Multiple sequence alignment - TraesCS1D01G345300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G345300 chr1D 100.000 7009 0 0 1 7009 433370313 433377321 0.000000e+00 12944.0
1 TraesCS1D01G345300 chr1B 91.270 4158 188 80 310 4393 585333492 585337548 0.000000e+00 5505.0
2 TraesCS1D01G345300 chr1B 89.254 1368 97 18 5386 6744 585338570 585339896 0.000000e+00 1666.0
3 TraesCS1D01G345300 chr1B 95.248 484 19 3 4826 5305 585338086 585338569 0.000000e+00 763.0
4 TraesCS1D01G345300 chr1B 93.303 433 29 0 4392 4824 585337580 585338012 2.130000e-179 640.0
5 TraesCS1D01G345300 chr1B 85.294 238 23 7 6783 7009 585358615 585358851 1.180000e-57 235.0
6 TraesCS1D01G345300 chr1B 89.524 105 6 3 1 101 585332925 585333028 2.050000e-25 128.0
7 TraesCS1D01G345300 chr1A 95.329 2419 96 10 2878 5281 531867098 531869514 0.000000e+00 3825.0
8 TraesCS1D01G345300 chr1A 88.207 1645 140 27 5387 7009 531869541 531871153 0.000000e+00 1914.0
9 TraesCS1D01G345300 chr1A 86.946 1716 100 75 658 2304 531864662 531866322 0.000000e+00 1814.0
10 TraesCS1D01G345300 chr1A 93.359 527 22 3 2315 2829 531866407 531866932 0.000000e+00 767.0
11 TraesCS1D01G345300 chr1A 91.613 155 9 1 241 391 531863916 531864070 1.980000e-50 211.0
12 TraesCS1D01G345300 chr1A 93.846 65 4 0 37 101 531863456 531863520 1.610000e-16 99.0
13 TraesCS1D01G345300 chr1A 90.625 64 5 1 2816 2879 531866932 531866994 4.510000e-12 84.2
14 TraesCS1D01G345300 chr1A 92.453 53 2 2 105 157 531863699 531863749 2.710000e-09 75.0
15 TraesCS1D01G345300 chr7B 91.304 92 6 2 5301 5390 289427201 289427292 2.650000e-24 124.0
16 TraesCS1D01G345300 chr7D 91.209 91 4 3 5304 5392 148114555 148114467 3.430000e-23 121.0
17 TraesCS1D01G345300 chr7D 90.909 88 7 1 5301 5387 124512857 124512770 4.440000e-22 117.0
18 TraesCS1D01G345300 chr6A 91.011 89 8 0 5303 5391 338118930 338119018 3.430000e-23 121.0
19 TraesCS1D01G345300 chr5B 90.909 88 8 0 5304 5391 469850297 469850210 1.240000e-22 119.0
20 TraesCS1D01G345300 chr2D 91.667 84 7 0 5304 5387 192300984 192301067 4.440000e-22 117.0
21 TraesCS1D01G345300 chr7A 90.805 87 7 1 5304 5389 330076895 330076809 1.600000e-21 115.0
22 TraesCS1D01G345300 chr4B 90.805 87 7 1 5304 5389 552777639 552777553 1.600000e-21 115.0
23 TraesCS1D01G345300 chr6B 89.773 88 9 0 5304 5391 321997689 321997776 5.750000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G345300 chr1D 433370313 433377321 7008 False 12944.00 12944 100.00000 1 7009 1 chr1D.!!$F1 7008
1 TraesCS1D01G345300 chr1B 585332925 585339896 6971 False 1740.40 5505 91.71980 1 6744 5 chr1B.!!$F2 6743
2 TraesCS1D01G345300 chr1A 531863456 531871153 7697 False 1098.65 3825 91.54725 37 7009 8 chr1A.!!$F1 6972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 1128 1.003580 TCACCTCCTCCTTACGTACGT 59.996 52.381 25.98 25.98 0.00 3.57 F
1175 1891 0.385473 CGATCAAACACAACACGCCC 60.385 55.000 0.00 0.00 0.00 6.13 F
2440 3249 0.322816 GCTTCAGCAGGGACAATGGA 60.323 55.000 0.00 0.00 41.59 3.41 F
3391 4340 0.038744 CTCAAACATGTGGCCTCCCT 59.961 55.000 3.32 0.00 0.00 4.20 F
4140 5094 2.290705 CCGTGGAAATAACAGGAACCCT 60.291 50.000 0.00 0.00 0.00 4.34 F
5281 6348 0.622665 CAACAAGATGCTCCCCTCCT 59.377 55.000 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 2332 0.322008 CCTTCCAAGGCCTGTCAGTC 60.322 60.0 5.69 0.0 39.76 3.51 R
2746 3566 0.036858 GGAGAGTTGTGAGGTCCAGC 60.037 60.0 0.00 0.0 0.00 4.85 R
4140 5094 0.318699 CTCTCACCGCGAGTTTGTCA 60.319 55.0 8.23 0.0 42.88 3.58 R
4725 5716 0.746063 CTAGAGCAGCACCTGAGAGG 59.254 60.0 0.00 0.0 42.49 3.69 R
5371 6440 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.0 0.00 0.0 0.00 4.37 R
6906 7987 0.098200 GGAATGACTTAAACGGGCGC 59.902 55.0 0.00 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 7.515586 AGCTTTAGTACAACTTAAAGGGAGTT 58.484 34.615 11.96 0.00 37.82 3.01
26 28 7.660617 AGCTTTAGTACAACTTAAAGGGAGTTC 59.339 37.037 11.96 0.00 35.26 3.01
27 29 7.443272 GCTTTAGTACAACTTAAAGGGAGTTCA 59.557 37.037 11.96 0.00 35.26 3.18
29 31 8.842358 TTAGTACAACTTAAAGGGAGTTCATG 57.158 34.615 0.00 0.00 35.26 3.07
45 49 4.218417 AGTTCATGGGGATCGAAAAACAAG 59.782 41.667 0.00 0.00 0.00 3.16
122 317 3.303395 GCGGAAATGTTGATCGATCCTTC 60.303 47.826 22.31 15.11 0.00 3.46
168 422 1.268948 GGAGGACGCGGAACTGTATAC 60.269 57.143 12.47 0.00 0.00 1.47
292 592 1.444895 GCACAAAATCAGCAGCCCG 60.445 57.895 0.00 0.00 0.00 6.13
341 657 1.094785 GTACGTACGCCTCCCTACAA 58.905 55.000 16.72 0.00 0.00 2.41
391 707 3.499537 GGTGAAAGCGATGATGCATCATA 59.500 43.478 35.96 19.63 46.84 2.15
409 725 6.705782 CATCATACTATGTTTCCGTGTTGAC 58.294 40.000 0.00 0.00 0.00 3.18
434 934 6.187727 TGGGTTGATCTTAACTGTCTTCTT 57.812 37.500 0.00 0.00 0.00 2.52
435 935 6.231211 TGGGTTGATCTTAACTGTCTTCTTC 58.769 40.000 0.00 0.00 0.00 2.87
436 936 6.043243 TGGGTTGATCTTAACTGTCTTCTTCT 59.957 38.462 0.00 0.00 0.00 2.85
477 977 8.152023 AGTTGAGATAACTCCCAAACTAATCT 57.848 34.615 3.33 0.00 41.99 2.40
478 978 8.261522 AGTTGAGATAACTCCCAAACTAATCTC 58.738 37.037 3.33 0.00 41.99 2.75
479 979 7.979786 TGAGATAACTCCCAAACTAATCTCT 57.020 36.000 9.94 0.00 41.99 3.10
480 980 8.380742 TGAGATAACTCCCAAACTAATCTCTT 57.619 34.615 9.94 0.00 41.99 2.85
481 981 8.478877 TGAGATAACTCCCAAACTAATCTCTTC 58.521 37.037 9.94 0.00 41.99 2.87
482 982 7.493367 AGATAACTCCCAAACTAATCTCTTCG 58.507 38.462 0.00 0.00 0.00 3.79
483 983 3.863041 ACTCCCAAACTAATCTCTTCGC 58.137 45.455 0.00 0.00 0.00 4.70
484 984 3.260884 ACTCCCAAACTAATCTCTTCGCA 59.739 43.478 0.00 0.00 0.00 5.10
485 985 4.253685 CTCCCAAACTAATCTCTTCGCAA 58.746 43.478 0.00 0.00 0.00 4.85
486 986 4.647611 TCCCAAACTAATCTCTTCGCAAA 58.352 39.130 0.00 0.00 0.00 3.68
487 987 5.067273 TCCCAAACTAATCTCTTCGCAAAA 58.933 37.500 0.00 0.00 0.00 2.44
488 988 5.533154 TCCCAAACTAATCTCTTCGCAAAAA 59.467 36.000 0.00 0.00 0.00 1.94
531 1041 8.314021 CAAATATATATGTGAGCTAGTGTCCCA 58.686 37.037 7.05 0.00 0.00 4.37
582 1097 4.143333 CATGCAGCAAGCCAGGCC 62.143 66.667 8.22 0.00 44.83 5.19
611 1126 1.747924 GGTCACCTCCTCCTTACGTAC 59.252 57.143 0.00 0.00 0.00 3.67
612 1127 1.399791 GTCACCTCCTCCTTACGTACG 59.600 57.143 15.01 15.01 0.00 3.67
613 1128 1.003580 TCACCTCCTCCTTACGTACGT 59.996 52.381 25.98 25.98 0.00 3.57
614 1129 2.236146 TCACCTCCTCCTTACGTACGTA 59.764 50.000 23.60 23.60 0.00 3.57
615 1130 3.009723 CACCTCCTCCTTACGTACGTAA 58.990 50.000 32.25 32.25 38.14 3.18
625 1140 2.946086 GTACGTAACGGCCGAGCG 60.946 66.667 35.90 30.87 0.00 5.03
626 1141 4.834892 TACGTAACGGCCGAGCGC 62.835 66.667 35.90 17.21 0.00 5.92
875 1551 2.434359 GGTGCCACGCTGACCTAC 60.434 66.667 0.00 0.00 0.00 3.18
890 1573 1.143277 ACCTACGTCCTCCATCGATCT 59.857 52.381 0.00 0.00 0.00 2.75
897 1580 1.685517 TCCTCCATCGATCTGCTTCAG 59.314 52.381 0.00 0.00 0.00 3.02
945 1645 4.052518 ACACTCCCCATGCCCTGC 62.053 66.667 0.00 0.00 0.00 4.85
960 1660 1.375098 CCTGCTAGCTTGCCTTGCTC 61.375 60.000 17.57 0.00 41.91 4.26
1129 1845 3.965888 GCCTTCCAGGTGACTCATT 57.034 52.632 0.00 0.00 40.21 2.57
1134 1850 4.401925 CCTTCCAGGTGACTCATTTTCTT 58.598 43.478 0.00 0.00 40.21 2.52
1137 1853 3.084786 CCAGGTGACTCATTTTCTTCCC 58.915 50.000 0.00 0.00 40.21 3.97
1145 1861 7.039011 GGTGACTCATTTTCTTCCCCTTAATTT 60.039 37.037 0.00 0.00 0.00 1.82
1146 1862 8.029522 GTGACTCATTTTCTTCCCCTTAATTTC 58.970 37.037 0.00 0.00 0.00 2.17
1148 1864 8.354711 ACTCATTTTCTTCCCCTTAATTTCTC 57.645 34.615 0.00 0.00 0.00 2.87
1149 1865 8.173412 ACTCATTTTCTTCCCCTTAATTTCTCT 58.827 33.333 0.00 0.00 0.00 3.10
1150 1866 8.581253 TCATTTTCTTCCCCTTAATTTCTCTC 57.419 34.615 0.00 0.00 0.00 3.20
1154 1870 5.501156 TCTTCCCCTTAATTTCTCTCTTGC 58.499 41.667 0.00 0.00 0.00 4.01
1157 1873 3.873952 CCCCTTAATTTCTCTCTTGCTCG 59.126 47.826 0.00 0.00 0.00 5.03
1158 1874 4.383118 CCCCTTAATTTCTCTCTTGCTCGA 60.383 45.833 0.00 0.00 0.00 4.04
1159 1875 5.363939 CCCTTAATTTCTCTCTTGCTCGAT 58.636 41.667 0.00 0.00 0.00 3.59
1162 1878 6.536582 CCTTAATTTCTCTCTTGCTCGATCAA 59.463 38.462 1.22 1.22 0.00 2.57
1163 1879 7.065085 CCTTAATTTCTCTCTTGCTCGATCAAA 59.935 37.037 2.98 0.00 0.00 2.69
1165 1881 3.942130 TCTCTCTTGCTCGATCAAACA 57.058 42.857 2.98 0.00 0.00 2.83
1167 1883 3.005791 TCTCTCTTGCTCGATCAAACACA 59.994 43.478 2.98 0.00 0.00 3.72
1168 1884 3.727726 TCTCTTGCTCGATCAAACACAA 58.272 40.909 2.98 0.00 0.00 3.33
1170 1886 3.202097 TCTTGCTCGATCAAACACAACA 58.798 40.909 2.98 0.00 0.00 3.33
1171 1887 3.002246 TCTTGCTCGATCAAACACAACAC 59.998 43.478 2.98 0.00 0.00 3.32
1172 1888 1.260297 TGCTCGATCAAACACAACACG 59.740 47.619 0.00 0.00 0.00 4.49
1174 1890 0.584396 TCGATCAAACACAACACGCC 59.416 50.000 0.00 0.00 0.00 5.68
1175 1891 0.385473 CGATCAAACACAACACGCCC 60.385 55.000 0.00 0.00 0.00 6.13
1176 1892 0.951558 GATCAAACACAACACGCCCT 59.048 50.000 0.00 0.00 0.00 5.19
1177 1893 1.336755 GATCAAACACAACACGCCCTT 59.663 47.619 0.00 0.00 0.00 3.95
1178 1894 0.453793 TCAAACACAACACGCCCTTG 59.546 50.000 0.00 0.00 0.00 3.61
1179 1895 0.453793 CAAACACAACACGCCCTTGA 59.546 50.000 0.00 0.00 0.00 3.02
1180 1896 1.066908 CAAACACAACACGCCCTTGAT 59.933 47.619 0.00 0.00 0.00 2.57
1181 1897 1.398692 AACACAACACGCCCTTGATT 58.601 45.000 0.00 0.00 0.00 2.57
1184 1900 1.541147 CACAACACGCCCTTGATTGAT 59.459 47.619 0.00 0.00 0.00 2.57
1185 1901 2.030007 CACAACACGCCCTTGATTGATT 60.030 45.455 0.00 0.00 0.00 2.57
1187 1903 3.244976 CAACACGCCCTTGATTGATTTC 58.755 45.455 0.00 0.00 0.00 2.17
1189 1905 2.749621 ACACGCCCTTGATTGATTTCTC 59.250 45.455 0.00 0.00 0.00 2.87
1190 1906 2.009774 ACGCCCTTGATTGATTTCTCG 58.990 47.619 0.00 0.00 0.00 4.04
1192 1908 2.223112 CGCCCTTGATTGATTTCTCGTG 60.223 50.000 0.00 0.00 0.00 4.35
1193 1909 2.478539 GCCCTTGATTGATTTCTCGTGC 60.479 50.000 0.00 0.00 0.00 5.34
1197 1913 5.123820 CCCTTGATTGATTTCTCGTGCTTTA 59.876 40.000 0.00 0.00 0.00 1.85
1198 1914 6.349280 CCCTTGATTGATTTCTCGTGCTTTAA 60.349 38.462 0.00 0.00 0.00 1.52
1200 1916 7.219535 CCTTGATTGATTTCTCGTGCTTTAATG 59.780 37.037 0.00 0.00 0.00 1.90
1222 1941 1.203523 CAGAGGAGGAACTGGAAGACG 59.796 57.143 0.00 0.00 41.55 4.18
1365 2084 4.415150 CCAGCACTCCACGCCCAT 62.415 66.667 0.00 0.00 0.00 4.00
1366 2085 2.584064 CAGCACTCCACGCCCATA 59.416 61.111 0.00 0.00 0.00 2.74
1388 2107 3.200593 CCATGAGCTGCGAGGTGC 61.201 66.667 0.00 0.00 46.70 5.01
1602 2322 4.031314 GCGGTTTGTTTTGAGTTTTGACTC 59.969 41.667 0.00 0.00 37.27 3.36
1612 2332 5.718649 TGAGTTTTGACTCAACTTTCTCG 57.281 39.130 6.78 0.00 43.03 4.04
1614 2334 5.291128 TGAGTTTTGACTCAACTTTCTCGAC 59.709 40.000 6.78 0.00 43.03 4.20
1615 2335 5.420409 AGTTTTGACTCAACTTTCTCGACT 58.580 37.500 0.00 0.00 29.75 4.18
1691 2414 4.922206 TCATGCCTAAAACCATGAACTCT 58.078 39.130 0.00 0.00 43.34 3.24
1717 2440 1.824230 CTCTCTTGACCACCTCTCCAG 59.176 57.143 0.00 0.00 0.00 3.86
1781 2505 9.653287 TTGGTATATATTCTTCTATGCGAAAGG 57.347 33.333 0.00 0.00 0.00 3.11
1910 2634 3.502211 ACGTGATCCAATCAAAGTGTTCC 59.498 43.478 0.00 0.00 41.69 3.62
1980 2704 6.620949 GCTCCAACTCGGTAAAAGATTTCTTC 60.621 42.308 0.00 0.00 33.39 2.87
1999 2723 9.712305 ATTTCTTCTCCCTGTATAATTGATACG 57.288 33.333 0.00 0.00 43.09 3.06
2000 2724 7.834881 TCTTCTCCCTGTATAATTGATACGT 57.165 36.000 0.00 0.00 43.09 3.57
2001 2725 8.929260 TCTTCTCCCTGTATAATTGATACGTA 57.071 34.615 0.00 0.00 43.09 3.57
2002 2726 9.529823 TCTTCTCCCTGTATAATTGATACGTAT 57.470 33.333 8.05 8.05 43.09 3.06
2029 2753 6.668541 ACTGTATCATGCAGTGTTTACATC 57.331 37.500 7.71 0.00 44.52 3.06
2034 2758 4.587891 TCATGCAGTGTTTACATCCATGA 58.412 39.130 13.87 13.87 0.00 3.07
2035 2759 5.195185 TCATGCAGTGTTTACATCCATGAT 58.805 37.500 13.87 0.00 0.00 2.45
2082 2806 7.816031 CCTTTGATGAATATTCTTTGCACAGTT 59.184 33.333 16.24 0.00 0.00 3.16
2084 2808 6.855836 TGATGAATATTCTTTGCACAGTTCC 58.144 36.000 16.24 0.00 0.00 3.62
2099 2823 5.674820 GCACAGTTCCTAGCAGCTTTTAATC 60.675 44.000 0.00 0.00 0.00 1.75
2257 2984 2.125106 CCTTGCCGGTAGCCTGAC 60.125 66.667 1.90 0.00 42.71 3.51
2307 3116 8.865420 TTAGTTCAGAGTTCAGATGTACTAGT 57.135 34.615 0.00 0.00 31.34 2.57
2308 3117 7.768807 AGTTCAGAGTTCAGATGTACTAGTT 57.231 36.000 0.00 0.00 0.00 2.24
2309 3118 7.822658 AGTTCAGAGTTCAGATGTACTAGTTC 58.177 38.462 0.00 0.00 0.00 3.01
2310 3119 7.668052 AGTTCAGAGTTCAGATGTACTAGTTCT 59.332 37.037 0.00 0.00 0.00 3.01
2311 3120 8.301002 GTTCAGAGTTCAGATGTACTAGTTCTT 58.699 37.037 0.00 0.00 0.00 2.52
2312 3121 8.410673 TCAGAGTTCAGATGTACTAGTTCTTT 57.589 34.615 0.00 0.00 0.00 2.52
2313 3122 8.516234 TCAGAGTTCAGATGTACTAGTTCTTTC 58.484 37.037 0.00 0.00 0.00 2.62
2389 3198 4.985538 ACTTTCTTGATACAAGCAAGGGA 58.014 39.130 20.70 0.00 42.24 4.20
2405 3214 4.625324 GCAAGGGACTGTTCCATGTATACA 60.625 45.833 11.70 8.27 44.98 2.29
2409 3218 6.731467 AGGGACTGTTCCATGTATACATTTT 58.269 36.000 15.85 0.00 44.98 1.82
2440 3249 0.322816 GCTTCAGCAGGGACAATGGA 60.323 55.000 0.00 0.00 41.59 3.41
2492 3301 5.234972 GCACGGTTGGTTAATATGGTACTAC 59.765 44.000 0.00 0.00 0.00 2.73
2503 3312 9.813446 GTTAATATGGTACTACACTTACAAGCT 57.187 33.333 0.00 0.00 0.00 3.74
2559 3368 4.748277 ATAAGCCGCCTTCTTTACTACA 57.252 40.909 0.00 0.00 32.47 2.74
2563 3372 3.939592 AGCCGCCTTCTTTACTACATTTC 59.060 43.478 0.00 0.00 0.00 2.17
2564 3373 3.939592 GCCGCCTTCTTTACTACATTTCT 59.060 43.478 0.00 0.00 0.00 2.52
2565 3374 5.105064 AGCCGCCTTCTTTACTACATTTCTA 60.105 40.000 0.00 0.00 0.00 2.10
2640 3460 7.864379 GCTTAGTGCTGATTATTATGCATTTGT 59.136 33.333 3.54 0.00 37.76 2.83
2677 3497 3.801698 TGCATATCTCAAGCAGGTTCTC 58.198 45.455 0.00 0.00 33.75 2.87
2746 3566 4.153475 CCCAAAGCTGCAATCAAAATGAAG 59.847 41.667 1.02 0.00 0.00 3.02
2773 3593 1.797933 CACAACTCTCCTCGACGCG 60.798 63.158 3.53 3.53 0.00 6.01
2856 3689 7.222999 GTCTTCTACAATCATTTACTCCTTCCG 59.777 40.741 0.00 0.00 0.00 4.30
2963 3903 4.645535 TGTTTATGAGAAGCAGCAGAACT 58.354 39.130 0.00 0.00 0.00 3.01
3146 4086 8.391106 GTTTCAGTTATGGTCTATGTGTCAATC 58.609 37.037 0.00 0.00 0.00 2.67
3297 4246 5.275067 TCAACCTGCAAATTGTTTTAGCT 57.725 34.783 8.92 0.00 0.00 3.32
3378 4327 5.926542 GGCCTTCTGTTTAATTTCCTCAAAC 59.073 40.000 0.00 0.00 33.70 2.93
3391 4340 0.038744 CTCAAACATGTGGCCTCCCT 59.961 55.000 3.32 0.00 0.00 4.20
3408 4357 6.445462 GGCCTCCCTCTTTTATATCCTAATCT 59.555 42.308 0.00 0.00 0.00 2.40
4110 5064 8.929260 ATATGATCATCTGCCACAATCTAAAA 57.071 30.769 12.53 0.00 0.00 1.52
4140 5094 2.290705 CCGTGGAAATAACAGGAACCCT 60.291 50.000 0.00 0.00 0.00 4.34
4591 5582 4.588951 AGTAAGATCACAAGTGACCAGTCA 59.411 41.667 4.84 0.00 43.11 3.41
4599 5590 3.254166 ACAAGTGACCAGTCATGCATTTC 59.746 43.478 3.41 0.00 42.18 2.17
4683 5674 2.810852 CAGTTTGCTTTGGGAGACTCTC 59.189 50.000 1.74 0.00 0.00 3.20
4725 5716 6.899114 ACAGTTTTATGGTCGAATGAAGAAC 58.101 36.000 0.00 0.00 0.00 3.01
4876 5941 6.252599 TCATGTCTATTAATCCAGGCAGTT 57.747 37.500 0.00 0.00 28.25 3.16
4924 5989 3.118454 CACTGCGGTTTCGGCGAT 61.118 61.111 11.76 0.00 36.79 4.58
5042 6108 2.659521 TCATTCCCTTCCCCCAATCTTT 59.340 45.455 0.00 0.00 0.00 2.52
5053 6119 4.521256 TCCCCCAATCTTTAAAACAGTTCG 59.479 41.667 0.00 0.00 0.00 3.95
5128 6195 1.003839 GAGCACCGGATTGGACACA 60.004 57.895 9.46 0.00 42.00 3.72
5222 6289 3.282885 GAGTGCCCCTCCTATTTTTCAG 58.717 50.000 0.00 0.00 33.79 3.02
5281 6348 0.622665 CAACAAGATGCTCCCCTCCT 59.377 55.000 0.00 0.00 0.00 3.69
5310 6379 2.841442 GCGGATGCTAAATACTCCCT 57.159 50.000 0.00 0.00 38.39 4.20
5311 6380 2.689646 GCGGATGCTAAATACTCCCTC 58.310 52.381 0.00 0.00 38.39 4.30
5312 6381 2.613223 GCGGATGCTAAATACTCCCTCC 60.613 54.545 0.00 0.00 38.39 4.30
5313 6382 2.352814 CGGATGCTAAATACTCCCTCCG 60.353 54.545 0.00 0.00 38.51 4.63
5314 6383 2.633481 GGATGCTAAATACTCCCTCCGT 59.367 50.000 0.00 0.00 0.00 4.69
5315 6384 3.306156 GGATGCTAAATACTCCCTCCGTC 60.306 52.174 0.00 0.00 0.00 4.79
5316 6385 2.037144 TGCTAAATACTCCCTCCGTCC 58.963 52.381 0.00 0.00 0.00 4.79
5317 6386 1.343789 GCTAAATACTCCCTCCGTCCC 59.656 57.143 0.00 0.00 0.00 4.46
5318 6387 2.674420 CTAAATACTCCCTCCGTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
5319 6388 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
5320 6389 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
5321 6390 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5322 6391 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5323 6392 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5324 6393 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5325 6394 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
5326 6395 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
5327 6396 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
5328 6397 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
5329 6398 4.911522 TCCCTCCGTCCCAAAATATAAGAT 59.088 41.667 0.00 0.00 0.00 2.40
5330 6399 5.003804 CCCTCCGTCCCAAAATATAAGATG 58.996 45.833 0.00 0.00 0.00 2.90
5331 6400 5.456186 CCCTCCGTCCCAAAATATAAGATGT 60.456 44.000 0.00 0.00 0.00 3.06
5332 6401 6.062095 CCTCCGTCCCAAAATATAAGATGTT 58.938 40.000 0.00 0.00 0.00 2.71
5333 6402 6.546034 CCTCCGTCCCAAAATATAAGATGTTT 59.454 38.462 0.00 0.00 0.00 2.83
5334 6403 7.068226 CCTCCGTCCCAAAATATAAGATGTTTT 59.932 37.037 0.00 0.00 34.50 2.43
5335 6404 8.356000 TCCGTCCCAAAATATAAGATGTTTTT 57.644 30.769 0.00 0.00 32.31 1.94
5381 6450 8.863872 AAATATCTTAAATTATGGGACGGAGG 57.136 34.615 0.00 0.00 0.00 4.30
5382 6451 4.699925 TCTTAAATTATGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
5383 6452 4.300345 TCTTAAATTATGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
5384 6453 4.347000 TCTTAAATTATGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
5417 6486 7.824289 TCTGCATTTAAACTCACTTGCTATACT 59.176 33.333 9.82 0.00 0.00 2.12
5418 6487 9.098355 CTGCATTTAAACTCACTTGCTATACTA 57.902 33.333 9.82 0.00 0.00 1.82
5426 6495 8.879342 AACTCACTTGCTATACTATGACATTC 57.121 34.615 0.00 0.00 0.00 2.67
5452 6521 2.368439 CATTCAATGGAAGAGGCCGAA 58.632 47.619 0.00 0.00 36.25 4.30
5458 6527 0.324368 TGGAAGAGGCCGAAGAGCTA 60.324 55.000 0.00 0.00 0.00 3.32
5548 6617 2.105134 ACCAGAATTACACAACGGTCCA 59.895 45.455 0.00 0.00 0.00 4.02
5588 6657 7.336931 AGCTGATCAATAAAGTCGTTTTGGTAT 59.663 33.333 0.00 0.00 0.00 2.73
5589 6658 7.968405 GCTGATCAATAAAGTCGTTTTGGTATT 59.032 33.333 0.00 0.00 0.00 1.89
5831 6904 2.159099 GGTGAAGATCTACGGCATGTCA 60.159 50.000 0.00 0.00 0.00 3.58
5878 6951 2.997897 GGAGGTGAGGCTGGACGT 60.998 66.667 0.00 0.00 0.00 4.34
6077 7153 7.889469 AGATCTGAAATGTGTACAAATTTGCT 58.111 30.769 25.39 12.79 0.00 3.91
6100 7176 7.067615 TGCTATTTTAGGGCGATTTGTTGATTA 59.932 33.333 0.00 0.00 0.00 1.75
6178 7254 2.220824 TGCGACAGTCAAAGTTTCATCG 59.779 45.455 0.41 0.00 0.00 3.84
6192 7268 4.091509 AGTTTCATCGACGTTCTAATGCAC 59.908 41.667 0.00 0.00 0.00 4.57
6199 7275 3.670203 GACGTTCTAATGCACGAAATGG 58.330 45.455 0.00 0.00 39.76 3.16
6229 7305 6.475727 TGTCACGGAAGATTCGAAATTATCTC 59.524 38.462 0.00 0.00 30.95 2.75
6246 7322 7.849804 ATTATCTCACATCACACACCTAAAC 57.150 36.000 0.00 0.00 0.00 2.01
6251 7327 6.601613 TCTCACATCACACACCTAAACTTTTT 59.398 34.615 0.00 0.00 0.00 1.94
6252 7328 6.559810 TCACATCACACACCTAAACTTTTTG 58.440 36.000 0.00 0.00 0.00 2.44
6301 7379 4.157120 CTGAAGTACCCGGGCCCG 62.157 72.222 37.99 37.99 39.44 6.13
6339 7417 1.134521 TGTCGTGGATCTGGCCAATAC 60.135 52.381 7.01 4.99 40.20 1.89
6342 7420 1.742411 CGTGGATCTGGCCAATACGTT 60.742 52.381 7.01 0.00 40.20 3.99
6369 7447 2.676121 TCTGGGTTGCGGCATTGG 60.676 61.111 2.28 0.00 0.00 3.16
6370 7448 2.990967 CTGGGTTGCGGCATTGGT 60.991 61.111 2.28 0.00 0.00 3.67
6379 7457 2.358619 GGCATTGGTGGGCCTACA 59.641 61.111 21.99 6.01 46.74 2.74
6391 7470 2.180276 GGGCCTACAGTCTCTGAAAGA 58.820 52.381 0.84 0.00 43.69 2.52
6414 7493 0.105964 TTGACCTTATGATCCGGCGG 59.894 55.000 22.51 22.51 0.00 6.13
6457 7538 0.036952 CAATCAGTCGGCAGTGGAGT 60.037 55.000 0.00 0.00 0.00 3.85
6494 7575 2.437180 CTCTTGCAGCGCCATGGA 60.437 61.111 18.40 0.00 0.00 3.41
6526 7607 5.295292 GCATCAGACTGTTAGTGTATGCATT 59.705 40.000 3.54 0.00 38.61 3.56
6544 7625 3.499737 GCGAAGGGTGATGCACGG 61.500 66.667 0.00 0.00 34.83 4.94
6560 7641 0.460284 ACGGCATTGATCGTGTCCTC 60.460 55.000 5.01 0.00 38.25 3.71
6566 7647 0.976073 TTGATCGTGTCCTCCCCCTC 60.976 60.000 0.00 0.00 0.00 4.30
6575 7656 2.723563 TGTCCTCCCCCTCGGTATAATA 59.276 50.000 0.00 0.00 0.00 0.98
6576 7657 3.338824 TGTCCTCCCCCTCGGTATAATAT 59.661 47.826 0.00 0.00 0.00 1.28
6581 7662 5.013808 CCTCCCCCTCGGTATAATATGTTTT 59.986 44.000 0.00 0.00 0.00 2.43
6588 7669 6.990349 CCTCGGTATAATATGTTTTCACAGGT 59.010 38.462 0.00 0.00 35.94 4.00
6627 7708 2.173382 GACGCGTGGTGATGTTGC 59.827 61.111 20.70 0.00 0.00 4.17
6665 7746 4.692625 CCATTAGTTGTCACTTGTGAGGAG 59.307 45.833 3.45 0.00 34.06 3.69
6666 7747 5.300752 CATTAGTTGTCACTTGTGAGGAGT 58.699 41.667 3.45 2.10 34.06 3.85
6667 7748 3.185246 AGTTGTCACTTGTGAGGAGTG 57.815 47.619 3.45 0.00 44.54 3.51
6671 7752 2.381752 TCACTTGTGAGGAGTGAGGA 57.618 50.000 3.03 0.00 46.21 3.71
6678 7759 2.203640 AGGAGTGAGGACGGTGCA 60.204 61.111 1.61 0.00 0.00 4.57
6732 7813 3.649277 CTGTCGTGCCCTTCCTCCG 62.649 68.421 0.00 0.00 0.00 4.63
6735 7816 4.003788 CGTGCCCTTCCTCCGTGT 62.004 66.667 0.00 0.00 0.00 4.49
6752 7833 2.717595 CGTGTCGTCATTTGTGCTAACG 60.718 50.000 0.00 0.00 34.80 3.18
6800 7881 4.113354 GACATTAGAGTTGAACTAGCCCG 58.887 47.826 0.00 0.00 0.00 6.13
6801 7882 3.514309 ACATTAGAGTTGAACTAGCCCGT 59.486 43.478 0.00 0.00 0.00 5.28
6856 7937 1.204941 ACTAGCTCTTAACCAGTGGCG 59.795 52.381 9.78 0.00 0.00 5.69
6860 7941 1.197036 GCTCTTAACCAGTGGCGAAAC 59.803 52.381 9.78 0.00 0.00 2.78
6861 7942 2.489971 CTCTTAACCAGTGGCGAAACA 58.510 47.619 9.78 0.00 0.00 2.83
6872 7953 0.673956 GGCGAAACACTTCCCCTCTC 60.674 60.000 0.00 0.00 0.00 3.20
6880 7961 1.230497 CTTCCCCTCTCGCCTCCTA 59.770 63.158 0.00 0.00 0.00 2.94
6881 7962 1.076192 TTCCCCTCTCGCCTCCTAC 60.076 63.158 0.00 0.00 0.00 3.18
6882 7963 2.522193 CCCCTCTCGCCTCCTACC 60.522 72.222 0.00 0.00 0.00 3.18
6890 7971 0.784495 TCGCCTCCTACCCCTATCAT 59.216 55.000 0.00 0.00 0.00 2.45
6892 7973 1.272760 CGCCTCCTACCCCTATCATCT 60.273 57.143 0.00 0.00 0.00 2.90
6898 7979 5.188751 CCTCCTACCCCTATCATCTTGAATC 59.811 48.000 0.00 0.00 0.00 2.52
6904 7985 3.579709 CCTATCATCTTGAATCGACCGG 58.420 50.000 0.00 0.00 0.00 5.28
6905 7986 3.005897 CCTATCATCTTGAATCGACCGGT 59.994 47.826 6.92 6.92 0.00 5.28
6906 7987 2.293677 TCATCTTGAATCGACCGGTG 57.706 50.000 14.63 4.45 0.00 4.94
6908 7989 0.806102 ATCTTGAATCGACCGGTGCG 60.806 55.000 14.63 16.22 0.00 5.34
6909 7990 3.083600 CTTGAATCGACCGGTGCGC 62.084 63.158 14.63 0.00 0.00 6.09
6921 8002 1.962306 GGTGCGCCCGTTTAAGTCA 60.962 57.895 4.45 0.00 0.00 3.41
6922 8003 1.303091 GGTGCGCCCGTTTAAGTCAT 61.303 55.000 4.45 0.00 0.00 3.06
6931 8022 4.794169 CCCGTTTAAGTCATTCCACTTTG 58.206 43.478 0.00 0.00 37.75 2.77
6951 8042 1.486726 GACTAGTAGGGCATTGGCAGT 59.513 52.381 12.70 6.22 43.71 4.40
6967 8058 2.959071 GTCGCTGAGGCAGATCGC 60.959 66.667 0.00 1.55 38.60 4.58
6977 8068 1.672356 GCAGATCGCCGGGCATAAT 60.672 57.895 20.71 9.04 32.94 1.28
6978 8069 1.639298 GCAGATCGCCGGGCATAATC 61.639 60.000 20.71 17.18 32.94 1.75
6979 8070 1.079819 AGATCGCCGGGCATAATCG 60.080 57.895 20.71 0.92 0.00 3.34
6980 8071 1.374252 GATCGCCGGGCATAATCGT 60.374 57.895 20.71 0.00 0.00 3.73
6999 8090 4.729918 GTCCCTGCCAGCACCCAG 62.730 72.222 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.763897 CCCCATGAACTCCCTTTAAGTTG 59.236 47.826 0.00 0.00 37.10 3.16
17 19 0.839946 CGATCCCCATGAACTCCCTT 59.160 55.000 0.00 0.00 0.00 3.95
25 27 2.491693 GCTTGTTTTTCGATCCCCATGA 59.508 45.455 0.00 0.00 0.00 3.07
26 28 2.230992 TGCTTGTTTTTCGATCCCCATG 59.769 45.455 0.00 0.00 0.00 3.66
27 29 2.524306 TGCTTGTTTTTCGATCCCCAT 58.476 42.857 0.00 0.00 0.00 4.00
29 31 3.592898 AATGCTTGTTTTTCGATCCCC 57.407 42.857 0.00 0.00 0.00 4.81
45 49 3.556775 TGTTTCTCAAGCAAAGCAAATGC 59.443 39.130 0.00 0.00 44.15 3.56
101 105 4.458951 GAAGGATCGATCAACATTTCCG 57.541 45.455 25.93 0.00 0.00 4.30
168 422 9.578306 CGTATTCAGTATTAAGAGTACGTAGTG 57.422 37.037 7.86 0.00 45.73 2.74
196 452 9.106070 GAGTTCCCTCATTTACGTTACATTATT 57.894 33.333 0.00 0.00 37.67 1.40
197 453 7.713942 GGAGTTCCCTCATTTACGTTACATTAT 59.286 37.037 0.00 0.00 39.64 1.28
238 530 3.176578 ATGACCAACGTACGCGCG 61.177 61.111 30.96 30.96 42.83 6.86
239 531 2.394136 CATGACCAACGTACGCGC 59.606 61.111 16.72 0.00 42.83 6.86
240 532 2.449525 CCCATGACCAACGTACGCG 61.450 63.158 16.72 3.53 44.93 6.01
241 533 0.671163 TTCCCATGACCAACGTACGC 60.671 55.000 16.72 0.00 0.00 4.42
245 537 0.981183 TAGCTTCCCATGACCAACGT 59.019 50.000 0.00 0.00 0.00 3.99
292 592 3.070446 TGACGTCATTGTATACCCATCCC 59.930 47.826 15.76 0.00 0.00 3.85
299 599 4.110482 GTGGGAGTGACGTCATTGTATAC 58.890 47.826 23.12 12.85 0.00 1.47
300 600 3.181494 CGTGGGAGTGACGTCATTGTATA 60.181 47.826 23.12 4.45 32.06 1.47
336 652 2.486918 TGGCAGCATCGATCATTGTAG 58.513 47.619 0.00 0.00 0.00 2.74
341 657 3.119602 GCAAATATGGCAGCATCGATCAT 60.120 43.478 0.00 0.00 0.00 2.45
391 707 3.399330 CAGGTCAACACGGAAACATAGT 58.601 45.455 0.00 0.00 0.00 2.12
409 725 4.559862 AGACAGTTAAGATCAACCCAGG 57.440 45.455 0.00 0.00 0.00 4.45
499 999 9.105844 ACTAGCTCACATATATATTTGGGAGTT 57.894 33.333 26.48 24.22 43.78 3.01
500 1000 8.535335 CACTAGCTCACATATATATTTGGGAGT 58.465 37.037 26.48 18.77 43.78 3.85
502 1002 8.435931 ACACTAGCTCACATATATATTTGGGA 57.564 34.615 12.13 7.74 0.00 4.37
503 1003 7.766278 GGACACTAGCTCACATATATATTTGGG 59.234 40.741 8.64 6.70 0.00 4.12
504 1004 7.766278 GGGACACTAGCTCACATATATATTTGG 59.234 40.741 8.64 2.32 0.00 3.28
507 1007 8.314751 GTTGGGACACTAGCTCACATATATATT 58.685 37.037 0.00 0.00 39.29 1.28
508 1008 7.093289 GGTTGGGACACTAGCTCACATATATAT 60.093 40.741 0.00 0.00 39.29 0.86
509 1009 6.210784 GGTTGGGACACTAGCTCACATATATA 59.789 42.308 0.00 0.00 39.29 0.86
510 1010 5.012148 GGTTGGGACACTAGCTCACATATAT 59.988 44.000 0.00 0.00 39.29 0.86
531 1041 3.829311 TTCTCCCCAGGCCCAGGTT 62.829 63.158 10.71 0.00 0.00 3.50
738 1400 4.276739 GCTTGCTCGATCTGCGCG 62.277 66.667 0.00 0.00 40.61 6.86
752 1428 3.426568 GCGCTTCCTTGCTCGCTT 61.427 61.111 0.00 0.00 43.70 4.68
875 1551 0.387202 AAGCAGATCGATGGAGGACG 59.613 55.000 0.54 0.00 0.00 4.79
923 1608 1.682849 GGCATGGGGAGTGTGTGTA 59.317 57.895 0.00 0.00 0.00 2.90
945 1645 2.093553 AGAAGAGAGCAAGGCAAGCTAG 60.094 50.000 3.61 0.00 43.58 3.42
960 1660 1.227002 GCGGCCGGAGTAAGAAGAG 60.227 63.158 29.38 0.00 0.00 2.85
1085 1791 1.229951 TTGAGGAGGAGGGCATGGT 60.230 57.895 0.00 0.00 0.00 3.55
1124 1830 8.586879 AGAGAAATTAAGGGGAAGAAAATGAG 57.413 34.615 0.00 0.00 0.00 2.90
1127 1843 9.029368 CAAGAGAGAAATTAAGGGGAAGAAAAT 57.971 33.333 0.00 0.00 0.00 1.82
1129 1845 6.434340 GCAAGAGAGAAATTAAGGGGAAGAAA 59.566 38.462 0.00 0.00 0.00 2.52
1134 1850 4.383118 CGAGCAAGAGAGAAATTAAGGGGA 60.383 45.833 0.00 0.00 0.00 4.81
1137 1853 6.045318 TGATCGAGCAAGAGAGAAATTAAGG 58.955 40.000 0.00 0.00 0.00 2.69
1145 1861 3.005791 TGTGTTTGATCGAGCAAGAGAGA 59.994 43.478 16.49 0.00 0.00 3.10
1146 1862 3.320626 TGTGTTTGATCGAGCAAGAGAG 58.679 45.455 16.49 0.00 0.00 3.20
1148 1864 3.248363 TGTTGTGTTTGATCGAGCAAGAG 59.752 43.478 16.49 0.00 0.00 2.85
1149 1865 3.002246 GTGTTGTGTTTGATCGAGCAAGA 59.998 43.478 16.49 4.68 0.00 3.02
1150 1866 3.291585 GTGTTGTGTTTGATCGAGCAAG 58.708 45.455 16.49 0.00 0.00 4.01
1154 1870 1.398451 GGCGTGTTGTGTTTGATCGAG 60.398 52.381 0.00 0.00 0.00 4.04
1157 1873 0.951558 AGGGCGTGTTGTGTTTGATC 59.048 50.000 0.00 0.00 0.00 2.92
1158 1874 1.066908 CAAGGGCGTGTTGTGTTTGAT 59.933 47.619 0.00 0.00 0.00 2.57
1159 1875 0.453793 CAAGGGCGTGTTGTGTTTGA 59.546 50.000 0.00 0.00 0.00 2.69
1162 1878 1.066908 CAATCAAGGGCGTGTTGTGTT 59.933 47.619 0.00 0.00 0.00 3.32
1163 1879 0.667993 CAATCAAGGGCGTGTTGTGT 59.332 50.000 0.00 0.00 0.00 3.72
1165 1881 1.909700 ATCAATCAAGGGCGTGTTGT 58.090 45.000 0.00 0.00 0.00 3.32
1167 1883 3.157087 AGAAATCAATCAAGGGCGTGTT 58.843 40.909 0.00 0.00 0.00 3.32
1168 1884 2.749621 GAGAAATCAATCAAGGGCGTGT 59.250 45.455 0.00 0.00 0.00 4.49
1170 1886 2.009774 CGAGAAATCAATCAAGGGCGT 58.990 47.619 0.00 0.00 0.00 5.68
1171 1887 2.009774 ACGAGAAATCAATCAAGGGCG 58.990 47.619 0.00 0.00 0.00 6.13
1172 1888 2.478539 GCACGAGAAATCAATCAAGGGC 60.479 50.000 0.00 0.00 0.00 5.19
1174 1890 4.691860 AAGCACGAGAAATCAATCAAGG 57.308 40.909 0.00 0.00 0.00 3.61
1175 1891 7.219535 CCATTAAAGCACGAGAAATCAATCAAG 59.780 37.037 0.00 0.00 0.00 3.02
1176 1892 7.028962 CCATTAAAGCACGAGAAATCAATCAA 58.971 34.615 0.00 0.00 0.00 2.57
1177 1893 6.554419 CCATTAAAGCACGAGAAATCAATCA 58.446 36.000 0.00 0.00 0.00 2.57
1178 1894 5.456822 GCCATTAAAGCACGAGAAATCAATC 59.543 40.000 0.00 0.00 0.00 2.67
1179 1895 5.105797 TGCCATTAAAGCACGAGAAATCAAT 60.106 36.000 0.00 0.00 34.69 2.57
1180 1896 4.217334 TGCCATTAAAGCACGAGAAATCAA 59.783 37.500 0.00 0.00 34.69 2.57
1181 1897 3.755905 TGCCATTAAAGCACGAGAAATCA 59.244 39.130 0.00 0.00 34.69 2.57
1184 1900 3.407698 TCTGCCATTAAAGCACGAGAAA 58.592 40.909 0.00 0.00 36.01 2.52
1185 1901 3.002791 CTCTGCCATTAAAGCACGAGAA 58.997 45.455 16.55 0.00 37.53 2.87
1187 1903 1.667724 CCTCTGCCATTAAAGCACGAG 59.332 52.381 15.55 15.55 36.01 4.18
1189 1905 1.667724 CTCCTCTGCCATTAAAGCACG 59.332 52.381 0.00 0.00 36.01 5.34
1190 1906 2.019984 CCTCCTCTGCCATTAAAGCAC 58.980 52.381 0.00 0.00 36.01 4.40
1192 1908 2.685388 GTTCCTCCTCTGCCATTAAAGC 59.315 50.000 0.00 0.00 0.00 3.51
1193 1909 3.944015 CAGTTCCTCCTCTGCCATTAAAG 59.056 47.826 0.00 0.00 0.00 1.85
1197 1913 0.622665 CCAGTTCCTCCTCTGCCATT 59.377 55.000 0.00 0.00 0.00 3.16
1198 1914 0.252881 TCCAGTTCCTCCTCTGCCAT 60.253 55.000 0.00 0.00 0.00 4.40
1200 1916 0.251634 CTTCCAGTTCCTCCTCTGCC 59.748 60.000 0.00 0.00 0.00 4.85
1346 2065 4.101448 GGGCGTGGAGTGCTGGAT 62.101 66.667 0.00 0.00 0.00 3.41
1365 2084 2.187685 CGCAGCTCATGGCCTGTA 59.812 61.111 3.32 0.00 43.05 2.74
1366 2085 3.677284 CTCGCAGCTCATGGCCTGT 62.677 63.158 3.32 0.00 43.05 4.00
1488 2207 3.062466 TGAGGAGCACCGAGACCG 61.062 66.667 0.00 0.00 41.83 4.79
1489 2208 2.574399 GTGAGGAGCACCGAGACC 59.426 66.667 0.00 0.00 41.78 3.85
1545 2264 6.142480 CGTCGTTGGAGAGTGCTATTATTTAG 59.858 42.308 0.00 0.00 0.00 1.85
1556 2275 0.591659 TGAGTCGTCGTTGGAGAGTG 59.408 55.000 0.00 0.00 0.00 3.51
1602 2322 1.795286 GCCTGTCAGTCGAGAAAGTTG 59.205 52.381 0.00 0.00 0.00 3.16
1612 2332 0.322008 CCTTCCAAGGCCTGTCAGTC 60.322 60.000 5.69 0.00 39.76 3.51
1614 2334 1.001641 CCCTTCCAAGGCCTGTCAG 60.002 63.158 5.69 0.00 45.10 3.51
1615 2335 2.538141 CCCCTTCCAAGGCCTGTCA 61.538 63.158 5.69 0.00 45.10 3.58
1691 2414 2.834549 GAGGTGGTCAAGAGAGGATGAA 59.165 50.000 0.00 0.00 0.00 2.57
1717 2440 4.058817 CAAACAACTCACAGGGACTACTC 58.941 47.826 0.00 0.00 36.02 2.59
1759 2483 7.544622 ACGCCTTTCGCATAGAAGAATATATA 58.455 34.615 0.00 0.00 43.23 0.86
1760 2484 6.398918 ACGCCTTTCGCATAGAAGAATATAT 58.601 36.000 0.00 0.00 43.23 0.86
1761 2485 5.779922 ACGCCTTTCGCATAGAAGAATATA 58.220 37.500 0.00 0.00 43.23 0.86
1762 2486 4.632153 ACGCCTTTCGCATAGAAGAATAT 58.368 39.130 0.00 0.00 43.23 1.28
1772 2496 1.732941 TCAATGTACGCCTTTCGCAT 58.267 45.000 0.00 0.00 43.23 4.73
1775 2499 4.033932 TCAATGATCAATGTACGCCTTTCG 59.966 41.667 10.52 0.00 45.38 3.46
1779 2503 4.516698 GGATTCAATGATCAATGTACGCCT 59.483 41.667 10.52 0.00 0.00 5.52
1781 2505 4.024893 ACGGATTCAATGATCAATGTACGC 60.025 41.667 10.52 0.00 0.00 4.42
1910 2634 1.192980 GAAACATTGCGCTTTTGCCAG 59.807 47.619 9.73 0.00 43.93 4.85
2001 2725 9.830975 TGTAAACACTGCATGATACAGTATAAT 57.169 29.630 0.00 0.00 46.44 1.28
2002 2726 9.830975 ATGTAAACACTGCATGATACAGTATAA 57.169 29.630 0.00 0.00 46.44 0.98
2003 2727 9.476202 GATGTAAACACTGCATGATACAGTATA 57.524 33.333 0.00 0.00 46.44 1.47
2004 2728 7.442364 GGATGTAAACACTGCATGATACAGTAT 59.558 37.037 0.00 0.00 46.44 2.12
2005 2729 6.761242 GGATGTAAACACTGCATGATACAGTA 59.239 38.462 0.00 0.00 46.44 2.74
2007 2731 5.585844 TGGATGTAAACACTGCATGATACAG 59.414 40.000 0.00 0.00 37.47 2.74
2008 2732 5.495640 TGGATGTAAACACTGCATGATACA 58.504 37.500 0.00 14.67 38.00 2.29
2009 2733 6.260714 TCATGGATGTAAACACTGCATGATAC 59.739 38.462 17.28 0.00 41.08 2.24
2014 2738 6.294342 GCATATCATGGATGTAAACACTGCAT 60.294 38.462 9.41 0.00 32.29 3.96
2034 2758 5.481473 AGGAAAGGAACAACAACATGCATAT 59.519 36.000 0.00 0.00 0.00 1.78
2035 2759 4.832266 AGGAAAGGAACAACAACATGCATA 59.168 37.500 0.00 0.00 0.00 3.14
2082 2806 5.700402 AGAAGGATTAAAAGCTGCTAGGA 57.300 39.130 0.90 0.00 0.00 2.94
2084 2808 7.622893 AAGAAGAAGGATTAAAAGCTGCTAG 57.377 36.000 0.90 0.00 0.00 3.42
2099 2823 9.196552 GTTCCATTAATTTCACAAAGAAGAAGG 57.803 33.333 0.00 0.00 37.57 3.46
2292 3019 9.699703 AAGAAGAAAGAACTAGTACATCTGAAC 57.300 33.333 0.00 0.00 0.00 3.18
2389 3198 8.856153 TGTACAAAATGTATACATGGAACAGT 57.144 30.769 18.94 13.32 37.10 3.55
2405 3214 4.022849 GCTGAAGCTGGAGTTGTACAAAAT 60.023 41.667 10.51 1.68 38.21 1.82
2409 3218 1.416030 TGCTGAAGCTGGAGTTGTACA 59.584 47.619 3.61 0.00 42.66 2.90
2440 3249 3.243839 GCAAAACTGTCATGGAATGGTGT 60.244 43.478 0.00 0.00 46.73 4.16
2492 3301 0.953727 TGCAGGCAAGCTTGTAAGTG 59.046 50.000 26.55 18.41 34.99 3.16
2501 3310 0.600057 AAAGTAAGCTGCAGGCAAGC 59.400 50.000 17.12 0.36 44.79 4.01
2503 3312 1.979855 TGAAAGTAAGCTGCAGGCAA 58.020 45.000 17.12 0.00 44.79 4.52
2563 3372 8.290325 GCGGTAATCCTCCATTTCTAAAAATAG 58.710 37.037 0.00 0.00 33.27 1.73
2564 3373 7.229907 GGCGGTAATCCTCCATTTCTAAAAATA 59.770 37.037 0.00 0.00 38.40 1.40
2565 3374 6.040504 GGCGGTAATCCTCCATTTCTAAAAAT 59.959 38.462 0.00 0.00 38.40 1.82
2576 3396 3.857038 GCCGGCGGTAATCCTCCA 61.857 66.667 28.82 0.00 38.43 3.86
2677 3497 2.205022 TTTCTGCATTCACTCCTGGG 57.795 50.000 0.00 0.00 0.00 4.45
2746 3566 0.036858 GGAGAGTTGTGAGGTCCAGC 60.037 60.000 0.00 0.00 0.00 4.85
2773 3593 1.338200 ACCGTCCATGTGAAGAAGAGC 60.338 52.381 0.00 0.00 0.00 4.09
2900 3840 8.017418 ACCTGGAAATGAAAACAACTGAAATA 57.983 30.769 0.00 0.00 0.00 1.40
2963 3903 9.187996 TCCATGCATTTTCATCATTAGTCTTAA 57.812 29.630 0.00 0.00 0.00 1.85
3134 4074 3.060272 GCGTGGATTCGATTGACACATAG 60.060 47.826 9.61 0.00 32.58 2.23
3146 4086 2.892425 GGCCTCTGCGTGGATTCG 60.892 66.667 0.00 0.00 38.85 3.34
3297 4246 2.743636 AGAATGACGCGAGGAGAAAA 57.256 45.000 15.93 0.00 0.00 2.29
3378 4327 2.806945 TAAAAGAGGGAGGCCACATG 57.193 50.000 5.01 0.00 0.00 3.21
3408 4357 5.069318 TGCAACACAGAAAATACTGATCCA 58.931 37.500 0.00 0.00 40.63 3.41
4110 5064 7.396418 TCCTGTTATTTCCACGGTATACTTTT 58.604 34.615 2.25 0.00 0.00 2.27
4116 5070 4.520179 GGTTCCTGTTATTTCCACGGTAT 58.480 43.478 0.00 0.00 0.00 2.73
4140 5094 0.318699 CTCTCACCGCGAGTTTGTCA 60.319 55.000 8.23 0.00 42.88 3.58
4146 5100 2.600769 AACCCTCTCACCGCGAGT 60.601 61.111 8.23 0.00 42.88 4.18
4591 5582 3.958798 CCATCTTCAGAAGGGAAATGCAT 59.041 43.478 10.42 0.00 29.75 3.96
4599 5590 4.144297 TGACAAAACCATCTTCAGAAGGG 58.856 43.478 10.42 7.08 37.24 3.95
4683 5674 3.446873 ACTGTAGATGCTCTCTTCCTGTG 59.553 47.826 0.00 0.00 35.28 3.66
4703 5694 6.238648 AGGTTCTTCATTCGACCATAAAACT 58.761 36.000 0.00 0.00 34.60 2.66
4725 5716 0.746063 CTAGAGCAGCACCTGAGAGG 59.254 60.000 0.00 0.00 42.49 3.69
4861 5926 4.591321 TTCCTCAACTGCCTGGATTAAT 57.409 40.909 0.00 0.00 0.00 1.40
4876 5941 1.902508 ACGCTCTTCAAGGATTCCTCA 59.097 47.619 5.48 0.00 30.89 3.86
4948 6013 1.131883 CTGAGCCTTCTTTTCATGCCG 59.868 52.381 0.00 0.00 0.00 5.69
5128 6195 6.302269 GTTCCACAGATCATTCCTGGATATT 58.698 40.000 0.00 0.00 36.03 1.28
5222 6289 2.044551 CTGGAGGAAAGGCAGGGC 60.045 66.667 0.00 0.00 0.00 5.19
5291 6360 2.613223 GGAGGGAGTATTTAGCATCCGC 60.613 54.545 0.00 0.00 38.99 5.54
5293 6362 2.633481 ACGGAGGGAGTATTTAGCATCC 59.367 50.000 0.00 0.00 0.00 3.51
5305 6374 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
5306 6375 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
5307 6376 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
5308 6377 5.621193 ACATCTTATATTTTGGGACGGAGG 58.379 41.667 0.00 0.00 0.00 4.30
5309 6378 7.568199 AAACATCTTATATTTTGGGACGGAG 57.432 36.000 0.00 0.00 0.00 4.63
5310 6379 7.948034 AAAACATCTTATATTTTGGGACGGA 57.052 32.000 0.00 0.00 0.00 4.69
5355 6424 9.297037 CCTCCGTCCCATAATTTAAGATATTTT 57.703 33.333 0.00 0.00 0.00 1.82
5356 6425 7.888546 CCCTCCGTCCCATAATTTAAGATATTT 59.111 37.037 0.00 0.00 0.00 1.40
5357 6426 7.238933 TCCCTCCGTCCCATAATTTAAGATATT 59.761 37.037 0.00 0.00 0.00 1.28
5358 6427 6.733807 TCCCTCCGTCCCATAATTTAAGATAT 59.266 38.462 0.00 0.00 0.00 1.63
5359 6428 6.086095 TCCCTCCGTCCCATAATTTAAGATA 58.914 40.000 0.00 0.00 0.00 1.98
5360 6429 4.911522 TCCCTCCGTCCCATAATTTAAGAT 59.088 41.667 0.00 0.00 0.00 2.40
5361 6430 4.300345 TCCCTCCGTCCCATAATTTAAGA 58.700 43.478 0.00 0.00 0.00 2.10
5362 6431 4.102681 ACTCCCTCCGTCCCATAATTTAAG 59.897 45.833 0.00 0.00 0.00 1.85
5363 6432 4.042174 ACTCCCTCCGTCCCATAATTTAA 58.958 43.478 0.00 0.00 0.00 1.52
5364 6433 3.660959 ACTCCCTCCGTCCCATAATTTA 58.339 45.455 0.00 0.00 0.00 1.40
5365 6434 2.488836 ACTCCCTCCGTCCCATAATTT 58.511 47.619 0.00 0.00 0.00 1.82
5366 6435 2.191981 ACTCCCTCCGTCCCATAATT 57.808 50.000 0.00 0.00 0.00 1.40
5367 6436 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
5368 6437 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
5369 6438 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
5370 6439 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
5371 6440 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5372 6441 2.158490 AGATTACTACTCCCTCCGTCCC 60.158 54.545 0.00 0.00 0.00 4.46
5373 6442 2.885894 CAGATTACTACTCCCTCCGTCC 59.114 54.545 0.00 0.00 0.00 4.79
5374 6443 2.293955 GCAGATTACTACTCCCTCCGTC 59.706 54.545 0.00 0.00 0.00 4.79
5375 6444 2.308690 GCAGATTACTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
5376 6445 2.307768 TGCAGATTACTACTCCCTCCG 58.692 52.381 0.00 0.00 0.00 4.63
5377 6446 4.965200 AATGCAGATTACTACTCCCTCC 57.035 45.455 0.00 0.00 0.00 4.30
5378 6447 7.988028 AGTTTAAATGCAGATTACTACTCCCTC 59.012 37.037 0.00 0.00 0.00 4.30
5379 6448 7.862675 AGTTTAAATGCAGATTACTACTCCCT 58.137 34.615 0.00 0.00 0.00 4.20
5380 6449 7.769044 TGAGTTTAAATGCAGATTACTACTCCC 59.231 37.037 20.17 8.99 30.54 4.30
5381 6450 8.604890 GTGAGTTTAAATGCAGATTACTACTCC 58.395 37.037 20.17 13.85 30.54 3.85
5382 6451 9.372369 AGTGAGTTTAAATGCAGATTACTACTC 57.628 33.333 18.32 18.32 31.37 2.59
5383 6452 9.726438 AAGTGAGTTTAAATGCAGATTACTACT 57.274 29.630 0.00 1.18 0.00 2.57
5384 6453 9.760660 CAAGTGAGTTTAAATGCAGATTACTAC 57.239 33.333 0.00 0.00 0.00 2.73
5417 6486 2.916640 TGAATGCGCTGGAATGTCATA 58.083 42.857 9.73 0.00 0.00 2.15
5418 6487 1.753930 TGAATGCGCTGGAATGTCAT 58.246 45.000 9.73 0.00 0.00 3.06
5426 6495 1.065102 CTCTTCCATTGAATGCGCTGG 59.935 52.381 9.73 6.90 0.00 4.85
5452 6521 1.857318 CGACCCGATCGCATAGCTCT 61.857 60.000 10.32 0.00 45.52 4.09
5613 6683 8.122472 AGACCAAACCATAATTTTCAGGTAAG 57.878 34.615 0.00 0.00 33.15 2.34
5695 6768 4.114073 TGTCTTCAGCTGCAACATTTTTG 58.886 39.130 9.47 0.00 0.00 2.44
5831 6904 1.587054 CTCGAACTTCTGCGTCCCT 59.413 57.895 0.00 0.00 0.00 4.20
6035 7111 1.222936 CTCCACCCTAAGCTGGCTG 59.777 63.158 0.00 0.00 0.00 4.85
6100 7176 7.121315 GGCAGTTCAGTTCATTTCTAACCTAAT 59.879 37.037 0.00 0.00 0.00 1.73
6160 7236 3.489785 ACGTCGATGAAACTTTGACTGTC 59.510 43.478 12.58 0.00 0.00 3.51
6199 7275 1.347320 GAATCTTCCGTGACACCGAC 58.653 55.000 0.00 0.00 0.00 4.79
6209 7285 6.828502 TGTGAGATAATTTCGAATCTTCCG 57.171 37.500 0.00 0.00 0.00 4.30
6229 7305 5.748152 CCAAAAAGTTTAGGTGTGTGATGTG 59.252 40.000 0.00 0.00 0.00 3.21
6257 7333 4.079980 TGGATTTCAGACGGTTTGAGAA 57.920 40.909 1.45 1.28 0.00 2.87
6258 7334 3.762407 TGGATTTCAGACGGTTTGAGA 57.238 42.857 1.45 0.00 0.00 3.27
6321 7399 0.104120 CGTATTGGCCAGATCCACGA 59.896 55.000 5.11 0.00 35.50 4.35
6339 7417 1.672356 CCCAGAGGAAGTGCCAACG 60.672 63.158 0.00 0.00 40.02 4.10
6342 7420 1.455849 CAACCCAGAGGAAGTGCCA 59.544 57.895 0.00 0.00 40.02 4.92
6349 7427 2.905996 AATGCCGCAACCCAGAGGA 61.906 57.895 0.00 0.00 36.73 3.71
6369 7447 1.267121 TTCAGAGACTGTAGGCCCAC 58.733 55.000 0.00 0.00 32.61 4.61
6370 7448 1.902508 CTTTCAGAGACTGTAGGCCCA 59.097 52.381 0.00 0.00 32.61 5.36
6376 7454 5.509840 GGTCAAAGCTCTTTCAGAGACTGTA 60.510 44.000 4.89 0.00 45.07 2.74
6379 7457 3.645687 AGGTCAAAGCTCTTTCAGAGACT 59.354 43.478 4.89 0.00 45.07 3.24
6391 7470 2.746472 GCCGGATCATAAGGTCAAAGCT 60.746 50.000 5.05 0.00 0.00 3.74
6414 7493 1.159713 TCGCCCATCATCATCGTTGC 61.160 55.000 0.00 0.00 0.00 4.17
6420 7499 3.428413 TTGATCATCGCCCATCATCAT 57.572 42.857 0.00 0.00 0.00 2.45
6457 7538 4.160439 AGAGCACAAAGGAATCATCGACTA 59.840 41.667 0.00 0.00 0.00 2.59
6494 7575 0.615331 ACAGTCTGATGCGGGAATGT 59.385 50.000 6.91 0.00 36.22 2.71
6526 7607 2.741985 CGTGCATCACCCTTCGCA 60.742 61.111 0.00 0.00 0.00 5.10
6544 7625 0.815615 GGGGAGGACACGATCAATGC 60.816 60.000 0.00 0.00 0.00 3.56
6560 7641 5.704053 GTGAAAACATATTATACCGAGGGGG 59.296 44.000 0.00 0.00 43.62 5.40
6566 7647 7.709182 TCTCACCTGTGAAAACATATTATACCG 59.291 37.037 1.14 0.00 39.39 4.02
6575 7656 4.526970 ACAGTTCTCACCTGTGAAAACAT 58.473 39.130 16.39 4.03 41.62 2.71
6576 7657 3.950397 ACAGTTCTCACCTGTGAAAACA 58.050 40.909 16.39 0.00 41.62 2.83
6588 7669 2.497675 GCCACTAGATCCACAGTTCTCA 59.502 50.000 0.00 0.00 0.00 3.27
6597 7678 2.805546 GCGTCGCCACTAGATCCA 59.194 61.111 5.75 0.00 0.00 3.41
6601 7682 4.111016 CCACGCGTCGCCACTAGA 62.111 66.667 9.86 0.00 0.00 2.43
6621 7702 5.754782 TGGTTAATCTACATCAGGCAACAT 58.245 37.500 0.00 0.00 41.41 2.71
6627 7708 8.964476 ACAACTAATGGTTAATCTACATCAGG 57.036 34.615 0.00 0.00 36.23 3.86
6665 7746 2.048127 GTCCTGCACCGTCCTCAC 60.048 66.667 0.00 0.00 0.00 3.51
6666 7747 2.523168 TGTCCTGCACCGTCCTCA 60.523 61.111 0.00 0.00 0.00 3.86
6667 7748 2.048127 GTGTCCTGCACCGTCCTC 60.048 66.667 0.00 0.00 42.10 3.71
6714 7795 2.266055 GGAGGAAGGGCACGACAG 59.734 66.667 0.00 0.00 0.00 3.51
6732 7813 2.473609 TCGTTAGCACAAATGACGACAC 59.526 45.455 0.00 0.00 37.76 3.67
6752 7833 2.770164 TTGAACTAGGGCAAGAGCTC 57.230 50.000 5.27 5.27 43.44 4.09
6761 7842 8.792830 TCTAATGTCAGAAAATTGAACTAGGG 57.207 34.615 0.00 0.00 0.00 3.53
6796 7877 1.886886 TTTGAACTAGGACAACGGGC 58.113 50.000 0.00 0.00 0.00 6.13
6839 7920 0.685097 TTCGCCACTGGTTAAGAGCT 59.315 50.000 0.00 0.00 0.00 4.09
6856 7937 0.673956 GGCGAGAGGGGAAGTGTTTC 60.674 60.000 0.00 0.00 0.00 2.78
6860 7941 2.726351 GGAGGCGAGAGGGGAAGTG 61.726 68.421 0.00 0.00 0.00 3.16
6861 7942 1.581923 TAGGAGGCGAGAGGGGAAGT 61.582 60.000 0.00 0.00 0.00 3.01
6872 7953 1.187087 GATGATAGGGGTAGGAGGCG 58.813 60.000 0.00 0.00 0.00 5.52
6880 7961 3.325135 GGTCGATTCAAGATGATAGGGGT 59.675 47.826 0.00 0.00 0.00 4.95
6881 7962 3.615110 CGGTCGATTCAAGATGATAGGGG 60.615 52.174 0.00 0.00 0.00 4.79
6882 7963 3.579709 CGGTCGATTCAAGATGATAGGG 58.420 50.000 0.00 0.00 0.00 3.53
6890 7971 1.445410 CGCACCGGTCGATTCAAGA 60.445 57.895 17.91 0.00 0.00 3.02
6892 7973 3.115892 GCGCACCGGTCGATTCAA 61.116 61.111 24.32 0.00 0.00 2.69
6904 7985 0.519961 AATGACTTAAACGGGCGCAC 59.480 50.000 10.83 3.71 0.00 5.34
6905 7986 0.800012 GAATGACTTAAACGGGCGCA 59.200 50.000 10.83 0.00 0.00 6.09
6906 7987 0.098200 GGAATGACTTAAACGGGCGC 59.902 55.000 0.00 0.00 0.00 6.53
6908 7989 2.433436 AGTGGAATGACTTAAACGGGC 58.567 47.619 0.00 0.00 0.00 6.13
6909 7990 4.517453 TCAAAGTGGAATGACTTAAACGGG 59.483 41.667 0.00 0.00 35.01 5.28
6910 7991 5.449304 GTCAAAGTGGAATGACTTAAACGG 58.551 41.667 0.00 0.00 42.07 4.44
6918 7999 5.420409 CCCTACTAGTCAAAGTGGAATGAC 58.580 45.833 0.00 0.00 44.92 3.06
6919 8000 4.081087 GCCCTACTAGTCAAAGTGGAATGA 60.081 45.833 0.00 0.00 29.97 2.57
6921 8002 3.844211 TGCCCTACTAGTCAAAGTGGAAT 59.156 43.478 0.00 0.00 29.97 3.01
6922 8003 3.244582 TGCCCTACTAGTCAAAGTGGAA 58.755 45.455 0.00 0.00 29.97 3.53
6931 8022 1.486726 ACTGCCAATGCCCTACTAGTC 59.513 52.381 0.00 0.00 36.33 2.59
6967 8058 1.663702 GGACGACGATTATGCCCGG 60.664 63.158 0.00 0.00 0.00 5.73
6974 8065 1.813859 CTGGCAGGGACGACGATTA 59.186 57.895 6.61 0.00 0.00 1.75
6975 8066 2.579201 CTGGCAGGGACGACGATT 59.421 61.111 6.61 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.