812 6.754209 TCTTCTTCTAATCGAAATGACAGAGC 59.246 38.462 0.00 0.00 0.00 4.09
2547 2813 8.187480 TCTCTTCTTCTAATCGAAATGACAGAG 58.813 37.037 0.00 0.00 0.00 3.35
2548 2814 8.056407 TCTCTTCTTCTAATCGAAATGACAGA 57.944 34.615 0.00 0.00 0.00 3.41
2549 2815 8.870160 ATCTCTTCTTCTAATCGAAATGACAG 57.130 34.615 0.00 0.00 0.00 3.51
2550 2816 9.658799 AAATCTCTTCTTCTAATCGAAATGACA 57.341 29.630 0.00 0.00 0.00 3.58
2563 2829 8.543774 TGGCTATGAACTTAAATCTCTTCTTCT 58.456 33.333 0.00 0.00 0.00 2.85
2564 2830 8.723942 TGGCTATGAACTTAAATCTCTTCTTC 57.276 34.615 0.00 0.00 0.00 2.87
2565 2831 9.171877 CTTGGCTATGAACTTAAATCTCTTCTT 57.828 33.333 0.00 0.00 0.00 2.52
2566 2832 7.281999 GCTTGGCTATGAACTTAAATCTCTTCT 59.718 37.037 0.00 0.00 0.00 2.85
2567 2833 7.066284 TGCTTGGCTATGAACTTAAATCTCTTC 59.934 37.037 0.00 0.00 0.00 2.87
2568 2834 6.886459 TGCTTGGCTATGAACTTAAATCTCTT 59.114 34.615 0.00 0.00 0.00 2.85
2569 2835 6.418101 TGCTTGGCTATGAACTTAAATCTCT 58.582 36.000 0.00 0.00 0.00 3.10
2570 2836 6.683974 TGCTTGGCTATGAACTTAAATCTC 57.316 37.500 0.00 0.00 0.00 2.75
2571 2837 7.651027 ATTGCTTGGCTATGAACTTAAATCT 57.349 32.000 0.00 0.00 0.00 2.40
2572 2838 9.971922 AATATTGCTTGGCTATGAACTTAAATC 57.028 29.630 0.00 0.00 0.00 2.17
2576 2842 9.402320 TGTTAATATTGCTTGGCTATGAACTTA 57.598 29.630 0.00 0.00 0.00 2.24
2577 2843 8.190784 GTGTTAATATTGCTTGGCTATGAACTT 58.809 33.333 0.00 0.00 0.00 2.66
2578 2844 7.557719 AGTGTTAATATTGCTTGGCTATGAACT 59.442 33.333 0.00 0.00 0.00 3.01
2579 2845 7.707104 AGTGTTAATATTGCTTGGCTATGAAC 58.293 34.615 0.00 0.00 0.00 3.18
2580 2846 7.880160 AGTGTTAATATTGCTTGGCTATGAA 57.120 32.000 0.00 0.00 0.00 2.57
2581 2847 7.661437 CCTAGTGTTAATATTGCTTGGCTATGA 59.339 37.037 0.00 0.00 0.00 2.15
2582 2848 7.573843 GCCTAGTGTTAATATTGCTTGGCTATG 60.574 40.741 18.87 6.80 42.07 2.23
2583 2849 6.431234 GCCTAGTGTTAATATTGCTTGGCTAT 59.569 38.462 18.87 0.00 42.07 2.97
2584 2850 5.763204 GCCTAGTGTTAATATTGCTTGGCTA 59.237 40.000 18.87 7.30 42.07 3.93
2585 2851 4.580580 GCCTAGTGTTAATATTGCTTGGCT 59.419 41.667 18.87 6.76 42.07 4.75
2586 2852 4.580580 AGCCTAGTGTTAATATTGCTTGGC 59.419 41.667 18.68 18.68 44.34 4.52
2587 2853 6.699575 AAGCCTAGTGTTAATATTGCTTGG 57.300 37.500 0.00 3.42 36.54 3.61
2588 2854 6.473455 GCAAAGCCTAGTGTTAATATTGCTTG 59.527 38.462 0.00 0.00 37.81 4.01
2589 2855 6.405842 GGCAAAGCCTAGTGTTAATATTGCTT 60.406 38.462 0.00 0.00 46.69 3.91
2590 2856 5.067805 GGCAAAGCCTAGTGTTAATATTGCT 59.932 40.000 0.00 0.00 46.69 3.91
2591 2857 5.281727 GGCAAAGCCTAGTGTTAATATTGC 58.718 41.667 0.00 0.00 46.69 3.56
2607 2873 3.674410 GCTGATTTTCACCTAGGCAAAGC 60.674 47.826 9.30 9.17 0.00 3.51
2608 2874 3.119352 GGCTGATTTTCACCTAGGCAAAG 60.119 47.826 9.30 0.00 34.47 2.77
2609 2875 2.825532 GGCTGATTTTCACCTAGGCAAA 59.174 45.455 9.30 5.49 34.47 3.68
2610 2876 2.446435 GGCTGATTTTCACCTAGGCAA 58.554 47.619 9.30 0.00 34.47 4.52
2611 2877 1.340991 GGGCTGATTTTCACCTAGGCA 60.341 52.381 9.30 0.00 35.85 4.75
2612 2878 1.393603 GGGCTGATTTTCACCTAGGC 58.606 55.000 9.30 0.00 0.00 3.93
2613 2879 1.410224 GGGGGCTGATTTTCACCTAGG 60.410 57.143 7.41 7.41 0.00 3.02
2614 2880 1.566231 AGGGGGCTGATTTTCACCTAG 59.434 52.381 0.00 0.00 0.00 3.02
2615 2881 1.681229 AGGGGGCTGATTTTCACCTA 58.319 50.000 0.00 0.00 0.00 3.08
2616 2882 0.786435 AAGGGGGCTGATTTTCACCT 59.214 50.000 0.00 0.00 0.00 4.00
2617 2883 1.186200 GAAGGGGGCTGATTTTCACC 58.814 55.000 0.00 0.00 0.00 4.02
2618 2884 1.923356 TGAAGGGGGCTGATTTTCAC 58.077 50.000 0.00 0.00 0.00 3.18
2619 2885 2.624029 GGATGAAGGGGGCTGATTTTCA 60.624 50.000 0.00 0.00 32.90 2.69
2620 2886 2.034878 GGATGAAGGGGGCTGATTTTC 58.965 52.381 0.00 0.00 0.00 2.29
2621 2887 1.648037 AGGATGAAGGGGGCTGATTTT 59.352 47.619 0.00 0.00 0.00 1.82
2622 2888 1.312884 AGGATGAAGGGGGCTGATTT 58.687 50.000 0.00 0.00 0.00 2.17
2623 2889 2.212752 TAGGATGAAGGGGGCTGATT 57.787 50.000 0.00 0.00 0.00 2.57
2624 2890 2.175715 GTTTAGGATGAAGGGGGCTGAT 59.824 50.000 0.00 0.00 0.00 2.90
2625 2891 1.564348 GTTTAGGATGAAGGGGGCTGA 59.436 52.381 0.00 0.00 0.00 4.26
2626 2892 1.284785 TGTTTAGGATGAAGGGGGCTG 59.715 52.381 0.00 0.00 0.00 4.85
2627 2893 1.681229 TGTTTAGGATGAAGGGGGCT 58.319 50.000 0.00 0.00 0.00 5.19
2628 2894 2.100197 GTTGTTTAGGATGAAGGGGGC 58.900 52.381 0.00 0.00 0.00 5.80
2629 2895 3.267031 AGAGTTGTTTAGGATGAAGGGGG 59.733 47.826 0.00 0.00 0.00 5.40
2630 2896 4.576330 AGAGTTGTTTAGGATGAAGGGG 57.424 45.455 0.00 0.00 0.00 4.79
2631 2897 6.889198 TCATAGAGTTGTTTAGGATGAAGGG 58.111 40.000 0.00 0.00 0.00 3.95
2632 2898 8.792830 TTTCATAGAGTTGTTTAGGATGAAGG 57.207 34.615 0.00 0.00 34.37 3.46
2638 2904 9.120538 GCCATAATTTCATAGAGTTGTTTAGGA 57.879 33.333 0.00 0.00 0.00 2.94
2639 2905 9.125026 AGCCATAATTTCATAGAGTTGTTTAGG 57.875 33.333 0.00 0.00 0.00 2.69
2640 2906 9.941664 CAGCCATAATTTCATAGAGTTGTTTAG 57.058 33.333 0.00 0.00 0.00 1.85
2641 2907 8.405531 GCAGCCATAATTTCATAGAGTTGTTTA 58.594 33.333 0.00 0.00 0.00 2.01
2642 2908 7.093814 TGCAGCCATAATTTCATAGAGTTGTTT 60.094 33.333 0.00 0.00 0.00 2.83
2643 2909 6.377996 TGCAGCCATAATTTCATAGAGTTGTT 59.622 34.615 0.00 0.00 0.00 2.83
2644 2910 5.887598 TGCAGCCATAATTTCATAGAGTTGT 59.112 36.000 0.00 0.00 0.00 3.32
2645 2911 6.381481 TGCAGCCATAATTTCATAGAGTTG 57.619 37.500 0.00 0.00 0.00 3.16
2646 2912 6.516194 GCATGCAGCCATAATTTCATAGAGTT 60.516 38.462 14.21 0.00 37.23 3.01
2647 2913 5.048224 GCATGCAGCCATAATTTCATAGAGT 60.048 40.000 14.21 0.00 37.23 3.24
2648 2914 5.048294 TGCATGCAGCCATAATTTCATAGAG 60.048 40.000 18.46 0.00 44.83 2.43
2649 2915 4.828387 TGCATGCAGCCATAATTTCATAGA 59.172 37.500 18.46 0.00 44.83 1.98
2650 2916 5.128992 TGCATGCAGCCATAATTTCATAG 57.871 39.130 18.46 0.00 44.83 2.23
2651 2917 5.620429 CGATGCATGCAGCCATAATTTCATA 60.620 40.000 28.76 0.00 44.83 2.15
2652 2918 4.566004 GATGCATGCAGCCATAATTTCAT 58.434 39.130 25.21 2.61 44.83 2.57
2653 2919 3.551250 CGATGCATGCAGCCATAATTTCA 60.551 43.478 28.76 0.00 44.83 2.69
2654 2920 2.984471 CGATGCATGCAGCCATAATTTC 59.016 45.455 28.76 15.18 44.83 2.17
2655 2921 2.624364 TCGATGCATGCAGCCATAATTT 59.376 40.909 28.76 7.39 44.83 1.82
2656 2922 2.232399 TCGATGCATGCAGCCATAATT 58.768 42.857 28.76 8.20 44.83 1.40
2657 2923 1.900245 TCGATGCATGCAGCCATAAT 58.100 45.000 28.76 9.02 44.83 1.28
2658 2924 1.900245 ATCGATGCATGCAGCCATAA 58.100 45.000 28.76 13.15 44.83 1.90
2659 2925 1.538075 CAATCGATGCATGCAGCCATA 59.462 47.619 28.76 15.64 44.83 2.74
2660 2926 0.313987 CAATCGATGCATGCAGCCAT 59.686 50.000 28.76 20.10 44.83 4.40
2661 2927 0.748729 TCAATCGATGCATGCAGCCA 60.749 50.000 28.76 18.55 44.83 4.75
2662 2928 0.596577 ATCAATCGATGCATGCAGCC 59.403 50.000 28.76 19.54 44.83 4.85
2663 2929 1.686464 CATCAATCGATGCATGCAGC 58.314 50.000 25.69 25.69 42.54 5.25
2672 2938 0.602106 CGGCCTCTGCATCAATCGAT 60.602 55.000 0.00 0.00 40.13 3.59
2673 2939 1.227350 CGGCCTCTGCATCAATCGA 60.227 57.895 0.00 0.00 40.13 3.59
2674 2940 2.249535 CCGGCCTCTGCATCAATCG 61.250 63.158 0.00 0.00 40.13 3.34
2675 2941 1.895707 CCCGGCCTCTGCATCAATC 60.896 63.158 0.00 0.00 40.13 2.67
2676 2942 2.194056 CCCGGCCTCTGCATCAAT 59.806 61.111 0.00 0.00 40.13 2.57
2677 2943 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
2683 2949 4.803908 GGAAAGCCCCGGCCTCTG 62.804 72.222 0.00 0.00 43.17 3.35
2685 2951 1.996070 ATAAGGAAAGCCCCGGCCTC 61.996 60.000 0.00 0.00 43.17 4.70
2686 2952 1.580994 AATAAGGAAAGCCCCGGCCT 61.581 55.000 0.00 0.00 43.17 5.19
2687 2953 0.184211 TAATAAGGAAAGCCCCGGCC 59.816 55.000 1.02 0.00 43.17 6.13
2688 2954 2.061509 TTAATAAGGAAAGCCCCGGC 57.938 50.000 0.00 0.00 42.33 6.13
2709 2975 7.990886 TCTACCAGTGTTCATAGAGTTGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
2710 2976 7.506114 TCTACCAGTGTTCATAGAGTTGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
2711 2977 7.062749 TCTACCAGTGTTCATAGAGTTGTTT 57.937 36.000 0.00 0.00 0.00 2.83
2712 2978 6.665992 TCTACCAGTGTTCATAGAGTTGTT 57.334 37.500 0.00 0.00 0.00 2.83
2713 2979 6.665992 TTCTACCAGTGTTCATAGAGTTGT 57.334 37.500 0.00 0.00 0.00 3.32
2714 2980 7.962964 TTTTCTACCAGTGTTCATAGAGTTG 57.037 36.000 0.00 0.00 0.00 3.16
2736 3002 1.146359 ACCGGGACTAAAGGGCTTTTT 59.854 47.619 6.32 0.00 34.23 1.94
2737 3003 0.775542 ACCGGGACTAAAGGGCTTTT 59.224 50.000 6.32 0.00 34.23 2.27
2738 3004 0.775542 AACCGGGACTAAAGGGCTTT 59.224 50.000 6.32 0.00 36.63 3.51
2739 3005 0.327259 GAACCGGGACTAAAGGGCTT 59.673 55.000 6.32 0.00 0.00 4.35
2740 3006 1.896122 CGAACCGGGACTAAAGGGCT 61.896 60.000 6.32 0.00 0.00 5.19
2741 3007 1.449070 CGAACCGGGACTAAAGGGC 60.449 63.158 6.32 0.00 0.00 5.19
2742 3008 1.449070 GCGAACCGGGACTAAAGGG 60.449 63.158 6.32 0.00 0.00 3.95
2743 3009 0.320946 TTGCGAACCGGGACTAAAGG 60.321 55.000 6.32 0.00 0.00 3.11
2744 3010 1.463444 CTTTGCGAACCGGGACTAAAG 59.537 52.381 6.32 6.26 0.00 1.85
2745 3011 1.515081 CTTTGCGAACCGGGACTAAA 58.485 50.000 6.32 0.00 0.00 1.85
2746 3012 0.320946 CCTTTGCGAACCGGGACTAA 60.321 55.000 6.32 0.00 0.00 2.24
2747 3013 1.294138 CCTTTGCGAACCGGGACTA 59.706 57.895 6.32 0.00 0.00 2.59
2748 3014 2.032071 CCTTTGCGAACCGGGACT 59.968 61.111 6.32 0.00 0.00 3.85
2749 3015 3.733960 GCCTTTGCGAACCGGGAC 61.734 66.667 6.32 0.00 0.00 4.46
2752 3018 1.238625 TAAAGGCCTTTGCGAACCGG 61.239 55.000 35.99 0.00 38.85 5.28
2753 3019 0.168128 CTAAAGGCCTTTGCGAACCG 59.832 55.000 35.99 14.04 38.85 4.44
2754 3020 1.199327 GACTAAAGGCCTTTGCGAACC 59.801 52.381 35.99 17.08 38.85 3.62
2755 3021 1.199327 GGACTAAAGGCCTTTGCGAAC 59.801 52.381 35.99 23.16 38.85 3.95
2756 3022 1.530323 GGACTAAAGGCCTTTGCGAA 58.470 50.000 35.99 18.29 38.85 4.70
2757 3023 0.322187 GGGACTAAAGGCCTTTGCGA 60.322 55.000 35.99 18.65 38.85 5.10
2758 3024 1.644786 CGGGACTAAAGGCCTTTGCG 61.645 60.000 35.99 27.79 38.85 4.85
2759 3025 1.313091 CCGGGACTAAAGGCCTTTGC 61.313 60.000 35.99 24.64 34.23 3.68
2760 3026 1.313091 GCCGGGACTAAAGGCCTTTG 61.313 60.000 35.99 26.94 44.80 2.77
2761 3027 1.001269 GCCGGGACTAAAGGCCTTT 60.001 57.895 32.37 32.37 44.80 3.11
2762 3028 2.675371 GCCGGGACTAAAGGCCTT 59.325 61.111 13.78 13.78 44.80 4.35
2766 3032 1.745489 GCACAGCCGGGACTAAAGG 60.745 63.158 2.18 0.00 0.00 3.11
2767 3033 0.605319 TTGCACAGCCGGGACTAAAG 60.605 55.000 2.18 0.00 0.00 1.85
2768 3034 0.887387 GTTGCACAGCCGGGACTAAA 60.887 55.000 2.18 0.00 0.00 1.85
2769 3035 1.302192 GTTGCACAGCCGGGACTAA 60.302 57.895 2.18 0.00 0.00 2.24
2770 3036 2.345991 GTTGCACAGCCGGGACTA 59.654 61.111 2.18 0.00 0.00 2.59
2771 3037 4.643387 GGTTGCACAGCCGGGACT 62.643 66.667 2.18 0.00 0.00 3.85
2777 3043 2.741486 TTAGTCCCGGTTGCACAGCC 62.741 60.000 0.00 0.00 0.00 4.85
2778 3044 0.887387 TTTAGTCCCGGTTGCACAGC 60.887 55.000 0.00 0.00 0.00 4.40
2779 3045 1.821216 ATTTAGTCCCGGTTGCACAG 58.179 50.000 0.00 0.00 0.00 3.66
2780 3046 3.275143 CATATTTAGTCCCGGTTGCACA 58.725 45.455 0.00 0.00 0.00 4.57
2781 3047 2.032924 GCATATTTAGTCCCGGTTGCAC 59.967 50.000 0.00 0.00 0.00 4.57
2782 3048 2.294074 GCATATTTAGTCCCGGTTGCA 58.706 47.619 0.00 0.00 0.00 4.08
2783 3049 1.263217 CGCATATTTAGTCCCGGTTGC 59.737 52.381 0.00 0.00 0.00 4.17
2784 3050 1.263217 GCGCATATTTAGTCCCGGTTG 59.737 52.381 0.30 0.00 0.00 3.77
2785 3051 1.589803 GCGCATATTTAGTCCCGGTT 58.410 50.000 0.30 0.00 0.00 4.44
2786 3052 0.599204 CGCGCATATTTAGTCCCGGT 60.599 55.000 8.75 0.00 0.00 5.28
2787 3053 0.319211 TCGCGCATATTTAGTCCCGG 60.319 55.000 8.75 0.00 0.00 5.73
2788 3054 0.782384 GTCGCGCATATTTAGTCCCG 59.218 55.000 8.75 0.00 0.00 5.14
2789 3055 2.150397 AGTCGCGCATATTTAGTCCC 57.850 50.000 8.75 0.00 0.00 4.46
2790 3056 4.980434 TCTTTAGTCGCGCATATTTAGTCC 59.020 41.667 8.75 0.00 0.00 3.85
2791 3057 5.107951 GGTCTTTAGTCGCGCATATTTAGTC 60.108 44.000 8.75 0.00 0.00 2.59
2792 3058 4.743644 GGTCTTTAGTCGCGCATATTTAGT 59.256 41.667 8.75 0.00 0.00 2.24
2793 3059 4.150098 GGGTCTTTAGTCGCGCATATTTAG 59.850 45.833 8.75 0.00 0.00 1.85
2794 3060 4.053295 GGGTCTTTAGTCGCGCATATTTA 58.947 43.478 8.75 0.00 0.00 1.40
2795 3061 2.870411 GGGTCTTTAGTCGCGCATATTT 59.130 45.455 8.75 0.00 0.00 1.40
2796 3062 2.480845 GGGTCTTTAGTCGCGCATATT 58.519 47.619 8.75 0.00 0.00 1.28
2797 3063 1.270147 GGGGTCTTTAGTCGCGCATAT 60.270 52.381 8.75 0.00 0.00 1.78
2798 3064 0.103572 GGGGTCTTTAGTCGCGCATA 59.896 55.000 8.75 0.00 0.00 3.14
2799 3065 1.153429 GGGGTCTTTAGTCGCGCAT 60.153 57.895 8.75 0.00 0.00 4.73
2800 3066 2.263540 GGGGTCTTTAGTCGCGCA 59.736 61.111 8.75 0.00 0.00 6.09
2801 3067 2.510918 GGGGGTCTTTAGTCGCGC 60.511 66.667 0.00 0.00 0.00 6.86
2821 3087 4.222847 GAGGCGCGACTAAGGGGG 62.223 72.222 18.29 0.00 0.00 5.40
2822 3088 1.389609 TAAGAGGCGCGACTAAGGGG 61.390 60.000 18.29 0.00 0.00 4.79
2823 3089 0.248949 GTAAGAGGCGCGACTAAGGG 60.249 60.000 18.29 0.00 0.00 3.95
2824 3090 0.591741 CGTAAGAGGCGCGACTAAGG 60.592 60.000 18.29 5.49 43.02 2.69
2825 3091 0.376152 TCGTAAGAGGCGCGACTAAG 59.624 55.000 18.29 0.89 45.01 2.18
2826 3092 2.470156 TCGTAAGAGGCGCGACTAA 58.530 52.632 18.29 0.00 45.01 2.24
2827 3093 4.206958 TCGTAAGAGGCGCGACTA 57.793 55.556 18.29 0.00 45.01 2.59
2838 3104 1.916000 CCTTTAGTCGCGGTTCGTAAG 59.084 52.381 6.13 3.09 39.67 2.34
2839 3105 1.981254 CCTTTAGTCGCGGTTCGTAA 58.019 50.000 6.13 0.00 39.67 3.18
2840 3106 0.456653 GCCTTTAGTCGCGGTTCGTA 60.457 55.000 6.13 0.00 39.67 3.43
2841 3107 1.735559 GCCTTTAGTCGCGGTTCGT 60.736 57.895 6.13 0.00 39.67 3.85
2842 3108 1.012486 AAGCCTTTAGTCGCGGTTCG 61.012 55.000 6.13 0.00 40.15 3.95
2843 3109 1.154197 AAAGCCTTTAGTCGCGGTTC 58.846 50.000 6.13 0.00 0.00 3.62
2844 3110 2.344025 CTAAAGCCTTTAGTCGCGGTT 58.656 47.619 14.78 0.00 38.21 4.44
2845 3111 2.005971 CTAAAGCCTTTAGTCGCGGT 57.994 50.000 14.78 0.00 38.21 5.68
3374 3640 5.335661 GCATACCCGAGATTGAAACTTGTTT 60.336 40.000 0.00 0.00 0.00 2.83
3498 3764 2.462723 GAGGAGGCTTAGTCCAGAAGT 58.537 52.381 0.00 0.00 36.43 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.