Multiple sequence alignment - TraesCS1D01G345600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G345600 chr1D 100.000 4730 0 0 362 5091 433515691 433520420 0.000000e+00 8735.0
1 TraesCS1D01G345600 chr1D 86.080 2263 264 32 1276 3513 452342103 452344339 0.000000e+00 2386.0
2 TraesCS1D01G345600 chr1D 85.417 288 42 0 3873 4160 452344870 452345157 2.980000e-77 300.0
3 TraesCS1D01G345600 chr1D 100.000 116 0 0 1 116 433515330 433515445 1.110000e-51 215.0
4 TraesCS1D01G345600 chr1D 93.333 45 3 0 625 669 417312567 417312611 3.290000e-07 67.6
5 TraesCS1D01G345600 chr1B 95.047 2322 84 11 1220 3531 585882293 585884593 0.000000e+00 3622.0
6 TraesCS1D01G345600 chr1B 86.448 2258 255 33 1281 3513 622187069 622184838 0.000000e+00 2427.0
7 TraesCS1D01G345600 chr1B 95.064 466 20 2 3737 4200 585884620 585885084 0.000000e+00 730.0
8 TraesCS1D01G345600 chr1B 93.750 480 11 6 362 837 585880978 585881442 0.000000e+00 702.0
9 TraesCS1D01G345600 chr1B 93.199 397 18 6 837 1224 585881783 585882179 4.420000e-160 575.0
10 TraesCS1D01G345600 chr1B 88.636 484 33 7 4216 4696 585885503 585885967 2.060000e-158 569.0
11 TraesCS1D01G345600 chr1B 85.606 264 38 0 3872 4135 622184468 622184205 1.400000e-70 278.0
12 TraesCS1D01G345600 chr1B 96.460 113 4 0 1 113 585880804 585880916 2.420000e-43 187.0
13 TraesCS1D01G345600 chr1B 95.556 45 2 0 625 669 532493213 532493257 7.070000e-09 73.1
14 TraesCS1D01G345600 chr1A 95.760 2052 57 14 1492 3536 532103533 532105561 0.000000e+00 3280.0
15 TraesCS1D01G345600 chr1A 86.241 2253 260 31 1281 3513 547255147 547257369 0.000000e+00 2398.0
16 TraesCS1D01G345600 chr1A 92.717 865 32 6 362 1224 532101812 532102647 0.000000e+00 1219.0
17 TraesCS1D01G345600 chr1A 95.329 471 12 7 3734 4200 532105572 532106036 0.000000e+00 739.0
18 TraesCS1D01G345600 chr1A 92.606 284 19 2 1220 1502 532102761 532103043 1.710000e-109 407.0
19 TraesCS1D01G345600 chr1A 79.932 588 61 31 4334 4897 532106506 532107060 3.720000e-101 379.0
20 TraesCS1D01G345600 chr1A 78.770 504 95 10 4592 5089 12427187 12427684 1.370000e-85 327.0
21 TraesCS1D01G345600 chr1A 78.107 507 90 18 4595 5090 423988402 423987906 8.280000e-78 302.0
22 TraesCS1D01G345600 chr1A 79.560 455 58 20 3707 4160 547257605 547258025 4.990000e-75 292.0
23 TraesCS1D01G345600 chr1A 95.690 116 2 1 1 113 532101635 532101750 3.130000e-42 183.0
24 TraesCS1D01G345600 chr1A 91.791 134 6 3 711 844 575506104 575505976 1.130000e-41 182.0
25 TraesCS1D01G345600 chr1A 91.538 130 7 3 4220 4349 532106366 532106491 5.240000e-40 176.0
26 TraesCS1D01G345600 chr3D 86.378 2217 258 29 1281 3480 178535678 178533489 0.000000e+00 2381.0
27 TraesCS1D01G345600 chr3D 85.813 289 33 3 3872 4160 178533078 178532798 2.980000e-77 300.0
28 TraesCS1D01G345600 chr3D 86.916 214 23 3 429 640 522946888 522946678 8.520000e-58 235.0
29 TraesCS1D01G345600 chr3B 85.771 2256 266 41 1281 3503 256786815 256784582 0.000000e+00 2337.0
30 TraesCS1D01G345600 chr3B 80.260 461 81 9 4592 5050 790644782 790644330 6.310000e-89 339.0
31 TraesCS1D01G345600 chr3B 83.283 329 43 7 3872 4200 256784134 256783818 4.990000e-75 292.0
32 TraesCS1D01G345600 chr3B 83.713 307 33 6 363 669 436704174 436704463 1.810000e-69 274.0
33 TraesCS1D01G345600 chr3B 91.791 134 6 3 711 844 754225284 754225412 1.130000e-41 182.0
34 TraesCS1D01G345600 chr3A 85.695 2251 262 41 1281 3494 219800777 219798550 0.000000e+00 2318.0
35 TraesCS1D01G345600 chr3A 79.400 500 95 7 4595 5090 750257937 750258432 3.770000e-91 346.0
36 TraesCS1D01G345600 chr3A 86.319 307 24 7 363 669 456508253 456508541 8.230000e-83 318.0
37 TraesCS1D01G345600 chr3A 85.121 289 35 3 3872 4160 219798057 219797777 6.450000e-74 289.0
38 TraesCS1D01G345600 chr7B 93.731 670 36 4 1220 1883 637024774 637025443 0.000000e+00 1000.0
39 TraesCS1D01G345600 chr7B 89.776 401 30 3 835 1224 637024260 637024660 2.120000e-138 503.0
40 TraesCS1D01G345600 chr7B 91.045 134 7 3 711 844 602073678 602073806 5.240000e-40 176.0
41 TraesCS1D01G345600 chr5B 90.555 667 34 4 1220 1883 517328488 517329128 0.000000e+00 856.0
42 TraesCS1D01G345600 chr5B 94.043 235 14 0 990 1224 517328140 517328374 1.740000e-94 357.0
43 TraesCS1D01G345600 chr7D 80.493 487 83 12 4609 5088 618059028 618058547 3.750000e-96 363.0
44 TraesCS1D01G345600 chr7D 93.548 62 3 1 608 669 498278575 498278515 1.950000e-14 91.6
45 TraesCS1D01G345600 chr7D 93.333 45 3 0 625 669 245469680 245469636 3.290000e-07 67.6
46 TraesCS1D01G345600 chr2D 79.879 497 85 10 4595 5090 27620696 27620214 2.920000e-92 350.0
47 TraesCS1D01G345600 chr2D 90.164 61 4 2 583 642 563004748 563004807 1.520000e-10 78.7
48 TraesCS1D01G345600 chr2D 97.674 43 1 0 618 660 563004853 563004895 1.970000e-09 75.0
49 TraesCS1D01G345600 chr2B 81.379 435 71 6 1282 1713 184124646 184124219 3.770000e-91 346.0
50 TraesCS1D01G345600 chr6B 79.317 498 92 7 4595 5090 60852 61340 6.310000e-89 339.0
51 TraesCS1D01G345600 chr6B 91.304 138 6 4 711 847 560694733 560694601 3.130000e-42 183.0
52 TraesCS1D01G345600 chr5A 79.012 486 92 9 4609 5089 662404285 662404765 1.770000e-84 324.0
53 TraesCS1D01G345600 chr4A 78.614 505 90 10 4595 5091 739158074 739157580 8.230000e-83 318.0
54 TraesCS1D01G345600 chr4A 91.045 134 6 5 711 844 629391352 629391479 5.240000e-40 176.0
55 TraesCS1D01G345600 chr4D 87.558 217 15 5 362 578 331630722 331630926 1.830000e-59 241.0
56 TraesCS1D01G345600 chr4B 87.097 217 16 5 362 578 409750998 409750794 8.520000e-58 235.0
57 TraesCS1D01G345600 chr6A 91.791 134 6 3 711 844 141369592 141369720 1.130000e-41 182.0
58 TraesCS1D01G345600 chr5D 91.791 134 6 3 711 844 558017431 558017303 1.130000e-41 182.0
59 TraesCS1D01G345600 chr7A 94.286 70 4 0 2 71 42598039 42597970 1.940000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G345600 chr1D 433515330 433520420 5090 False 4475.000000 8735 100.000000 1 5091 2 chr1D.!!$F2 5090
1 TraesCS1D01G345600 chr1D 452342103 452345157 3054 False 1343.000000 2386 85.748500 1276 4160 2 chr1D.!!$F3 2884
2 TraesCS1D01G345600 chr1B 622184205 622187069 2864 True 1352.500000 2427 86.027000 1281 4135 2 chr1B.!!$R1 2854
3 TraesCS1D01G345600 chr1B 585880804 585885967 5163 False 1064.166667 3622 93.692667 1 4696 6 chr1B.!!$F2 4695
4 TraesCS1D01G345600 chr1A 547255147 547258025 2878 False 1345.000000 2398 82.900500 1281 4160 2 chr1A.!!$F3 2879
5 TraesCS1D01G345600 chr1A 532101635 532107060 5425 False 911.857143 3280 91.938857 1 4897 7 chr1A.!!$F2 4896
6 TraesCS1D01G345600 chr3D 178532798 178535678 2880 True 1340.500000 2381 86.095500 1281 4160 2 chr3D.!!$R2 2879
7 TraesCS1D01G345600 chr3B 256783818 256786815 2997 True 1314.500000 2337 84.527000 1281 4200 2 chr3B.!!$R2 2919
8 TraesCS1D01G345600 chr3A 219797777 219800777 3000 True 1303.500000 2318 85.408000 1281 4160 2 chr3A.!!$R1 2879
9 TraesCS1D01G345600 chr7B 637024260 637025443 1183 False 751.500000 1000 91.753500 835 1883 2 chr7B.!!$F2 1048
10 TraesCS1D01G345600 chr5B 517328140 517329128 988 False 606.500000 856 92.299000 990 1883 2 chr5B.!!$F1 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 646 0.035152 TGTCCATCAGTCCATGCCAC 60.035 55.0 0.00 0.00 0.00 5.01 F
1837 2857 0.393132 TGTCCGTTGGTTCAACAGCA 60.393 50.0 10.75 4.01 43.70 4.41 F
2442 3471 0.591170 GTGCTGTGTGCGTGGTAAAT 59.409 50.0 0.00 0.00 46.63 1.40 F
3605 4879 0.106519 AACTCAGCATGGCCCCATAC 60.107 55.0 0.00 0.00 36.16 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 3471 0.187117 TTGGGGTCCTGCATGTCAAA 59.813 50.000 0.00 0.00 0.00 2.69 R
3592 4839 0.106519 AGTGAAGTATGGGGCCATGC 60.107 55.000 4.39 0.61 38.94 4.06 R
3900 5335 1.201647 CTAAAGCTTCTCGTCGGGTGA 59.798 52.381 0.00 0.00 0.00 4.02 R
5049 6965 0.032017 AACCTAGGTCTGGCCGAGAT 60.032 55.000 16.64 0.00 41.83 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
472 480 6.127479 TGCTTGTAAACCAGTGAAATTGAACT 60.127 34.615 0.00 0.00 0.00 3.01
473 481 7.067615 TGCTTGTAAACCAGTGAAATTGAACTA 59.932 33.333 0.00 0.00 0.00 2.24
474 482 7.591426 GCTTGTAAACCAGTGAAATTGAACTAG 59.409 37.037 0.00 0.00 0.00 2.57
522 530 4.333649 ACTTATGTGATTCACTGATTGCCG 59.666 41.667 17.26 1.89 35.11 5.69
628 644 1.679680 CAATGTCCATCAGTCCATGCC 59.320 52.381 0.00 0.00 0.00 4.40
629 645 0.921166 ATGTCCATCAGTCCATGCCA 59.079 50.000 0.00 0.00 0.00 4.92
630 646 0.035152 TGTCCATCAGTCCATGCCAC 60.035 55.000 0.00 0.00 0.00 5.01
631 647 0.035152 GTCCATCAGTCCATGCCACA 60.035 55.000 0.00 0.00 0.00 4.17
632 648 0.921166 TCCATCAGTCCATGCCACAT 59.079 50.000 0.00 0.00 0.00 3.21
633 649 1.285667 TCCATCAGTCCATGCCACATT 59.714 47.619 0.00 0.00 0.00 2.71
634 650 1.407618 CCATCAGTCCATGCCACATTG 59.592 52.381 0.00 0.00 0.00 2.82
635 651 1.108776 ATCAGTCCATGCCACATTGC 58.891 50.000 0.00 0.00 0.00 3.56
856 1213 8.526667 AGAGAGTAAGTCTGAGTTTGCATATA 57.473 34.615 2.62 0.00 34.71 0.86
1025 1393 2.482490 CCGTGAAACTAGTATTCCCCCG 60.482 54.545 0.00 5.54 31.75 5.73
1085 1453 1.357420 TGCAGGTGTTCCCATAACCAT 59.643 47.619 0.00 0.00 36.37 3.55
1108 1476 3.086600 CCTGCCTCCCCTCAGGTC 61.087 72.222 0.00 0.00 43.66 3.85
1177 1545 6.821665 TCAGTGTACATATTTAGGCTTTGACC 59.178 38.462 0.00 0.00 0.00 4.02
1236 1722 5.449314 CGTCAACTATGGGTCAACAAAAACA 60.449 40.000 0.00 0.00 0.00 2.83
1237 1723 5.977129 GTCAACTATGGGTCAACAAAAACAG 59.023 40.000 0.00 0.00 0.00 3.16
1296 1786 5.215160 GCACTTGGCAGTATTTATGTATGC 58.785 41.667 0.00 0.00 43.97 3.14
1297 1787 5.443261 CACTTGGCAGTATTTATGTATGCG 58.557 41.667 0.00 0.00 37.76 4.73
1299 1789 5.466728 ACTTGGCAGTATTTATGTATGCGAG 59.533 40.000 0.00 0.00 37.76 5.03
1314 1804 3.660501 TGCGAGTTTGTAGTGTCTCAT 57.339 42.857 0.00 0.00 0.00 2.90
1619 2611 4.409901 TCTTGATGGATACTTGGCATCTCA 59.590 41.667 0.00 0.00 37.61 3.27
1644 2636 3.005791 CCTTTTTGGTTGGTCATGGTCTC 59.994 47.826 0.00 0.00 0.00 3.36
1837 2857 0.393132 TGTCCGTTGGTTCAACAGCA 60.393 50.000 10.75 4.01 43.70 4.41
1878 2904 7.708752 GCACTAGAAGAAGTTACATCTGCTTAT 59.291 37.037 3.25 0.00 34.53 1.73
1879 2905 9.029243 CACTAGAAGAAGTTACATCTGCTTATG 57.971 37.037 3.25 0.00 34.53 1.90
1880 2906 8.754080 ACTAGAAGAAGTTACATCTGCTTATGT 58.246 33.333 3.25 9.07 42.62 2.29
1881 2907 9.593134 CTAGAAGAAGTTACATCTGCTTATGTT 57.407 33.333 3.25 0.00 40.52 2.71
1882 2908 8.261492 AGAAGAAGTTACATCTGCTTATGTTG 57.739 34.615 9.33 0.00 40.52 3.33
1883 2909 7.880195 AGAAGAAGTTACATCTGCTTATGTTGT 59.120 33.333 9.33 0.80 40.52 3.32
1884 2910 9.151471 GAAGAAGTTACATCTGCTTATGTTGTA 57.849 33.333 9.33 0.02 40.52 2.41
1885 2911 8.480643 AGAAGTTACATCTGCTTATGTTGTAC 57.519 34.615 9.33 6.63 40.52 2.90
1886 2912 8.094548 AGAAGTTACATCTGCTTATGTTGTACA 58.905 33.333 9.33 0.00 40.52 2.90
1887 2913 8.792830 AAGTTACATCTGCTTATGTTGTACAT 57.207 30.769 9.33 0.00 42.35 2.29
1888 2914 8.425577 AGTTACATCTGCTTATGTTGTACATC 57.574 34.615 9.33 0.00 39.88 3.06
1889 2915 8.260818 AGTTACATCTGCTTATGTTGTACATCT 58.739 33.333 9.33 0.00 39.88 2.90
1890 2916 6.915544 ACATCTGCTTATGTTGTACATCTG 57.084 37.500 0.00 0.00 39.88 2.90
1891 2917 5.295292 ACATCTGCTTATGTTGTACATCTGC 59.705 40.000 0.00 3.41 39.88 4.26
1892 2918 5.089970 TCTGCTTATGTTGTACATCTGCT 57.910 39.130 0.00 0.00 39.88 4.24
1893 2919 5.491070 TCTGCTTATGTTGTACATCTGCTT 58.509 37.500 0.00 0.00 39.88 3.91
1894 2920 6.639563 TCTGCTTATGTTGTACATCTGCTTA 58.360 36.000 0.00 0.00 39.88 3.09
2219 3248 8.665643 TTGGGGTTAAATATGATGTAGTTACG 57.334 34.615 0.00 0.00 0.00 3.18
2359 3388 7.094975 CGGTGTGGAATCTAAATGTAGAAACAA 60.095 37.037 0.00 0.00 39.81 2.83
2442 3471 0.591170 GTGCTGTGTGCGTGGTAAAT 59.409 50.000 0.00 0.00 46.63 1.40
2501 3530 1.536766 GTTTACTACCGTTGCAACCCC 59.463 52.381 23.42 0.00 0.00 4.95
2585 3614 1.723608 TTGTTGACGCACTGCAAGGG 61.724 55.000 1.11 0.00 43.62 3.95
2725 3758 4.632688 GGTTTATACCGTTCTTAGCAAGCA 59.367 41.667 0.00 0.00 34.01 3.91
2807 3840 3.807622 CCACTGTACAAGGCATATTACGG 59.192 47.826 0.00 0.00 0.00 4.02
3131 4182 7.175990 TCGAATTTTACCTAGGCACAAGAAATT 59.824 33.333 9.30 11.76 0.00 1.82
3145 4196 3.463048 AGAAATTTGAGGGTGCTGGAT 57.537 42.857 0.00 0.00 0.00 3.41
3309 4360 2.572104 ACTAGTTGGTGAACTCCATCCC 59.428 50.000 0.00 0.00 41.75 3.85
3340 4391 6.203723 GTCAGTGAAGATGACAAAGCTAAAGT 59.796 38.462 0.00 0.00 45.18 2.66
3354 4405 6.604735 AAGCTAAAGTTAACATGGCTATCG 57.395 37.500 18.14 0.00 0.00 2.92
3373 4424 3.162666 TCGGATACTGAAGACCTTGTGT 58.837 45.455 0.00 0.00 0.00 3.72
3374 4425 3.192844 TCGGATACTGAAGACCTTGTGTC 59.807 47.826 0.00 0.00 44.82 3.67
3565 4811 1.471684 CTCAACAGCTTGAGGCATTCC 59.528 52.381 7.43 0.00 46.87 3.01
3581 4827 3.196254 GCATTCCATGAATTGGTTGGTCT 59.804 43.478 0.00 0.00 46.52 3.85
3592 4839 4.981806 TTGGTTGGTCTTTGAAACTCAG 57.018 40.909 0.00 0.00 0.00 3.35
3605 4879 0.106519 AACTCAGCATGGCCCCATAC 60.107 55.000 0.00 0.00 36.16 2.39
3607 4881 0.184451 CTCAGCATGGCCCCATACTT 59.816 55.000 0.00 0.00 36.16 2.24
3618 4892 3.321396 GGCCCCATACTTCACTCTACTAC 59.679 52.174 0.00 0.00 0.00 2.73
3624 4898 6.405953 CCCATACTTCACTCTACTACTGTTGG 60.406 46.154 0.00 0.00 0.00 3.77
3634 4909 3.601443 ACTACTGTTGGAGCTGATGTC 57.399 47.619 0.00 0.00 0.00 3.06
3635 4910 2.899900 ACTACTGTTGGAGCTGATGTCA 59.100 45.455 0.00 0.00 0.00 3.58
3637 4912 3.213206 ACTGTTGGAGCTGATGTCAAA 57.787 42.857 0.00 0.00 0.00 2.69
3700 5132 8.380742 TGTTTCCTAGGATGAGTTATCTCTTT 57.619 34.615 13.57 0.00 40.98 2.52
3705 5137 8.007153 TCCTAGGATGAGTTATCTCTTTGATCA 58.993 37.037 7.62 0.00 40.98 2.92
3706 5138 8.646004 CCTAGGATGAGTTATCTCTTTGATCAA 58.354 37.037 1.05 3.38 40.98 2.57
3708 5140 8.905660 AGGATGAGTTATCTCTTTGATCAATG 57.094 34.615 9.40 11.92 40.98 2.82
3709 5141 8.492782 AGGATGAGTTATCTCTTTGATCAATGT 58.507 33.333 17.97 5.09 40.98 2.71
3710 5142 8.557864 GGATGAGTTATCTCTTTGATCAATGTG 58.442 37.037 17.97 15.99 40.98 3.21
3711 5143 9.322773 GATGAGTTATCTCTTTGATCAATGTGA 57.677 33.333 21.30 21.30 40.98 3.58
3712 5144 9.848710 ATGAGTTATCTCTTTGATCAATGTGAT 57.151 29.630 27.72 27.72 39.41 3.06
3713 5145 9.106070 TGAGTTATCTCTTTGATCAATGTGATG 57.894 33.333 30.15 17.06 38.12 3.07
3714 5146 9.107177 GAGTTATCTCTTTGATCAATGTGATGT 57.893 33.333 30.15 21.21 36.18 3.06
3715 5147 8.890718 AGTTATCTCTTTGATCAATGTGATGTG 58.109 33.333 30.15 12.96 37.20 3.21
3716 5148 8.886719 GTTATCTCTTTGATCAATGTGATGTGA 58.113 33.333 30.15 20.30 37.20 3.58
3717 5149 9.623000 TTATCTCTTTGATCAATGTGATGTGAT 57.377 29.630 30.15 19.63 37.20 3.06
3718 5150 7.316544 TCTCTTTGATCAATGTGATGTGATG 57.683 36.000 17.97 3.01 37.20 3.07
3719 5151 7.107542 TCTCTTTGATCAATGTGATGTGATGA 58.892 34.615 17.97 4.81 37.20 2.92
3720 5152 7.773690 TCTCTTTGATCAATGTGATGTGATGAT 59.226 33.333 17.97 0.00 37.20 2.45
3721 5153 7.703328 TCTTTGATCAATGTGATGTGATGATG 58.297 34.615 17.97 0.00 37.20 3.07
3722 5154 7.338449 TCTTTGATCAATGTGATGTGATGATGT 59.662 33.333 17.97 0.00 37.20 3.06
3723 5155 7.399245 TTGATCAATGTGATGTGATGATGTT 57.601 32.000 3.38 0.00 37.20 2.71
3724 5156 7.399245 TGATCAATGTGATGTGATGATGTTT 57.601 32.000 0.00 0.00 37.20 2.83
3725 5157 7.477494 TGATCAATGTGATGTGATGATGTTTC 58.523 34.615 0.00 0.00 37.20 2.78
3726 5158 6.198650 TCAATGTGATGTGATGATGTTTCC 57.801 37.500 0.00 0.00 0.00 3.13
3727 5159 5.947566 TCAATGTGATGTGATGATGTTTCCT 59.052 36.000 0.00 0.00 0.00 3.36
3728 5160 5.830000 ATGTGATGTGATGATGTTTCCTG 57.170 39.130 0.00 0.00 0.00 3.86
3729 5161 4.011698 TGTGATGTGATGATGTTTCCTGG 58.988 43.478 0.00 0.00 0.00 4.45
3730 5162 3.379372 GTGATGTGATGATGTTTCCTGGG 59.621 47.826 0.00 0.00 0.00 4.45
3731 5163 3.266513 TGATGTGATGATGTTTCCTGGGA 59.733 43.478 0.00 0.00 0.00 4.37
3732 5164 4.079615 TGATGTGATGATGTTTCCTGGGAT 60.080 41.667 0.00 0.00 0.00 3.85
3735 5167 3.881688 GTGATGATGTTTCCTGGGATGAG 59.118 47.826 0.00 0.00 0.00 2.90
3770 5203 4.682787 TCGATGTGTCCATATTGTCTCAC 58.317 43.478 0.00 0.00 0.00 3.51
3900 5335 7.855784 AGTTCCTTGAAAATCTTAACCCATT 57.144 32.000 0.00 0.00 0.00 3.16
4200 5635 5.215252 ACTTCAGATTTCGGTTCTTCAGA 57.785 39.130 0.00 0.00 0.00 3.27
4201 5636 5.799213 ACTTCAGATTTCGGTTCTTCAGAT 58.201 37.500 0.00 0.00 0.00 2.90
4203 5638 6.148480 ACTTCAGATTTCGGTTCTTCAGATTG 59.852 38.462 0.00 0.00 0.00 2.67
4204 5639 4.393062 TCAGATTTCGGTTCTTCAGATTGC 59.607 41.667 0.00 0.00 0.00 3.56
4205 5640 4.154737 CAGATTTCGGTTCTTCAGATTGCA 59.845 41.667 0.00 0.00 0.00 4.08
4206 5641 4.394300 AGATTTCGGTTCTTCAGATTGCAG 59.606 41.667 0.00 0.00 0.00 4.41
4208 5643 0.449388 CGGTTCTTCAGATTGCAGGC 59.551 55.000 0.00 0.00 0.00 4.85
4209 5644 1.538047 GGTTCTTCAGATTGCAGGCA 58.462 50.000 0.00 0.00 0.00 4.75
4255 6103 5.821995 ACCATGTCCCTTGATTTTTGTTTTG 59.178 36.000 0.00 0.00 0.00 2.44
4406 6286 3.591789 AGAATAGAGGAAGGGCAGCATA 58.408 45.455 0.00 0.00 0.00 3.14
4409 6289 5.424895 AGAATAGAGGAAGGGCAGCATATAG 59.575 44.000 0.00 0.00 0.00 1.31
4410 6290 2.264455 AGAGGAAGGGCAGCATATAGG 58.736 52.381 0.00 0.00 0.00 2.57
4458 6369 0.307760 GACAAACACCGGCAAGAGTG 59.692 55.000 0.00 0.00 39.93 3.51
4464 6375 1.202758 ACACCGGCAAGAGTGAATTCA 60.203 47.619 3.38 3.38 37.43 2.57
4472 6383 1.742761 AGAGTGAATTCATGGGCACG 58.257 50.000 12.12 0.00 36.43 5.34
4473 6384 0.099436 GAGTGAATTCATGGGCACGC 59.901 55.000 12.12 0.00 36.43 5.34
4474 6385 0.608856 AGTGAATTCATGGGCACGCA 60.609 50.000 12.12 0.00 36.43 5.24
4476 6387 0.456628 TGAATTCATGGGCACGCATG 59.543 50.000 18.64 18.64 38.01 4.06
4477 6388 0.457035 GAATTCATGGGCACGCATGT 59.543 50.000 22.30 7.97 37.92 3.21
4600 6512 3.089573 TGCAACATCGCACATTTTTCA 57.910 38.095 0.00 0.00 36.86 2.69
4607 6519 5.049167 ACATCGCACATTTTTCAACAATGT 58.951 33.333 0.00 0.00 44.14 2.71
4657 6569 6.072286 AGCATCAAGAGGATACAAACACAAAG 60.072 38.462 0.00 0.00 41.41 2.77
4672 6584 1.102809 CAAAGAGCACACACCTGGCA 61.103 55.000 0.00 0.00 0.00 4.92
4674 6586 0.178981 AAGAGCACACACCTGGCATT 60.179 50.000 0.00 0.00 0.00 3.56
4702 6614 5.484173 AATTAGGATGCACACATACAACG 57.516 39.130 0.00 0.00 39.90 4.10
4703 6615 1.086696 AGGATGCACACATACAACGC 58.913 50.000 0.00 0.00 39.90 4.84
4704 6616 1.086696 GGATGCACACATACAACGCT 58.913 50.000 0.00 0.00 37.06 5.07
4705 6617 2.093711 AGGATGCACACATACAACGCTA 60.094 45.455 0.00 0.00 39.90 4.26
4707 6619 3.485216 GGATGCACACATACAACGCTAAC 60.485 47.826 0.00 0.00 37.06 2.34
4708 6620 2.093625 ATGCACACATACAACGCTAACG 59.906 45.455 0.00 0.00 39.20 3.18
4709 6621 4.410375 ATGCACACATACAACGCTAACGT 61.410 43.478 0.00 0.00 45.28 3.99
4710 6622 6.413067 ATGCACACATACAACGCTAACGTG 62.413 45.833 0.00 0.00 43.48 4.49
4729 6641 3.425404 GTGCACACACAATAAATAGCCG 58.575 45.455 13.17 0.00 46.61 5.52
4730 6642 2.421775 TGCACACACAATAAATAGCCGG 59.578 45.455 0.00 0.00 0.00 6.13
4731 6643 2.794631 GCACACACAATAAATAGCCGGC 60.795 50.000 21.89 21.89 0.00 6.13
4732 6644 2.421775 CACACACAATAAATAGCCGGCA 59.578 45.455 31.54 15.56 0.00 5.69
4733 6645 3.085533 ACACACAATAAATAGCCGGCAA 58.914 40.909 31.54 8.67 0.00 4.52
4734 6646 3.508012 ACACACAATAAATAGCCGGCAAA 59.492 39.130 31.54 17.45 0.00 3.68
4735 6647 4.159506 ACACACAATAAATAGCCGGCAAAT 59.840 37.500 31.54 19.13 0.00 2.32
4736 6648 5.358442 ACACACAATAAATAGCCGGCAAATA 59.642 36.000 31.54 13.42 0.00 1.40
4737 6649 5.914635 CACACAATAAATAGCCGGCAAATAG 59.085 40.000 31.54 12.61 0.00 1.73
4738 6650 5.592688 ACACAATAAATAGCCGGCAAATAGT 59.407 36.000 31.54 9.02 0.00 2.12
4744 6656 6.769134 AAATAGCCGGCAAATAGTAAAGTT 57.231 33.333 31.54 5.03 0.00 2.66
4805 6717 2.044123 ACCCAAGGCGATCAAATCTC 57.956 50.000 0.00 0.00 0.00 2.75
4807 6719 2.025887 ACCCAAGGCGATCAAATCTCTT 60.026 45.455 0.00 0.00 0.00 2.85
4811 6723 5.059161 CCAAGGCGATCAAATCTCTTATCA 58.941 41.667 0.00 0.00 0.00 2.15
4812 6724 5.528690 CCAAGGCGATCAAATCTCTTATCAA 59.471 40.000 0.00 0.00 0.00 2.57
4843 6759 4.380843 ACAATGACCTTATCCACACCAA 57.619 40.909 0.00 0.00 0.00 3.67
4863 6779 1.757118 ACTATCTCATGACCCCACACG 59.243 52.381 0.00 0.00 0.00 4.49
4864 6780 2.031870 CTATCTCATGACCCCACACGA 58.968 52.381 0.00 0.00 0.00 4.35
4881 6797 2.469886 CACGAACGACGATGTTCTTCAA 59.530 45.455 17.68 0.00 44.76 2.69
4882 6798 2.470257 ACGAACGACGATGTTCTTCAAC 59.530 45.455 17.68 0.00 44.76 3.18
4885 6801 1.269413 ACGACGATGTTCTTCAACGGT 60.269 47.619 0.00 0.00 44.57 4.83
4887 6803 2.981805 CGACGATGTTCTTCAACGGTAA 59.018 45.455 0.00 0.00 44.57 2.85
4888 6804 3.181546 CGACGATGTTCTTCAACGGTAAC 60.182 47.826 0.00 0.00 44.57 2.50
4889 6805 3.719924 ACGATGTTCTTCAACGGTAACA 58.280 40.909 0.00 0.00 44.57 2.41
4890 6806 3.492011 ACGATGTTCTTCAACGGTAACAC 59.508 43.478 0.00 0.00 44.57 3.32
4891 6807 3.491639 CGATGTTCTTCAACGGTAACACA 59.508 43.478 0.00 0.00 38.39 3.72
4894 6810 5.821516 TGTTCTTCAACGGTAACACATTT 57.178 34.783 0.00 0.00 34.95 2.32
4895 6811 6.922247 TGTTCTTCAACGGTAACACATTTA 57.078 33.333 0.00 0.00 34.95 1.40
4896 6812 6.950545 TGTTCTTCAACGGTAACACATTTAG 58.049 36.000 0.00 0.00 34.95 1.85
4897 6813 6.017770 TGTTCTTCAACGGTAACACATTTAGG 60.018 38.462 0.00 0.00 34.95 2.69
4898 6814 5.856156 TCTTCAACGGTAACACATTTAGGA 58.144 37.500 0.00 0.00 0.00 2.94
4899 6815 6.289834 TCTTCAACGGTAACACATTTAGGAA 58.710 36.000 0.00 0.00 0.00 3.36
4900 6816 6.425721 TCTTCAACGGTAACACATTTAGGAAG 59.574 38.462 0.00 0.00 0.00 3.46
4901 6817 4.998672 TCAACGGTAACACATTTAGGAAGG 59.001 41.667 0.00 0.00 0.00 3.46
4902 6818 3.946606 ACGGTAACACATTTAGGAAGGG 58.053 45.455 0.00 0.00 0.00 3.95
4903 6819 3.583966 ACGGTAACACATTTAGGAAGGGA 59.416 43.478 0.00 0.00 0.00 4.20
4904 6820 4.189231 CGGTAACACATTTAGGAAGGGAG 58.811 47.826 0.00 0.00 0.00 4.30
4905 6821 3.945921 GGTAACACATTTAGGAAGGGAGC 59.054 47.826 0.00 0.00 0.00 4.70
4906 6822 3.806949 AACACATTTAGGAAGGGAGCA 57.193 42.857 0.00 0.00 0.00 4.26
4907 6823 3.806949 ACACATTTAGGAAGGGAGCAA 57.193 42.857 0.00 0.00 0.00 3.91
4908 6824 3.421844 ACACATTTAGGAAGGGAGCAAC 58.578 45.455 0.00 0.00 0.00 4.17
4909 6825 2.420022 CACATTTAGGAAGGGAGCAACG 59.580 50.000 0.00 0.00 0.00 4.10
4910 6826 1.401905 CATTTAGGAAGGGAGCAACGC 59.598 52.381 0.00 0.00 0.00 4.84
4911 6827 0.398696 TTTAGGAAGGGAGCAACGCA 59.601 50.000 0.00 0.00 0.00 5.24
4912 6828 0.321298 TTAGGAAGGGAGCAACGCAC 60.321 55.000 0.00 0.00 0.00 5.34
4913 6829 1.476845 TAGGAAGGGAGCAACGCACA 61.477 55.000 0.00 0.00 0.00 4.57
4914 6830 1.896660 GGAAGGGAGCAACGCACAA 60.897 57.895 0.00 0.00 0.00 3.33
4915 6831 1.576421 GAAGGGAGCAACGCACAAG 59.424 57.895 0.00 0.00 0.00 3.16
4916 6832 2.463675 GAAGGGAGCAACGCACAAGC 62.464 60.000 0.00 0.00 37.42 4.01
4917 6833 2.965716 AAGGGAGCAACGCACAAGCT 62.966 55.000 0.00 0.00 42.17 3.74
4918 6834 2.555547 GGGAGCAACGCACAAGCTT 61.556 57.895 0.00 0.00 39.02 3.74
4919 6835 1.081840 GGAGCAACGCACAAGCTTC 60.082 57.895 0.00 0.00 39.02 3.86
4920 6836 1.439365 GAGCAACGCACAAGCTTCG 60.439 57.895 0.00 0.00 39.02 3.79
4921 6837 2.105960 GAGCAACGCACAAGCTTCGT 62.106 55.000 5.90 5.90 39.02 3.85
4922 6838 1.722507 GCAACGCACAAGCTTCGTC 60.723 57.895 11.53 0.00 39.10 4.20
4923 6839 1.437089 CAACGCACAAGCTTCGTCG 60.437 57.895 11.53 9.97 39.10 5.12
4924 6840 1.881252 AACGCACAAGCTTCGTCGT 60.881 52.632 11.53 10.55 39.10 4.34
4925 6841 1.818221 AACGCACAAGCTTCGTCGTC 61.818 55.000 11.53 0.00 39.10 4.20
4926 6842 2.300066 CGCACAAGCTTCGTCGTCA 61.300 57.895 0.00 0.00 39.10 4.35
4927 6843 1.201825 GCACAAGCTTCGTCGTCAC 59.798 57.895 0.00 0.00 37.91 3.67
4928 6844 1.853319 CACAAGCTTCGTCGTCACC 59.147 57.895 0.00 0.00 0.00 4.02
4929 6845 1.660575 ACAAGCTTCGTCGTCACCG 60.661 57.895 0.00 0.00 0.00 4.94
4930 6846 2.049433 AAGCTTCGTCGTCACCGG 60.049 61.111 0.00 0.00 33.95 5.28
4931 6847 2.558286 AAGCTTCGTCGTCACCGGA 61.558 57.895 9.46 0.00 33.95 5.14
4932 6848 2.744307 AAGCTTCGTCGTCACCGGAC 62.744 60.000 9.46 0.00 40.77 4.79
4933 6849 2.126580 CTTCGTCGTCACCGGACC 60.127 66.667 9.46 0.00 41.13 4.46
4934 6850 3.940975 CTTCGTCGTCACCGGACCG 62.941 68.421 9.46 6.99 41.13 4.79
4935 6851 4.986645 TCGTCGTCACCGGACCGA 62.987 66.667 17.49 9.83 41.13 4.69
4936 6852 4.029186 CGTCGTCACCGGACCGAA 62.029 66.667 17.49 0.00 41.13 4.30
4937 6853 2.429739 GTCGTCACCGGACCGAAC 60.430 66.667 17.49 9.59 41.13 3.95
4938 6854 3.673484 TCGTCACCGGACCGAACC 61.673 66.667 17.49 0.00 41.13 3.62
4939 6855 3.980989 CGTCACCGGACCGAACCA 61.981 66.667 17.49 0.00 41.13 3.67
4940 6856 2.356673 GTCACCGGACCGAACCAC 60.357 66.667 17.49 2.36 38.12 4.16
4941 6857 3.618750 TCACCGGACCGAACCACC 61.619 66.667 17.49 0.00 0.00 4.61
4942 6858 3.931247 CACCGGACCGAACCACCA 61.931 66.667 17.49 0.00 0.00 4.17
4943 6859 3.162858 ACCGGACCGAACCACCAA 61.163 61.111 17.49 0.00 0.00 3.67
4944 6860 2.111460 CCGGACCGAACCACCAAA 59.889 61.111 17.49 0.00 0.00 3.28
4945 6861 1.526455 CCGGACCGAACCACCAAAA 60.526 57.895 17.49 0.00 0.00 2.44
4946 6862 1.512156 CCGGACCGAACCACCAAAAG 61.512 60.000 17.49 0.00 0.00 2.27
4947 6863 1.658114 GGACCGAACCACCAAAAGC 59.342 57.895 0.00 0.00 0.00 3.51
4948 6864 1.658114 GACCGAACCACCAAAAGCC 59.342 57.895 0.00 0.00 0.00 4.35
4949 6865 1.076632 ACCGAACCACCAAAAGCCA 60.077 52.632 0.00 0.00 0.00 4.75
4950 6866 1.106944 ACCGAACCACCAAAAGCCAG 61.107 55.000 0.00 0.00 0.00 4.85
4951 6867 1.659794 CGAACCACCAAAAGCCAGG 59.340 57.895 0.00 0.00 0.00 4.45
4952 6868 1.106944 CGAACCACCAAAAGCCAGGT 61.107 55.000 0.00 0.00 39.10 4.00
4953 6869 1.119684 GAACCACCAAAAGCCAGGTT 58.880 50.000 0.00 0.00 44.69 3.50
4954 6870 1.119684 AACCACCAAAAGCCAGGTTC 58.880 50.000 0.00 0.00 38.08 3.62
4955 6871 0.261696 ACCACCAAAAGCCAGGTTCT 59.738 50.000 0.00 0.00 35.52 3.01
4956 6872 1.497286 ACCACCAAAAGCCAGGTTCTA 59.503 47.619 0.00 0.00 35.52 2.10
4957 6873 2.091555 ACCACCAAAAGCCAGGTTCTAA 60.092 45.455 0.00 0.00 35.52 2.10
4958 6874 2.558359 CCACCAAAAGCCAGGTTCTAAG 59.442 50.000 0.00 0.00 35.52 2.18
4959 6875 3.222603 CACCAAAAGCCAGGTTCTAAGT 58.777 45.455 0.00 0.00 35.52 2.24
4960 6876 3.636764 CACCAAAAGCCAGGTTCTAAGTT 59.363 43.478 0.00 0.00 35.52 2.66
4961 6877 4.099419 CACCAAAAGCCAGGTTCTAAGTTT 59.901 41.667 0.00 0.00 35.52 2.66
4962 6878 4.714802 ACCAAAAGCCAGGTTCTAAGTTTT 59.285 37.500 0.00 0.00 33.39 2.43
4963 6879 5.163447 ACCAAAAGCCAGGTTCTAAGTTTTC 60.163 40.000 0.00 0.00 33.39 2.29
4964 6880 5.163457 CCAAAAGCCAGGTTCTAAGTTTTCA 60.163 40.000 0.00 0.00 0.00 2.69
4965 6881 5.515797 AAAGCCAGGTTCTAAGTTTTCAC 57.484 39.130 0.00 0.00 0.00 3.18
4966 6882 3.487372 AGCCAGGTTCTAAGTTTTCACC 58.513 45.455 0.00 0.00 0.00 4.02
4967 6883 2.557056 GCCAGGTTCTAAGTTTTCACCC 59.443 50.000 0.00 0.00 0.00 4.61
4968 6884 3.750922 GCCAGGTTCTAAGTTTTCACCCT 60.751 47.826 0.00 0.00 0.00 4.34
4969 6885 4.506095 GCCAGGTTCTAAGTTTTCACCCTA 60.506 45.833 0.00 0.00 0.00 3.53
4970 6886 5.627135 CCAGGTTCTAAGTTTTCACCCTAA 58.373 41.667 0.00 0.00 0.00 2.69
4971 6887 6.066032 CCAGGTTCTAAGTTTTCACCCTAAA 58.934 40.000 0.00 0.00 0.00 1.85
4972 6888 6.206829 CCAGGTTCTAAGTTTTCACCCTAAAG 59.793 42.308 0.00 0.00 0.00 1.85
4973 6889 6.996282 CAGGTTCTAAGTTTTCACCCTAAAGA 59.004 38.462 0.00 0.00 0.00 2.52
4974 6890 7.501225 CAGGTTCTAAGTTTTCACCCTAAAGAA 59.499 37.037 0.00 0.00 0.00 2.52
4975 6891 7.501559 AGGTTCTAAGTTTTCACCCTAAAGAAC 59.498 37.037 0.00 0.00 0.00 3.01
4976 6892 7.255381 GGTTCTAAGTTTTCACCCTAAAGAACC 60.255 40.741 12.98 12.98 41.97 3.62
4977 6893 6.902408 TCTAAGTTTTCACCCTAAAGAACCA 58.098 36.000 0.00 0.00 0.00 3.67
4978 6894 7.348033 TCTAAGTTTTCACCCTAAAGAACCAA 58.652 34.615 0.00 0.00 0.00 3.67
4979 6895 8.002459 TCTAAGTTTTCACCCTAAAGAACCAAT 58.998 33.333 0.00 0.00 0.00 3.16
4980 6896 6.650427 AGTTTTCACCCTAAAGAACCAATC 57.350 37.500 0.00 0.00 0.00 2.67
4981 6897 6.373759 AGTTTTCACCCTAAAGAACCAATCT 58.626 36.000 0.00 0.00 41.32 2.40
4982 6898 6.265422 AGTTTTCACCCTAAAGAACCAATCTG 59.735 38.462 0.00 0.00 38.79 2.90
4983 6899 5.576563 TTCACCCTAAAGAACCAATCTGA 57.423 39.130 0.00 0.00 38.79 3.27
4984 6900 5.165961 TCACCCTAAAGAACCAATCTGAG 57.834 43.478 0.00 0.00 38.79 3.35
4985 6901 3.691609 CACCCTAAAGAACCAATCTGAGC 59.308 47.826 0.00 0.00 38.79 4.26
4986 6902 3.330701 ACCCTAAAGAACCAATCTGAGCA 59.669 43.478 0.00 0.00 38.79 4.26
4987 6903 4.018050 ACCCTAAAGAACCAATCTGAGCAT 60.018 41.667 0.00 0.00 38.79 3.79
4988 6904 5.191722 ACCCTAAAGAACCAATCTGAGCATA 59.808 40.000 0.00 0.00 38.79 3.14
4989 6905 6.126361 ACCCTAAAGAACCAATCTGAGCATAT 60.126 38.462 0.00 0.00 38.79 1.78
4990 6906 6.429385 CCCTAAAGAACCAATCTGAGCATATC 59.571 42.308 0.00 0.00 38.79 1.63
4991 6907 6.429385 CCTAAAGAACCAATCTGAGCATATCC 59.571 42.308 0.00 0.00 38.79 2.59
4992 6908 4.000331 AGAACCAATCTGAGCATATCCG 58.000 45.455 0.00 0.00 36.88 4.18
4993 6909 3.643320 AGAACCAATCTGAGCATATCCGA 59.357 43.478 0.00 0.00 36.88 4.55
4994 6910 4.101585 AGAACCAATCTGAGCATATCCGAA 59.898 41.667 0.00 0.00 36.88 4.30
4995 6911 3.733337 ACCAATCTGAGCATATCCGAAC 58.267 45.455 0.00 0.00 0.00 3.95
4996 6912 3.134623 ACCAATCTGAGCATATCCGAACA 59.865 43.478 0.00 0.00 0.00 3.18
4997 6913 4.129380 CCAATCTGAGCATATCCGAACAA 58.871 43.478 0.00 0.00 0.00 2.83
4998 6914 4.758674 CCAATCTGAGCATATCCGAACAAT 59.241 41.667 0.00 0.00 0.00 2.71
4999 6915 5.334646 CCAATCTGAGCATATCCGAACAATG 60.335 44.000 0.00 0.00 0.00 2.82
5000 6916 3.133691 TCTGAGCATATCCGAACAATGC 58.866 45.455 0.00 0.00 45.02 3.56
5001 6917 2.221169 TGAGCATATCCGAACAATGCC 58.779 47.619 3.08 0.00 45.66 4.40
5002 6918 2.158769 TGAGCATATCCGAACAATGCCT 60.159 45.455 3.08 0.00 45.66 4.75
5003 6919 2.880890 GAGCATATCCGAACAATGCCTT 59.119 45.455 3.08 0.00 45.66 4.35
5004 6920 2.880890 AGCATATCCGAACAATGCCTTC 59.119 45.455 3.08 0.00 45.66 3.46
5005 6921 2.618241 GCATATCCGAACAATGCCTTCA 59.382 45.455 0.00 0.00 40.06 3.02
5006 6922 3.066621 GCATATCCGAACAATGCCTTCAA 59.933 43.478 0.00 0.00 40.06 2.69
5007 6923 4.601019 CATATCCGAACAATGCCTTCAAC 58.399 43.478 0.00 0.00 0.00 3.18
5008 6924 1.974265 TCCGAACAATGCCTTCAACA 58.026 45.000 0.00 0.00 0.00 3.33
5009 6925 2.302260 TCCGAACAATGCCTTCAACAA 58.698 42.857 0.00 0.00 0.00 2.83
5010 6926 2.293122 TCCGAACAATGCCTTCAACAAG 59.707 45.455 0.00 0.00 0.00 3.16
5022 6938 5.389859 CCTTCAACAAGGTAATGATGCAA 57.610 39.130 0.00 0.00 44.11 4.08
5023 6939 5.163513 CCTTCAACAAGGTAATGATGCAAC 58.836 41.667 0.00 0.00 44.11 4.17
5024 6940 5.278907 CCTTCAACAAGGTAATGATGCAACA 60.279 40.000 0.00 0.00 44.11 3.33
5025 6941 5.781210 TCAACAAGGTAATGATGCAACAA 57.219 34.783 0.00 0.00 0.00 2.83
5026 6942 5.527951 TCAACAAGGTAATGATGCAACAAC 58.472 37.500 0.00 0.00 0.00 3.32
5027 6943 5.068329 TCAACAAGGTAATGATGCAACAACA 59.932 36.000 0.00 0.00 0.00 3.33
5028 6944 5.726980 ACAAGGTAATGATGCAACAACAT 57.273 34.783 0.00 0.00 0.00 2.71
5029 6945 5.713025 ACAAGGTAATGATGCAACAACATC 58.287 37.500 0.00 0.00 45.51 3.06
5035 6951 2.282701 GATGCAACAACATCGCCATT 57.717 45.000 0.00 0.00 37.32 3.16
5036 6952 1.921887 GATGCAACAACATCGCCATTG 59.078 47.619 0.00 0.00 37.32 2.82
5037 6953 0.672889 TGCAACAACATCGCCATTGT 59.327 45.000 0.00 0.00 40.76 2.71
5038 6954 1.335780 TGCAACAACATCGCCATTGTC 60.336 47.619 0.00 0.00 38.08 3.18
5039 6955 1.335780 GCAACAACATCGCCATTGTCA 60.336 47.619 0.00 0.00 38.08 3.58
5040 6956 2.587956 CAACAACATCGCCATTGTCAG 58.412 47.619 0.00 0.00 38.08 3.51
5041 6957 1.167851 ACAACATCGCCATTGTCAGG 58.832 50.000 0.00 0.00 33.80 3.86
5042 6958 1.167851 CAACATCGCCATTGTCAGGT 58.832 50.000 0.00 0.00 0.00 4.00
5043 6959 2.290008 ACAACATCGCCATTGTCAGGTA 60.290 45.455 0.00 0.00 33.80 3.08
5044 6960 2.945008 CAACATCGCCATTGTCAGGTAT 59.055 45.455 0.00 0.00 0.00 2.73
5045 6961 4.126437 CAACATCGCCATTGTCAGGTATA 58.874 43.478 0.00 0.00 0.00 1.47
5046 6962 4.415881 ACATCGCCATTGTCAGGTATAA 57.584 40.909 0.00 0.00 0.00 0.98
5047 6963 4.127171 ACATCGCCATTGTCAGGTATAAC 58.873 43.478 0.00 0.00 0.00 1.89
5048 6964 3.188159 TCGCCATTGTCAGGTATAACC 57.812 47.619 0.00 0.00 38.99 2.85
5049 6965 2.502130 TCGCCATTGTCAGGTATAACCA 59.498 45.455 0.00 0.00 41.95 3.67
5050 6966 3.135712 TCGCCATTGTCAGGTATAACCAT 59.864 43.478 0.00 0.00 41.95 3.55
5051 6967 3.498397 CGCCATTGTCAGGTATAACCATC 59.502 47.826 0.00 0.00 41.95 3.51
5052 6968 4.718961 GCCATTGTCAGGTATAACCATCT 58.281 43.478 0.00 0.00 41.95 2.90
5053 6969 4.757149 GCCATTGTCAGGTATAACCATCTC 59.243 45.833 0.00 0.00 41.95 2.75
5054 6970 4.991056 CCATTGTCAGGTATAACCATCTCG 59.009 45.833 0.00 0.00 41.95 4.04
5055 6971 4.665833 TTGTCAGGTATAACCATCTCGG 57.334 45.455 0.00 0.00 41.95 4.63
5056 6972 2.364324 TGTCAGGTATAACCATCTCGGC 59.636 50.000 0.00 0.00 41.95 5.54
5057 6973 1.968493 TCAGGTATAACCATCTCGGCC 59.032 52.381 0.00 0.00 41.95 6.13
5058 6974 1.691976 CAGGTATAACCATCTCGGCCA 59.308 52.381 2.24 0.00 41.95 5.36
5059 6975 1.971357 AGGTATAACCATCTCGGCCAG 59.029 52.381 2.24 0.00 41.95 4.85
5060 6976 1.968493 GGTATAACCATCTCGGCCAGA 59.032 52.381 2.24 5.36 38.42 3.86
5061 6977 2.288886 GGTATAACCATCTCGGCCAGAC 60.289 54.545 2.24 0.00 38.42 3.51
5062 6978 0.759346 ATAACCATCTCGGCCAGACC 59.241 55.000 2.24 0.00 39.03 3.85
5063 6979 0.325296 TAACCATCTCGGCCAGACCT 60.325 55.000 2.24 0.00 39.03 3.85
5064 6980 0.325296 AACCATCTCGGCCAGACCTA 60.325 55.000 2.24 0.00 39.03 3.08
5065 6981 0.757188 ACCATCTCGGCCAGACCTAG 60.757 60.000 2.24 0.00 39.03 3.02
5066 6982 1.467678 CCATCTCGGCCAGACCTAGG 61.468 65.000 7.41 7.41 32.26 3.02
5067 6983 0.757188 CATCTCGGCCAGACCTAGGT 60.757 60.000 16.26 16.26 32.26 3.08
5068 6984 0.032017 ATCTCGGCCAGACCTAGGTT 60.032 55.000 17.53 3.18 32.26 3.50
5069 6985 0.252103 TCTCGGCCAGACCTAGGTTT 60.252 55.000 17.53 7.69 35.61 3.27
5070 6986 0.175989 CTCGGCCAGACCTAGGTTTC 59.824 60.000 17.53 3.89 35.61 2.78
5071 6987 1.221021 CGGCCAGACCTAGGTTTCC 59.779 63.158 17.53 13.29 35.61 3.13
5072 6988 1.550130 CGGCCAGACCTAGGTTTCCA 61.550 60.000 17.53 0.00 35.61 3.53
5073 6989 0.919710 GGCCAGACCTAGGTTTCCAT 59.080 55.000 17.53 0.00 34.51 3.41
5074 6990 1.134068 GGCCAGACCTAGGTTTCCATC 60.134 57.143 17.53 1.37 34.51 3.51
5075 6991 1.134068 GCCAGACCTAGGTTTCCATCC 60.134 57.143 17.53 0.55 0.00 3.51
5076 6992 1.490910 CCAGACCTAGGTTTCCATCCC 59.509 57.143 17.53 0.00 0.00 3.85
5077 6993 1.139058 CAGACCTAGGTTTCCATCCCG 59.861 57.143 17.53 0.00 0.00 5.14
5078 6994 0.468648 GACCTAGGTTTCCATCCCGG 59.531 60.000 17.53 0.00 0.00 5.73
5079 6995 0.043637 ACCTAGGTTTCCATCCCGGA 59.956 55.000 9.21 0.00 44.40 5.14
5086 7002 3.935024 TCCATCCCGGAACTCGAG 58.065 61.111 11.84 11.84 42.52 4.04
5087 7003 1.305287 TCCATCCCGGAACTCGAGA 59.695 57.895 21.68 0.00 42.52 4.04
5088 7004 1.035932 TCCATCCCGGAACTCGAGAC 61.036 60.000 21.68 12.35 42.52 3.36
5089 7005 1.437986 CATCCCGGAACTCGAGACC 59.562 63.158 21.68 19.57 42.43 3.85
5090 7006 1.000019 ATCCCGGAACTCGAGACCA 60.000 57.895 21.68 6.88 42.43 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
496 504 7.413988 CGGCAATCAGTGAATCACATAAGTAAA 60.414 37.037 16.38 0.00 36.74 2.01
522 530 7.015292 TGGTCACTAGGTTCATTATGTCTATCC 59.985 40.741 0.00 0.00 0.00 2.59
628 644 1.287815 CAGTGGCAGTGGCAATGTG 59.712 57.895 31.82 20.64 46.25 3.21
629 645 3.767816 CAGTGGCAGTGGCAATGT 58.232 55.556 31.82 14.07 46.25 2.71
631 647 1.547372 GAAATCAGTGGCAGTGGCAAT 59.453 47.619 22.39 18.42 43.71 3.56
632 648 0.961019 GAAATCAGTGGCAGTGGCAA 59.039 50.000 22.39 6.47 43.71 4.52
633 649 0.111061 AGAAATCAGTGGCAGTGGCA 59.889 50.000 21.53 16.56 43.71 4.92
634 650 1.740025 GTAGAAATCAGTGGCAGTGGC 59.260 52.381 21.53 10.30 40.13 5.01
635 651 3.340814 AGTAGAAATCAGTGGCAGTGG 57.659 47.619 21.53 4.13 0.00 4.00
856 1213 7.090319 TCAACCCCATGAACTAATATAGCAT 57.910 36.000 0.00 0.00 0.00 3.79
926 1285 5.911378 TTGTGAGCCAATGCATATGTTTA 57.089 34.783 0.00 0.00 41.13 2.01
984 1352 1.147824 CATCGCCTCCATCAAGCCT 59.852 57.895 0.00 0.00 0.00 4.58
1007 1375 2.121129 CCCGGGGGAATACTAGTTTCA 58.879 52.381 14.71 0.00 37.50 2.69
1085 1453 1.694169 GAGGGGAGGCAGGGATCAA 60.694 63.158 0.00 0.00 0.00 2.57
1296 1786 6.587990 AGATTCAATGAGACACTACAAACTCG 59.412 38.462 0.00 0.00 32.81 4.18
1297 1787 7.897575 AGATTCAATGAGACACTACAAACTC 57.102 36.000 0.00 0.00 0.00 3.01
1299 1789 9.371136 TGATAGATTCAATGAGACACTACAAAC 57.629 33.333 0.00 0.00 0.00 2.93
1333 1823 4.162698 ACGCCATGTATAAAGTCCCTGTAA 59.837 41.667 0.00 0.00 0.00 2.41
1447 1937 1.134310 TGACAGGCAGCATATGTGGAG 60.134 52.381 4.29 0.00 0.00 3.86
1644 2636 2.541346 CACTACAGTGTCAGCAACTGTG 59.459 50.000 17.18 10.56 43.57 3.66
1837 2857 4.474394 TCTAGTGCATAGTCTACAGCCAT 58.526 43.478 0.00 0.00 32.85 4.40
1878 2904 5.555966 TCCAACATAAGCAGATGTACAACA 58.444 37.500 0.00 0.00 39.16 3.33
1879 2905 6.494893 TTCCAACATAAGCAGATGTACAAC 57.505 37.500 0.00 0.00 39.16 3.32
1880 2906 6.349280 GCTTTCCAACATAAGCAGATGTACAA 60.349 38.462 0.00 0.00 44.70 2.41
1881 2907 5.123820 GCTTTCCAACATAAGCAGATGTACA 59.876 40.000 0.00 0.00 44.70 2.90
1882 2908 5.573146 GCTTTCCAACATAAGCAGATGTAC 58.427 41.667 4.14 0.00 44.70 2.90
1883 2909 4.332543 CGCTTTCCAACATAAGCAGATGTA 59.667 41.667 4.14 0.00 45.40 2.29
1884 2910 3.127548 CGCTTTCCAACATAAGCAGATGT 59.872 43.478 0.00 0.00 45.40 3.06
1885 2911 3.374988 TCGCTTTCCAACATAAGCAGATG 59.625 43.478 0.00 0.00 45.40 2.90
1886 2912 3.609853 TCGCTTTCCAACATAAGCAGAT 58.390 40.909 0.00 0.00 45.40 2.90
1887 2913 3.002791 CTCGCTTTCCAACATAAGCAGA 58.997 45.455 0.00 0.00 45.40 4.26
1888 2914 2.476854 GCTCGCTTTCCAACATAAGCAG 60.477 50.000 0.00 0.00 45.40 4.24
1889 2915 1.468520 GCTCGCTTTCCAACATAAGCA 59.531 47.619 0.00 0.00 45.40 3.91
1890 2916 1.468520 TGCTCGCTTTCCAACATAAGC 59.531 47.619 0.00 0.00 42.51 3.09
1891 2917 3.829886 TTGCTCGCTTTCCAACATAAG 57.170 42.857 0.00 0.00 0.00 1.73
1892 2918 4.484236 CAATTGCTCGCTTTCCAACATAA 58.516 39.130 0.00 0.00 0.00 1.90
1893 2919 3.119531 CCAATTGCTCGCTTTCCAACATA 60.120 43.478 0.00 0.00 0.00 2.29
1894 2920 2.353011 CCAATTGCTCGCTTTCCAACAT 60.353 45.455 0.00 0.00 0.00 2.71
2207 3236 4.635324 TCCGATGTGTACGTAACTACATCA 59.365 41.667 28.92 18.11 41.59 3.07
2359 3388 5.930135 ACAACAAGTTCTCCTCAACAGTAT 58.070 37.500 0.00 0.00 0.00 2.12
2442 3471 0.187117 TTGGGGTCCTGCATGTCAAA 59.813 50.000 0.00 0.00 0.00 2.69
2501 3530 1.220529 CAACACGATGATGGGGATCG 58.779 55.000 0.00 0.00 46.55 3.69
2585 3614 1.996191 GAACGAAGAGCATGAGTCACC 59.004 52.381 0.00 0.00 0.00 4.02
2807 3840 1.730446 GCTTCAATCTTCAAGCCACGC 60.730 52.381 0.00 0.00 39.36 5.34
3131 4182 2.106511 GCCTTATATCCAGCACCCTCAA 59.893 50.000 0.00 0.00 0.00 3.02
3145 4196 6.041511 TGTTTGCGAACGTTATAGCCTTATA 58.958 36.000 12.19 0.00 38.65 0.98
3204 4255 2.526873 ACCTCCTCACCCACGCTT 60.527 61.111 0.00 0.00 0.00 4.68
3309 4360 0.526211 TCATCTTCACTGACCCGTCG 59.474 55.000 0.00 0.00 0.00 5.12
3336 4387 6.706270 CAGTATCCGATAGCCATGTTAACTTT 59.294 38.462 7.22 0.00 0.00 2.66
3340 4391 6.266786 TCTTCAGTATCCGATAGCCATGTTAA 59.733 38.462 0.00 0.00 0.00 2.01
3373 4424 5.307976 TCAAAATCCACCAAAGAGAGAGAGA 59.692 40.000 0.00 0.00 0.00 3.10
3374 4425 5.411053 GTCAAAATCCACCAAAGAGAGAGAG 59.589 44.000 0.00 0.00 0.00 3.20
3520 4739 7.775093 AGGCAATATAAGCATAGTTGAACAGAA 59.225 33.333 0.00 0.00 0.00 3.02
3565 4811 6.282930 AGTTTCAAAGACCAACCAATTCATG 58.717 36.000 0.00 0.00 0.00 3.07
3581 4827 0.968405 GGGCCATGCTGAGTTTCAAA 59.032 50.000 4.39 0.00 0.00 2.69
3592 4839 0.106519 AGTGAAGTATGGGGCCATGC 60.107 55.000 4.39 0.61 38.94 4.06
3605 4879 4.461081 AGCTCCAACAGTAGTAGAGTGAAG 59.539 45.833 0.00 0.00 33.19 3.02
3607 4881 3.759086 CAGCTCCAACAGTAGTAGAGTGA 59.241 47.826 0.00 0.00 33.19 3.41
3618 4892 3.405831 TCTTTGACATCAGCTCCAACAG 58.594 45.455 0.00 0.00 0.00 3.16
3664 5095 7.674120 TCATCCTAGGAAACATCATCACATAG 58.326 38.462 17.30 0.00 0.00 2.23
3683 5115 8.492782 ACATTGATCAAAGAGATAACTCATCCT 58.507 33.333 17.08 0.00 44.79 3.24
3700 5132 7.399245 AAACATCATCACATCACATTGATCA 57.601 32.000 0.00 0.00 34.28 2.92
3705 5137 5.126545 CCAGGAAACATCATCACATCACATT 59.873 40.000 0.00 0.00 0.00 2.71
3706 5138 4.643334 CCAGGAAACATCATCACATCACAT 59.357 41.667 0.00 0.00 0.00 3.21
3707 5139 4.011698 CCAGGAAACATCATCACATCACA 58.988 43.478 0.00 0.00 0.00 3.58
3708 5140 3.379372 CCCAGGAAACATCATCACATCAC 59.621 47.826 0.00 0.00 0.00 3.06
3709 5141 3.266513 TCCCAGGAAACATCATCACATCA 59.733 43.478 0.00 0.00 0.00 3.07
3710 5142 3.889815 TCCCAGGAAACATCATCACATC 58.110 45.455 0.00 0.00 0.00 3.06
3711 5143 4.079615 TCATCCCAGGAAACATCATCACAT 60.080 41.667 0.00 0.00 0.00 3.21
3712 5144 3.266513 TCATCCCAGGAAACATCATCACA 59.733 43.478 0.00 0.00 0.00 3.58
3713 5145 3.881688 CTCATCCCAGGAAACATCATCAC 59.118 47.826 0.00 0.00 0.00 3.06
3714 5146 3.524789 ACTCATCCCAGGAAACATCATCA 59.475 43.478 0.00 0.00 0.00 3.07
3715 5147 4.162040 ACTCATCCCAGGAAACATCATC 57.838 45.455 0.00 0.00 0.00 2.92
3716 5148 4.598036 AACTCATCCCAGGAAACATCAT 57.402 40.909 0.00 0.00 0.00 2.45
3717 5149 5.429762 AGATAACTCATCCCAGGAAACATCA 59.570 40.000 0.00 0.00 33.75 3.07
3718 5150 5.934781 AGATAACTCATCCCAGGAAACATC 58.065 41.667 0.00 0.00 33.75 3.06
3719 5151 5.669447 AGAGATAACTCATCCCAGGAAACAT 59.331 40.000 2.56 0.00 44.79 2.71
3720 5152 5.032846 AGAGATAACTCATCCCAGGAAACA 58.967 41.667 2.56 0.00 44.79 2.83
3721 5153 5.622346 AGAGATAACTCATCCCAGGAAAC 57.378 43.478 2.56 0.00 44.79 2.78
3722 5154 6.240549 GAAGAGATAACTCATCCCAGGAAA 57.759 41.667 2.56 0.00 44.79 3.13
3723 5155 5.878406 GAAGAGATAACTCATCCCAGGAA 57.122 43.478 2.56 0.00 44.79 3.36
3730 5162 6.585702 CACATCGATGGAAGAGATAACTCATC 59.414 42.308 28.09 0.00 44.79 2.92
3731 5163 6.041409 ACACATCGATGGAAGAGATAACTCAT 59.959 38.462 28.09 0.00 44.79 2.90
3732 5164 5.360999 ACACATCGATGGAAGAGATAACTCA 59.639 40.000 28.09 0.00 44.79 3.41
3735 5167 4.985409 GGACACATCGATGGAAGAGATAAC 59.015 45.833 28.09 7.97 0.00 1.89
3750 5183 5.911752 AGAGTGAGACAATATGGACACATC 58.088 41.667 0.00 0.00 38.53 3.06
3770 5203 8.899427 ATGTACCATTTATGATTGACTGAGAG 57.101 34.615 0.00 0.00 0.00 3.20
3841 5276 4.054671 GCTTATCATCTTCTCCCAGTTCG 58.945 47.826 0.00 0.00 0.00 3.95
3900 5335 1.201647 CTAAAGCTTCTCGTCGGGTGA 59.798 52.381 0.00 0.00 0.00 4.02
4255 6103 5.007724 GCAGGCATAGTTTATACCAAGTGAC 59.992 44.000 0.00 0.00 0.00 3.67
4409 6289 9.159364 ACGATAACCTTTCACTACTTAATTTCC 57.841 33.333 0.00 0.00 0.00 3.13
4410 6290 9.968743 CACGATAACCTTTCACTACTTAATTTC 57.031 33.333 0.00 0.00 0.00 2.17
4458 6369 0.457035 ACATGCGTGCCCATGAATTC 59.543 50.000 5.64 0.00 44.12 2.17
4472 6383 2.249557 CTTGTCTCAGGCGCACATGC 62.250 60.000 10.83 0.00 37.78 4.06
4473 6384 0.671472 TCTTGTCTCAGGCGCACATG 60.671 55.000 10.83 7.05 0.00 3.21
4474 6385 0.390866 CTCTTGTCTCAGGCGCACAT 60.391 55.000 10.83 0.00 0.00 3.21
4476 6387 1.739562 CCTCTTGTCTCAGGCGCAC 60.740 63.158 10.83 0.00 0.00 5.34
4477 6388 2.659016 CCTCTTGTCTCAGGCGCA 59.341 61.111 10.83 0.00 0.00 6.09
4480 6391 0.616111 TCCTCCCTCTTGTCTCAGGC 60.616 60.000 0.00 0.00 0.00 4.85
4481 6392 1.761784 CATCCTCCCTCTTGTCTCAGG 59.238 57.143 0.00 0.00 0.00 3.86
4482 6393 1.138661 GCATCCTCCCTCTTGTCTCAG 59.861 57.143 0.00 0.00 0.00 3.35
4483 6394 1.198713 GCATCCTCCCTCTTGTCTCA 58.801 55.000 0.00 0.00 0.00 3.27
4486 6397 1.144936 CCGCATCCTCCCTCTTGTC 59.855 63.158 0.00 0.00 0.00 3.18
4487 6398 3.036429 GCCGCATCCTCCCTCTTGT 62.036 63.158 0.00 0.00 0.00 3.16
4538 6449 6.130569 TGTTTTTGAACCCTACAAGTATGGT 58.869 36.000 1.89 1.89 35.92 3.55
4546 6457 7.284074 TCTGTATCTTGTTTTTGAACCCTACA 58.716 34.615 0.00 0.00 0.00 2.74
4628 6540 7.119699 TGTGTTTGTATCCTCTTGATGCTTTAG 59.880 37.037 0.00 0.00 37.04 1.85
4657 6569 0.038892 CAAATGCCAGGTGTGTGCTC 60.039 55.000 0.00 0.00 0.00 4.26
4708 6620 3.425404 CGGCTATTTATTGTGTGTGCAC 58.575 45.455 10.75 10.75 45.44 4.57
4709 6621 2.421775 CCGGCTATTTATTGTGTGTGCA 59.578 45.455 0.00 0.00 0.00 4.57
4710 6622 2.794631 GCCGGCTATTTATTGTGTGTGC 60.795 50.000 22.15 0.00 0.00 4.57
4711 6623 2.421775 TGCCGGCTATTTATTGTGTGTG 59.578 45.455 29.70 0.00 0.00 3.82
4712 6624 2.717390 TGCCGGCTATTTATTGTGTGT 58.283 42.857 29.70 0.00 0.00 3.72
4713 6625 3.773860 TTGCCGGCTATTTATTGTGTG 57.226 42.857 29.70 0.00 0.00 3.82
4714 6626 5.592688 ACTATTTGCCGGCTATTTATTGTGT 59.407 36.000 29.70 10.12 0.00 3.72
4715 6627 6.072112 ACTATTTGCCGGCTATTTATTGTG 57.928 37.500 29.70 9.50 0.00 3.33
4716 6628 7.811117 TTACTATTTGCCGGCTATTTATTGT 57.189 32.000 29.70 18.48 0.00 2.71
4717 6629 8.349983 ACTTTACTATTTGCCGGCTATTTATTG 58.650 33.333 29.70 13.72 0.00 1.90
4718 6630 8.459911 ACTTTACTATTTGCCGGCTATTTATT 57.540 30.769 29.70 11.44 0.00 1.40
4719 6631 8.459911 AACTTTACTATTTGCCGGCTATTTAT 57.540 30.769 29.70 13.31 0.00 1.40
4720 6632 7.868906 AACTTTACTATTTGCCGGCTATTTA 57.131 32.000 29.70 13.70 0.00 1.40
4721 6633 6.769134 AACTTTACTATTTGCCGGCTATTT 57.231 33.333 29.70 13.26 0.00 1.40
4722 6634 9.734984 ATATAACTTTACTATTTGCCGGCTATT 57.265 29.630 29.70 18.88 0.00 1.73
4725 6637 9.216117 CTTATATAACTTTACTATTTGCCGGCT 57.784 33.333 29.70 10.43 0.00 5.52
4726 6638 9.211485 TCTTATATAACTTTACTATTTGCCGGC 57.789 33.333 22.73 22.73 0.00 6.13
4770 6682 5.246203 GCCTTGGGTATTTTCTTTTTCCTCT 59.754 40.000 0.00 0.00 0.00 3.69
4771 6683 5.479306 GCCTTGGGTATTTTCTTTTTCCTC 58.521 41.667 0.00 0.00 0.00 3.71
4781 6693 4.956075 AGATTTGATCGCCTTGGGTATTTT 59.044 37.500 0.00 0.00 0.00 1.82
4789 6701 6.609237 TTGATAAGAGATTTGATCGCCTTG 57.391 37.500 0.00 0.00 32.37 3.61
4826 6738 5.030147 AGATAGTTGGTGTGGATAAGGTCA 58.970 41.667 0.00 0.00 0.00 4.02
4837 6753 2.505819 GGGGTCATGAGATAGTTGGTGT 59.494 50.000 0.00 0.00 0.00 4.16
4843 6759 1.757118 CGTGTGGGGTCATGAGATAGT 59.243 52.381 0.00 0.00 0.00 2.12
4863 6779 2.160013 CCGTTGAAGAACATCGTCGTTC 60.160 50.000 10.46 10.46 44.63 3.95
4864 6780 1.790623 CCGTTGAAGAACATCGTCGTT 59.209 47.619 0.00 0.00 39.25 3.85
4870 6786 5.607119 ATGTGTTACCGTTGAAGAACATC 57.393 39.130 0.00 0.00 34.54 3.06
4881 6797 3.583966 TCCCTTCCTAAATGTGTTACCGT 59.416 43.478 0.00 0.00 0.00 4.83
4882 6798 4.189231 CTCCCTTCCTAAATGTGTTACCG 58.811 47.826 0.00 0.00 0.00 4.02
4885 6801 4.919774 TGCTCCCTTCCTAAATGTGTTA 57.080 40.909 0.00 0.00 0.00 2.41
4887 6803 3.421844 GTTGCTCCCTTCCTAAATGTGT 58.578 45.455 0.00 0.00 0.00 3.72
4888 6804 2.420022 CGTTGCTCCCTTCCTAAATGTG 59.580 50.000 0.00 0.00 0.00 3.21
4889 6805 2.711542 CGTTGCTCCCTTCCTAAATGT 58.288 47.619 0.00 0.00 0.00 2.71
4890 6806 1.401905 GCGTTGCTCCCTTCCTAAATG 59.598 52.381 0.00 0.00 0.00 2.32
4891 6807 1.004277 TGCGTTGCTCCCTTCCTAAAT 59.996 47.619 0.00 0.00 0.00 1.40
4894 6810 1.295423 GTGCGTTGCTCCCTTCCTA 59.705 57.895 0.00 0.00 0.00 2.94
4895 6811 2.032681 GTGCGTTGCTCCCTTCCT 59.967 61.111 0.00 0.00 0.00 3.36
4896 6812 1.856265 CTTGTGCGTTGCTCCCTTCC 61.856 60.000 0.00 0.00 0.00 3.46
4897 6813 1.576421 CTTGTGCGTTGCTCCCTTC 59.424 57.895 0.00 0.00 0.00 3.46
4898 6814 2.555547 GCTTGTGCGTTGCTCCCTT 61.556 57.895 0.00 0.00 0.00 3.95
4899 6815 2.965716 AAGCTTGTGCGTTGCTCCCT 62.966 55.000 0.00 0.00 45.42 4.20
4900 6816 2.463675 GAAGCTTGTGCGTTGCTCCC 62.464 60.000 2.10 0.00 45.42 4.30
4901 6817 1.081840 GAAGCTTGTGCGTTGCTCC 60.082 57.895 2.10 0.00 45.42 4.70
4902 6818 1.439365 CGAAGCTTGTGCGTTGCTC 60.439 57.895 2.10 0.00 45.42 4.26
4903 6819 2.105960 GACGAAGCTTGTGCGTTGCT 62.106 55.000 2.10 0.00 45.42 3.91
4904 6820 1.722507 GACGAAGCTTGTGCGTTGC 60.723 57.895 2.10 0.00 45.42 4.17
4905 6821 1.437089 CGACGAAGCTTGTGCGTTG 60.437 57.895 2.10 7.91 45.42 4.10
4906 6822 1.818221 GACGACGAAGCTTGTGCGTT 61.818 55.000 2.10 0.00 45.42 4.84
4907 6823 2.279252 ACGACGAAGCTTGTGCGT 60.279 55.556 2.10 7.69 45.42 5.24
4908 6824 2.300066 TGACGACGAAGCTTGTGCG 61.300 57.895 2.10 3.68 45.42 5.34
4909 6825 1.201825 GTGACGACGAAGCTTGTGC 59.798 57.895 2.10 0.00 40.05 4.57
4910 6826 1.853319 GGTGACGACGAAGCTTGTG 59.147 57.895 2.10 0.00 0.00 3.33
4911 6827 4.338327 GGTGACGACGAAGCTTGT 57.662 55.556 2.10 1.92 0.00 3.16
4923 6839 2.356673 GTGGTTCGGTCCGGTGAC 60.357 66.667 12.29 8.02 40.98 3.67
4924 6840 3.618750 GGTGGTTCGGTCCGGTGA 61.619 66.667 12.29 0.00 0.00 4.02
4925 6841 2.944409 TTTGGTGGTTCGGTCCGGTG 62.944 60.000 12.29 0.00 0.00 4.94
4926 6842 2.268167 TTTTGGTGGTTCGGTCCGGT 62.268 55.000 12.29 0.00 0.00 5.28
4927 6843 1.512156 CTTTTGGTGGTTCGGTCCGG 61.512 60.000 12.29 0.00 0.00 5.14
4928 6844 1.946267 CTTTTGGTGGTTCGGTCCG 59.054 57.895 4.39 4.39 0.00 4.79
4929 6845 1.658114 GCTTTTGGTGGTTCGGTCC 59.342 57.895 0.00 0.00 0.00 4.46
4930 6846 1.104577 TGGCTTTTGGTGGTTCGGTC 61.105 55.000 0.00 0.00 0.00 4.79
4931 6847 1.076632 TGGCTTTTGGTGGTTCGGT 60.077 52.632 0.00 0.00 0.00 4.69
4932 6848 1.659794 CTGGCTTTTGGTGGTTCGG 59.340 57.895 0.00 0.00 0.00 4.30
4933 6849 1.106944 ACCTGGCTTTTGGTGGTTCG 61.107 55.000 0.00 0.00 34.90 3.95
4934 6850 1.068588 GAACCTGGCTTTTGGTGGTTC 59.931 52.381 7.33 7.33 46.16 3.62
4935 6851 1.119684 GAACCTGGCTTTTGGTGGTT 58.880 50.000 0.00 0.00 42.85 3.67
4936 6852 0.261696 AGAACCTGGCTTTTGGTGGT 59.738 50.000 0.00 0.00 36.57 4.16
4937 6853 2.286365 TAGAACCTGGCTTTTGGTGG 57.714 50.000 0.00 0.00 36.57 4.61
4938 6854 3.222603 ACTTAGAACCTGGCTTTTGGTG 58.777 45.455 0.00 0.00 36.57 4.17
4939 6855 3.595190 ACTTAGAACCTGGCTTTTGGT 57.405 42.857 0.00 0.00 38.35 3.67
4940 6856 4.937201 AAACTTAGAACCTGGCTTTTGG 57.063 40.909 0.00 0.00 0.00 3.28
4941 6857 5.748630 GTGAAAACTTAGAACCTGGCTTTTG 59.251 40.000 0.00 0.00 0.00 2.44
4942 6858 5.163447 GGTGAAAACTTAGAACCTGGCTTTT 60.163 40.000 0.00 0.00 0.00 2.27
4943 6859 4.341235 GGTGAAAACTTAGAACCTGGCTTT 59.659 41.667 0.00 0.00 0.00 3.51
4944 6860 3.889538 GGTGAAAACTTAGAACCTGGCTT 59.110 43.478 0.00 0.00 0.00 4.35
4945 6861 3.487372 GGTGAAAACTTAGAACCTGGCT 58.513 45.455 0.00 0.00 0.00 4.75
4946 6862 2.557056 GGGTGAAAACTTAGAACCTGGC 59.443 50.000 0.00 0.00 0.00 4.85
4947 6863 4.100279 AGGGTGAAAACTTAGAACCTGG 57.900 45.455 0.00 0.00 0.00 4.45
4948 6864 6.996282 TCTTTAGGGTGAAAACTTAGAACCTG 59.004 38.462 0.00 0.00 0.00 4.00
4949 6865 7.145474 TCTTTAGGGTGAAAACTTAGAACCT 57.855 36.000 0.00 0.00 0.00 3.50
4950 6866 7.255381 GGTTCTTTAGGGTGAAAACTTAGAACC 60.255 40.741 12.69 12.69 42.84 3.62
4951 6867 7.283807 TGGTTCTTTAGGGTGAAAACTTAGAAC 59.716 37.037 0.00 0.00 36.94 3.01
4952 6868 7.348033 TGGTTCTTTAGGGTGAAAACTTAGAA 58.652 34.615 0.00 0.00 0.00 2.10
4953 6869 6.902408 TGGTTCTTTAGGGTGAAAACTTAGA 58.098 36.000 0.00 0.00 0.00 2.10
4954 6870 7.576861 TTGGTTCTTTAGGGTGAAAACTTAG 57.423 36.000 0.00 0.00 0.00 2.18
4955 6871 8.002459 AGATTGGTTCTTTAGGGTGAAAACTTA 58.998 33.333 0.00 0.00 0.00 2.24
4956 6872 6.839134 AGATTGGTTCTTTAGGGTGAAAACTT 59.161 34.615 0.00 0.00 0.00 2.66
4957 6873 6.265422 CAGATTGGTTCTTTAGGGTGAAAACT 59.735 38.462 0.00 0.00 29.93 2.66
4958 6874 6.264518 TCAGATTGGTTCTTTAGGGTGAAAAC 59.735 38.462 0.00 0.00 29.93 2.43
4959 6875 6.369629 TCAGATTGGTTCTTTAGGGTGAAAA 58.630 36.000 0.00 0.00 29.93 2.29
4960 6876 5.947663 TCAGATTGGTTCTTTAGGGTGAAA 58.052 37.500 0.00 0.00 29.93 2.69
4961 6877 5.560724 CTCAGATTGGTTCTTTAGGGTGAA 58.439 41.667 0.00 0.00 29.93 3.18
4962 6878 4.565652 GCTCAGATTGGTTCTTTAGGGTGA 60.566 45.833 0.00 0.00 29.93 4.02
4963 6879 3.691609 GCTCAGATTGGTTCTTTAGGGTG 59.308 47.826 0.00 0.00 29.93 4.61
4964 6880 3.330701 TGCTCAGATTGGTTCTTTAGGGT 59.669 43.478 0.00 0.00 29.93 4.34
4965 6881 3.955471 TGCTCAGATTGGTTCTTTAGGG 58.045 45.455 0.00 0.00 29.93 3.53
4966 6882 6.429385 GGATATGCTCAGATTGGTTCTTTAGG 59.571 42.308 0.00 0.00 29.93 2.69
4967 6883 6.146837 CGGATATGCTCAGATTGGTTCTTTAG 59.853 42.308 0.00 0.00 29.93 1.85
4968 6884 5.991606 CGGATATGCTCAGATTGGTTCTTTA 59.008 40.000 0.00 0.00 29.93 1.85
4969 6885 4.818546 CGGATATGCTCAGATTGGTTCTTT 59.181 41.667 0.00 0.00 29.93 2.52
4970 6886 4.101585 TCGGATATGCTCAGATTGGTTCTT 59.898 41.667 0.00 0.00 29.93 2.52
4971 6887 3.643320 TCGGATATGCTCAGATTGGTTCT 59.357 43.478 0.00 0.00 33.90 3.01
4972 6888 3.995199 TCGGATATGCTCAGATTGGTTC 58.005 45.455 0.00 0.00 0.00 3.62
4973 6889 4.130118 GTTCGGATATGCTCAGATTGGTT 58.870 43.478 0.00 0.00 0.00 3.67
4974 6890 3.134623 TGTTCGGATATGCTCAGATTGGT 59.865 43.478 0.00 0.00 0.00 3.67
4975 6891 3.732212 TGTTCGGATATGCTCAGATTGG 58.268 45.455 0.00 0.00 0.00 3.16
4976 6892 5.686834 CATTGTTCGGATATGCTCAGATTG 58.313 41.667 0.00 0.00 0.00 2.67
4977 6893 4.214971 GCATTGTTCGGATATGCTCAGATT 59.785 41.667 6.52 0.00 41.04 2.40
4978 6894 3.750130 GCATTGTTCGGATATGCTCAGAT 59.250 43.478 6.52 0.00 41.04 2.90
4979 6895 3.133691 GCATTGTTCGGATATGCTCAGA 58.866 45.455 6.52 0.00 41.04 3.27
4980 6896 2.225019 GGCATTGTTCGGATATGCTCAG 59.775 50.000 11.98 0.00 43.17 3.35
4981 6897 2.158769 AGGCATTGTTCGGATATGCTCA 60.159 45.455 11.98 0.00 43.17 4.26
4982 6898 2.498167 AGGCATTGTTCGGATATGCTC 58.502 47.619 11.98 4.68 43.17 4.26
4983 6899 2.645838 AGGCATTGTTCGGATATGCT 57.354 45.000 11.98 0.00 43.17 3.79
4984 6900 2.618241 TGAAGGCATTGTTCGGATATGC 59.382 45.455 5.44 5.44 42.95 3.14
4985 6901 4.096231 TGTTGAAGGCATTGTTCGGATATG 59.904 41.667 0.00 0.00 0.00 1.78
4986 6902 4.269183 TGTTGAAGGCATTGTTCGGATAT 58.731 39.130 0.00 0.00 0.00 1.63
4987 6903 3.680490 TGTTGAAGGCATTGTTCGGATA 58.320 40.909 0.00 0.00 0.00 2.59
4988 6904 2.513753 TGTTGAAGGCATTGTTCGGAT 58.486 42.857 0.00 0.00 0.00 4.18
4989 6905 1.974265 TGTTGAAGGCATTGTTCGGA 58.026 45.000 0.00 0.00 0.00 4.55
4990 6906 2.607771 CCTTGTTGAAGGCATTGTTCGG 60.608 50.000 0.00 0.00 42.60 4.30
4991 6907 2.664916 CCTTGTTGAAGGCATTGTTCG 58.335 47.619 0.00 0.00 42.60 3.95
5001 6917 5.771469 TGTTGCATCATTACCTTGTTGAAG 58.229 37.500 0.00 0.00 0.00 3.02
5002 6918 5.781210 TGTTGCATCATTACCTTGTTGAA 57.219 34.783 0.00 0.00 0.00 2.69
5003 6919 5.068329 TGTTGTTGCATCATTACCTTGTTGA 59.932 36.000 0.00 0.00 0.00 3.18
5004 6920 5.288015 TGTTGTTGCATCATTACCTTGTTG 58.712 37.500 0.00 0.00 0.00 3.33
5005 6921 5.528043 TGTTGTTGCATCATTACCTTGTT 57.472 34.783 0.00 0.00 0.00 2.83
5006 6922 5.619757 CGATGTTGTTGCATCATTACCTTGT 60.620 40.000 0.00 0.00 43.92 3.16
5007 6923 4.794762 CGATGTTGTTGCATCATTACCTTG 59.205 41.667 0.00 0.00 43.92 3.61
5008 6924 4.675146 GCGATGTTGTTGCATCATTACCTT 60.675 41.667 0.00 0.00 43.92 3.50
5009 6925 3.181497 GCGATGTTGTTGCATCATTACCT 60.181 43.478 0.00 0.00 43.92 3.08
5010 6926 3.108144 GCGATGTTGTTGCATCATTACC 58.892 45.455 0.00 0.00 43.92 2.85
5011 6927 3.108144 GGCGATGTTGTTGCATCATTAC 58.892 45.455 0.00 0.00 43.92 1.89
5012 6928 2.751806 TGGCGATGTTGTTGCATCATTA 59.248 40.909 0.00 0.00 43.92 1.90
5013 6929 1.545136 TGGCGATGTTGTTGCATCATT 59.455 42.857 0.00 0.00 43.92 2.57
5014 6930 1.175654 TGGCGATGTTGTTGCATCAT 58.824 45.000 0.00 0.00 43.92 2.45
5015 6931 1.175654 ATGGCGATGTTGTTGCATCA 58.824 45.000 6.83 0.00 43.92 3.07
5016 6932 1.921887 CAATGGCGATGTTGTTGCATC 59.078 47.619 0.00 0.00 41.21 3.91
5017 6933 1.273048 ACAATGGCGATGTTGTTGCAT 59.727 42.857 0.00 0.00 39.13 3.96
5018 6934 0.672889 ACAATGGCGATGTTGTTGCA 59.327 45.000 0.00 0.00 39.13 4.08
5019 6935 1.335780 TGACAATGGCGATGTTGTTGC 60.336 47.619 0.00 0.00 38.57 4.17
5020 6936 2.587956 CTGACAATGGCGATGTTGTTG 58.412 47.619 0.00 0.00 38.57 3.33
5021 6937 1.541147 CCTGACAATGGCGATGTTGTT 59.459 47.619 0.00 0.00 38.57 2.83
5022 6938 1.167851 CCTGACAATGGCGATGTTGT 58.832 50.000 0.00 0.00 40.97 3.32
5023 6939 1.167851 ACCTGACAATGGCGATGTTG 58.832 50.000 0.00 0.00 0.00 3.33
5024 6940 2.779755 TACCTGACAATGGCGATGTT 57.220 45.000 0.00 0.00 0.00 2.71
5025 6941 4.127171 GTTATACCTGACAATGGCGATGT 58.873 43.478 0.00 0.00 0.00 3.06
5026 6942 3.498397 GGTTATACCTGACAATGGCGATG 59.502 47.826 0.00 0.00 34.73 3.84
5027 6943 3.135712 TGGTTATACCTGACAATGGCGAT 59.864 43.478 0.00 0.00 39.58 4.58
5028 6944 2.502130 TGGTTATACCTGACAATGGCGA 59.498 45.455 0.00 0.00 39.58 5.54
5029 6945 2.912771 TGGTTATACCTGACAATGGCG 58.087 47.619 0.00 0.00 39.58 5.69
5030 6946 4.718961 AGATGGTTATACCTGACAATGGC 58.281 43.478 0.00 0.00 39.58 4.40
5031 6947 4.991056 CGAGATGGTTATACCTGACAATGG 59.009 45.833 0.00 0.00 39.58 3.16
5032 6948 4.991056 CCGAGATGGTTATACCTGACAATG 59.009 45.833 0.00 0.00 39.58 2.82
5033 6949 4.503296 GCCGAGATGGTTATACCTGACAAT 60.503 45.833 0.00 0.00 39.58 2.71
5034 6950 3.181469 GCCGAGATGGTTATACCTGACAA 60.181 47.826 0.00 0.00 39.58 3.18
5035 6951 2.364324 GCCGAGATGGTTATACCTGACA 59.636 50.000 0.00 0.00 39.58 3.58
5036 6952 2.288886 GGCCGAGATGGTTATACCTGAC 60.289 54.545 0.00 0.00 39.58 3.51
5037 6953 1.968493 GGCCGAGATGGTTATACCTGA 59.032 52.381 0.00 0.00 39.58 3.86
5038 6954 1.691976 TGGCCGAGATGGTTATACCTG 59.308 52.381 0.00 0.00 39.58 4.00
5039 6955 1.971357 CTGGCCGAGATGGTTATACCT 59.029 52.381 0.00 0.00 39.58 3.08
5040 6956 1.968493 TCTGGCCGAGATGGTTATACC 59.032 52.381 0.00 0.00 41.21 2.73
5041 6957 2.288886 GGTCTGGCCGAGATGGTTATAC 60.289 54.545 0.00 0.00 41.21 1.47
5042 6958 1.968493 GGTCTGGCCGAGATGGTTATA 59.032 52.381 0.00 0.00 41.21 0.98
5043 6959 0.759346 GGTCTGGCCGAGATGGTTAT 59.241 55.000 0.00 0.00 41.21 1.89
5044 6960 0.325296 AGGTCTGGCCGAGATGGTTA 60.325 55.000 0.00 0.00 43.70 2.85
5045 6961 0.325296 TAGGTCTGGCCGAGATGGTT 60.325 55.000 0.00 0.00 43.70 3.67
5046 6962 0.757188 CTAGGTCTGGCCGAGATGGT 60.757 60.000 1.80 0.00 41.83 3.55
5047 6963 1.467678 CCTAGGTCTGGCCGAGATGG 61.468 65.000 10.19 0.00 41.83 3.51
5048 6964 0.757188 ACCTAGGTCTGGCCGAGATG 60.757 60.000 9.21 0.00 41.83 2.90
5049 6965 0.032017 AACCTAGGTCTGGCCGAGAT 60.032 55.000 16.64 0.00 41.83 2.75
5050 6966 0.252103 AAACCTAGGTCTGGCCGAGA 60.252 55.000 16.64 0.00 41.83 4.04
5051 6967 0.175989 GAAACCTAGGTCTGGCCGAG 59.824 60.000 16.64 0.95 43.70 4.63
5052 6968 1.262640 GGAAACCTAGGTCTGGCCGA 61.263 60.000 16.64 0.00 43.70 5.54
5053 6969 1.221021 GGAAACCTAGGTCTGGCCG 59.779 63.158 16.64 0.00 43.70 6.13
5054 6970 0.919710 ATGGAAACCTAGGTCTGGCC 59.080 55.000 16.64 14.22 37.58 5.36
5055 6971 1.134068 GGATGGAAACCTAGGTCTGGC 60.134 57.143 16.64 4.83 0.00 4.85
5056 6972 1.490910 GGGATGGAAACCTAGGTCTGG 59.509 57.143 16.64 0.00 0.00 3.86
5057 6973 1.139058 CGGGATGGAAACCTAGGTCTG 59.861 57.143 16.64 1.59 0.00 3.51
5058 6974 1.497161 CGGGATGGAAACCTAGGTCT 58.503 55.000 16.64 0.00 0.00 3.85
5059 6975 0.468648 CCGGGATGGAAACCTAGGTC 59.531 60.000 16.64 3.06 42.00 3.85
5060 6976 0.043637 TCCGGGATGGAAACCTAGGT 59.956 55.000 9.21 9.21 46.38 3.08
5061 6977 2.925078 TCCGGGATGGAAACCTAGG 58.075 57.895 7.41 7.41 46.38 3.02
5069 6985 1.305287 TCTCGAGTTCCGGGATGGA 59.695 57.895 13.13 0.00 43.97 3.41
5070 6986 3.935024 TCTCGAGTTCCGGGATGG 58.065 61.111 13.13 0.00 43.97 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.