Multiple sequence alignment - TraesCS1D01G345500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G345500 chr1D 100.000 2562 0 0 1 2562 433510893 433513454 0.000000e+00 4732.0
1 TraesCS1D01G345500 chr1B 86.901 1817 84 35 175 1877 585826704 585828480 0.000000e+00 1895.0
2 TraesCS1D01G345500 chr1B 75.510 196 35 7 2274 2457 47387779 47387973 1.630000e-12 84.2
3 TraesCS1D01G345500 chr1A 86.294 1700 79 60 171 1754 532088664 532090325 0.000000e+00 1707.0
4 TraesCS1D01G345500 chr1A 90.544 349 31 2 2215 2562 532099417 532099764 6.460000e-126 460.0
5 TraesCS1D01G345500 chr1A 83.759 431 50 13 1801 2219 532090399 532090821 8.590000e-105 390.0
6 TraesCS1D01G345500 chr1A 84.916 179 12 7 11 174 532088446 532088624 1.580000e-37 167.0
7 TraesCS1D01G345500 chr3B 85.333 75 10 1 2389 2462 810652482 810652556 2.730000e-10 76.8
8 TraesCS1D01G345500 chr4B 100.000 32 0 0 2272 2303 590136750 590136719 2.750000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G345500 chr1D 433510893 433513454 2561 False 4732.000000 4732 100.000000 1 2562 1 chr1D.!!$F1 2561
1 TraesCS1D01G345500 chr1B 585826704 585828480 1776 False 1895.000000 1895 86.901000 175 1877 1 chr1B.!!$F2 1702
2 TraesCS1D01G345500 chr1A 532088446 532090821 2375 False 754.666667 1707 84.989667 11 2219 3 chr1A.!!$F2 2208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.032815 GATCGTCCTAGGCTCCAAGC 59.967 60.0 2.96 0.0 41.46 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 2217 0.106335 TCGCCCAACGTGGAGTTAAA 59.894 50.0 5.71 0.0 40.96 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.330521 CACCGTGCGAAATGAATAGGG 59.669 52.381 0.00 0.00 0.00 3.53
44 45 0.944386 CCGTGCGAAATGAATAGGGG 59.056 55.000 0.00 0.00 0.00 4.79
80 81 1.109920 GCAGATCGTCCTAGGCTCCA 61.110 60.000 2.96 0.00 0.00 3.86
83 84 0.032815 GATCGTCCTAGGCTCCAAGC 59.967 60.000 2.96 0.00 41.46 4.01
84 85 0.397816 ATCGTCCTAGGCTCCAAGCT 60.398 55.000 2.96 0.00 41.99 3.74
85 86 1.142748 CGTCCTAGGCTCCAAGCTG 59.857 63.158 2.96 0.00 41.99 4.24
95 104 2.003301 GCTCCAAGCTGCTAGTACAAC 58.997 52.381 0.90 0.00 38.45 3.32
119 128 2.464189 CGCACAACGCACGTACTC 59.536 61.111 0.00 0.00 42.60 2.59
120 129 2.014554 CGCACAACGCACGTACTCT 61.015 57.895 0.00 0.00 42.60 3.24
121 130 0.726787 CGCACAACGCACGTACTCTA 60.727 55.000 0.00 0.00 42.60 2.43
123 132 1.665161 GCACAACGCACGTACTCTACT 60.665 52.381 0.00 0.00 41.79 2.57
124 133 2.658285 CACAACGCACGTACTCTACTT 58.342 47.619 0.00 0.00 0.00 2.24
169 228 1.605712 GGGACGTGTTCCTCAGTTCTG 60.606 57.143 0.00 0.00 45.09 3.02
184 243 6.486657 CCTCAGTTCTGATTGACAGGTTTTTA 59.513 38.462 2.89 0.00 45.76 1.52
192 251 9.364989 TCTGATTGACAGGTTTTTAAAACAAAG 57.635 29.630 20.17 12.08 45.76 2.77
194 253 9.364989 TGATTGACAGGTTTTTAAAACAAAGAG 57.635 29.630 20.17 8.54 0.00 2.85
195 254 9.366216 GATTGACAGGTTTTTAAAACAAAGAGT 57.634 29.630 20.17 11.13 0.00 3.24
202 261 9.476202 AGGTTTTTAAAACAAAGAGTATGCATC 57.524 29.630 20.17 0.00 0.00 3.91
315 391 1.304381 AAATGGCCACATGTCCGCT 60.304 52.632 8.16 0.00 37.40 5.52
350 427 1.349627 CGACACATTCCATGCGAGC 59.650 57.895 0.00 0.00 0.00 5.03
419 514 1.930133 ACAGCCCATCCATCACCCA 60.930 57.895 0.00 0.00 0.00 4.51
420 515 1.454479 CAGCCCATCCATCACCCAC 60.454 63.158 0.00 0.00 0.00 4.61
422 517 2.603008 CCCATCCATCACCCACCC 59.397 66.667 0.00 0.00 0.00 4.61
423 518 2.603008 CCATCCATCACCCACCCC 59.397 66.667 0.00 0.00 0.00 4.95
424 519 2.315794 CCATCCATCACCCACCCCA 61.316 63.158 0.00 0.00 0.00 4.96
425 520 1.658053 CCATCCATCACCCACCCCAT 61.658 60.000 0.00 0.00 0.00 4.00
426 521 1.148216 CATCCATCACCCACCCCATA 58.852 55.000 0.00 0.00 0.00 2.74
494 594 4.033709 CCAAAGAGGATAAGACCAGAGGA 58.966 47.826 0.00 0.00 41.22 3.71
496 596 3.322191 AGAGGATAAGACCAGAGGACC 57.678 52.381 0.00 0.00 0.00 4.46
537 646 1.037579 GGAATCCGGGGAAAAGCCAG 61.038 60.000 0.00 0.00 38.95 4.85
538 647 1.667154 GAATCCGGGGAAAAGCCAGC 61.667 60.000 0.00 0.00 38.95 4.85
558 692 3.737172 CCGCCGCTTTTCACCCAG 61.737 66.667 0.00 0.00 0.00 4.45
559 693 2.668212 CGCCGCTTTTCACCCAGA 60.668 61.111 0.00 0.00 0.00 3.86
560 694 2.040544 CGCCGCTTTTCACCCAGAT 61.041 57.895 0.00 0.00 0.00 2.90
561 695 1.803289 GCCGCTTTTCACCCAGATC 59.197 57.895 0.00 0.00 0.00 2.75
574 708 1.478654 CCCAGATCATTAAACCCCGGG 60.479 57.143 15.80 15.80 0.00 5.73
682 833 1.202325 GGTCAAACGGAACCAAACCAC 60.202 52.381 0.00 0.00 0.00 4.16
928 1079 2.170985 CTTCGTGCCGTTTGAGCG 59.829 61.111 0.00 0.00 0.00 5.03
967 1119 4.404098 GCGGCGGAAGAGGGGAAA 62.404 66.667 9.78 0.00 0.00 3.13
989 1146 4.699522 GCCGGGGTTGAGCTCGTT 62.700 66.667 9.64 0.00 0.00 3.85
1007 1164 0.674581 TTGGTTGCCGAGATGAGCTG 60.675 55.000 0.00 0.00 0.00 4.24
1035 1192 2.520741 GGCGAGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1038 1195 2.520741 GAGGAGGAGGAGGAGGCG 60.521 72.222 0.00 0.00 0.00 5.52
1222 1379 0.743345 CCCCGCCAAGTAAGTAGCAC 60.743 60.000 0.00 0.00 0.00 4.40
1227 1384 3.436496 CGCCAAGTAAGTAGCACTACTC 58.564 50.000 10.64 0.21 44.96 2.59
1229 1386 3.430513 GCCAAGTAAGTAGCACTACTCCC 60.431 52.174 10.64 5.00 44.96 4.30
1230 1387 3.181489 CCAAGTAAGTAGCACTACTCCCG 60.181 52.174 10.64 0.00 44.96 5.14
1231 1388 3.362870 AGTAAGTAGCACTACTCCCGT 57.637 47.619 10.64 0.00 44.96 5.28
1232 1389 3.277715 AGTAAGTAGCACTACTCCCGTC 58.722 50.000 10.64 1.58 44.96 4.79
1233 1390 1.472188 AAGTAGCACTACTCCCGTCC 58.528 55.000 10.64 0.00 44.96 4.79
1234 1391 0.395448 AGTAGCACTACTCCCGTCCC 60.395 60.000 4.47 0.00 42.30 4.46
1235 1392 1.452651 TAGCACTACTCCCGTCCCG 60.453 63.158 0.00 0.00 0.00 5.14
1236 1393 1.913951 TAGCACTACTCCCGTCCCGA 61.914 60.000 0.00 0.00 0.00 5.14
1242 1399 4.078516 CTCCCGTCCCGACCAACC 62.079 72.222 0.00 0.00 0.00 3.77
1396 1555 0.036952 TGCAGAAGAAGGAGAAGCCG 60.037 55.000 0.00 0.00 43.43 5.52
1397 1556 1.365368 GCAGAAGAAGGAGAAGCCGC 61.365 60.000 0.00 0.00 43.43 6.53
1398 1557 1.080995 CAGAAGAAGGAGAAGCCGCG 61.081 60.000 0.00 0.00 43.43 6.46
1399 1558 2.435059 AAGAAGGAGAAGCCGCGC 60.435 61.111 0.00 0.00 43.43 6.86
1400 1559 4.803426 AGAAGGAGAAGCCGCGCG 62.803 66.667 25.67 25.67 43.43 6.86
1554 1722 0.456312 GTCAACGAGGACTGCTACCG 60.456 60.000 0.00 0.00 34.92 4.02
1555 1723 1.805945 CAACGAGGACTGCTACCGC 60.806 63.158 0.00 0.00 0.00 5.68
1615 1809 6.176183 CCTCTTAAAATGCTCTTCTTCTCCA 58.824 40.000 0.00 0.00 0.00 3.86
1625 1819 4.502962 CTCTTCTTCTCCATGTCCTTGTC 58.497 47.826 0.00 0.00 0.00 3.18
1627 1821 2.907892 TCTTCTCCATGTCCTTGTCCT 58.092 47.619 0.00 0.00 0.00 3.85
1628 1822 3.251484 TCTTCTCCATGTCCTTGTCCTT 58.749 45.455 0.00 0.00 0.00 3.36
1630 1824 2.338809 TCTCCATGTCCTTGTCCTTGT 58.661 47.619 0.00 0.00 0.00 3.16
1674 1872 3.059733 GTCTGCGAATGATTCATGAGAGC 60.060 47.826 5.95 4.74 0.00 4.09
1789 2049 3.749609 ACTTCTGCGGTGTGTATTTTACC 59.250 43.478 0.00 0.00 0.00 2.85
1790 2050 3.404224 TCTGCGGTGTGTATTTTACCA 57.596 42.857 0.00 0.00 34.10 3.25
1798 2058 5.278561 CGGTGTGTATTTTACCATTTGTGGT 60.279 40.000 5.34 5.34 45.46 4.16
1821 2081 0.249489 CGCAAAGGATACGGGAGGAG 60.249 60.000 0.00 0.00 46.39 3.69
1856 2116 0.516001 GGCTTTCGTCTCCGTTTTCC 59.484 55.000 0.00 0.00 35.01 3.13
1897 2158 2.163818 TTACAGTGTAGCGCTGCTTT 57.836 45.000 25.90 11.45 44.75 3.51
1898 2159 1.428448 TACAGTGTAGCGCTGCTTTG 58.572 50.000 25.90 23.19 44.75 2.77
1901 2162 3.055719 TGTAGCGCTGCTTTGGGC 61.056 61.111 25.90 3.97 44.71 5.36
1910 2171 1.673923 GCTGCTTTGGGCTTGGAATTC 60.674 52.381 0.00 0.00 42.39 2.17
1913 2174 3.929683 TGCTTTGGGCTTGGAATTCCAC 61.930 50.000 27.04 16.01 41.71 4.02
1933 2194 4.326205 CACGTAGATTCTGCAATGTTTCG 58.674 43.478 2.63 0.00 0.00 3.46
1934 2195 4.091365 CACGTAGATTCTGCAATGTTTCGA 59.909 41.667 2.63 0.00 0.00 3.71
1941 2202 2.667969 TCTGCAATGTTTCGATGTCTCG 59.332 45.455 0.00 0.00 46.41 4.04
1943 2204 1.848186 GCAATGTTTCGATGTCTCGCG 60.848 52.381 0.00 0.00 44.65 5.87
1945 2206 1.421410 ATGTTTCGATGTCTCGCGCC 61.421 55.000 0.00 0.00 44.65 6.53
1946 2207 2.878991 TTTCGATGTCTCGCGCCG 60.879 61.111 0.00 0.00 44.65 6.46
1948 2209 4.531912 TCGATGTCTCGCGCCGAC 62.532 66.667 17.74 17.74 44.65 4.79
1949 2210 4.829518 CGATGTCTCGCGCCGACA 62.830 66.667 25.59 25.59 44.59 4.35
1950 2211 3.248171 GATGTCTCGCGCCGACAC 61.248 66.667 25.81 17.95 43.44 3.67
1951 2212 3.685214 GATGTCTCGCGCCGACACT 62.685 63.158 25.81 17.46 43.44 3.55
1953 2214 4.400109 GTCTCGCGCCGACACTCA 62.400 66.667 19.08 0.00 0.00 3.41
1954 2215 3.440415 TCTCGCGCCGACACTCAT 61.440 61.111 0.00 0.00 0.00 2.90
1955 2216 3.250323 CTCGCGCCGACACTCATG 61.250 66.667 0.00 0.00 0.00 3.07
1956 2217 3.971453 CTCGCGCCGACACTCATGT 62.971 63.158 0.00 0.00 43.71 3.21
1968 2234 4.056050 GACACTCATGTTTAACTCCACGT 58.944 43.478 0.00 0.00 39.95 4.49
1973 2239 1.310904 TGTTTAACTCCACGTTGGGC 58.689 50.000 0.00 0.00 38.32 5.36
2102 2373 2.084610 TGAAACTGAGCATGAGGTCG 57.915 50.000 0.00 0.00 45.10 4.79
2105 2376 0.109086 AACTGAGCATGAGGTCGTCG 60.109 55.000 0.00 0.00 45.10 5.12
2116 2387 4.527157 GTCGTCGGTCGGGCGTAG 62.527 72.222 4.24 0.00 40.32 3.51
2130 2401 1.681166 GGCGTAGTCCTCACTGGAGTA 60.681 57.143 0.00 0.00 46.24 2.59
2133 2404 2.039818 TAGTCCTCACTGGAGTAGCG 57.960 55.000 0.00 0.00 46.24 4.26
2134 2405 0.681564 AGTCCTCACTGGAGTAGCGG 60.682 60.000 0.00 0.00 46.24 5.52
2139 2410 2.760385 ACTGGAGTAGCGGAGGGC 60.760 66.667 0.00 0.00 44.05 5.19
2155 2426 2.899838 GCAATGCGGACGGCCATA 60.900 61.111 8.76 0.00 42.61 2.74
2156 2427 2.896801 GCAATGCGGACGGCCATAG 61.897 63.158 8.76 0.00 42.61 2.23
2157 2428 2.591715 AATGCGGACGGCCATAGC 60.592 61.111 8.76 2.55 42.61 2.97
2197 2468 0.174389 CGACATCCCAGTCCAGAGTG 59.826 60.000 0.00 0.00 35.07 3.51
2222 2493 3.908213 GGAGTCTAATCCGCTCTTCATC 58.092 50.000 0.00 0.00 0.00 2.92
2223 2494 3.319405 GGAGTCTAATCCGCTCTTCATCA 59.681 47.826 0.00 0.00 0.00 3.07
2224 2495 4.295051 GAGTCTAATCCGCTCTTCATCAC 58.705 47.826 0.00 0.00 0.00 3.06
2225 2496 3.046390 GTCTAATCCGCTCTTCATCACG 58.954 50.000 0.00 0.00 0.00 4.35
2226 2497 1.789464 CTAATCCGCTCTTCATCACGC 59.211 52.381 0.00 0.00 0.00 5.34
2227 2498 0.811616 AATCCGCTCTTCATCACGCC 60.812 55.000 0.00 0.00 0.00 5.68
2228 2499 2.960957 ATCCGCTCTTCATCACGCCG 62.961 60.000 0.00 0.00 0.00 6.46
2229 2500 3.257561 CGCTCTTCATCACGCCGG 61.258 66.667 0.00 0.00 0.00 6.13
2230 2501 2.184322 GCTCTTCATCACGCCGGA 59.816 61.111 5.05 0.00 0.00 5.14
2231 2502 1.880340 GCTCTTCATCACGCCGGAG 60.880 63.158 5.05 3.72 0.00 4.63
2232 2503 1.809869 CTCTTCATCACGCCGGAGA 59.190 57.895 13.83 2.67 0.00 3.71
2233 2504 0.526524 CTCTTCATCACGCCGGAGAC 60.527 60.000 13.83 0.00 0.00 3.36
2234 2505 1.519455 CTTCATCACGCCGGAGACC 60.519 63.158 13.83 0.00 0.00 3.85
2243 2514 2.835431 CCGGAGACCGCTGGAGAT 60.835 66.667 0.00 0.00 46.86 2.75
2244 2515 2.725008 CGGAGACCGCTGGAGATC 59.275 66.667 0.00 0.00 41.17 2.75
2245 2516 2.725008 GGAGACCGCTGGAGATCG 59.275 66.667 1.50 0.00 0.00 3.69
2246 2517 2.122167 GGAGACCGCTGGAGATCGT 61.122 63.158 1.50 0.00 0.00 3.73
2247 2518 1.357334 GAGACCGCTGGAGATCGTC 59.643 63.158 1.50 0.00 0.00 4.20
2248 2519 2.024871 GACCGCTGGAGATCGTCG 59.975 66.667 1.50 0.00 0.00 5.12
2249 2520 2.437895 ACCGCTGGAGATCGTCGA 60.438 61.111 0.00 0.00 0.00 4.20
2250 2521 1.989966 GACCGCTGGAGATCGTCGAA 61.990 60.000 0.00 0.00 0.00 3.71
2251 2522 1.138883 CCGCTGGAGATCGTCGAAA 59.861 57.895 0.00 0.00 0.00 3.46
2252 2523 0.867753 CCGCTGGAGATCGTCGAAAG 60.868 60.000 0.00 0.00 0.00 2.62
2253 2524 0.179161 CGCTGGAGATCGTCGAAAGT 60.179 55.000 0.00 0.00 0.00 2.66
2254 2525 1.272781 GCTGGAGATCGTCGAAAGTG 58.727 55.000 0.00 0.00 0.00 3.16
2255 2526 1.135373 GCTGGAGATCGTCGAAAGTGA 60.135 52.381 0.00 0.00 0.00 3.41
2256 2527 2.791567 CTGGAGATCGTCGAAAGTGAG 58.208 52.381 0.00 0.00 0.00 3.51
2257 2528 2.160205 TGGAGATCGTCGAAAGTGAGT 58.840 47.619 0.00 0.00 0.00 3.41
2258 2529 2.557056 TGGAGATCGTCGAAAGTGAGTT 59.443 45.455 0.00 0.00 0.00 3.01
2259 2530 3.005472 TGGAGATCGTCGAAAGTGAGTTT 59.995 43.478 0.00 0.00 0.00 2.66
2260 2531 3.365220 GGAGATCGTCGAAAGTGAGTTTG 59.635 47.826 0.00 0.00 0.00 2.93
2261 2532 3.318017 AGATCGTCGAAAGTGAGTTTGG 58.682 45.455 0.00 0.00 0.00 3.28
2262 2533 1.860676 TCGTCGAAAGTGAGTTTGGG 58.139 50.000 0.00 0.00 0.00 4.12
2263 2534 0.865769 CGTCGAAAGTGAGTTTGGGG 59.134 55.000 0.00 0.00 0.00 4.96
2264 2535 1.539496 CGTCGAAAGTGAGTTTGGGGA 60.539 52.381 0.00 0.00 0.00 4.81
2265 2536 2.779506 GTCGAAAGTGAGTTTGGGGAT 58.220 47.619 0.00 0.00 0.00 3.85
2266 2537 2.484264 GTCGAAAGTGAGTTTGGGGATG 59.516 50.000 0.00 0.00 0.00 3.51
2267 2538 2.370519 TCGAAAGTGAGTTTGGGGATGA 59.629 45.455 0.00 0.00 0.00 2.92
2268 2539 3.146066 CGAAAGTGAGTTTGGGGATGAA 58.854 45.455 0.00 0.00 0.00 2.57
2269 2540 3.189287 CGAAAGTGAGTTTGGGGATGAAG 59.811 47.826 0.00 0.00 0.00 3.02
2270 2541 4.398319 GAAAGTGAGTTTGGGGATGAAGA 58.602 43.478 0.00 0.00 0.00 2.87
2271 2542 3.710209 AGTGAGTTTGGGGATGAAGAG 57.290 47.619 0.00 0.00 0.00 2.85
2272 2543 2.307098 AGTGAGTTTGGGGATGAAGAGG 59.693 50.000 0.00 0.00 0.00 3.69
2273 2544 2.305927 GTGAGTTTGGGGATGAAGAGGA 59.694 50.000 0.00 0.00 0.00 3.71
2274 2545 2.986019 TGAGTTTGGGGATGAAGAGGAA 59.014 45.455 0.00 0.00 0.00 3.36
2275 2546 3.009473 TGAGTTTGGGGATGAAGAGGAAG 59.991 47.826 0.00 0.00 0.00 3.46
2276 2547 2.310052 AGTTTGGGGATGAAGAGGAAGG 59.690 50.000 0.00 0.00 0.00 3.46
2277 2548 1.298953 TTGGGGATGAAGAGGAAGGG 58.701 55.000 0.00 0.00 0.00 3.95
2278 2549 0.421495 TGGGGATGAAGAGGAAGGGA 59.579 55.000 0.00 0.00 0.00 4.20
2279 2550 1.135960 GGGGATGAAGAGGAAGGGAG 58.864 60.000 0.00 0.00 0.00 4.30
2280 2551 1.626631 GGGGATGAAGAGGAAGGGAGT 60.627 57.143 0.00 0.00 0.00 3.85
2281 2552 1.488393 GGGATGAAGAGGAAGGGAGTG 59.512 57.143 0.00 0.00 0.00 3.51
2282 2553 1.488393 GGATGAAGAGGAAGGGAGTGG 59.512 57.143 0.00 0.00 0.00 4.00
2283 2554 2.472029 GATGAAGAGGAAGGGAGTGGA 58.528 52.381 0.00 0.00 0.00 4.02
2284 2555 1.944177 TGAAGAGGAAGGGAGTGGAG 58.056 55.000 0.00 0.00 0.00 3.86
2285 2556 1.150135 TGAAGAGGAAGGGAGTGGAGT 59.850 52.381 0.00 0.00 0.00 3.85
2286 2557 1.552792 GAAGAGGAAGGGAGTGGAGTG 59.447 57.143 0.00 0.00 0.00 3.51
2287 2558 0.252467 AGAGGAAGGGAGTGGAGTGG 60.252 60.000 0.00 0.00 0.00 4.00
2288 2559 1.904990 GAGGAAGGGAGTGGAGTGGC 61.905 65.000 0.00 0.00 0.00 5.01
2289 2560 1.920835 GGAAGGGAGTGGAGTGGCT 60.921 63.158 0.00 0.00 0.00 4.75
2290 2561 0.617820 GGAAGGGAGTGGAGTGGCTA 60.618 60.000 0.00 0.00 0.00 3.93
2291 2562 0.827368 GAAGGGAGTGGAGTGGCTAG 59.173 60.000 0.00 0.00 0.00 3.42
2292 2563 0.618968 AAGGGAGTGGAGTGGCTAGG 60.619 60.000 0.00 0.00 0.00 3.02
2293 2564 2.066999 GGGAGTGGAGTGGCTAGGG 61.067 68.421 0.00 0.00 0.00 3.53
2294 2565 1.306226 GGAGTGGAGTGGCTAGGGT 60.306 63.158 0.00 0.00 0.00 4.34
2295 2566 0.910088 GGAGTGGAGTGGCTAGGGTT 60.910 60.000 0.00 0.00 0.00 4.11
2296 2567 0.984995 GAGTGGAGTGGCTAGGGTTT 59.015 55.000 0.00 0.00 0.00 3.27
2297 2568 0.693049 AGTGGAGTGGCTAGGGTTTG 59.307 55.000 0.00 0.00 0.00 2.93
2298 2569 0.690762 GTGGAGTGGCTAGGGTTTGA 59.309 55.000 0.00 0.00 0.00 2.69
2299 2570 1.282157 GTGGAGTGGCTAGGGTTTGAT 59.718 52.381 0.00 0.00 0.00 2.57
2300 2571 1.559682 TGGAGTGGCTAGGGTTTGATC 59.440 52.381 0.00 0.00 0.00 2.92
2301 2572 1.134068 GGAGTGGCTAGGGTTTGATCC 60.134 57.143 0.00 0.00 0.00 3.36
2302 2573 0.541863 AGTGGCTAGGGTTTGATCCG 59.458 55.000 0.00 0.00 0.00 4.18
2303 2574 0.252197 GTGGCTAGGGTTTGATCCGT 59.748 55.000 0.00 0.00 0.00 4.69
2304 2575 0.988832 TGGCTAGGGTTTGATCCGTT 59.011 50.000 0.00 0.00 0.00 4.44
2305 2576 1.065709 TGGCTAGGGTTTGATCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
2306 2577 1.065709 GGCTAGGGTTTGATCCGTTCA 60.066 52.381 0.00 0.00 0.00 3.18
2307 2578 2.280628 GCTAGGGTTTGATCCGTTCAG 58.719 52.381 0.00 0.00 35.27 3.02
2308 2579 2.280628 CTAGGGTTTGATCCGTTCAGC 58.719 52.381 0.00 0.00 35.27 4.26
2309 2580 0.673644 AGGGTTTGATCCGTTCAGCG 60.674 55.000 0.00 0.00 35.27 5.18
2310 2581 0.672401 GGGTTTGATCCGTTCAGCGA 60.672 55.000 0.00 0.00 44.77 4.93
2311 2582 1.153353 GGTTTGATCCGTTCAGCGAA 58.847 50.000 0.00 0.00 44.77 4.70
2312 2583 1.533731 GGTTTGATCCGTTCAGCGAAA 59.466 47.619 0.00 0.00 44.77 3.46
2313 2584 2.412847 GGTTTGATCCGTTCAGCGAAAG 60.413 50.000 0.00 0.00 44.77 2.62
2314 2585 2.448926 TTGATCCGTTCAGCGAAAGA 57.551 45.000 5.98 1.91 44.77 2.52
2315 2586 1.996292 TGATCCGTTCAGCGAAAGAG 58.004 50.000 5.98 0.00 44.77 2.85
2316 2587 1.281899 GATCCGTTCAGCGAAAGAGG 58.718 55.000 5.98 4.85 44.77 3.69
2317 2588 0.895530 ATCCGTTCAGCGAAAGAGGA 59.104 50.000 5.98 8.78 44.77 3.71
2318 2589 0.038526 TCCGTTCAGCGAAAGAGGAC 60.039 55.000 5.98 0.00 44.77 3.85
2319 2590 1.344942 CCGTTCAGCGAAAGAGGACG 61.345 60.000 5.98 0.00 44.77 4.79
2320 2591 0.386858 CGTTCAGCGAAAGAGGACGA 60.387 55.000 0.00 0.00 44.77 4.20
2321 2592 1.779569 GTTCAGCGAAAGAGGACGAA 58.220 50.000 0.00 0.00 0.00 3.85
2322 2593 2.338500 GTTCAGCGAAAGAGGACGAAT 58.662 47.619 0.00 0.00 0.00 3.34
2323 2594 2.737252 GTTCAGCGAAAGAGGACGAATT 59.263 45.455 0.00 0.00 0.00 2.17
2324 2595 3.040147 TCAGCGAAAGAGGACGAATTT 57.960 42.857 0.00 0.00 0.00 1.82
2325 2596 4.182693 TCAGCGAAAGAGGACGAATTTA 57.817 40.909 0.00 0.00 0.00 1.40
2326 2597 4.755411 TCAGCGAAAGAGGACGAATTTAT 58.245 39.130 0.00 0.00 0.00 1.40
2327 2598 5.898174 TCAGCGAAAGAGGACGAATTTATA 58.102 37.500 0.00 0.00 0.00 0.98
2328 2599 6.513180 TCAGCGAAAGAGGACGAATTTATAT 58.487 36.000 0.00 0.00 0.00 0.86
2329 2600 6.420903 TCAGCGAAAGAGGACGAATTTATATG 59.579 38.462 0.00 0.00 0.00 1.78
2330 2601 5.696724 AGCGAAAGAGGACGAATTTATATGG 59.303 40.000 0.00 0.00 0.00 2.74
2331 2602 5.107065 GCGAAAGAGGACGAATTTATATGGG 60.107 44.000 0.00 0.00 0.00 4.00
2332 2603 5.408604 CGAAAGAGGACGAATTTATATGGGG 59.591 44.000 0.00 0.00 0.00 4.96
2333 2604 5.906772 AAGAGGACGAATTTATATGGGGT 57.093 39.130 0.00 0.00 0.00 4.95
2334 2605 5.906772 AGAGGACGAATTTATATGGGGTT 57.093 39.130 0.00 0.00 0.00 4.11
2335 2606 7.383156 AAGAGGACGAATTTATATGGGGTTA 57.617 36.000 0.00 0.00 0.00 2.85
2336 2607 7.005709 AGAGGACGAATTTATATGGGGTTAG 57.994 40.000 0.00 0.00 0.00 2.34
2337 2608 6.013639 AGAGGACGAATTTATATGGGGTTAGG 60.014 42.308 0.00 0.00 0.00 2.69
2338 2609 5.609708 AGGACGAATTTATATGGGGTTAGGT 59.390 40.000 0.00 0.00 0.00 3.08
2339 2610 5.704053 GGACGAATTTATATGGGGTTAGGTG 59.296 44.000 0.00 0.00 0.00 4.00
2340 2611 5.627135 ACGAATTTATATGGGGTTAGGTGG 58.373 41.667 0.00 0.00 0.00 4.61
2341 2612 5.007682 CGAATTTATATGGGGTTAGGTGGG 58.992 45.833 0.00 0.00 0.00 4.61
2342 2613 3.887916 TTTATATGGGGTTAGGTGGGC 57.112 47.619 0.00 0.00 0.00 5.36
2343 2614 1.750022 TATATGGGGTTAGGTGGGCC 58.250 55.000 0.00 0.00 0.00 5.80
2344 2615 0.329039 ATATGGGGTTAGGTGGGCCA 60.329 55.000 0.00 0.00 37.19 5.36
2345 2616 0.991355 TATGGGGTTAGGTGGGCCAG 60.991 60.000 6.40 0.00 37.19 4.85
2346 2617 4.442454 GGGGTTAGGTGGGCCAGC 62.442 72.222 27.81 27.81 37.19 4.85
2347 2618 4.796495 GGGTTAGGTGGGCCAGCG 62.796 72.222 28.36 0.00 36.92 5.18
2348 2619 4.029809 GGTTAGGTGGGCCAGCGT 62.030 66.667 28.36 19.07 36.92 5.07
2349 2620 2.746277 GTTAGGTGGGCCAGCGTG 60.746 66.667 28.36 0.00 36.92 5.34
2350 2621 4.028490 TTAGGTGGGCCAGCGTGG 62.028 66.667 28.36 0.25 41.55 4.94
2357 2628 4.778143 GGCCAGCGTGGACCGAAT 62.778 66.667 0.00 0.00 40.64 3.34
2358 2629 3.195698 GCCAGCGTGGACCGAATC 61.196 66.667 8.04 0.00 40.96 2.52
2367 2638 3.174788 GACCGAATCCAACGTGGC 58.825 61.111 0.00 0.00 37.47 5.01
2368 2639 2.736682 GACCGAATCCAACGTGGCG 61.737 63.158 0.00 0.00 37.47 5.69
2369 2640 3.496131 CCGAATCCAACGTGGCGG 61.496 66.667 0.00 0.00 37.47 6.13
2370 2641 2.433491 CGAATCCAACGTGGCGGA 60.433 61.111 4.28 4.28 37.47 5.54
2371 2642 1.813753 CGAATCCAACGTGGCGGAT 60.814 57.895 8.27 8.27 44.09 4.18
2372 2643 1.721487 GAATCCAACGTGGCGGATG 59.279 57.895 13.48 0.00 41.28 3.51
2373 2644 2.322999 GAATCCAACGTGGCGGATGC 62.323 60.000 13.48 9.09 41.28 3.91
2374 2645 3.620419 ATCCAACGTGGCGGATGCA 62.620 57.895 12.31 0.00 45.35 3.96
2375 2646 4.101790 CCAACGTGGCGGATGCAC 62.102 66.667 0.00 0.00 45.35 4.57
2376 2647 4.101790 CAACGTGGCGGATGCACC 62.102 66.667 0.00 0.00 45.35 5.01
2377 2648 4.329545 AACGTGGCGGATGCACCT 62.330 61.111 0.00 0.00 45.35 4.00
2384 2655 4.864334 CGGATGCACCTGGGCCTC 62.864 72.222 4.53 1.51 36.31 4.70
2385 2656 4.512914 GGATGCACCTGGGCCTCC 62.513 72.222 4.53 12.90 40.56 4.30
2386 2657 3.415087 GATGCACCTGGGCCTCCT 61.415 66.667 4.53 0.00 0.00 3.69
2387 2658 2.943265 ATGCACCTGGGCCTCCTT 60.943 61.111 4.53 0.00 0.00 3.36
2388 2659 1.619363 ATGCACCTGGGCCTCCTTA 60.619 57.895 4.53 0.00 0.00 2.69
2389 2660 0.995675 ATGCACCTGGGCCTCCTTAT 60.996 55.000 4.53 0.00 0.00 1.73
2390 2661 0.327095 TGCACCTGGGCCTCCTTATA 60.327 55.000 4.53 0.00 0.00 0.98
2391 2662 1.068121 GCACCTGGGCCTCCTTATAT 58.932 55.000 4.53 0.00 0.00 0.86
2392 2663 1.003696 GCACCTGGGCCTCCTTATATC 59.996 57.143 4.53 0.00 0.00 1.63
2393 2664 1.630878 CACCTGGGCCTCCTTATATCC 59.369 57.143 4.53 0.00 0.00 2.59
2394 2665 0.905357 CCTGGGCCTCCTTATATCCG 59.095 60.000 4.53 0.00 0.00 4.18
2395 2666 0.250513 CTGGGCCTCCTTATATCCGC 59.749 60.000 4.53 0.00 0.00 5.54
2396 2667 0.178903 TGGGCCTCCTTATATCCGCT 60.179 55.000 4.53 0.00 0.00 5.52
2397 2668 0.537653 GGGCCTCCTTATATCCGCTC 59.462 60.000 0.84 0.00 0.00 5.03
2398 2669 1.267121 GGCCTCCTTATATCCGCTCA 58.733 55.000 0.00 0.00 0.00 4.26
2399 2670 1.623811 GGCCTCCTTATATCCGCTCAA 59.376 52.381 0.00 0.00 0.00 3.02
2400 2671 2.038557 GGCCTCCTTATATCCGCTCAAA 59.961 50.000 0.00 0.00 0.00 2.69
2401 2672 3.307762 GGCCTCCTTATATCCGCTCAAAT 60.308 47.826 0.00 0.00 0.00 2.32
2402 2673 4.327680 GCCTCCTTATATCCGCTCAAATT 58.672 43.478 0.00 0.00 0.00 1.82
2403 2674 4.762251 GCCTCCTTATATCCGCTCAAATTT 59.238 41.667 0.00 0.00 0.00 1.82
2404 2675 5.335191 GCCTCCTTATATCCGCTCAAATTTG 60.335 44.000 12.15 12.15 0.00 2.32
2405 2676 5.182001 CCTCCTTATATCCGCTCAAATTTGG 59.818 44.000 17.90 9.84 0.00 3.28
2406 2677 5.690865 TCCTTATATCCGCTCAAATTTGGT 58.309 37.500 17.90 1.36 0.00 3.67
2407 2678 6.126409 TCCTTATATCCGCTCAAATTTGGTT 58.874 36.000 17.90 0.29 0.00 3.67
2408 2679 6.605594 TCCTTATATCCGCTCAAATTTGGTTT 59.394 34.615 17.90 1.23 0.00 3.27
2409 2680 6.697019 CCTTATATCCGCTCAAATTTGGTTTG 59.303 38.462 17.90 7.50 46.86 2.93
2410 2681 2.810439 TCCGCTCAAATTTGGTTTGG 57.190 45.000 17.90 13.96 45.79 3.28
2411 2682 2.311463 TCCGCTCAAATTTGGTTTGGA 58.689 42.857 17.90 15.78 45.79 3.53
2412 2683 2.896685 TCCGCTCAAATTTGGTTTGGAT 59.103 40.909 17.90 0.00 45.79 3.41
2413 2684 4.082845 TCCGCTCAAATTTGGTTTGGATA 58.917 39.130 17.90 0.00 45.79 2.59
2414 2685 4.082463 TCCGCTCAAATTTGGTTTGGATAC 60.082 41.667 17.90 0.00 45.79 2.24
2426 2697 4.235731 GGATACAAAGGGTGCCGG 57.764 61.111 0.00 0.00 0.00 6.13
2427 2698 1.301954 GGATACAAAGGGTGCCGGT 59.698 57.895 1.90 0.00 0.00 5.28
2428 2699 0.746923 GGATACAAAGGGTGCCGGTC 60.747 60.000 1.90 0.00 0.00 4.79
2429 2700 0.035820 GATACAAAGGGTGCCGGTCA 60.036 55.000 1.90 0.00 0.00 4.02
2430 2701 0.035439 ATACAAAGGGTGCCGGTCAG 60.035 55.000 1.90 0.00 0.00 3.51
2431 2702 2.741486 TACAAAGGGTGCCGGTCAGC 62.741 60.000 16.53 16.53 42.24 4.26
2440 2711 4.436998 CCGGTCAGCCCAGACGTC 62.437 72.222 7.70 7.70 39.42 4.34
2441 2712 3.374402 CGGTCAGCCCAGACGTCT 61.374 66.667 13.58 13.58 39.42 4.18
2442 2713 2.262915 GGTCAGCCCAGACGTCTG 59.737 66.667 33.87 33.87 43.40 3.51
2443 2714 2.276116 GGTCAGCCCAGACGTCTGA 61.276 63.158 40.21 21.76 46.59 3.27
2444 2715 1.214062 GTCAGCCCAGACGTCTGAG 59.786 63.158 40.21 31.44 46.59 3.35
2445 2716 1.979155 TCAGCCCAGACGTCTGAGG 60.979 63.158 40.21 35.62 46.59 3.86
2447 2718 3.386237 GCCCAGACGTCTGAGGCT 61.386 66.667 41.06 16.29 46.97 4.58
2448 2719 2.575993 CCCAGACGTCTGAGGCTG 59.424 66.667 40.21 25.08 46.59 4.85
2449 2720 2.575993 CCAGACGTCTGAGGCTGG 59.424 66.667 40.21 23.43 46.59 4.85
2450 2721 2.279069 CCAGACGTCTGAGGCTGGT 61.279 63.158 40.21 4.63 46.59 4.00
2451 2722 1.668294 CAGACGTCTGAGGCTGGTT 59.332 57.895 36.73 0.00 46.59 3.67
2452 2723 0.034059 CAGACGTCTGAGGCTGGTTT 59.966 55.000 36.73 0.00 46.59 3.27
2453 2724 0.034059 AGACGTCTGAGGCTGGTTTG 59.966 55.000 19.30 0.00 0.00 2.93
2454 2725 0.033504 GACGTCTGAGGCTGGTTTGA 59.966 55.000 8.70 0.00 0.00 2.69
2455 2726 0.034059 ACGTCTGAGGCTGGTTTGAG 59.966 55.000 0.00 0.00 0.00 3.02
2456 2727 0.671781 CGTCTGAGGCTGGTTTGAGG 60.672 60.000 0.00 0.00 0.00 3.86
2457 2728 0.398318 GTCTGAGGCTGGTTTGAGGT 59.602 55.000 0.00 0.00 0.00 3.85
2458 2729 0.397941 TCTGAGGCTGGTTTGAGGTG 59.602 55.000 0.00 0.00 0.00 4.00
2459 2730 1.228245 TGAGGCTGGTTTGAGGTGC 60.228 57.895 0.00 0.00 0.00 5.01
2460 2731 1.973812 GAGGCTGGTTTGAGGTGCC 60.974 63.158 0.00 0.00 43.52 5.01
2461 2732 2.991540 GGCTGGTTTGAGGTGCCC 60.992 66.667 0.00 0.00 37.81 5.36
2462 2733 2.203480 GCTGGTTTGAGGTGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
2463 2734 1.607467 GCTGGTTTGAGGTGCCCAT 60.607 57.895 0.00 0.00 0.00 4.00
2464 2735 1.598701 GCTGGTTTGAGGTGCCCATC 61.599 60.000 0.00 0.00 0.00 3.51
2465 2736 0.038744 CTGGTTTGAGGTGCCCATCT 59.961 55.000 0.00 0.00 0.00 2.90
2466 2737 0.251297 TGGTTTGAGGTGCCCATCTG 60.251 55.000 0.00 0.00 0.00 2.90
2467 2738 0.251341 GGTTTGAGGTGCCCATCTGT 60.251 55.000 0.00 0.00 0.00 3.41
2468 2739 0.883833 GTTTGAGGTGCCCATCTGTG 59.116 55.000 0.00 0.00 0.00 3.66
2469 2740 0.478072 TTTGAGGTGCCCATCTGTGT 59.522 50.000 0.00 0.00 0.00 3.72
2470 2741 0.478072 TTGAGGTGCCCATCTGTGTT 59.522 50.000 0.00 0.00 0.00 3.32
2471 2742 1.357137 TGAGGTGCCCATCTGTGTTA 58.643 50.000 0.00 0.00 0.00 2.41
2472 2743 1.278985 TGAGGTGCCCATCTGTGTTAG 59.721 52.381 0.00 0.00 0.00 2.34
2473 2744 0.620556 AGGTGCCCATCTGTGTTAGG 59.379 55.000 0.00 0.00 0.00 2.69
2474 2745 0.328258 GGTGCCCATCTGTGTTAGGT 59.672 55.000 0.00 0.00 0.00 3.08
2475 2746 1.557832 GGTGCCCATCTGTGTTAGGTA 59.442 52.381 0.00 0.00 0.00 3.08
2476 2747 2.172717 GGTGCCCATCTGTGTTAGGTAT 59.827 50.000 0.00 0.00 0.00 2.73
2477 2748 3.206150 GTGCCCATCTGTGTTAGGTATG 58.794 50.000 0.00 0.00 0.00 2.39
2478 2749 2.843730 TGCCCATCTGTGTTAGGTATGT 59.156 45.455 0.00 0.00 0.00 2.29
2479 2750 3.265737 TGCCCATCTGTGTTAGGTATGTT 59.734 43.478 0.00 0.00 0.00 2.71
2480 2751 4.263727 TGCCCATCTGTGTTAGGTATGTTT 60.264 41.667 0.00 0.00 0.00 2.83
2481 2752 4.096382 GCCCATCTGTGTTAGGTATGTTTG 59.904 45.833 0.00 0.00 0.00 2.93
2482 2753 5.496556 CCCATCTGTGTTAGGTATGTTTGA 58.503 41.667 0.00 0.00 0.00 2.69
2483 2754 5.586243 CCCATCTGTGTTAGGTATGTTTGAG 59.414 44.000 0.00 0.00 0.00 3.02
2484 2755 5.586243 CCATCTGTGTTAGGTATGTTTGAGG 59.414 44.000 0.00 0.00 0.00 3.86
2485 2756 6.406370 CATCTGTGTTAGGTATGTTTGAGGA 58.594 40.000 0.00 0.00 0.00 3.71
2486 2757 6.620877 TCTGTGTTAGGTATGTTTGAGGAT 57.379 37.500 0.00 0.00 0.00 3.24
2487 2758 7.727578 TCTGTGTTAGGTATGTTTGAGGATA 57.272 36.000 0.00 0.00 0.00 2.59
2488 2759 7.553334 TCTGTGTTAGGTATGTTTGAGGATAC 58.447 38.462 0.00 0.00 0.00 2.24
2504 2775 4.408182 GGATACTAGCAAAAGAGGCTGA 57.592 45.455 0.00 0.00 42.62 4.26
2505 2776 4.376146 GGATACTAGCAAAAGAGGCTGAG 58.624 47.826 0.00 0.00 42.62 3.35
2506 2777 4.141824 GGATACTAGCAAAAGAGGCTGAGT 60.142 45.833 0.00 0.00 42.62 3.41
2507 2778 3.778954 ACTAGCAAAAGAGGCTGAGTT 57.221 42.857 0.00 0.00 42.62 3.01
2508 2779 3.406764 ACTAGCAAAAGAGGCTGAGTTG 58.593 45.455 0.00 0.00 42.62 3.16
2509 2780 0.957362 AGCAAAAGAGGCTGAGTTGC 59.043 50.000 14.55 14.55 43.83 4.17
2510 2781 0.670162 GCAAAAGAGGCTGAGTTGCA 59.330 50.000 16.51 0.00 43.17 4.08
2511 2782 1.067516 GCAAAAGAGGCTGAGTTGCAA 59.932 47.619 16.51 0.00 43.17 4.08
2512 2783 2.288640 GCAAAAGAGGCTGAGTTGCAAT 60.289 45.455 16.51 0.00 43.17 3.56
2513 2784 3.314553 CAAAAGAGGCTGAGTTGCAATG 58.685 45.455 0.59 0.00 34.04 2.82
2514 2785 1.542492 AAGAGGCTGAGTTGCAATGG 58.458 50.000 0.59 0.00 34.04 3.16
2515 2786 0.323178 AGAGGCTGAGTTGCAATGGG 60.323 55.000 0.59 0.00 34.04 4.00
2516 2787 0.322816 GAGGCTGAGTTGCAATGGGA 60.323 55.000 0.59 0.00 34.04 4.37
2517 2788 0.323178 AGGCTGAGTTGCAATGGGAG 60.323 55.000 0.59 0.00 34.04 4.30
2518 2789 0.322816 GGCTGAGTTGCAATGGGAGA 60.323 55.000 0.59 0.00 34.04 3.71
2519 2790 1.538047 GCTGAGTTGCAATGGGAGAA 58.462 50.000 0.59 0.00 0.00 2.87
2520 2791 1.888512 GCTGAGTTGCAATGGGAGAAA 59.111 47.619 0.59 0.00 0.00 2.52
2521 2792 2.297033 GCTGAGTTGCAATGGGAGAAAA 59.703 45.455 0.59 0.00 0.00 2.29
2522 2793 3.613432 GCTGAGTTGCAATGGGAGAAAAG 60.613 47.826 0.59 0.00 0.00 2.27
2523 2794 2.892852 TGAGTTGCAATGGGAGAAAAGG 59.107 45.455 0.59 0.00 0.00 3.11
2524 2795 3.157087 GAGTTGCAATGGGAGAAAAGGA 58.843 45.455 0.59 0.00 0.00 3.36
2525 2796 3.766051 GAGTTGCAATGGGAGAAAAGGAT 59.234 43.478 0.59 0.00 0.00 3.24
2526 2797 4.934356 AGTTGCAATGGGAGAAAAGGATA 58.066 39.130 0.59 0.00 0.00 2.59
2527 2798 4.952335 AGTTGCAATGGGAGAAAAGGATAG 59.048 41.667 0.59 0.00 0.00 2.08
2528 2799 3.290710 TGCAATGGGAGAAAAGGATAGC 58.709 45.455 0.00 0.00 0.00 2.97
2529 2800 3.053395 TGCAATGGGAGAAAAGGATAGCT 60.053 43.478 0.00 0.00 0.00 3.32
2530 2801 3.567585 GCAATGGGAGAAAAGGATAGCTC 59.432 47.826 0.00 0.00 0.00 4.09
2531 2802 4.785301 CAATGGGAGAAAAGGATAGCTCA 58.215 43.478 0.00 0.00 0.00 4.26
2532 2803 5.383476 CAATGGGAGAAAAGGATAGCTCAT 58.617 41.667 0.00 0.00 0.00 2.90
2533 2804 4.428294 TGGGAGAAAAGGATAGCTCATG 57.572 45.455 0.00 0.00 0.00 3.07
2534 2805 3.145286 GGGAGAAAAGGATAGCTCATGC 58.855 50.000 0.00 0.00 40.05 4.06
2535 2806 3.145286 GGAGAAAAGGATAGCTCATGCC 58.855 50.000 0.00 0.00 40.80 4.40
2536 2807 3.145286 GAGAAAAGGATAGCTCATGCCC 58.855 50.000 0.00 0.00 40.80 5.36
2537 2808 2.511218 AGAAAAGGATAGCTCATGCCCA 59.489 45.455 0.00 0.00 40.80 5.36
2538 2809 3.053395 AGAAAAGGATAGCTCATGCCCAA 60.053 43.478 0.00 0.00 40.80 4.12
2539 2810 3.607490 AAAGGATAGCTCATGCCCAAT 57.393 42.857 0.00 0.00 40.80 3.16
2540 2811 2.875094 AGGATAGCTCATGCCCAATC 57.125 50.000 0.00 0.00 40.80 2.67
2541 2812 2.060275 AGGATAGCTCATGCCCAATCA 58.940 47.619 0.00 0.00 40.80 2.57
2542 2813 2.648304 AGGATAGCTCATGCCCAATCAT 59.352 45.455 0.00 0.00 40.80 2.45
2543 2814 2.753452 GGATAGCTCATGCCCAATCATG 59.247 50.000 0.00 0.00 43.84 3.07
2550 2821 4.929819 TCATGCCCAATCATGAATCAAG 57.070 40.909 0.00 0.00 46.84 3.02
2551 2822 4.538738 TCATGCCCAATCATGAATCAAGA 58.461 39.130 0.00 0.00 46.84 3.02
2552 2823 4.340097 TCATGCCCAATCATGAATCAAGAC 59.660 41.667 0.00 0.00 46.84 3.01
2553 2824 3.025978 TGCCCAATCATGAATCAAGACC 58.974 45.455 0.00 0.00 0.00 3.85
2554 2825 2.363359 GCCCAATCATGAATCAAGACCC 59.637 50.000 0.00 0.00 0.00 4.46
2555 2826 2.961062 CCCAATCATGAATCAAGACCCC 59.039 50.000 0.00 0.00 0.00 4.95
2556 2827 3.628002 CCCAATCATGAATCAAGACCCCA 60.628 47.826 0.00 0.00 0.00 4.96
2557 2828 4.025360 CCAATCATGAATCAAGACCCCAA 58.975 43.478 0.00 0.00 0.00 4.12
2558 2829 4.652421 CCAATCATGAATCAAGACCCCAAT 59.348 41.667 0.00 0.00 0.00 3.16
2559 2830 5.834742 CCAATCATGAATCAAGACCCCAATA 59.165 40.000 0.00 0.00 0.00 1.90
2560 2831 6.015688 CCAATCATGAATCAAGACCCCAATAG 60.016 42.308 0.00 0.00 0.00 1.73
2561 2832 5.974156 TCATGAATCAAGACCCCAATAGA 57.026 39.130 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.441164 GCGCTCTCCTCCTCTGGA 60.441 66.667 0.00 0.00 34.52 3.86
5 6 3.898509 CGCGCTCTCCTCCTCTGG 61.899 72.222 5.56 0.00 0.00 3.86
6 7 4.567385 GCGCGCTCTCCTCCTCTG 62.567 72.222 26.67 0.00 0.00 3.35
8 9 4.863925 GTGCGCGCTCTCCTCCTC 62.864 72.222 33.29 7.28 0.00 3.71
55 56 1.381191 TAGGACGATCTGCCAGCCA 60.381 57.895 0.00 0.00 0.00 4.75
59 60 1.075970 AGCCTAGGACGATCTGCCA 60.076 57.895 14.75 0.00 0.00 4.92
83 84 1.726853 GGTGGCTGTTGTACTAGCAG 58.273 55.000 15.64 11.58 41.63 4.24
84 85 0.037697 CGGTGGCTGTTGTACTAGCA 60.038 55.000 15.64 3.05 41.63 3.49
85 86 1.359459 GCGGTGGCTGTTGTACTAGC 61.359 60.000 8.28 8.28 39.17 3.42
119 128 4.530857 CAGCCGGGCGGGAAGTAG 62.531 72.222 16.19 0.00 38.47 2.57
158 174 3.242867 ACCTGTCAATCAGAACTGAGGA 58.757 45.455 10.26 7.55 46.27 3.71
161 177 7.873719 TTAAAAACCTGTCAATCAGAACTGA 57.126 32.000 6.98 6.98 46.27 3.41
169 228 9.366216 ACTCTTTGTTTTAAAAACCTGTCAATC 57.634 29.630 1.31 0.00 0.00 2.67
184 243 9.768662 AAAAAGATGATGCATACTCTTTGTTTT 57.231 25.926 25.29 17.55 37.84 2.43
208 267 1.529438 GCGAGAACGACCACATGAAAA 59.471 47.619 0.00 0.00 42.66 2.29
315 391 4.923871 TGTGTCGCTTTTAAAACTTTTGCA 59.076 33.333 9.08 0.00 0.00 4.08
436 531 1.078115 TGGATCATGGATGGATGGGG 58.922 55.000 0.00 0.00 0.00 4.96
515 624 1.374343 GCTTTTCCCCGGATTCCGTC 61.374 60.000 22.83 0.00 46.80 4.79
541 671 3.737172 CTGGGTGAAAAGCGGCGG 61.737 66.667 9.78 0.00 0.00 6.13
543 673 0.960364 TGATCTGGGTGAAAAGCGGC 60.960 55.000 0.00 0.00 0.00 6.53
557 691 0.185175 GGCCCGGGGTTTAATGATCT 59.815 55.000 25.28 0.00 0.00 2.75
558 692 1.170290 CGGCCCGGGGTTTAATGATC 61.170 60.000 25.28 0.00 0.00 2.92
559 693 1.152839 CGGCCCGGGGTTTAATGAT 60.153 57.895 25.28 0.00 0.00 2.45
560 694 2.272797 CGGCCCGGGGTTTAATGA 59.727 61.111 25.28 0.00 0.00 2.57
561 695 2.044749 ACGGCCCGGGGTTTAATG 60.045 61.111 25.28 0.00 0.00 1.90
659 805 1.605232 GTTTGGTTCCGTTTGACCGAT 59.395 47.619 0.00 0.00 38.81 4.18
880 1031 2.515901 GCAGTGGTTGGTCCCTGT 59.484 61.111 0.00 0.00 37.07 4.00
986 1143 1.970917 GCTCATCTCGGCAACCAACG 61.971 60.000 0.00 0.00 0.00 4.10
987 1144 0.674895 AGCTCATCTCGGCAACCAAC 60.675 55.000 0.00 0.00 0.00 3.77
988 1145 0.674581 CAGCTCATCTCGGCAACCAA 60.675 55.000 0.00 0.00 0.00 3.67
989 1146 1.078918 CAGCTCATCTCGGCAACCA 60.079 57.895 0.00 0.00 0.00 3.67
1007 1164 2.281345 CCTCGCCCATCATCCTGC 60.281 66.667 0.00 0.00 0.00 4.85
1038 1195 2.504244 CAGGACGACGCCTCGAAC 60.504 66.667 12.14 4.24 43.06 3.95
1230 1387 2.353323 GATAAGTTGGTTGGTCGGGAC 58.647 52.381 0.00 0.00 0.00 4.46
1231 1388 1.279846 GGATAAGTTGGTTGGTCGGGA 59.720 52.381 0.00 0.00 0.00 5.14
1232 1389 1.746470 GGATAAGTTGGTTGGTCGGG 58.254 55.000 0.00 0.00 0.00 5.14
1233 1390 1.338389 ACGGATAAGTTGGTTGGTCGG 60.338 52.381 0.00 0.00 0.00 4.79
1234 1391 1.997606 GACGGATAAGTTGGTTGGTCG 59.002 52.381 0.00 0.00 0.00 4.79
1235 1392 1.997606 CGACGGATAAGTTGGTTGGTC 59.002 52.381 0.00 0.00 0.00 4.02
1236 1393 1.619827 TCGACGGATAAGTTGGTTGGT 59.380 47.619 0.00 0.00 0.00 3.67
1273 1430 2.749621 CAGCCAGATCGTTAGCCTTTTT 59.250 45.455 0.00 0.00 0.00 1.94
1515 1674 1.728490 GGGGATGTTCATGAAGCCGC 61.728 60.000 8.80 14.48 0.00 6.53
1554 1722 3.646736 ATAAACCCTGAACCTACTGGC 57.353 47.619 0.00 0.00 36.63 4.85
1555 1723 5.816682 AGAAATAAACCCTGAACCTACTGG 58.183 41.667 0.00 0.00 39.83 4.00
1615 1809 2.624838 CAAGCAACAAGGACAAGGACAT 59.375 45.455 0.00 0.00 0.00 3.06
1625 1819 1.574134 CCTGCAAACAAGCAACAAGG 58.426 50.000 0.00 0.00 45.13 3.61
1627 1821 0.805322 CGCCTGCAAACAAGCAACAA 60.805 50.000 0.00 0.00 45.13 2.83
1628 1822 1.226916 CGCCTGCAAACAAGCAACA 60.227 52.632 0.00 0.00 45.13 3.33
1630 1824 2.279385 GCGCCTGCAAACAAGCAA 60.279 55.556 0.00 0.00 45.13 3.91
1789 2049 1.411394 CTTTGCGCTGACCACAAATG 58.589 50.000 9.73 0.00 33.19 2.32
1790 2050 0.314935 CCTTTGCGCTGACCACAAAT 59.685 50.000 9.73 0.00 33.19 2.32
1798 2058 1.153449 CCCGTATCCTTTGCGCTGA 60.153 57.895 9.73 0.00 31.38 4.26
1828 2088 1.139947 GACGAAAGCCCTCTCTCCG 59.860 63.158 0.00 0.00 0.00 4.63
1877 2138 2.386661 AAGCAGCGCTACACTGTAAT 57.613 45.000 10.99 0.00 38.25 1.89
1910 2171 4.651994 GAAACATTGCAGAATCTACGTGG 58.348 43.478 0.00 0.00 0.00 4.94
1913 2174 4.840401 TCGAAACATTGCAGAATCTACG 57.160 40.909 0.00 0.00 0.00 3.51
1933 2194 3.248171 GTGTCGGCGCGAGACATC 61.248 66.667 30.40 22.16 46.80 3.06
1941 2202 0.793861 TTAAACATGAGTGTCGGCGC 59.206 50.000 0.00 0.00 37.67 6.53
1943 2204 2.415512 GGAGTTAAACATGAGTGTCGGC 59.584 50.000 0.00 0.00 37.67 5.54
1945 2206 3.121279 CGTGGAGTTAAACATGAGTGTCG 59.879 47.826 0.00 0.00 37.67 4.35
1946 2207 4.056050 ACGTGGAGTTAAACATGAGTGTC 58.944 43.478 0.00 0.00 37.67 3.67
1948 2209 4.319477 CCAACGTGGAGTTAAACATGAGTG 60.319 45.833 0.00 0.00 40.96 3.51
1949 2210 3.813166 CCAACGTGGAGTTAAACATGAGT 59.187 43.478 0.00 0.00 40.96 3.41
1950 2211 3.188460 CCCAACGTGGAGTTAAACATGAG 59.812 47.826 0.00 0.00 40.96 2.90
1951 2212 3.142951 CCCAACGTGGAGTTAAACATGA 58.857 45.455 0.00 0.00 40.96 3.07
1953 2214 1.883926 GCCCAACGTGGAGTTAAACAT 59.116 47.619 5.71 0.00 40.96 2.71
1954 2215 1.310904 GCCCAACGTGGAGTTAAACA 58.689 50.000 5.71 0.00 40.96 2.83
1955 2216 0.236449 CGCCCAACGTGGAGTTAAAC 59.764 55.000 5.71 0.00 40.96 2.01
1956 2217 0.106335 TCGCCCAACGTGGAGTTAAA 59.894 50.000 5.71 0.00 40.96 1.52
1968 2234 4.855715 TTTGATAACAATTGTCGCCCAA 57.144 36.364 12.39 10.80 35.85 4.12
1973 2239 7.561237 AAACGGAATTTGATAACAATTGTCG 57.439 32.000 12.39 9.29 35.85 4.35
1974 2240 9.400638 TGTAAACGGAATTTGATAACAATTGTC 57.599 29.630 12.39 0.00 35.85 3.18
2082 2353 2.224281 ACGACCTCATGCTCAGTTTCAA 60.224 45.455 0.00 0.00 0.00 2.69
2088 2359 1.226802 CCGACGACCTCATGCTCAG 60.227 63.158 0.00 0.00 0.00 3.35
2102 2373 4.185059 GGACTACGCCCGACCGAC 62.185 72.222 1.78 0.00 0.00 4.79
2105 2376 2.753043 TGAGGACTACGCCCGACC 60.753 66.667 0.00 0.00 0.00 4.79
2113 2384 1.671845 CGCTACTCCAGTGAGGACTAC 59.328 57.143 0.00 0.00 43.07 2.73
2114 2385 1.408405 CCGCTACTCCAGTGAGGACTA 60.408 57.143 0.00 0.00 43.07 2.59
2116 2387 0.680280 TCCGCTACTCCAGTGAGGAC 60.680 60.000 0.00 0.00 43.07 3.85
2122 2393 2.760385 GCCCTCCGCTACTCCAGT 60.760 66.667 0.00 0.00 0.00 4.00
2123 2394 1.690219 ATTGCCCTCCGCTACTCCAG 61.690 60.000 0.00 0.00 38.78 3.86
2124 2395 1.689233 ATTGCCCTCCGCTACTCCA 60.689 57.895 0.00 0.00 38.78 3.86
2129 2400 4.545706 CCGCATTGCCCTCCGCTA 62.546 66.667 2.41 0.00 38.78 4.26
2139 2410 2.896801 GCTATGGCCGTCCGCATTG 61.897 63.158 0.00 0.00 40.31 2.82
2155 2426 2.074948 ATGCGGGATGGAGAAGGCT 61.075 57.895 0.00 0.00 0.00 4.58
2156 2427 1.895707 CATGCGGGATGGAGAAGGC 60.896 63.158 0.98 0.00 0.00 4.35
2157 2428 4.469883 CATGCGGGATGGAGAAGG 57.530 61.111 0.98 0.00 0.00 3.46
2182 2453 0.972983 CGACCACTCTGGACTGGGAT 60.973 60.000 0.00 0.00 40.96 3.85
2184 2455 2.650116 CCGACCACTCTGGACTGGG 61.650 68.421 0.00 0.00 40.96 4.45
2228 2499 2.065906 GACGATCTCCAGCGGTCTCC 62.066 65.000 0.00 0.00 0.00 3.71
2229 2500 1.357334 GACGATCTCCAGCGGTCTC 59.643 63.158 0.00 0.00 0.00 3.36
2230 2501 2.473760 CGACGATCTCCAGCGGTCT 61.474 63.158 0.00 0.00 0.00 3.85
2231 2502 1.989966 TTCGACGATCTCCAGCGGTC 61.990 60.000 0.00 0.00 0.00 4.79
2232 2503 1.592400 TTTCGACGATCTCCAGCGGT 61.592 55.000 0.00 0.00 0.00 5.68
2233 2504 0.867753 CTTTCGACGATCTCCAGCGG 60.868 60.000 0.00 0.00 0.00 5.52
2234 2505 0.179161 ACTTTCGACGATCTCCAGCG 60.179 55.000 0.00 0.00 0.00 5.18
2235 2506 1.135373 TCACTTTCGACGATCTCCAGC 60.135 52.381 0.00 0.00 0.00 4.85
2236 2507 2.162608 ACTCACTTTCGACGATCTCCAG 59.837 50.000 0.00 0.00 0.00 3.86
2237 2508 2.160205 ACTCACTTTCGACGATCTCCA 58.840 47.619 0.00 0.00 0.00 3.86
2238 2509 2.923605 ACTCACTTTCGACGATCTCC 57.076 50.000 0.00 0.00 0.00 3.71
2239 2510 3.365220 CCAAACTCACTTTCGACGATCTC 59.635 47.826 0.00 0.00 0.00 2.75
2240 2511 3.318017 CCAAACTCACTTTCGACGATCT 58.682 45.455 0.00 0.00 0.00 2.75
2241 2512 2.412089 CCCAAACTCACTTTCGACGATC 59.588 50.000 0.00 0.00 0.00 3.69
2242 2513 2.413837 CCCAAACTCACTTTCGACGAT 58.586 47.619 0.00 0.00 0.00 3.73
2243 2514 1.539496 CCCCAAACTCACTTTCGACGA 60.539 52.381 0.00 0.00 0.00 4.20
2244 2515 0.865769 CCCCAAACTCACTTTCGACG 59.134 55.000 0.00 0.00 0.00 5.12
2245 2516 2.249844 TCCCCAAACTCACTTTCGAC 57.750 50.000 0.00 0.00 0.00 4.20
2246 2517 2.370519 TCATCCCCAAACTCACTTTCGA 59.629 45.455 0.00 0.00 0.00 3.71
2247 2518 2.778299 TCATCCCCAAACTCACTTTCG 58.222 47.619 0.00 0.00 0.00 3.46
2248 2519 4.398319 TCTTCATCCCCAAACTCACTTTC 58.602 43.478 0.00 0.00 0.00 2.62
2249 2520 4.401925 CTCTTCATCCCCAAACTCACTTT 58.598 43.478 0.00 0.00 0.00 2.66
2250 2521 3.245052 CCTCTTCATCCCCAAACTCACTT 60.245 47.826 0.00 0.00 0.00 3.16
2251 2522 2.307098 CCTCTTCATCCCCAAACTCACT 59.693 50.000 0.00 0.00 0.00 3.41
2252 2523 2.305927 TCCTCTTCATCCCCAAACTCAC 59.694 50.000 0.00 0.00 0.00 3.51
2253 2524 2.631384 TCCTCTTCATCCCCAAACTCA 58.369 47.619 0.00 0.00 0.00 3.41
2254 2525 3.615155 CTTCCTCTTCATCCCCAAACTC 58.385 50.000 0.00 0.00 0.00 3.01
2255 2526 2.310052 CCTTCCTCTTCATCCCCAAACT 59.690 50.000 0.00 0.00 0.00 2.66
2256 2527 2.621668 CCCTTCCTCTTCATCCCCAAAC 60.622 54.545 0.00 0.00 0.00 2.93
2257 2528 1.640670 CCCTTCCTCTTCATCCCCAAA 59.359 52.381 0.00 0.00 0.00 3.28
2258 2529 1.203557 TCCCTTCCTCTTCATCCCCAA 60.204 52.381 0.00 0.00 0.00 4.12
2259 2530 0.421495 TCCCTTCCTCTTCATCCCCA 59.579 55.000 0.00 0.00 0.00 4.96
2260 2531 1.135960 CTCCCTTCCTCTTCATCCCC 58.864 60.000 0.00 0.00 0.00 4.81
2261 2532 1.488393 CACTCCCTTCCTCTTCATCCC 59.512 57.143 0.00 0.00 0.00 3.85
2262 2533 1.488393 CCACTCCCTTCCTCTTCATCC 59.512 57.143 0.00 0.00 0.00 3.51
2263 2534 2.433970 CTCCACTCCCTTCCTCTTCATC 59.566 54.545 0.00 0.00 0.00 2.92
2264 2535 2.225753 ACTCCACTCCCTTCCTCTTCAT 60.226 50.000 0.00 0.00 0.00 2.57
2265 2536 1.150135 ACTCCACTCCCTTCCTCTTCA 59.850 52.381 0.00 0.00 0.00 3.02
2266 2537 1.552792 CACTCCACTCCCTTCCTCTTC 59.447 57.143 0.00 0.00 0.00 2.87
2267 2538 1.650528 CACTCCACTCCCTTCCTCTT 58.349 55.000 0.00 0.00 0.00 2.85
2268 2539 0.252467 CCACTCCACTCCCTTCCTCT 60.252 60.000 0.00 0.00 0.00 3.69
2269 2540 1.904990 GCCACTCCACTCCCTTCCTC 61.905 65.000 0.00 0.00 0.00 3.71
2270 2541 1.920835 GCCACTCCACTCCCTTCCT 60.921 63.158 0.00 0.00 0.00 3.36
2271 2542 0.617820 TAGCCACTCCACTCCCTTCC 60.618 60.000 0.00 0.00 0.00 3.46
2272 2543 0.827368 CTAGCCACTCCACTCCCTTC 59.173 60.000 0.00 0.00 0.00 3.46
2273 2544 0.618968 CCTAGCCACTCCACTCCCTT 60.619 60.000 0.00 0.00 0.00 3.95
2274 2545 1.002274 CCTAGCCACTCCACTCCCT 59.998 63.158 0.00 0.00 0.00 4.20
2275 2546 2.066999 CCCTAGCCACTCCACTCCC 61.067 68.421 0.00 0.00 0.00 4.30
2276 2547 0.910088 AACCCTAGCCACTCCACTCC 60.910 60.000 0.00 0.00 0.00 3.85
2277 2548 0.984995 AAACCCTAGCCACTCCACTC 59.015 55.000 0.00 0.00 0.00 3.51
2278 2549 0.693049 CAAACCCTAGCCACTCCACT 59.307 55.000 0.00 0.00 0.00 4.00
2279 2550 0.690762 TCAAACCCTAGCCACTCCAC 59.309 55.000 0.00 0.00 0.00 4.02
2280 2551 1.559682 GATCAAACCCTAGCCACTCCA 59.440 52.381 0.00 0.00 0.00 3.86
2281 2552 1.134068 GGATCAAACCCTAGCCACTCC 60.134 57.143 0.00 0.00 0.00 3.85
2282 2553 1.473434 CGGATCAAACCCTAGCCACTC 60.473 57.143 0.00 0.00 0.00 3.51
2283 2554 0.541863 CGGATCAAACCCTAGCCACT 59.458 55.000 0.00 0.00 0.00 4.00
2284 2555 0.252197 ACGGATCAAACCCTAGCCAC 59.748 55.000 0.00 0.00 0.00 5.01
2285 2556 0.988832 AACGGATCAAACCCTAGCCA 59.011 50.000 0.00 0.00 0.00 4.75
2286 2557 1.065709 TGAACGGATCAAACCCTAGCC 60.066 52.381 0.00 0.00 34.30 3.93
2287 2558 2.280628 CTGAACGGATCAAACCCTAGC 58.719 52.381 0.00 0.00 37.67 3.42
2288 2559 2.280628 GCTGAACGGATCAAACCCTAG 58.719 52.381 0.00 0.00 37.67 3.02
2289 2560 1.404986 CGCTGAACGGATCAAACCCTA 60.405 52.381 0.00 0.00 37.67 3.53
2290 2561 0.673644 CGCTGAACGGATCAAACCCT 60.674 55.000 0.00 0.00 37.67 4.34
2291 2562 0.672401 TCGCTGAACGGATCAAACCC 60.672 55.000 0.00 0.00 43.89 4.11
2292 2563 1.153353 TTCGCTGAACGGATCAAACC 58.847 50.000 0.00 0.00 43.89 3.27
2293 2564 2.478894 TCTTTCGCTGAACGGATCAAAC 59.521 45.455 0.00 0.00 43.89 2.93
2294 2565 2.736721 CTCTTTCGCTGAACGGATCAAA 59.263 45.455 0.00 0.00 43.89 2.69
2295 2566 2.337583 CTCTTTCGCTGAACGGATCAA 58.662 47.619 0.00 0.00 43.89 2.57
2296 2567 1.404181 CCTCTTTCGCTGAACGGATCA 60.404 52.381 0.00 0.00 43.89 2.92
2297 2568 1.135083 TCCTCTTTCGCTGAACGGATC 60.135 52.381 0.00 0.00 43.89 3.36
2298 2569 0.895530 TCCTCTTTCGCTGAACGGAT 59.104 50.000 0.00 0.00 43.89 4.18
2299 2570 0.038526 GTCCTCTTTCGCTGAACGGA 60.039 55.000 0.00 0.00 43.89 4.69
2300 2571 1.344942 CGTCCTCTTTCGCTGAACGG 61.345 60.000 0.00 0.00 43.89 4.44
2301 2572 0.386858 TCGTCCTCTTTCGCTGAACG 60.387 55.000 0.00 0.00 45.62 3.95
2302 2573 1.779569 TTCGTCCTCTTTCGCTGAAC 58.220 50.000 0.00 0.00 0.00 3.18
2303 2574 2.743636 ATTCGTCCTCTTTCGCTGAA 57.256 45.000 0.00 0.00 0.00 3.02
2304 2575 2.743636 AATTCGTCCTCTTTCGCTGA 57.256 45.000 0.00 0.00 0.00 4.26
2305 2576 6.346919 CCATATAAATTCGTCCTCTTTCGCTG 60.347 42.308 0.00 0.00 0.00 5.18
2306 2577 5.696724 CCATATAAATTCGTCCTCTTTCGCT 59.303 40.000 0.00 0.00 0.00 4.93
2307 2578 5.107065 CCCATATAAATTCGTCCTCTTTCGC 60.107 44.000 0.00 0.00 0.00 4.70
2308 2579 5.408604 CCCCATATAAATTCGTCCTCTTTCG 59.591 44.000 0.00 0.00 0.00 3.46
2309 2580 6.296803 ACCCCATATAAATTCGTCCTCTTTC 58.703 40.000 0.00 0.00 0.00 2.62
2310 2581 6.262056 ACCCCATATAAATTCGTCCTCTTT 57.738 37.500 0.00 0.00 0.00 2.52
2311 2582 5.906772 ACCCCATATAAATTCGTCCTCTT 57.093 39.130 0.00 0.00 0.00 2.85
2312 2583 5.906772 AACCCCATATAAATTCGTCCTCT 57.093 39.130 0.00 0.00 0.00 3.69
2313 2584 6.171213 CCTAACCCCATATAAATTCGTCCTC 58.829 44.000 0.00 0.00 0.00 3.71
2314 2585 5.609708 ACCTAACCCCATATAAATTCGTCCT 59.390 40.000 0.00 0.00 0.00 3.85
2315 2586 5.704053 CACCTAACCCCATATAAATTCGTCC 59.296 44.000 0.00 0.00 0.00 4.79
2316 2587 5.704053 CCACCTAACCCCATATAAATTCGTC 59.296 44.000 0.00 0.00 0.00 4.20
2317 2588 5.457052 CCCACCTAACCCCATATAAATTCGT 60.457 44.000 0.00 0.00 0.00 3.85
2318 2589 5.007682 CCCACCTAACCCCATATAAATTCG 58.992 45.833 0.00 0.00 0.00 3.34
2319 2590 4.770531 GCCCACCTAACCCCATATAAATTC 59.229 45.833 0.00 0.00 0.00 2.17
2320 2591 4.450117 GGCCCACCTAACCCCATATAAATT 60.450 45.833 0.00 0.00 0.00 1.82
2321 2592 3.076937 GGCCCACCTAACCCCATATAAAT 59.923 47.826 0.00 0.00 0.00 1.40
2322 2593 2.447811 GGCCCACCTAACCCCATATAAA 59.552 50.000 0.00 0.00 0.00 1.40
2323 2594 2.067386 GGCCCACCTAACCCCATATAA 58.933 52.381 0.00 0.00 0.00 0.98
2324 2595 1.060482 TGGCCCACCTAACCCCATATA 60.060 52.381 0.00 0.00 36.63 0.86
2325 2596 0.329039 TGGCCCACCTAACCCCATAT 60.329 55.000 0.00 0.00 36.63 1.78
2326 2597 0.991355 CTGGCCCACCTAACCCCATA 60.991 60.000 0.00 0.00 36.63 2.74
2327 2598 2.204385 TGGCCCACCTAACCCCAT 60.204 61.111 0.00 0.00 36.63 4.00
2328 2599 2.938798 CTGGCCCACCTAACCCCA 60.939 66.667 0.00 0.00 36.63 4.96
2329 2600 4.442454 GCTGGCCCACCTAACCCC 62.442 72.222 0.00 0.00 36.63 4.95
2330 2601 4.796495 CGCTGGCCCACCTAACCC 62.796 72.222 0.00 0.00 36.63 4.11
2331 2602 4.029809 ACGCTGGCCCACCTAACC 62.030 66.667 0.00 0.00 36.63 2.85
2332 2603 2.746277 CACGCTGGCCCACCTAAC 60.746 66.667 0.00 0.00 36.63 2.34
2333 2604 4.028490 CCACGCTGGCCCACCTAA 62.028 66.667 0.00 0.00 36.63 2.69
2340 2611 4.778143 ATTCGGTCCACGCTGGCC 62.778 66.667 0.00 0.00 43.86 5.36
2341 2612 3.195698 GATTCGGTCCACGCTGGC 61.196 66.667 0.00 0.00 43.86 4.85
2342 2613 2.511600 GGATTCGGTCCACGCTGG 60.512 66.667 3.29 0.00 46.96 4.85
2350 2621 2.736682 CGCCACGTTGGATTCGGTC 61.737 63.158 8.04 0.00 40.96 4.79
2351 2622 2.740826 CGCCACGTTGGATTCGGT 60.741 61.111 8.04 0.00 40.96 4.69
2352 2623 3.496131 CCGCCACGTTGGATTCGG 61.496 66.667 8.04 7.45 40.96 4.30
2353 2624 1.813753 ATCCGCCACGTTGGATTCG 60.814 57.895 7.71 2.85 42.31 3.34
2354 2625 1.721487 CATCCGCCACGTTGGATTC 59.279 57.895 10.28 0.00 42.31 2.52
2355 2626 2.406616 GCATCCGCCACGTTGGATT 61.407 57.895 10.28 0.00 42.31 3.01
2356 2627 2.824041 GCATCCGCCACGTTGGAT 60.824 61.111 7.71 7.71 45.84 3.41
2357 2628 4.321966 TGCATCCGCCACGTTGGA 62.322 61.111 8.04 5.88 40.96 3.53
2358 2629 4.101790 GTGCATCCGCCACGTTGG 62.102 66.667 0.00 0.00 41.55 3.77
2359 2630 4.101790 GGTGCATCCGCCACGTTG 62.102 66.667 0.00 0.00 41.40 4.10
2360 2631 4.329545 AGGTGCATCCGCCACGTT 62.330 61.111 0.00 0.00 44.28 3.99
2367 2638 4.864334 GAGGCCCAGGTGCATCCG 62.864 72.222 0.00 0.00 41.99 4.18
2369 2640 1.635817 TAAGGAGGCCCAGGTGCATC 61.636 60.000 0.00 6.13 41.12 3.91
2370 2641 0.995675 ATAAGGAGGCCCAGGTGCAT 60.996 55.000 0.00 0.00 33.88 3.96
2371 2642 0.327095 TATAAGGAGGCCCAGGTGCA 60.327 55.000 0.00 0.00 33.88 4.57
2372 2643 1.003696 GATATAAGGAGGCCCAGGTGC 59.996 57.143 0.00 0.00 33.88 5.01
2373 2644 1.630878 GGATATAAGGAGGCCCAGGTG 59.369 57.143 0.00 0.00 33.88 4.00
2374 2645 1.831697 CGGATATAAGGAGGCCCAGGT 60.832 57.143 0.00 0.00 33.88 4.00
2375 2646 0.905357 CGGATATAAGGAGGCCCAGG 59.095 60.000 0.00 0.00 33.88 4.45
2376 2647 0.250513 GCGGATATAAGGAGGCCCAG 59.749 60.000 0.00 0.00 33.88 4.45
2377 2648 0.178903 AGCGGATATAAGGAGGCCCA 60.179 55.000 0.00 0.00 33.88 5.36
2378 2649 0.537653 GAGCGGATATAAGGAGGCCC 59.462 60.000 0.00 0.00 0.00 5.80
2379 2650 1.267121 TGAGCGGATATAAGGAGGCC 58.733 55.000 0.00 0.00 0.00 5.19
2380 2651 3.402628 TTTGAGCGGATATAAGGAGGC 57.597 47.619 0.00 0.00 0.00 4.70
2381 2652 5.182001 CCAAATTTGAGCGGATATAAGGAGG 59.818 44.000 19.86 0.00 0.00 4.30
2382 2653 5.765182 ACCAAATTTGAGCGGATATAAGGAG 59.235 40.000 19.86 0.00 0.00 3.69
2383 2654 5.690865 ACCAAATTTGAGCGGATATAAGGA 58.309 37.500 19.86 0.00 0.00 3.36
2384 2655 6.391227 AACCAAATTTGAGCGGATATAAGG 57.609 37.500 19.86 0.39 0.00 2.69
2397 2668 6.204495 CACCCTTTGTATCCAAACCAAATTTG 59.796 38.462 11.40 11.40 46.32 2.32
2398 2669 6.295249 CACCCTTTGTATCCAAACCAAATTT 58.705 36.000 0.00 0.00 35.67 1.82
2399 2670 5.744594 GCACCCTTTGTATCCAAACCAAATT 60.745 40.000 0.00 0.00 35.67 1.82
2400 2671 4.262851 GCACCCTTTGTATCCAAACCAAAT 60.263 41.667 0.00 0.00 35.67 2.32
2401 2672 3.070302 GCACCCTTTGTATCCAAACCAAA 59.930 43.478 0.00 0.00 35.67 3.28
2402 2673 2.630580 GCACCCTTTGTATCCAAACCAA 59.369 45.455 0.00 0.00 35.67 3.67
2403 2674 2.243810 GCACCCTTTGTATCCAAACCA 58.756 47.619 0.00 0.00 35.67 3.67
2404 2675 1.548719 GGCACCCTTTGTATCCAAACC 59.451 52.381 0.00 0.00 35.67 3.27
2405 2676 1.201414 CGGCACCCTTTGTATCCAAAC 59.799 52.381 0.00 0.00 35.67 2.93
2406 2677 1.540267 CGGCACCCTTTGTATCCAAA 58.460 50.000 0.00 0.00 38.22 3.28
2407 2678 0.322997 CCGGCACCCTTTGTATCCAA 60.323 55.000 0.00 0.00 0.00 3.53
2408 2679 1.301623 CCGGCACCCTTTGTATCCA 59.698 57.895 0.00 0.00 0.00 3.41
2409 2680 0.746923 GACCGGCACCCTTTGTATCC 60.747 60.000 0.00 0.00 0.00 2.59
2410 2681 0.035820 TGACCGGCACCCTTTGTATC 60.036 55.000 0.00 0.00 0.00 2.24
2411 2682 0.035439 CTGACCGGCACCCTTTGTAT 60.035 55.000 0.00 0.00 0.00 2.29
2412 2683 1.373435 CTGACCGGCACCCTTTGTA 59.627 57.895 0.00 0.00 0.00 2.41
2413 2684 2.113139 CTGACCGGCACCCTTTGT 59.887 61.111 0.00 0.00 0.00 2.83
2414 2685 3.365265 GCTGACCGGCACCCTTTG 61.365 66.667 0.00 0.00 0.00 2.77
2415 2686 4.660938 GGCTGACCGGCACCCTTT 62.661 66.667 0.00 0.00 38.25 3.11
2424 2695 3.374402 AGACGTCTGGGCTGACCG 61.374 66.667 19.30 0.00 44.64 4.79
2425 2696 2.219325 CTCAGACGTCTGGGCTGACC 62.219 65.000 37.82 0.00 43.91 4.02
2426 2697 1.214062 CTCAGACGTCTGGGCTGAC 59.786 63.158 37.82 1.05 43.91 3.51
2427 2698 1.979155 CCTCAGACGTCTGGGCTGA 60.979 63.158 37.82 21.81 43.05 4.26
2428 2699 2.575993 CCTCAGACGTCTGGGCTG 59.424 66.667 37.82 23.27 43.05 4.85
2429 2700 3.386237 GCCTCAGACGTCTGGGCT 61.386 66.667 41.06 16.91 46.97 5.19
2431 2702 2.575993 CAGCCTCAGACGTCTGGG 59.424 66.667 37.82 36.04 44.00 4.45
2432 2703 2.575993 CCAGCCTCAGACGTCTGG 59.424 66.667 37.82 28.59 43.91 3.86
2433 2704 0.034059 AAACCAGCCTCAGACGTCTG 59.966 55.000 34.76 34.76 45.08 3.51
2434 2705 0.034059 CAAACCAGCCTCAGACGTCT 59.966 55.000 13.58 13.58 0.00 4.18
2435 2706 0.033504 TCAAACCAGCCTCAGACGTC 59.966 55.000 7.70 7.70 0.00 4.34
2436 2707 0.034059 CTCAAACCAGCCTCAGACGT 59.966 55.000 0.00 0.00 0.00 4.34
2437 2708 0.671781 CCTCAAACCAGCCTCAGACG 60.672 60.000 0.00 0.00 0.00 4.18
2438 2709 0.398318 ACCTCAAACCAGCCTCAGAC 59.602 55.000 0.00 0.00 0.00 3.51
2439 2710 0.397941 CACCTCAAACCAGCCTCAGA 59.602 55.000 0.00 0.00 0.00 3.27
2440 2711 1.239968 GCACCTCAAACCAGCCTCAG 61.240 60.000 0.00 0.00 0.00 3.35
2441 2712 1.228245 GCACCTCAAACCAGCCTCA 60.228 57.895 0.00 0.00 0.00 3.86
2442 2713 1.973812 GGCACCTCAAACCAGCCTC 60.974 63.158 0.00 0.00 42.01 4.70
2443 2714 2.116125 GGCACCTCAAACCAGCCT 59.884 61.111 0.00 0.00 42.01 4.58
2456 2727 3.206150 CATACCTAACACAGATGGGCAC 58.794 50.000 0.00 0.00 0.00 5.01
2457 2728 2.843730 ACATACCTAACACAGATGGGCA 59.156 45.455 0.00 0.00 0.00 5.36
2458 2729 3.560636 ACATACCTAACACAGATGGGC 57.439 47.619 0.00 0.00 0.00 5.36
2459 2730 5.496556 TCAAACATACCTAACACAGATGGG 58.503 41.667 0.00 0.00 0.00 4.00
2460 2731 5.586243 CCTCAAACATACCTAACACAGATGG 59.414 44.000 0.00 0.00 0.00 3.51
2461 2732 6.406370 TCCTCAAACATACCTAACACAGATG 58.594 40.000 0.00 0.00 0.00 2.90
2462 2733 6.620877 TCCTCAAACATACCTAACACAGAT 57.379 37.500 0.00 0.00 0.00 2.90
2463 2734 6.620877 ATCCTCAAACATACCTAACACAGA 57.379 37.500 0.00 0.00 0.00 3.41
2464 2735 7.556844 AGTATCCTCAAACATACCTAACACAG 58.443 38.462 0.00 0.00 0.00 3.66
2465 2736 7.490657 AGTATCCTCAAACATACCTAACACA 57.509 36.000 0.00 0.00 0.00 3.72
2466 2737 7.652507 GCTAGTATCCTCAAACATACCTAACAC 59.347 40.741 0.00 0.00 0.00 3.32
2467 2738 7.343574 TGCTAGTATCCTCAAACATACCTAACA 59.656 37.037 0.00 0.00 0.00 2.41
2468 2739 7.723324 TGCTAGTATCCTCAAACATACCTAAC 58.277 38.462 0.00 0.00 0.00 2.34
2469 2740 7.907841 TGCTAGTATCCTCAAACATACCTAA 57.092 36.000 0.00 0.00 0.00 2.69
2470 2741 7.907841 TTGCTAGTATCCTCAAACATACCTA 57.092 36.000 0.00 0.00 0.00 3.08
2471 2742 6.808321 TTGCTAGTATCCTCAAACATACCT 57.192 37.500 0.00 0.00 0.00 3.08
2472 2743 7.769044 TCTTTTGCTAGTATCCTCAAACATACC 59.231 37.037 0.00 0.00 0.00 2.73
2473 2744 8.718102 TCTTTTGCTAGTATCCTCAAACATAC 57.282 34.615 0.00 0.00 0.00 2.39
2474 2745 7.987458 CCTCTTTTGCTAGTATCCTCAAACATA 59.013 37.037 0.00 0.00 0.00 2.29
2475 2746 6.825721 CCTCTTTTGCTAGTATCCTCAAACAT 59.174 38.462 0.00 0.00 0.00 2.71
2476 2747 6.173339 CCTCTTTTGCTAGTATCCTCAAACA 58.827 40.000 0.00 0.00 0.00 2.83
2477 2748 5.065346 GCCTCTTTTGCTAGTATCCTCAAAC 59.935 44.000 0.00 0.00 0.00 2.93
2478 2749 5.045578 AGCCTCTTTTGCTAGTATCCTCAAA 60.046 40.000 0.00 0.00 37.28 2.69
2479 2750 4.471386 AGCCTCTTTTGCTAGTATCCTCAA 59.529 41.667 0.00 0.00 37.28 3.02
2480 2751 4.033709 AGCCTCTTTTGCTAGTATCCTCA 58.966 43.478 0.00 0.00 37.28 3.86
2481 2752 4.100189 TCAGCCTCTTTTGCTAGTATCCTC 59.900 45.833 0.00 0.00 36.81 3.71
2482 2753 4.033709 TCAGCCTCTTTTGCTAGTATCCT 58.966 43.478 0.00 0.00 36.81 3.24
2483 2754 4.141824 ACTCAGCCTCTTTTGCTAGTATCC 60.142 45.833 0.00 0.00 36.81 2.59
2484 2755 5.017294 ACTCAGCCTCTTTTGCTAGTATC 57.983 43.478 0.00 0.00 36.81 2.24
2485 2756 5.181748 CAACTCAGCCTCTTTTGCTAGTAT 58.818 41.667 0.00 0.00 36.81 2.12
2486 2757 4.569943 CAACTCAGCCTCTTTTGCTAGTA 58.430 43.478 0.00 0.00 36.81 1.82
2487 2758 3.406764 CAACTCAGCCTCTTTTGCTAGT 58.593 45.455 0.00 0.00 36.81 2.57
2488 2759 2.161211 GCAACTCAGCCTCTTTTGCTAG 59.839 50.000 0.00 0.00 39.57 3.42
2489 2760 2.154462 GCAACTCAGCCTCTTTTGCTA 58.846 47.619 0.00 0.00 39.57 3.49
2490 2761 0.957362 GCAACTCAGCCTCTTTTGCT 59.043 50.000 0.00 0.00 39.57 3.91
2491 2762 0.670162 TGCAACTCAGCCTCTTTTGC 59.330 50.000 0.00 0.00 42.37 3.68
2492 2763 3.314553 CATTGCAACTCAGCCTCTTTTG 58.685 45.455 0.00 0.00 0.00 2.44
2493 2764 2.298163 CCATTGCAACTCAGCCTCTTTT 59.702 45.455 0.00 0.00 0.00 2.27
2494 2765 1.891150 CCATTGCAACTCAGCCTCTTT 59.109 47.619 0.00 0.00 0.00 2.52
2495 2766 1.542492 CCATTGCAACTCAGCCTCTT 58.458 50.000 0.00 0.00 0.00 2.85
2496 2767 0.323178 CCCATTGCAACTCAGCCTCT 60.323 55.000 0.00 0.00 0.00 3.69
2497 2768 0.322816 TCCCATTGCAACTCAGCCTC 60.323 55.000 0.00 0.00 0.00 4.70
2498 2769 0.323178 CTCCCATTGCAACTCAGCCT 60.323 55.000 0.00 0.00 0.00 4.58
2499 2770 0.322816 TCTCCCATTGCAACTCAGCC 60.323 55.000 0.00 0.00 0.00 4.85
2500 2771 1.538047 TTCTCCCATTGCAACTCAGC 58.462 50.000 0.00 0.00 0.00 4.26
2501 2772 3.057033 CCTTTTCTCCCATTGCAACTCAG 60.057 47.826 0.00 0.00 0.00 3.35
2502 2773 2.892852 CCTTTTCTCCCATTGCAACTCA 59.107 45.455 0.00 0.00 0.00 3.41
2503 2774 3.157087 TCCTTTTCTCCCATTGCAACTC 58.843 45.455 0.00 0.00 0.00 3.01
2504 2775 3.243359 TCCTTTTCTCCCATTGCAACT 57.757 42.857 0.00 0.00 0.00 3.16
2505 2776 4.440663 GCTATCCTTTTCTCCCATTGCAAC 60.441 45.833 0.00 0.00 0.00 4.17
2506 2777 3.701040 GCTATCCTTTTCTCCCATTGCAA 59.299 43.478 0.00 0.00 0.00 4.08
2507 2778 3.053395 AGCTATCCTTTTCTCCCATTGCA 60.053 43.478 0.00 0.00 0.00 4.08
2508 2779 3.560105 AGCTATCCTTTTCTCCCATTGC 58.440 45.455 0.00 0.00 0.00 3.56
2509 2780 4.785301 TGAGCTATCCTTTTCTCCCATTG 58.215 43.478 0.00 0.00 0.00 2.82
2510 2781 5.383476 CATGAGCTATCCTTTTCTCCCATT 58.617 41.667 0.00 0.00 0.00 3.16
2511 2782 4.749166 GCATGAGCTATCCTTTTCTCCCAT 60.749 45.833 0.00 0.00 37.91 4.00
2512 2783 3.434167 GCATGAGCTATCCTTTTCTCCCA 60.434 47.826 0.00 0.00 37.91 4.37
2513 2784 3.145286 GCATGAGCTATCCTTTTCTCCC 58.855 50.000 0.00 0.00 37.91 4.30
2514 2785 3.145286 GGCATGAGCTATCCTTTTCTCC 58.855 50.000 0.00 0.00 41.70 3.71
2515 2786 3.145286 GGGCATGAGCTATCCTTTTCTC 58.855 50.000 0.00 0.00 41.70 2.87
2516 2787 2.511218 TGGGCATGAGCTATCCTTTTCT 59.489 45.455 0.00 0.00 41.70 2.52
2517 2788 2.936202 TGGGCATGAGCTATCCTTTTC 58.064 47.619 0.00 0.00 41.70 2.29
2518 2789 3.386932 TTGGGCATGAGCTATCCTTTT 57.613 42.857 0.00 0.00 41.70 2.27
2519 2790 3.117398 TGATTGGGCATGAGCTATCCTTT 60.117 43.478 0.00 0.00 41.70 3.11
2520 2791 2.444388 TGATTGGGCATGAGCTATCCTT 59.556 45.455 0.00 0.00 41.70 3.36
2521 2792 2.060275 TGATTGGGCATGAGCTATCCT 58.940 47.619 0.00 0.00 41.70 3.24
2522 2793 2.574006 TGATTGGGCATGAGCTATCC 57.426 50.000 0.00 0.00 41.70 2.59
2530 2801 4.500887 GGTCTTGATTCATGATTGGGCATG 60.501 45.833 0.00 0.00 45.41 4.06
2531 2802 3.640029 GGTCTTGATTCATGATTGGGCAT 59.360 43.478 0.00 0.00 0.00 4.40
2532 2803 3.025978 GGTCTTGATTCATGATTGGGCA 58.974 45.455 0.00 0.00 0.00 5.36
2533 2804 2.363359 GGGTCTTGATTCATGATTGGGC 59.637 50.000 0.00 0.00 0.00 5.36
2534 2805 2.961062 GGGGTCTTGATTCATGATTGGG 59.039 50.000 0.00 0.00 0.00 4.12
2535 2806 3.634504 TGGGGTCTTGATTCATGATTGG 58.365 45.455 0.00 0.00 0.00 3.16
2536 2807 5.864418 ATTGGGGTCTTGATTCATGATTG 57.136 39.130 0.00 0.00 0.00 2.67
2537 2808 6.914665 TCTATTGGGGTCTTGATTCATGATT 58.085 36.000 0.00 0.00 0.00 2.57
2538 2809 6.520021 TCTATTGGGGTCTTGATTCATGAT 57.480 37.500 0.00 0.00 0.00 2.45
2539 2810 5.974156 TCTATTGGGGTCTTGATTCATGA 57.026 39.130 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.