Multiple sequence alignment - TraesCS1D01G344600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G344600 chr1D 100.000 6112 0 0 1 6112 433207888 433213999 0.000000e+00 11287.0
1 TraesCS1D01G344600 chr1D 93.846 65 4 0 2810 2874 433210610 433210674 1.400000e-16 99.0
2 TraesCS1D01G344600 chr1D 93.846 65 4 0 2723 2787 433210697 433210761 1.400000e-16 99.0
3 TraesCS1D01G344600 chr1A 93.295 3803 144 53 140 3893 531602825 531606565 0.000000e+00 5507.0
4 TraesCS1D01G344600 chr1A 95.241 1723 54 13 4411 6112 531607051 531608766 0.000000e+00 2702.0
5 TraesCS1D01G344600 chr1A 96.188 341 9 3 3931 4268 531606562 531606901 6.920000e-154 555.0
6 TraesCS1D01G344600 chr1A 92.593 135 2 2 4271 4397 531606937 531607071 2.910000e-43 187.0
7 TraesCS1D01G344600 chr1A 93.846 65 4 0 2723 2787 531605483 531605547 1.400000e-16 99.0
8 TraesCS1D01G344600 chr1A 90.769 65 6 0 2810 2874 531605396 531605460 3.030000e-13 87.9
9 TraesCS1D01G344600 chr1B 93.556 1738 65 14 4411 6112 585072316 585074042 0.000000e+00 2545.0
10 TraesCS1D01G344600 chr1B 91.703 1844 88 24 891 2708 585068924 585070728 0.000000e+00 2497.0
11 TraesCS1D01G344600 chr1B 95.623 1051 38 6 2845 3893 585070783 585071827 0.000000e+00 1679.0
12 TraesCS1D01G344600 chr1B 88.802 643 44 16 238 870 585068052 585068676 0.000000e+00 763.0
13 TraesCS1D01G344600 chr1B 89.266 354 12 10 3931 4268 585071824 585072167 2.630000e-113 420.0
14 TraesCS1D01G344600 chr1B 89.394 132 7 1 4271 4395 585072203 585072334 6.340000e-35 159.0
15 TraesCS1D01G344600 chr3D 76.282 312 61 10 1000 1303 382746778 382747084 2.950000e-33 154.0
16 TraesCS1D01G344600 chr3D 75.781 256 47 9 5862 6108 383110353 383110602 1.390000e-21 115.0
17 TraesCS1D01G344600 chr3A 76.282 312 61 10 1000 1303 505716625 505716931 2.950000e-33 154.0
18 TraesCS1D01G344600 chr3B 75.641 312 63 13 1000 1303 498360299 498360605 6.390000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G344600 chr1D 433207888 433213999 6111 False 3828.333333 11287 95.897333 1 6112 3 chr1D.!!$F1 6111
1 TraesCS1D01G344600 chr1A 531602825 531608766 5941 False 1522.983333 5507 93.655333 140 6112 6 chr1A.!!$F1 5972
2 TraesCS1D01G344600 chr1B 585068052 585074042 5990 False 1343.833333 2545 91.390667 238 6112 6 chr1B.!!$F1 5874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.039527 GACCGCGTTTTGCTGGATTT 60.040 50.000 4.92 0.00 43.27 2.17 F
54 55 0.242825 TCGGACTTTTCGACGATGCT 59.757 50.000 0.00 0.00 0.00 3.79 F
86 87 0.373024 GAAGACGACTACGGGAGACG 59.627 60.000 10.48 10.48 46.82 4.18 F
139 140 0.674895 GCCAACTCGAAGGTGCTCAT 60.675 55.000 0.00 0.00 29.64 2.90 F
698 721 1.128188 ATACCCAGATCCGCTTCCCC 61.128 60.000 0.00 0.00 0.00 4.81 F
837 865 1.183030 AGGGGCGGTTAAAAAGTGGC 61.183 55.000 0.00 0.00 0.00 5.01 F
1594 1879 1.276622 GCCTCTTAGGTGACCTTCCA 58.723 55.000 10.53 0.00 37.80 3.53 F
1708 1994 1.331756 CCTGTTTGCTGATCGTATGGC 59.668 52.381 0.00 0.00 0.00 4.40 F
2782 3071 2.093921 TGGTATCGAAGCCAATTGTCGA 60.094 45.455 18.35 18.35 46.74 4.20 F
3175 3479 2.624838 AGGCTGAGTGTTGATGTTTTGG 59.375 45.455 0.00 0.00 0.00 3.28 F
3908 4213 0.105246 TGCCTTGGTTGGGGTCATTT 60.105 50.000 0.00 0.00 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1876 0.682852 ACCGAGAACGAACCAATGGA 59.317 50.000 6.16 0.00 42.66 3.41 R
1747 2033 1.341187 TGGTGGCATGCTGATTGATCA 60.341 47.619 18.92 0.77 35.16 2.92 R
1883 2169 4.514441 AGAACTTCTGCACAGATTTCACAG 59.486 41.667 17.95 8.49 37.29 3.66 R
1896 2182 5.886960 ACCAATCACATAAGAACTTCTGC 57.113 39.130 0.00 0.00 0.00 4.26 R
2520 2809 0.455972 CCGCGCCGTTGATTGAAAAT 60.456 50.000 0.00 0.00 0.00 1.82 R
2561 2850 3.119708 GCTAGGAACTGCTCAACAAATGG 60.120 47.826 0.00 0.00 41.52 3.16 R
3175 3479 2.928116 GCCGACTGTGTCATTAACCTAC 59.072 50.000 0.00 0.00 32.09 3.18 R
3208 3512 7.157347 CCACATCATTATCCATATATCTCCCG 58.843 42.308 0.00 0.00 0.00 5.14 R
3895 4200 1.066215 GCATGGAAAATGACCCCAACC 60.066 52.381 0.00 0.00 33.15 3.77 R
4158 4464 1.131504 GAACACAGCCGTGACAAAACA 59.868 47.619 7.16 0.00 46.80 2.83 R
5202 5575 0.252197 ACCACCAGGCGATTAGGAAC 59.748 55.000 0.00 0.00 39.06 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.883779 CTTGACATTGATGACCGCG 57.116 52.632 0.00 0.00 0.00 6.46
19 20 1.078709 CTTGACATTGATGACCGCGT 58.921 50.000 4.92 0.00 0.00 6.01
21 22 1.518325 TGACATTGATGACCGCGTTT 58.482 45.000 4.92 0.00 0.00 3.60
22 23 1.876799 TGACATTGATGACCGCGTTTT 59.123 42.857 4.92 0.00 0.00 2.43
24 25 0.984109 CATTGATGACCGCGTTTTGC 59.016 50.000 4.92 0.00 41.47 3.68
25 26 0.881118 ATTGATGACCGCGTTTTGCT 59.119 45.000 4.92 0.00 43.27 3.91
26 27 0.040514 TTGATGACCGCGTTTTGCTG 60.041 50.000 4.92 0.00 43.27 4.41
27 28 1.154225 GATGACCGCGTTTTGCTGG 60.154 57.895 4.92 0.00 43.27 4.85
28 29 1.573829 GATGACCGCGTTTTGCTGGA 61.574 55.000 4.92 0.00 43.27 3.86
29 30 0.960364 ATGACCGCGTTTTGCTGGAT 60.960 50.000 4.92 0.00 43.27 3.41
30 31 1.169661 TGACCGCGTTTTGCTGGATT 61.170 50.000 4.92 0.00 43.27 3.01
31 32 0.039527 GACCGCGTTTTGCTGGATTT 60.040 50.000 4.92 0.00 43.27 2.17
32 33 1.198178 GACCGCGTTTTGCTGGATTTA 59.802 47.619 4.92 0.00 43.27 1.40
33 34 1.816224 ACCGCGTTTTGCTGGATTTAT 59.184 42.857 4.92 0.00 43.27 1.40
34 35 2.230266 ACCGCGTTTTGCTGGATTTATT 59.770 40.909 4.92 0.00 43.27 1.40
35 36 3.249917 CCGCGTTTTGCTGGATTTATTT 58.750 40.909 4.92 0.00 43.27 1.40
36 37 3.303229 CCGCGTTTTGCTGGATTTATTTC 59.697 43.478 4.92 0.00 43.27 2.17
37 38 3.002149 CGCGTTTTGCTGGATTTATTTCG 60.002 43.478 0.00 0.00 43.27 3.46
38 39 3.303229 GCGTTTTGCTGGATTTATTTCGG 59.697 43.478 0.00 0.00 41.73 4.30
39 40 4.728534 CGTTTTGCTGGATTTATTTCGGA 58.271 39.130 0.00 0.00 0.00 4.55
40 41 4.557301 CGTTTTGCTGGATTTATTTCGGAC 59.443 41.667 0.00 0.00 0.00 4.79
41 42 5.619086 CGTTTTGCTGGATTTATTTCGGACT 60.619 40.000 0.00 0.00 0.00 3.85
42 43 5.975693 TTTGCTGGATTTATTTCGGACTT 57.024 34.783 0.00 0.00 0.00 3.01
43 44 5.975693 TTGCTGGATTTATTTCGGACTTT 57.024 34.783 0.00 0.00 0.00 2.66
44 45 5.975693 TGCTGGATTTATTTCGGACTTTT 57.024 34.783 0.00 0.00 0.00 2.27
45 46 5.949735 TGCTGGATTTATTTCGGACTTTTC 58.050 37.500 0.00 0.00 0.00 2.29
46 47 5.028375 GCTGGATTTATTTCGGACTTTTCG 58.972 41.667 0.00 0.00 0.00 3.46
47 48 5.163794 GCTGGATTTATTTCGGACTTTTCGA 60.164 40.000 0.00 0.00 34.62 3.71
48 49 6.173191 TGGATTTATTTCGGACTTTTCGAC 57.827 37.500 0.00 0.00 36.30 4.20
49 50 5.163933 TGGATTTATTTCGGACTTTTCGACG 60.164 40.000 0.00 0.00 36.30 5.12
50 51 5.062558 GGATTTATTTCGGACTTTTCGACGA 59.937 40.000 0.00 0.00 36.30 4.20
51 52 6.238022 GGATTTATTTCGGACTTTTCGACGAT 60.238 38.462 0.00 0.00 36.30 3.73
52 53 3.991605 ATTTCGGACTTTTCGACGATG 57.008 42.857 0.00 0.00 36.30 3.84
53 54 1.065358 TTCGGACTTTTCGACGATGC 58.935 50.000 0.00 0.00 36.30 3.91
54 55 0.242825 TCGGACTTTTCGACGATGCT 59.757 50.000 0.00 0.00 0.00 3.79
55 56 0.640768 CGGACTTTTCGACGATGCTC 59.359 55.000 0.00 0.00 0.00 4.26
56 57 1.710013 GGACTTTTCGACGATGCTCA 58.290 50.000 0.00 0.00 0.00 4.26
57 58 2.271800 GGACTTTTCGACGATGCTCAT 58.728 47.619 0.00 0.00 0.00 2.90
58 59 2.673368 GGACTTTTCGACGATGCTCATT 59.327 45.455 0.00 0.00 0.00 2.57
59 60 3.242123 GGACTTTTCGACGATGCTCATTC 60.242 47.826 0.00 0.00 0.00 2.67
60 61 3.325870 ACTTTTCGACGATGCTCATTCA 58.674 40.909 0.00 0.00 0.00 2.57
61 62 3.369147 ACTTTTCGACGATGCTCATTCAG 59.631 43.478 0.00 0.00 0.00 3.02
62 63 2.654749 TTCGACGATGCTCATTCAGT 57.345 45.000 0.00 0.00 0.00 3.41
63 64 1.913317 TCGACGATGCTCATTCAGTG 58.087 50.000 0.00 0.00 0.00 3.66
64 65 1.472480 TCGACGATGCTCATTCAGTGA 59.528 47.619 0.00 0.00 35.05 3.41
65 66 2.094752 TCGACGATGCTCATTCAGTGAA 60.095 45.455 8.27 8.27 36.14 3.18
66 67 2.667969 CGACGATGCTCATTCAGTGAAA 59.332 45.455 10.14 0.00 36.14 2.69
67 68 3.241900 CGACGATGCTCATTCAGTGAAAG 60.242 47.826 10.14 5.62 36.14 2.62
68 69 3.928992 GACGATGCTCATTCAGTGAAAGA 59.071 43.478 10.14 10.18 36.14 2.52
69 70 4.318332 ACGATGCTCATTCAGTGAAAGAA 58.682 39.130 10.14 0.00 36.14 2.52
70 71 4.391216 ACGATGCTCATTCAGTGAAAGAAG 59.609 41.667 10.14 8.64 36.14 2.85
71 72 4.628766 CGATGCTCATTCAGTGAAAGAAGA 59.371 41.667 10.14 5.25 36.14 2.87
72 73 5.445673 CGATGCTCATTCAGTGAAAGAAGAC 60.446 44.000 10.14 4.36 36.14 3.01
73 74 3.742882 TGCTCATTCAGTGAAAGAAGACG 59.257 43.478 10.14 0.43 36.14 4.18
74 75 3.990469 GCTCATTCAGTGAAAGAAGACGA 59.010 43.478 10.14 0.00 36.14 4.20
75 76 4.143221 GCTCATTCAGTGAAAGAAGACGAC 60.143 45.833 10.14 0.00 36.14 4.34
76 77 5.201713 TCATTCAGTGAAAGAAGACGACT 57.798 39.130 10.14 0.00 32.78 4.18
77 78 6.327279 TCATTCAGTGAAAGAAGACGACTA 57.673 37.500 10.14 0.00 32.78 2.59
78 79 6.150318 TCATTCAGTGAAAGAAGACGACTAC 58.850 40.000 10.14 0.00 32.78 2.73
79 80 4.143194 TCAGTGAAAGAAGACGACTACG 57.857 45.455 0.00 0.00 45.75 3.51
80 81 3.058432 TCAGTGAAAGAAGACGACTACGG 60.058 47.826 0.00 0.00 44.46 4.02
81 82 2.228343 AGTGAAAGAAGACGACTACGGG 59.772 50.000 0.00 0.00 44.46 5.28
82 83 2.227388 GTGAAAGAAGACGACTACGGGA 59.773 50.000 0.00 0.00 44.46 5.14
83 84 2.486982 TGAAAGAAGACGACTACGGGAG 59.513 50.000 0.00 0.00 44.46 4.30
84 85 2.486472 AAGAAGACGACTACGGGAGA 57.514 50.000 0.00 0.00 44.46 3.71
85 86 1.736612 AGAAGACGACTACGGGAGAC 58.263 55.000 0.00 0.00 44.46 3.36
86 87 0.373024 GAAGACGACTACGGGAGACG 59.627 60.000 10.48 10.48 46.82 4.18
108 109 3.658757 CCGTGATGGGTTTGTCAAAAT 57.341 42.857 0.00 0.00 0.00 1.82
109 110 3.574614 CCGTGATGGGTTTGTCAAAATC 58.425 45.455 0.00 0.88 0.00 2.17
110 111 3.233578 CGTGATGGGTTTGTCAAAATCG 58.766 45.455 0.00 0.00 0.00 3.34
111 112 3.574614 GTGATGGGTTTGTCAAAATCGG 58.425 45.455 0.00 0.00 0.00 4.18
112 113 2.560542 TGATGGGTTTGTCAAAATCGGG 59.439 45.455 0.00 0.00 0.00 5.14
113 114 2.366640 TGGGTTTGTCAAAATCGGGA 57.633 45.000 0.00 0.00 0.00 5.14
114 115 2.883026 TGGGTTTGTCAAAATCGGGAT 58.117 42.857 0.00 0.00 0.00 3.85
115 116 4.035612 TGGGTTTGTCAAAATCGGGATA 57.964 40.909 0.00 0.00 0.00 2.59
116 117 4.408276 TGGGTTTGTCAAAATCGGGATAA 58.592 39.130 0.00 0.00 0.00 1.75
117 118 5.020132 TGGGTTTGTCAAAATCGGGATAAT 58.980 37.500 0.00 0.00 0.00 1.28
118 119 5.105554 TGGGTTTGTCAAAATCGGGATAATG 60.106 40.000 0.00 0.00 0.00 1.90
119 120 5.105513 GGGTTTGTCAAAATCGGGATAATGT 60.106 40.000 0.00 0.00 0.00 2.71
120 121 5.804979 GGTTTGTCAAAATCGGGATAATGTG 59.195 40.000 0.00 0.00 0.00 3.21
121 122 4.630894 TGTCAAAATCGGGATAATGTGC 57.369 40.909 0.00 0.00 0.00 4.57
122 123 3.380004 TGTCAAAATCGGGATAATGTGCC 59.620 43.478 0.00 0.00 34.40 5.01
123 124 3.380004 GTCAAAATCGGGATAATGTGCCA 59.620 43.478 0.00 0.00 38.45 4.92
124 125 4.019858 TCAAAATCGGGATAATGTGCCAA 58.980 39.130 0.00 0.00 38.45 4.52
125 126 4.111916 CAAAATCGGGATAATGTGCCAAC 58.888 43.478 0.00 0.00 38.45 3.77
126 127 3.297134 AATCGGGATAATGTGCCAACT 57.703 42.857 0.00 0.00 38.45 3.16
127 128 2.325583 TCGGGATAATGTGCCAACTC 57.674 50.000 0.00 0.00 38.45 3.01
128 129 0.937304 CGGGATAATGTGCCAACTCG 59.063 55.000 0.00 0.00 38.45 4.18
129 130 1.472552 CGGGATAATGTGCCAACTCGA 60.473 52.381 0.00 0.00 38.45 4.04
130 131 2.639065 GGGATAATGTGCCAACTCGAA 58.361 47.619 0.00 0.00 38.41 3.71
131 132 2.614057 GGGATAATGTGCCAACTCGAAG 59.386 50.000 0.00 0.00 38.41 3.79
132 133 2.614057 GGATAATGTGCCAACTCGAAGG 59.386 50.000 0.00 0.00 0.00 3.46
133 134 2.851263 TAATGTGCCAACTCGAAGGT 57.149 45.000 0.00 0.00 0.00 3.50
134 135 1.238439 AATGTGCCAACTCGAAGGTG 58.762 50.000 0.00 0.00 31.21 4.00
135 136 1.237285 ATGTGCCAACTCGAAGGTGC 61.237 55.000 0.00 0.00 29.64 5.01
136 137 1.598130 GTGCCAACTCGAAGGTGCT 60.598 57.895 0.00 0.00 29.64 4.40
137 138 1.301716 TGCCAACTCGAAGGTGCTC 60.302 57.895 0.00 0.00 29.64 4.26
138 139 1.301716 GCCAACTCGAAGGTGCTCA 60.302 57.895 0.00 0.00 29.64 4.26
139 140 0.674895 GCCAACTCGAAGGTGCTCAT 60.675 55.000 0.00 0.00 29.64 2.90
140 141 1.405526 GCCAACTCGAAGGTGCTCATA 60.406 52.381 0.00 0.00 29.64 2.15
141 142 2.544685 CCAACTCGAAGGTGCTCATAG 58.455 52.381 0.00 0.00 29.64 2.23
142 143 2.166459 CCAACTCGAAGGTGCTCATAGA 59.834 50.000 0.00 0.00 29.64 1.98
143 144 3.181471 CCAACTCGAAGGTGCTCATAGAT 60.181 47.826 0.00 0.00 29.64 1.98
144 145 4.038042 CCAACTCGAAGGTGCTCATAGATA 59.962 45.833 0.00 0.00 29.64 1.98
145 146 5.218885 CAACTCGAAGGTGCTCATAGATAG 58.781 45.833 0.00 0.00 0.00 2.08
146 147 4.720046 ACTCGAAGGTGCTCATAGATAGA 58.280 43.478 0.00 0.00 0.00 1.98
147 148 4.759693 ACTCGAAGGTGCTCATAGATAGAG 59.240 45.833 0.00 0.00 36.21 2.43
148 149 4.075682 TCGAAGGTGCTCATAGATAGAGG 58.924 47.826 0.00 0.00 33.72 3.69
149 150 3.823873 CGAAGGTGCTCATAGATAGAGGT 59.176 47.826 0.00 0.00 33.72 3.85
150 151 4.083003 CGAAGGTGCTCATAGATAGAGGTC 60.083 50.000 0.00 0.00 33.72 3.85
151 152 3.417101 AGGTGCTCATAGATAGAGGTCG 58.583 50.000 0.00 0.00 33.72 4.79
152 153 3.073209 AGGTGCTCATAGATAGAGGTCGA 59.927 47.826 0.00 0.00 33.72 4.20
153 154 3.438781 GGTGCTCATAGATAGAGGTCGAG 59.561 52.174 0.00 0.00 33.72 4.04
154 155 4.320023 GTGCTCATAGATAGAGGTCGAGA 58.680 47.826 0.00 0.00 33.72 4.04
155 156 4.941263 GTGCTCATAGATAGAGGTCGAGAT 59.059 45.833 0.00 0.00 33.72 2.75
156 157 5.064707 GTGCTCATAGATAGAGGTCGAGATC 59.935 48.000 0.00 0.00 33.72 2.75
157 158 4.270084 GCTCATAGATAGAGGTCGAGATCG 59.730 50.000 0.00 0.00 35.75 3.69
158 159 4.185394 TCATAGATAGAGGTCGAGATCGC 58.815 47.826 0.00 0.00 39.60 4.58
159 160 1.816074 AGATAGAGGTCGAGATCGCC 58.184 55.000 0.00 2.70 39.60 5.54
179 180 1.989864 CTGCGTGCGTTGAGTGTATAA 59.010 47.619 0.00 0.00 0.00 0.98
193 194 6.046593 TGAGTGTATAAAATGTCCGTGGATC 58.953 40.000 0.00 0.00 0.00 3.36
215 216 3.425525 CGCATAGGTTGATATGACACGAC 59.574 47.826 0.00 0.00 35.54 4.34
515 533 3.288092 GAGCCGTATTTCCCAATCCTTT 58.712 45.455 0.00 0.00 0.00 3.11
560 579 1.800229 TTTCCTCCCAAGCCTTCCCC 61.800 60.000 0.00 0.00 0.00 4.81
561 580 2.941025 CCTCCCAAGCCTTCCCCA 60.941 66.667 0.00 0.00 0.00 4.96
563 582 2.451493 TCCCAAGCCTTCCCCACA 60.451 61.111 0.00 0.00 0.00 4.17
564 583 2.036256 CCCAAGCCTTCCCCACAG 59.964 66.667 0.00 0.00 0.00 3.66
565 584 2.677875 CCAAGCCTTCCCCACAGC 60.678 66.667 0.00 0.00 0.00 4.40
616 637 2.260869 CCACAAGTCAACGGCCTGG 61.261 63.158 0.00 0.00 0.00 4.45
698 721 1.128188 ATACCCAGATCCGCTTCCCC 61.128 60.000 0.00 0.00 0.00 4.81
837 865 1.183030 AGGGGCGGTTAAAAAGTGGC 61.183 55.000 0.00 0.00 0.00 5.01
936 1191 1.330655 GCGATCCCTCCTCCTTCACA 61.331 60.000 0.00 0.00 0.00 3.58
975 1237 2.505118 GTCGGTGCTCAGACGCTC 60.505 66.667 3.37 0.00 0.00 5.03
979 1241 4.803426 GTGCTCAGACGCTCGGGG 62.803 72.222 0.00 0.00 0.00 5.73
1307 1576 3.087906 CCCCACCGGGTAAGGGAG 61.088 72.222 24.03 11.25 45.80 4.30
1472 1741 1.940883 TACGCGACGGCAATTCTCCT 61.941 55.000 15.93 0.00 39.92 3.69
1485 1754 1.566211 TTCTCCTCTCCTGCTCTTGG 58.434 55.000 0.00 0.00 0.00 3.61
1497 1766 3.144506 CTGCTCTTGGTTAGGCATATGG 58.855 50.000 4.56 0.00 32.17 2.74
1572 1857 1.750193 GATTCAGGCCGAAATCACCA 58.250 50.000 21.46 0.00 37.12 4.17
1594 1879 1.276622 GCCTCTTAGGTGACCTTCCA 58.723 55.000 10.53 0.00 37.80 3.53
1596 1881 2.239907 GCCTCTTAGGTGACCTTCCATT 59.760 50.000 10.53 0.00 37.80 3.16
1597 1882 3.878778 CCTCTTAGGTGACCTTCCATTG 58.121 50.000 10.53 0.00 34.61 2.82
1598 1883 3.370953 CCTCTTAGGTGACCTTCCATTGG 60.371 52.174 10.53 1.51 34.61 3.16
1599 1884 3.256704 TCTTAGGTGACCTTCCATTGGT 58.743 45.455 10.53 0.00 41.07 3.67
1600 1885 3.655777 TCTTAGGTGACCTTCCATTGGTT 59.344 43.478 10.53 0.00 38.03 3.67
1601 1886 2.586648 AGGTGACCTTCCATTGGTTC 57.413 50.000 0.00 0.00 38.03 3.62
1632 1917 6.583089 GTGAATCATCATGGGCAAGGATGC 62.583 50.000 11.62 0.00 44.17 3.91
1708 1994 1.331756 CCTGTTTGCTGATCGTATGGC 59.668 52.381 0.00 0.00 0.00 4.40
1736 2022 9.710900 GTCTGAATTTTGGTGATTTAGGATTTT 57.289 29.630 0.00 0.00 0.00 1.82
1818 2104 5.759059 TGTTCATTTCTCAATAGGCCATCT 58.241 37.500 5.01 0.00 0.00 2.90
1871 2157 2.159085 GGTTCACTCAGGATTACTCCCG 60.159 54.545 0.00 0.00 43.21 5.14
1877 2163 2.894126 CTCAGGATTACTCCCGTATGCT 59.106 50.000 0.00 0.00 43.21 3.79
1883 2169 4.691216 GGATTACTCCCGTATGCTCAATTC 59.309 45.833 0.00 0.00 35.28 2.17
1896 2182 5.366829 TGCTCAATTCTGTGAAATCTGTG 57.633 39.130 0.00 0.00 0.00 3.66
1970 2258 3.099905 TCCACCAGTAGAACTCATCCTG 58.900 50.000 0.00 0.00 0.00 3.86
2250 2539 3.100671 AGTCTCTATTCCACCACACCTC 58.899 50.000 0.00 0.00 0.00 3.85
2520 2809 2.711009 ACTCATCAAGTGGACAAAGGGA 59.289 45.455 0.00 0.00 36.65 4.20
2561 2850 6.075257 GCGGTAAAATTCAAAACACTACACAC 60.075 38.462 0.00 0.00 0.00 3.82
2691 2980 5.351465 CGTATGCCAATCAGAACTTAAGTGT 59.649 40.000 9.34 0.00 0.00 3.55
2717 3006 8.161699 TGAAGTTATAGTGGTTTTGTTCTTCC 57.838 34.615 0.00 0.00 0.00 3.46
2782 3071 2.093921 TGGTATCGAAGCCAATTGTCGA 60.094 45.455 18.35 18.35 46.74 4.20
2797 3086 6.761242 CCAATTGTCGATCTTAAGTGGTATCA 59.239 38.462 4.43 0.00 35.48 2.15
3175 3479 2.624838 AGGCTGAGTGTTGATGTTTTGG 59.375 45.455 0.00 0.00 0.00 3.28
3208 3512 4.120331 GTCGGCACATTGGCTGGC 62.120 66.667 0.00 0.00 41.25 4.85
3789 4094 8.974060 TTAGGTAATACTTGATCCATTGTTCC 57.026 34.615 0.00 0.00 0.00 3.62
3901 4206 2.514458 AGATAAGTGCCTTGGTTGGG 57.486 50.000 0.00 0.00 0.00 4.12
3902 4207 1.005924 AGATAAGTGCCTTGGTTGGGG 59.994 52.381 0.00 0.00 0.00 4.96
3903 4208 0.783850 ATAAGTGCCTTGGTTGGGGT 59.216 50.000 0.00 0.00 0.00 4.95
3904 4209 0.111639 TAAGTGCCTTGGTTGGGGTC 59.888 55.000 0.00 0.00 0.00 4.46
3905 4210 1.943730 AAGTGCCTTGGTTGGGGTCA 61.944 55.000 0.00 0.00 0.00 4.02
3906 4211 1.228862 GTGCCTTGGTTGGGGTCAT 60.229 57.895 0.00 0.00 0.00 3.06
3907 4212 0.831711 GTGCCTTGGTTGGGGTCATT 60.832 55.000 0.00 0.00 0.00 2.57
3908 4213 0.105246 TGCCTTGGTTGGGGTCATTT 60.105 50.000 0.00 0.00 0.00 2.32
3909 4214 1.055849 GCCTTGGTTGGGGTCATTTT 58.944 50.000 0.00 0.00 0.00 1.82
3910 4215 1.001974 GCCTTGGTTGGGGTCATTTTC 59.998 52.381 0.00 0.00 0.00 2.29
3911 4216 1.623311 CCTTGGTTGGGGTCATTTTCC 59.377 52.381 0.00 0.00 0.00 3.13
3912 4217 2.324541 CTTGGTTGGGGTCATTTTCCA 58.675 47.619 0.00 0.00 0.00 3.53
3913 4218 2.711895 TGGTTGGGGTCATTTTCCAT 57.288 45.000 0.00 0.00 0.00 3.41
3914 4219 2.255406 TGGTTGGGGTCATTTTCCATG 58.745 47.619 0.00 0.00 0.00 3.66
3915 4220 1.066215 GGTTGGGGTCATTTTCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
3916 4221 1.901833 GTTGGGGTCATTTTCCATGCT 59.098 47.619 0.00 0.00 0.00 3.79
3917 4222 3.096092 GTTGGGGTCATTTTCCATGCTA 58.904 45.455 0.00 0.00 0.00 3.49
3918 4223 3.464720 TGGGGTCATTTTCCATGCTAA 57.535 42.857 0.00 0.00 0.00 3.09
3919 4224 3.992999 TGGGGTCATTTTCCATGCTAAT 58.007 40.909 0.00 0.00 0.00 1.73
3920 4225 5.136068 TGGGGTCATTTTCCATGCTAATA 57.864 39.130 0.00 0.00 0.00 0.98
3921 4226 5.714863 TGGGGTCATTTTCCATGCTAATAT 58.285 37.500 0.00 0.00 0.00 1.28
3922 4227 6.142498 TGGGGTCATTTTCCATGCTAATATT 58.858 36.000 0.00 0.00 0.00 1.28
3923 4228 6.041865 TGGGGTCATTTTCCATGCTAATATTG 59.958 38.462 0.00 0.00 0.00 1.90
3924 4229 6.267471 GGGGTCATTTTCCATGCTAATATTGA 59.733 38.462 0.00 0.00 0.00 2.57
3925 4230 7.373493 GGGTCATTTTCCATGCTAATATTGAG 58.627 38.462 0.00 0.00 0.00 3.02
3926 4231 6.865205 GGTCATTTTCCATGCTAATATTGAGC 59.135 38.462 0.00 4.36 40.53 4.26
3927 4232 7.255730 GGTCATTTTCCATGCTAATATTGAGCT 60.256 37.037 14.13 0.00 40.76 4.09
3928 4233 7.594015 GTCATTTTCCATGCTAATATTGAGCTG 59.406 37.037 14.13 10.78 40.76 4.24
3929 4234 7.286087 TCATTTTCCATGCTAATATTGAGCTGT 59.714 33.333 14.13 4.98 40.76 4.40
3930 4235 7.408756 TTTTCCATGCTAATATTGAGCTGTT 57.591 32.000 14.13 0.00 40.76 3.16
3931 4236 6.381481 TTCCATGCTAATATTGAGCTGTTG 57.619 37.500 14.13 10.39 40.76 3.33
3932 4237 5.683681 TCCATGCTAATATTGAGCTGTTGA 58.316 37.500 14.13 6.66 40.76 3.18
3933 4238 5.528690 TCCATGCTAATATTGAGCTGTTGAC 59.471 40.000 14.13 0.00 40.76 3.18
3934 4239 5.297527 CCATGCTAATATTGAGCTGTTGACA 59.702 40.000 14.13 0.00 40.76 3.58
3935 4240 6.183360 CCATGCTAATATTGAGCTGTTGACAA 60.183 38.462 14.13 0.00 40.76 3.18
3936 4241 7.423199 CATGCTAATATTGAGCTGTTGACAAT 58.577 34.615 14.13 0.00 40.76 2.71
3937 4242 8.562052 CATGCTAATATTGAGCTGTTGACAATA 58.438 33.333 14.13 7.12 40.76 1.90
3938 4243 8.504812 TGCTAATATTGAGCTGTTGACAATAA 57.495 30.769 8.39 0.00 40.76 1.40
3939 4244 9.123902 TGCTAATATTGAGCTGTTGACAATAAT 57.876 29.630 8.39 4.16 40.76 1.28
3966 4271 0.181114 TGCACAAGGAAGCAGTGTCT 59.819 50.000 0.00 0.00 35.51 3.41
4158 4464 4.723309 ACTTTTCTTCTGGTCAATGCTCT 58.277 39.130 0.00 0.00 0.00 4.09
4182 4488 2.535012 TGTCACGGCTGTGTTCAATA 57.465 45.000 24.61 1.70 46.49 1.90
4244 4565 6.049149 GCCTGTGCAATTGTCTAGTTAGATA 58.951 40.000 7.40 0.00 37.47 1.98
4268 4590 5.365619 AGAGTTTGTTTCGTCACACCTTAT 58.634 37.500 0.00 0.00 0.00 1.73
4269 4591 6.518493 AGAGTTTGTTTCGTCACACCTTATA 58.482 36.000 0.00 0.00 0.00 0.98
4284 4639 9.877178 TCACACCTTATAATGTTTGTTTTGTTT 57.123 25.926 6.85 0.00 0.00 2.83
4402 4765 7.899648 ATAGATTATATAGGTCACTTCCCCG 57.100 40.000 0.00 0.00 0.00 5.73
4403 4766 4.466726 AGATTATATAGGTCACTTCCCCGC 59.533 45.833 1.54 0.00 0.00 6.13
4404 4767 2.097110 ATATAGGTCACTTCCCCGCA 57.903 50.000 0.00 0.00 0.00 5.69
4405 4768 1.868713 TATAGGTCACTTCCCCGCAA 58.131 50.000 0.00 0.00 0.00 4.85
4406 4769 0.988832 ATAGGTCACTTCCCCGCAAA 59.011 50.000 0.00 0.00 0.00 3.68
4407 4770 0.766131 TAGGTCACTTCCCCGCAAAA 59.234 50.000 0.00 0.00 0.00 2.44
4408 4771 0.106419 AGGTCACTTCCCCGCAAAAA 60.106 50.000 0.00 0.00 0.00 1.94
4455 4818 2.158986 AGATGGATGCACTGAGTAGCAC 60.159 50.000 10.91 6.50 44.49 4.40
4502 4866 2.824936 TCCATTGCCATTAACACCACTG 59.175 45.455 0.00 0.00 0.00 3.66
4692 5063 4.844655 AGCTAAAGGATATCGTTGGGGTAT 59.155 41.667 11.23 0.00 0.00 2.73
4769 5140 3.691118 GCTGATCTCATGTTTAGGTTGCA 59.309 43.478 0.00 0.00 0.00 4.08
4897 5268 2.672996 CCGGGACAAGGTGCCAAG 60.673 66.667 7.68 0.00 44.45 3.61
4898 5269 2.672996 CGGGACAAGGTGCCAAGG 60.673 66.667 7.68 0.00 44.45 3.61
4952 5323 0.616395 TGGACGGTGGGCTCTATGAA 60.616 55.000 0.00 0.00 0.00 2.57
4955 5326 1.139058 GACGGTGGGCTCTATGAACAT 59.861 52.381 0.00 0.00 0.00 2.71
5160 5531 3.559171 GGATTGAACCCAGAGTGTAGCAA 60.559 47.826 0.00 0.00 0.00 3.91
5161 5532 3.788227 TTGAACCCAGAGTGTAGCAAT 57.212 42.857 0.00 0.00 0.00 3.56
5202 5575 5.164606 TCTTTTTCTTTTCCCTTCGAACG 57.835 39.130 0.00 0.00 0.00 3.95
5405 5778 2.562738 CTGCCGATTCTTTTTCCCCTTT 59.437 45.455 0.00 0.00 0.00 3.11
5630 6013 0.607217 CATCTCAAGGCTGGCACACA 60.607 55.000 3.38 0.00 0.00 3.72
5641 6024 3.773860 CTGGCACACAGTGTACAAAAA 57.226 42.857 5.69 0.00 42.42 1.94
5653 6036 5.920273 CAGTGTACAAAAATCCACCATTGTC 59.080 40.000 0.00 0.00 37.25 3.18
5655 6038 6.267471 AGTGTACAAAAATCCACCATTGTCAT 59.733 34.615 0.00 0.00 37.25 3.06
5656 6039 6.586082 GTGTACAAAAATCCACCATTGTCATC 59.414 38.462 0.00 0.00 37.25 2.92
5657 6040 6.493115 TGTACAAAAATCCACCATTGTCATCT 59.507 34.615 0.00 0.00 37.25 2.90
5658 6041 5.786311 ACAAAAATCCACCATTGTCATCTG 58.214 37.500 0.00 0.00 30.58 2.90
5659 6042 4.460948 AAAATCCACCATTGTCATCTGC 57.539 40.909 0.00 0.00 0.00 4.26
5671 6054 1.408340 GTCATCTGCTCTGCTCTGCTA 59.592 52.381 0.00 0.00 0.00 3.49
5679 6062 2.865551 GCTCTGCTCTGCTATGAAACTC 59.134 50.000 0.00 0.00 0.00 3.01
5683 6066 2.302733 TGCTCTGCTATGAAACTCCACA 59.697 45.455 0.00 0.00 0.00 4.17
5689 6072 4.318332 TGCTATGAAACTCCACAGTCTTG 58.682 43.478 0.00 0.00 29.93 3.02
5693 6076 3.995199 TGAAACTCCACAGTCTTGCTAG 58.005 45.455 0.00 0.00 29.93 3.42
5697 6080 4.522722 ACTCCACAGTCTTGCTAGTTAC 57.477 45.455 0.00 0.00 0.00 2.50
5698 6081 3.895656 ACTCCACAGTCTTGCTAGTTACA 59.104 43.478 0.00 0.00 0.00 2.41
5699 6082 4.021894 ACTCCACAGTCTTGCTAGTTACAG 60.022 45.833 0.00 0.00 0.00 2.74
5777 6179 4.421479 CAGCGGCGTCGGAGAGTT 62.421 66.667 13.05 0.00 36.95 3.01
5856 6258 2.202453 GGCCGTCTTCTCGTCGAC 60.202 66.667 5.18 5.18 0.00 4.20
5971 6373 0.318699 CGAGCTTGAACACGACCTCA 60.319 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.078709 ACGCGGTCATCAATGTCAAG 58.921 50.000 12.47 0.00 0.00 3.02
1 2 1.518325 AACGCGGTCATCAATGTCAA 58.482 45.000 12.47 0.00 0.00 3.18
2 3 1.518325 AAACGCGGTCATCAATGTCA 58.482 45.000 12.47 0.00 0.00 3.58
3 4 2.241722 CAAAACGCGGTCATCAATGTC 58.758 47.619 12.47 0.00 0.00 3.06
5 6 0.984109 GCAAAACGCGGTCATCAATG 59.016 50.000 12.47 0.00 0.00 2.82
7 8 4.933483 GCAAAACGCGGTCATCAA 57.067 50.000 12.47 0.00 0.00 2.57
16 17 3.303229 CCGAAATAAATCCAGCAAAACGC 59.697 43.478 0.00 0.00 42.91 4.84
17 18 4.557301 GTCCGAAATAAATCCAGCAAAACG 59.443 41.667 0.00 0.00 0.00 3.60
18 19 5.709966 AGTCCGAAATAAATCCAGCAAAAC 58.290 37.500 0.00 0.00 0.00 2.43
19 20 5.975693 AGTCCGAAATAAATCCAGCAAAA 57.024 34.783 0.00 0.00 0.00 2.44
21 22 5.975693 AAAGTCCGAAATAAATCCAGCAA 57.024 34.783 0.00 0.00 0.00 3.91
22 23 5.391523 CGAAAAGTCCGAAATAAATCCAGCA 60.392 40.000 0.00 0.00 0.00 4.41
24 25 6.248631 GTCGAAAAGTCCGAAATAAATCCAG 58.751 40.000 0.00 0.00 37.81 3.86
25 26 5.163933 CGTCGAAAAGTCCGAAATAAATCCA 60.164 40.000 0.00 0.00 37.81 3.41
26 27 5.062558 TCGTCGAAAAGTCCGAAATAAATCC 59.937 40.000 0.00 0.00 37.81 3.01
27 28 6.086319 TCGTCGAAAAGTCCGAAATAAATC 57.914 37.500 0.00 0.00 37.81 2.17
28 29 6.475207 CATCGTCGAAAAGTCCGAAATAAAT 58.525 36.000 0.00 0.00 37.81 1.40
29 30 5.669357 GCATCGTCGAAAAGTCCGAAATAAA 60.669 40.000 0.00 0.00 37.81 1.40
30 31 4.201647 GCATCGTCGAAAAGTCCGAAATAA 60.202 41.667 0.00 0.00 37.81 1.40
31 32 3.305094 GCATCGTCGAAAAGTCCGAAATA 59.695 43.478 0.00 0.00 37.81 1.40
32 33 2.093783 GCATCGTCGAAAAGTCCGAAAT 59.906 45.455 0.00 0.00 37.81 2.17
33 34 1.458064 GCATCGTCGAAAAGTCCGAAA 59.542 47.619 0.00 0.00 37.81 3.46
34 35 1.065358 GCATCGTCGAAAAGTCCGAA 58.935 50.000 0.00 0.00 37.81 4.30
35 36 0.242825 AGCATCGTCGAAAAGTCCGA 59.757 50.000 0.00 0.00 0.00 4.55
36 37 0.640768 GAGCATCGTCGAAAAGTCCG 59.359 55.000 0.00 0.00 0.00 4.79
37 38 1.710013 TGAGCATCGTCGAAAAGTCC 58.290 50.000 0.00 0.00 38.61 3.85
38 39 3.367932 TGAATGAGCATCGTCGAAAAGTC 59.632 43.478 0.00 0.00 38.61 3.01
39 40 3.325870 TGAATGAGCATCGTCGAAAAGT 58.674 40.909 0.00 0.00 38.61 2.66
40 41 3.369147 ACTGAATGAGCATCGTCGAAAAG 59.631 43.478 0.00 0.00 38.61 2.27
41 42 3.123453 CACTGAATGAGCATCGTCGAAAA 59.877 43.478 0.00 0.00 38.61 2.29
42 43 2.667969 CACTGAATGAGCATCGTCGAAA 59.332 45.455 0.00 0.00 38.61 3.46
43 44 2.094752 TCACTGAATGAGCATCGTCGAA 60.095 45.455 0.00 0.00 38.61 3.71
44 45 1.472480 TCACTGAATGAGCATCGTCGA 59.528 47.619 0.00 0.00 38.61 4.20
45 46 1.913317 TCACTGAATGAGCATCGTCG 58.087 50.000 0.00 0.00 38.61 5.12
46 47 3.928992 TCTTTCACTGAATGAGCATCGTC 59.071 43.478 3.75 0.00 38.99 4.20
47 48 3.930336 TCTTTCACTGAATGAGCATCGT 58.070 40.909 3.75 0.00 38.99 3.73
48 49 4.628766 TCTTCTTTCACTGAATGAGCATCG 59.371 41.667 7.27 0.00 38.99 3.84
49 50 5.445673 CGTCTTCTTTCACTGAATGAGCATC 60.446 44.000 7.27 1.75 38.99 3.91
50 51 4.391216 CGTCTTCTTTCACTGAATGAGCAT 59.609 41.667 7.27 0.00 38.99 3.79
51 52 3.742882 CGTCTTCTTTCACTGAATGAGCA 59.257 43.478 7.27 0.00 38.99 4.26
52 53 3.990469 TCGTCTTCTTTCACTGAATGAGC 59.010 43.478 7.27 3.26 38.99 4.26
53 54 5.226396 AGTCGTCTTCTTTCACTGAATGAG 58.774 41.667 7.27 0.00 38.99 2.90
54 55 5.201713 AGTCGTCTTCTTTCACTGAATGA 57.798 39.130 3.75 3.75 34.65 2.57
55 56 5.059832 CGTAGTCGTCTTCTTTCACTGAATG 59.940 44.000 0.00 0.00 0.00 2.67
56 57 5.154932 CGTAGTCGTCTTCTTTCACTGAAT 58.845 41.667 0.00 0.00 0.00 2.57
57 58 4.534168 CGTAGTCGTCTTCTTTCACTGAA 58.466 43.478 0.00 0.00 0.00 3.02
58 59 3.058432 CCGTAGTCGTCTTCTTTCACTGA 60.058 47.826 0.00 0.00 35.01 3.41
59 60 3.235195 CCGTAGTCGTCTTCTTTCACTG 58.765 50.000 0.00 0.00 35.01 3.66
60 61 2.228343 CCCGTAGTCGTCTTCTTTCACT 59.772 50.000 0.00 0.00 35.01 3.41
61 62 2.227388 TCCCGTAGTCGTCTTCTTTCAC 59.773 50.000 0.00 0.00 35.01 3.18
62 63 2.486982 CTCCCGTAGTCGTCTTCTTTCA 59.513 50.000 0.00 0.00 35.01 2.69
63 64 2.746362 TCTCCCGTAGTCGTCTTCTTTC 59.254 50.000 0.00 0.00 35.01 2.62
64 65 2.487372 GTCTCCCGTAGTCGTCTTCTTT 59.513 50.000 0.00 0.00 35.01 2.52
65 66 2.083002 GTCTCCCGTAGTCGTCTTCTT 58.917 52.381 0.00 0.00 35.01 2.52
66 67 1.736612 GTCTCCCGTAGTCGTCTTCT 58.263 55.000 0.00 0.00 35.01 2.85
67 68 0.373024 CGTCTCCCGTAGTCGTCTTC 59.627 60.000 0.00 0.00 32.92 2.87
68 69 1.642952 GCGTCTCCCGTAGTCGTCTT 61.643 60.000 0.00 0.00 38.73 3.01
69 70 2.105466 GCGTCTCCCGTAGTCGTCT 61.105 63.158 4.26 0.00 38.73 4.18
70 71 2.402787 GCGTCTCCCGTAGTCGTC 59.597 66.667 4.26 0.00 38.73 4.20
71 72 3.130160 GGCGTCTCCCGTAGTCGT 61.130 66.667 4.26 0.00 38.73 4.34
88 89 3.574614 GATTTTGACAAACCCATCACGG 58.425 45.455 0.00 0.00 0.00 4.94
89 90 3.233578 CGATTTTGACAAACCCATCACG 58.766 45.455 0.00 0.00 0.00 4.35
90 91 3.574614 CCGATTTTGACAAACCCATCAC 58.425 45.455 0.00 0.00 0.00 3.06
91 92 2.560542 CCCGATTTTGACAAACCCATCA 59.439 45.455 0.00 0.00 0.00 3.07
92 93 2.823154 TCCCGATTTTGACAAACCCATC 59.177 45.455 0.00 0.85 0.00 3.51
93 94 2.883026 TCCCGATTTTGACAAACCCAT 58.117 42.857 0.00 0.00 0.00 4.00
94 95 2.366640 TCCCGATTTTGACAAACCCA 57.633 45.000 0.00 0.00 0.00 4.51
95 96 5.105513 ACATTATCCCGATTTTGACAAACCC 60.106 40.000 0.00 0.00 0.00 4.11
96 97 5.804979 CACATTATCCCGATTTTGACAAACC 59.195 40.000 0.00 0.00 0.00 3.27
97 98 5.288472 GCACATTATCCCGATTTTGACAAAC 59.712 40.000 0.00 0.00 0.00 2.93
98 99 5.406649 GCACATTATCCCGATTTTGACAAA 58.593 37.500 0.00 0.00 0.00 2.83
99 100 4.142271 GGCACATTATCCCGATTTTGACAA 60.142 41.667 0.00 0.00 0.00 3.18
100 101 3.380004 GGCACATTATCCCGATTTTGACA 59.620 43.478 0.00 0.00 0.00 3.58
101 102 3.380004 TGGCACATTATCCCGATTTTGAC 59.620 43.478 0.00 0.00 0.00 3.18
102 103 3.625853 TGGCACATTATCCCGATTTTGA 58.374 40.909 0.00 0.00 0.00 2.69
103 104 4.111916 GTTGGCACATTATCCCGATTTTG 58.888 43.478 0.00 0.00 39.30 2.44
104 105 4.023291 AGTTGGCACATTATCCCGATTTT 58.977 39.130 0.00 0.00 39.30 1.82
105 106 3.631250 AGTTGGCACATTATCCCGATTT 58.369 40.909 0.00 0.00 39.30 2.17
106 107 3.214328 GAGTTGGCACATTATCCCGATT 58.786 45.455 0.00 0.00 39.30 3.34
107 108 2.806745 CGAGTTGGCACATTATCCCGAT 60.807 50.000 0.00 0.00 39.30 4.18
108 109 1.472552 CGAGTTGGCACATTATCCCGA 60.473 52.381 0.00 0.00 39.30 5.14
109 110 0.937304 CGAGTTGGCACATTATCCCG 59.063 55.000 0.00 0.00 39.30 5.14
110 111 2.325583 TCGAGTTGGCACATTATCCC 57.674 50.000 0.00 0.00 39.30 3.85
111 112 2.614057 CCTTCGAGTTGGCACATTATCC 59.386 50.000 0.00 0.00 39.30 2.59
112 113 3.063997 CACCTTCGAGTTGGCACATTATC 59.936 47.826 0.00 0.00 39.30 1.75
113 114 3.009723 CACCTTCGAGTTGGCACATTAT 58.990 45.455 0.00 0.00 39.30 1.28
114 115 2.422597 CACCTTCGAGTTGGCACATTA 58.577 47.619 0.00 0.00 39.30 1.90
115 116 1.238439 CACCTTCGAGTTGGCACATT 58.762 50.000 0.00 0.00 39.30 2.71
116 117 1.237285 GCACCTTCGAGTTGGCACAT 61.237 55.000 0.00 0.00 39.30 3.21
117 118 1.891919 GCACCTTCGAGTTGGCACA 60.892 57.895 0.00 0.00 0.00 4.57
118 119 1.569479 GAGCACCTTCGAGTTGGCAC 61.569 60.000 0.00 0.00 0.00 5.01
119 120 1.301716 GAGCACCTTCGAGTTGGCA 60.302 57.895 4.45 0.00 0.00 4.92
120 121 0.674895 ATGAGCACCTTCGAGTTGGC 60.675 55.000 1.80 0.00 0.00 4.52
121 122 2.166459 TCTATGAGCACCTTCGAGTTGG 59.834 50.000 0.00 0.00 0.00 3.77
122 123 3.510388 TCTATGAGCACCTTCGAGTTG 57.490 47.619 0.00 0.00 0.00 3.16
123 124 5.133941 TCTATCTATGAGCACCTTCGAGTT 58.866 41.667 0.00 0.00 0.00 3.01
124 125 4.720046 TCTATCTATGAGCACCTTCGAGT 58.280 43.478 0.00 0.00 0.00 4.18
125 126 4.155826 CCTCTATCTATGAGCACCTTCGAG 59.844 50.000 0.00 0.00 0.00 4.04
126 127 4.075682 CCTCTATCTATGAGCACCTTCGA 58.924 47.826 0.00 0.00 0.00 3.71
127 128 3.823873 ACCTCTATCTATGAGCACCTTCG 59.176 47.826 0.00 0.00 0.00 3.79
128 129 4.083003 CGACCTCTATCTATGAGCACCTTC 60.083 50.000 0.00 0.00 0.00 3.46
129 130 3.823873 CGACCTCTATCTATGAGCACCTT 59.176 47.826 0.00 0.00 0.00 3.50
130 131 3.073209 TCGACCTCTATCTATGAGCACCT 59.927 47.826 0.00 0.00 0.00 4.00
131 132 3.413327 TCGACCTCTATCTATGAGCACC 58.587 50.000 0.00 0.00 0.00 5.01
132 133 4.320023 TCTCGACCTCTATCTATGAGCAC 58.680 47.826 0.00 0.00 0.00 4.40
133 134 4.625607 TCTCGACCTCTATCTATGAGCA 57.374 45.455 0.00 0.00 0.00 4.26
134 135 4.270084 CGATCTCGACCTCTATCTATGAGC 59.730 50.000 0.00 0.00 43.02 4.26
135 136 4.270084 GCGATCTCGACCTCTATCTATGAG 59.730 50.000 3.33 0.00 43.02 2.90
136 137 4.185394 GCGATCTCGACCTCTATCTATGA 58.815 47.826 3.33 0.00 43.02 2.15
137 138 3.311322 GGCGATCTCGACCTCTATCTATG 59.689 52.174 3.33 0.00 42.67 2.23
138 139 3.537580 GGCGATCTCGACCTCTATCTAT 58.462 50.000 3.33 0.00 42.67 1.98
139 140 2.975266 GGCGATCTCGACCTCTATCTA 58.025 52.381 3.33 0.00 42.67 1.98
140 141 1.816074 GGCGATCTCGACCTCTATCT 58.184 55.000 3.33 0.00 42.67 1.98
149 150 4.854784 GCACGCAGGCGATCTCGA 62.855 66.667 21.62 0.00 43.02 4.04
157 158 4.374702 CACTCAACGCACGCAGGC 62.375 66.667 0.00 0.00 0.00 4.85
158 159 1.014044 ATACACTCAACGCACGCAGG 61.014 55.000 0.00 0.00 0.00 4.85
159 160 1.624487 TATACACTCAACGCACGCAG 58.376 50.000 0.00 0.00 0.00 5.18
179 180 2.483876 CTATGCGATCCACGGACATTT 58.516 47.619 0.00 0.00 46.19 2.32
193 194 3.425525 GTCGTGTCATATCAACCTATGCG 59.574 47.826 0.00 0.00 0.00 4.73
226 227 3.621520 ACGCGAGTTGAACGGAAC 58.378 55.556 15.93 0.00 46.40 3.62
262 276 2.431942 CGTACTGCCGGCGACTTT 60.432 61.111 23.90 6.11 0.00 2.66
375 389 3.213402 CAACCGCCACCAACCGTT 61.213 61.111 0.00 0.00 0.00 4.44
515 533 4.098044 CAGATGCGTAGAGAGAGGGTAAAA 59.902 45.833 0.00 0.00 0.00 1.52
560 579 2.730094 GGTGCTGTTTGGGCTGTG 59.270 61.111 0.00 0.00 0.00 3.66
561 580 2.521708 GGGTGCTGTTTGGGCTGT 60.522 61.111 0.00 0.00 0.00 4.40
563 582 2.521708 GTGGGTGCTGTTTGGGCT 60.522 61.111 0.00 0.00 0.00 5.19
564 583 3.615709 GGTGGGTGCTGTTTGGGC 61.616 66.667 0.00 0.00 0.00 5.36
565 584 3.294493 CGGTGGGTGCTGTTTGGG 61.294 66.667 0.00 0.00 0.00 4.12
595 616 4.025401 GCCGTTGACTTGTGGCGG 62.025 66.667 0.00 0.00 44.60 6.13
732 755 3.255379 GCCGCGATCCGTTCTCAC 61.255 66.667 8.23 0.00 34.38 3.51
733 756 4.508128 GGCCGCGATCCGTTCTCA 62.508 66.667 8.23 0.00 34.38 3.27
814 840 0.524414 CTTTTTAACCGCCCCTTCCG 59.476 55.000 0.00 0.00 0.00 4.30
815 841 1.271379 CACTTTTTAACCGCCCCTTCC 59.729 52.381 0.00 0.00 0.00 3.46
909 1164 1.153349 GGAGGGATCGCTGTGGTTC 60.153 63.158 18.19 1.35 0.00 3.62
910 1165 1.613630 AGGAGGGATCGCTGTGGTT 60.614 57.895 18.19 0.00 0.00 3.67
911 1166 2.039624 AGGAGGGATCGCTGTGGT 59.960 61.111 18.19 0.00 0.00 4.16
912 1167 2.801631 GGAGGAGGGATCGCTGTGG 61.802 68.421 18.19 0.00 0.00 4.17
913 1168 1.333636 AAGGAGGAGGGATCGCTGTG 61.334 60.000 18.19 0.00 0.00 3.66
914 1169 1.002274 AAGGAGGAGGGATCGCTGT 59.998 57.895 18.19 3.86 0.00 4.40
936 1191 4.888325 CTCTGGATCCGGGGGCCT 62.888 72.222 20.82 0.00 0.00 5.19
983 1245 3.506059 ATCTTCGCGCCTGGATCCG 62.506 63.158 7.39 1.76 0.00 4.18
984 1246 1.958205 CATCTTCGCGCCTGGATCC 60.958 63.158 4.20 4.20 0.00 3.36
985 1247 1.958205 CCATCTTCGCGCCTGGATC 60.958 63.158 0.00 0.00 0.00 3.36
986 1248 2.109799 CCATCTTCGCGCCTGGAT 59.890 61.111 0.00 0.00 0.00 3.41
1247 1516 0.747283 CATCTTGAGCTGGGAGTGGC 60.747 60.000 0.00 0.00 0.00 5.01
1463 1732 3.533547 CAAGAGCAGGAGAGGAGAATTG 58.466 50.000 0.00 0.00 0.00 2.32
1472 1741 0.905357 GCCTAACCAAGAGCAGGAGA 59.095 55.000 0.00 0.00 0.00 3.71
1485 1754 1.237285 CGGCCAGCCATATGCCTAAC 61.237 60.000 9.78 0.00 43.12 2.34
1497 1766 1.743995 ATTTCACCGTACGGCCAGC 60.744 57.895 33.62 0.00 39.32 4.85
1572 1857 1.757699 GAAGGTCACCTAAGAGGCGAT 59.242 52.381 0.00 0.00 39.63 4.58
1591 1876 0.682852 ACCGAGAACGAACCAATGGA 59.317 50.000 6.16 0.00 42.66 3.41
1593 1878 1.790755 TCACCGAGAACGAACCAATG 58.209 50.000 0.00 0.00 42.66 2.82
1594 1879 2.536761 TTCACCGAGAACGAACCAAT 57.463 45.000 0.00 0.00 42.66 3.16
1596 1881 1.341852 TGATTCACCGAGAACGAACCA 59.658 47.619 0.00 0.00 39.49 3.67
1597 1882 2.074547 TGATTCACCGAGAACGAACC 57.925 50.000 0.00 0.00 39.49 3.62
1598 1883 3.250744 TGATGATTCACCGAGAACGAAC 58.749 45.455 0.00 0.00 39.49 3.95
1599 1884 3.586100 TGATGATTCACCGAGAACGAA 57.414 42.857 0.00 0.00 39.49 3.85
1600 1885 3.447742 CATGATGATTCACCGAGAACGA 58.552 45.455 0.00 0.00 39.49 3.85
1601 1886 2.541346 CCATGATGATTCACCGAGAACG 59.459 50.000 0.00 0.00 39.49 3.95
1708 1994 5.414454 TCCTAAATCACCAAAATTCAGACGG 59.586 40.000 0.00 0.00 0.00 4.79
1747 2033 1.341187 TGGTGGCATGCTGATTGATCA 60.341 47.619 18.92 0.77 35.16 2.92
1818 2104 5.221561 CCATAATCGGTTAGTACATCCCACA 60.222 44.000 0.00 0.00 0.00 4.17
1871 2157 6.965500 CACAGATTTCACAGAATTGAGCATAC 59.035 38.462 0.00 0.00 0.00 2.39
1877 2163 5.065235 TCTGCACAGATTTCACAGAATTGA 58.935 37.500 0.00 0.00 34.59 2.57
1883 2169 4.514441 AGAACTTCTGCACAGATTTCACAG 59.486 41.667 17.95 8.49 37.29 3.66
1896 2182 5.886960 ACCAATCACATAAGAACTTCTGC 57.113 39.130 0.00 0.00 0.00 4.26
1970 2258 8.438676 AAGCACATAACAGATTATACTTGGAC 57.561 34.615 0.00 0.00 29.44 4.02
2091 2380 6.183360 TGCAGAAATAGCACCCAAATGATTAG 60.183 38.462 0.00 0.00 37.02 1.73
2250 2539 1.271379 ACCAAGGAAGTTCCGACCATG 60.271 52.381 16.31 10.95 42.75 3.66
2520 2809 0.455972 CCGCGCCGTTGATTGAAAAT 60.456 50.000 0.00 0.00 0.00 1.82
2561 2850 3.119708 GCTAGGAACTGCTCAACAAATGG 60.120 47.826 0.00 0.00 41.52 3.16
2621 2910 3.969466 TGCCAAGGGAATCAATGGATA 57.031 42.857 2.95 0.00 34.82 2.59
2691 2980 8.626526 GGAAGAACAAAACCACTATAACTTCAA 58.373 33.333 0.00 0.00 33.94 2.69
2717 3006 9.573133 AACACTTAAGTTCTGATTGACAAAAAG 57.427 29.630 5.07 0.00 0.00 2.27
3175 3479 2.928116 GCCGACTGTGTCATTAACCTAC 59.072 50.000 0.00 0.00 32.09 3.18
3208 3512 7.157347 CCACATCATTATCCATATATCTCCCG 58.843 42.308 0.00 0.00 0.00 5.14
3751 4056 7.299246 AGTATTACCTAAGTACGAATGGCAT 57.701 36.000 0.00 0.00 0.00 4.40
3786 4091 2.559668 CAAGCATGAAAAGCTCAGGGAA 59.440 45.455 0.00 0.00 42.53 3.97
3789 4094 1.544691 AGCAAGCATGAAAAGCTCAGG 59.455 47.619 0.00 0.00 42.53 3.86
3893 4198 2.478872 TGGAAAATGACCCCAACCAA 57.521 45.000 0.00 0.00 0.00 3.67
3894 4199 2.255406 CATGGAAAATGACCCCAACCA 58.745 47.619 0.00 0.00 33.15 3.67
3895 4200 1.066215 GCATGGAAAATGACCCCAACC 60.066 52.381 0.00 0.00 33.15 3.77
3896 4201 1.901833 AGCATGGAAAATGACCCCAAC 59.098 47.619 0.00 0.00 33.15 3.77
3897 4202 2.323999 AGCATGGAAAATGACCCCAA 57.676 45.000 0.00 0.00 33.15 4.12
3899 4204 6.267471 TCAATATTAGCATGGAAAATGACCCC 59.733 38.462 0.00 0.00 0.00 4.95
3901 4206 6.865205 GCTCAATATTAGCATGGAAAATGACC 59.135 38.462 10.29 0.00 39.83 4.02
3902 4207 7.594015 CAGCTCAATATTAGCATGGAAAATGAC 59.406 37.037 15.00 0.00 42.62 3.06
3903 4208 7.286087 ACAGCTCAATATTAGCATGGAAAATGA 59.714 33.333 15.00 0.00 42.62 2.57
3904 4209 7.431249 ACAGCTCAATATTAGCATGGAAAATG 58.569 34.615 15.00 7.66 42.62 2.32
3905 4210 7.592885 ACAGCTCAATATTAGCATGGAAAAT 57.407 32.000 15.00 0.00 42.62 1.82
3906 4211 7.122501 TCAACAGCTCAATATTAGCATGGAAAA 59.877 33.333 15.00 0.00 42.62 2.29
3907 4212 6.602803 TCAACAGCTCAATATTAGCATGGAAA 59.397 34.615 15.00 0.32 42.62 3.13
3908 4213 6.038603 GTCAACAGCTCAATATTAGCATGGAA 59.961 38.462 15.00 1.39 42.62 3.53
3909 4214 5.528690 GTCAACAGCTCAATATTAGCATGGA 59.471 40.000 15.00 6.81 42.62 3.41
3910 4215 5.297527 TGTCAACAGCTCAATATTAGCATGG 59.702 40.000 15.00 9.06 42.62 3.66
3911 4216 6.367686 TGTCAACAGCTCAATATTAGCATG 57.632 37.500 15.00 12.64 42.62 4.06
3912 4217 7.578310 ATTGTCAACAGCTCAATATTAGCAT 57.422 32.000 15.00 4.76 42.62 3.79
3913 4218 8.504812 TTATTGTCAACAGCTCAATATTAGCA 57.495 30.769 15.00 0.00 42.62 3.49
3923 4228 9.226345 GCATTTAACTATTATTGTCAACAGCTC 57.774 33.333 0.00 0.00 0.00 4.09
3924 4229 8.739039 TGCATTTAACTATTATTGTCAACAGCT 58.261 29.630 0.00 0.00 0.00 4.24
3925 4230 8.798153 GTGCATTTAACTATTATTGTCAACAGC 58.202 33.333 0.00 0.00 0.00 4.40
3926 4231 9.838975 TGTGCATTTAACTATTATTGTCAACAG 57.161 29.630 0.00 0.00 0.00 3.16
3929 4234 9.853555 CCTTGTGCATTTAACTATTATTGTCAA 57.146 29.630 0.00 0.00 0.00 3.18
3930 4235 9.237187 TCCTTGTGCATTTAACTATTATTGTCA 57.763 29.630 0.00 0.00 0.00 3.58
3933 4238 9.023967 GCTTCCTTGTGCATTTAACTATTATTG 57.976 33.333 0.00 0.00 0.00 1.90
3934 4239 8.748412 TGCTTCCTTGTGCATTTAACTATTATT 58.252 29.630 0.00 0.00 33.94 1.40
3935 4240 8.292444 TGCTTCCTTGTGCATTTAACTATTAT 57.708 30.769 0.00 0.00 33.94 1.28
3936 4241 7.393234 ACTGCTTCCTTGTGCATTTAACTATTA 59.607 33.333 0.00 0.00 38.59 0.98
3937 4242 6.209391 ACTGCTTCCTTGTGCATTTAACTATT 59.791 34.615 0.00 0.00 38.59 1.73
3938 4243 5.711976 ACTGCTTCCTTGTGCATTTAACTAT 59.288 36.000 0.00 0.00 38.59 2.12
3939 4244 5.048782 CACTGCTTCCTTGTGCATTTAACTA 60.049 40.000 0.00 0.00 38.59 2.24
3940 4245 3.891366 ACTGCTTCCTTGTGCATTTAACT 59.109 39.130 0.00 0.00 38.59 2.24
3941 4246 3.983344 CACTGCTTCCTTGTGCATTTAAC 59.017 43.478 0.00 0.00 38.59 2.01
3942 4247 3.636300 ACACTGCTTCCTTGTGCATTTAA 59.364 39.130 0.00 0.00 38.59 1.52
3943 4248 3.221771 ACACTGCTTCCTTGTGCATTTA 58.778 40.909 0.00 0.00 38.59 1.40
3946 4251 1.202855 AGACACTGCTTCCTTGTGCAT 60.203 47.619 0.00 0.00 38.59 3.96
4158 4464 1.131504 GAACACAGCCGTGACAAAACA 59.868 47.619 7.16 0.00 46.80 2.83
4219 4540 5.571454 ATCTAACTAGACAATTGCACAGGCA 60.571 40.000 5.05 0.00 41.12 4.75
4244 4565 3.606687 AGGTGTGACGAAACAAACTCTT 58.393 40.909 0.00 0.00 0.00 2.85
4269 4591 9.290483 ACAAAAACGAAAAACAAAACAAACATT 57.710 22.222 0.00 0.00 0.00 2.71
4418 4781 9.936329 TGCATCCATCTATTAGTGACCTATATA 57.064 33.333 0.00 0.00 0.00 0.86
4419 4782 8.700051 GTGCATCCATCTATTAGTGACCTATAT 58.300 37.037 0.00 0.00 0.00 0.86
4420 4783 7.895962 AGTGCATCCATCTATTAGTGACCTATA 59.104 37.037 0.00 0.00 0.00 1.31
4421 4784 6.728164 AGTGCATCCATCTATTAGTGACCTAT 59.272 38.462 0.00 0.00 0.00 2.57
4422 4785 6.015095 CAGTGCATCCATCTATTAGTGACCTA 60.015 42.308 0.00 0.00 0.00 3.08
4423 4786 4.904251 AGTGCATCCATCTATTAGTGACCT 59.096 41.667 0.00 0.00 0.00 3.85
4424 4787 4.993584 CAGTGCATCCATCTATTAGTGACC 59.006 45.833 0.00 0.00 0.00 4.02
4425 4788 5.847304 TCAGTGCATCCATCTATTAGTGAC 58.153 41.667 0.00 0.00 0.00 3.67
4426 4789 5.600069 ACTCAGTGCATCCATCTATTAGTGA 59.400 40.000 0.00 0.00 0.00 3.41
4427 4790 5.851720 ACTCAGTGCATCCATCTATTAGTG 58.148 41.667 0.00 0.00 0.00 2.74
4428 4791 6.295011 GCTACTCAGTGCATCCATCTATTAGT 60.295 42.308 0.00 0.00 0.00 2.24
4429 4792 6.098679 GCTACTCAGTGCATCCATCTATTAG 58.901 44.000 0.00 0.00 0.00 1.73
4430 4793 5.539955 TGCTACTCAGTGCATCCATCTATTA 59.460 40.000 0.00 0.00 33.94 0.98
4455 4818 4.071961 TCATCGGGTATCAAGAATGGTG 57.928 45.455 0.00 0.00 0.00 4.17
4502 4866 4.855715 TCATCAGGAACTATCACCGATC 57.144 45.455 0.00 0.00 36.02 3.69
4692 5063 4.764050 TCCACTTAGGTTGAAACAGTCA 57.236 40.909 0.00 0.00 39.02 3.41
4728 5099 4.398988 TCAGCATGTTAATCAATGGTCACC 59.601 41.667 0.00 0.00 37.40 4.02
4952 5323 4.214971 CAGCTGCTGAACTTCTTGTAATGT 59.785 41.667 24.88 0.00 32.44 2.71
4955 5326 2.549754 GCAGCTGCTGAACTTCTTGTAA 59.450 45.455 32.30 0.00 38.21 2.41
4985 5356 4.805956 CCCCGAGGAGATCTGAAAGAGTC 61.806 56.522 0.00 0.00 41.28 3.36
5132 5503 2.025887 ACTCTGGGTTCAATCCATCCAC 60.026 50.000 0.00 0.00 33.29 4.02
5181 5552 4.916870 ACGTTCGAAGGGAAAAGAAAAAG 58.083 39.130 20.83 0.00 36.14 2.27
5202 5575 0.252197 ACCACCAGGCGATTAGGAAC 59.748 55.000 0.00 0.00 39.06 3.62
5405 5778 3.886505 GGATTACAAAACACCACCAGACA 59.113 43.478 0.00 0.00 0.00 3.41
5554 5928 3.865011 TCTGAAGACAGAGATGAGCAC 57.135 47.619 0.00 0.00 46.55 4.40
5585 5959 5.575606 GCAGTTGGATCAAATTCAGACAATG 59.424 40.000 0.00 0.00 0.00 2.82
5586 5960 5.479375 AGCAGTTGGATCAAATTCAGACAAT 59.521 36.000 0.00 0.00 0.00 2.71
5630 6013 5.596361 TGACAATGGTGGATTTTTGTACACT 59.404 36.000 0.00 0.00 32.73 3.55
5639 6022 3.698040 GAGCAGATGACAATGGTGGATTT 59.302 43.478 0.92 0.00 0.00 2.17
5641 6024 2.508716 AGAGCAGATGACAATGGTGGAT 59.491 45.455 0.92 0.00 0.00 3.41
5653 6036 2.036089 TCATAGCAGAGCAGAGCAGATG 59.964 50.000 0.00 0.00 0.00 2.90
5655 6038 1.772836 TCATAGCAGAGCAGAGCAGA 58.227 50.000 0.00 0.00 0.00 4.26
5656 6039 2.598686 TTCATAGCAGAGCAGAGCAG 57.401 50.000 0.00 0.00 0.00 4.24
5657 6040 2.235650 AGTTTCATAGCAGAGCAGAGCA 59.764 45.455 0.00 0.00 0.00 4.26
5658 6041 2.865551 GAGTTTCATAGCAGAGCAGAGC 59.134 50.000 0.00 0.00 0.00 4.09
5659 6042 3.118847 TGGAGTTTCATAGCAGAGCAGAG 60.119 47.826 0.00 0.00 0.00 3.35
5671 6054 3.498774 AGCAAGACTGTGGAGTTTCAT 57.501 42.857 0.00 0.00 30.16 2.57
5679 6062 4.258702 ACTGTAACTAGCAAGACTGTGG 57.741 45.455 0.00 0.00 0.00 4.17
5683 6066 7.380431 CAGTAGTACTGTAACTAGCAAGACT 57.620 40.000 20.29 0.00 41.19 3.24
5708 6091 9.577110 CGTCTGACAAAATATAGTTGTAAGGTA 57.423 33.333 8.73 0.00 39.29 3.08
5740 6142 1.144057 CGGCAAGGGTAGCTTCGAT 59.856 57.895 0.00 0.00 0.00 3.59
5773 6175 1.860078 CAGTCGCCGGAAACAACTC 59.140 57.895 5.05 0.00 0.00 3.01
5858 6260 4.700365 GCAGGCGCACCGGAAAAC 62.700 66.667 9.46 0.00 42.76 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.