Multiple sequence alignment - TraesCS1D01G343800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G343800 chr1D 100.000 9167 0 0 1 9167 432715571 432706405 0.000000e+00 16929
1 TraesCS1D01G343800 chr1D 83.733 1709 180 57 4866 6536 432403895 432402247 0.000000e+00 1526
2 TraesCS1D01G343800 chr1D 90.561 392 33 4 1 391 143451660 143451272 4.910000e-142 516
3 TraesCS1D01G343800 chr1D 89.975 399 35 5 1 397 160034925 160034530 2.280000e-140 510
4 TraesCS1D01G343800 chr1D 90.306 392 30 6 1 391 452335487 452335103 2.950000e-139 507
5 TraesCS1D01G343800 chr1D 83.002 453 49 16 6693 7123 432401900 432401454 1.440000e-102 385
6 TraesCS1D01G343800 chr1D 84.365 307 33 5 3881 4184 432711586 432711292 4.190000e-73 287
7 TraesCS1D01G343800 chr1D 84.365 307 33 5 3986 4280 432711691 432711388 4.190000e-73 287
8 TraesCS1D01G343800 chr1D 79.054 296 47 9 8081 8366 432401050 432400760 1.220000e-43 189
9 TraesCS1D01G343800 chr1A 94.615 7781 287 68 568 8291 531059671 531051966 0.000000e+00 11926
10 TraesCS1D01G343800 chr1A 82.516 1590 203 41 6693 8235 531017411 531015850 0.000000e+00 1327
11 TraesCS1D01G343800 chr1A 86.392 632 48 18 5904 6533 531018359 531017764 0.000000e+00 656
12 TraesCS1D01G343800 chr1A 88.830 376 33 7 8342 8712 531051957 531051586 3.900000e-123 453
13 TraesCS1D01G343800 chr1A 82.869 467 33 21 8709 9167 531051628 531051201 8.690000e-100 375
14 TraesCS1D01G343800 chr1A 84.091 308 34 10 3880 4184 531056243 531055948 5.420000e-72 283
15 TraesCS1D01G343800 chr1A 83.882 304 40 3 3986 4280 531056347 531056044 1.950000e-71 281
16 TraesCS1D01G343800 chr1A 96.471 85 3 0 8838 8922 531015377 531015293 3.450000e-29 141
17 TraesCS1D01G343800 chr1B 96.432 3223 99 13 3693 6910 584112855 584109644 0.000000e+00 5301
18 TraesCS1D01G343800 chr1B 94.383 3062 115 23 659 3694 584116009 584112979 0.000000e+00 4649
19 TraesCS1D01G343800 chr1B 94.362 1898 85 12 6860 8751 584109641 584107760 0.000000e+00 2892
20 TraesCS1D01G343800 chr1B 88.344 1081 105 16 5380 6448 583981649 583980578 0.000000e+00 1279
21 TraesCS1D01G343800 chr1B 80.982 1120 152 33 7145 8235 583976068 583974981 0.000000e+00 832
22 TraesCS1D01G343800 chr1B 83.893 298 39 2 3986 4274 584112666 584112369 9.070000e-70 276
23 TraesCS1D01G343800 chr1B 83.333 306 36 5 3882 4184 584112560 584112267 1.520000e-67 268
24 TraesCS1D01G343800 chr1B 88.194 144 11 4 530 667 584116312 584116169 5.690000e-37 167
25 TraesCS1D01G343800 chr1B 80.909 220 25 10 8820 9035 584107585 584107379 3.430000e-34 158
26 TraesCS1D01G343800 chr1B 92.784 97 6 1 8830 8925 583974538 583974442 1.240000e-28 139
27 TraesCS1D01G343800 chr6D 90.840 393 31 5 1 391 308945583 308945194 1.050000e-143 521
28 TraesCS1D01G343800 chr2D 90.299 402 32 7 1 402 607987974 607987580 3.790000e-143 520
29 TraesCS1D01G343800 chr5A 89.776 401 35 6 1 400 619464437 619464042 8.210000e-140 508
30 TraesCS1D01G343800 chr7B 89.776 401 34 6 1 399 695498932 695499327 2.950000e-139 507
31 TraesCS1D01G343800 chr7B 89.526 401 37 5 1 399 509850260 509850657 3.820000e-138 503
32 TraesCS1D01G343800 chr7B 92.553 94 5 2 8830 8923 480799899 480799990 5.770000e-27 134
33 TraesCS1D01G343800 chr7B 87.931 116 11 3 8801 8915 657623499 657623386 5.770000e-27 134
34 TraesCS1D01G343800 chr7B 95.238 84 3 1 8830 8913 657367592 657367674 2.080000e-26 132
35 TraesCS1D01G343800 chr2B 88.889 414 37 8 1 411 756947940 756947533 1.370000e-137 501
36 TraesCS1D01G343800 chr3D 78.125 800 148 20 5669 6457 381636904 381636121 4.980000e-132 483
37 TraesCS1D01G343800 chr3D 92.157 102 5 3 8830 8930 394196273 394196372 3.450000e-29 141
38 TraesCS1D01G343800 chr3D 92.784 97 4 3 8830 8924 546293921 546294016 4.460000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G343800 chr1D 432706405 432715571 9166 True 16929.000000 16929 100.000000 1 9167 1 chr1D.!!$R3 9166
1 TraesCS1D01G343800 chr1D 432400760 432403895 3135 True 700.000000 1526 81.929667 4866 8366 3 chr1D.!!$R5 3500
2 TraesCS1D01G343800 chr1A 531051201 531059671 8470 True 2663.600000 11926 86.857400 568 9167 5 chr1A.!!$R2 8599
3 TraesCS1D01G343800 chr1A 531015293 531018359 3066 True 708.000000 1327 88.459667 5904 8922 3 chr1A.!!$R1 3018
4 TraesCS1D01G343800 chr1B 584107379 584116312 8933 True 1958.714286 5301 88.786571 530 9035 7 chr1B.!!$R3 8505
5 TraesCS1D01G343800 chr1B 583980578 583981649 1071 True 1279.000000 1279 88.344000 5380 6448 1 chr1B.!!$R1 1068
6 TraesCS1D01G343800 chr1B 583974442 583976068 1626 True 485.500000 832 86.883000 7145 8925 2 chr1B.!!$R2 1780
7 TraesCS1D01G343800 chr3D 381636121 381636904 783 True 483.000000 483 78.125000 5669 6457 1 chr3D.!!$R1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.255890 CCGAGGTGTTCATCCCCAAT 59.744 55.000 0.00 0.00 0.00 3.16 F
801 984 0.440371 CGAGCGAGGAAAGAGCAAAC 59.560 55.000 0.00 0.00 0.00 2.93 F
1718 1935 0.108615 GTAGATGCTGGACGTGCAGT 60.109 55.000 33.30 18.39 44.04 4.40 F
2194 2411 1.673626 GGTCATGGTTTGCATTGCTGG 60.674 52.381 10.49 0.00 0.00 4.85 F
3265 3483 1.366679 AATCGAGCGTCGTCTCTGTA 58.633 50.000 12.62 2.29 41.35 2.74 F
4547 4891 5.344066 TCTCACTCTTCTGTATCGATTTGC 58.656 41.667 1.71 0.00 0.00 3.68 F
5327 5704 0.462225 TTTTTGTCGGACCGTGCTGA 60.462 50.000 14.79 0.00 0.00 4.26 F
5334 5711 0.802222 CGGACCGTGCTGATAGTGTG 60.802 60.000 5.48 0.00 0.00 3.82 F
6764 7416 1.135689 GCCTGTATCAAAACACTGCGG 60.136 52.381 0.00 0.00 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1289 1494 0.598680 ATAGCTGATGAACTCGCCGC 60.599 55.000 0.00 0.00 0.00 6.53 R
1761 1978 2.397597 TCATCAGATGAATCCGGTGGA 58.602 47.619 10.93 0.00 36.11 4.02 R
2574 2791 4.478304 ACATGATGGTCAGGTGGCAACA 62.478 50.000 4.84 0.00 40.17 3.33 R
3815 4158 4.397064 AAAACCAAAAACAAACAGTGCG 57.603 36.364 0.00 0.00 0.00 5.34 R
4705 5052 5.964758 TGGAGCCTGCACAAATTTAAATAG 58.035 37.500 0.01 0.25 0.00 1.73 R
5557 5935 1.933853 AGGATATCGTTTCTGCGCAAC 59.066 47.619 13.05 6.02 0.00 4.17 R
6942 7672 0.465460 TCGGCATAATTGGAGTGGCC 60.465 55.000 0.00 0.00 38.04 5.36 R
7331 8222 0.178992 TCAACAGCTGAACTTGGGGG 60.179 55.000 23.35 0.00 0.00 5.40 R
8203 9144 0.109873 CGCCTCGTCGAGTTACAGTT 60.110 55.000 20.37 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.916983 TGCATGTCCTTATTATTGTGCC 57.083 40.909 0.00 0.00 0.00 5.01
24 25 4.535781 TGCATGTCCTTATTATTGTGCCT 58.464 39.130 0.00 0.00 0.00 4.75
25 26 4.338964 TGCATGTCCTTATTATTGTGCCTG 59.661 41.667 0.00 0.00 0.00 4.85
26 27 4.339247 GCATGTCCTTATTATTGTGCCTGT 59.661 41.667 0.00 0.00 0.00 4.00
27 28 5.506317 GCATGTCCTTATTATTGTGCCTGTC 60.506 44.000 0.00 0.00 0.00 3.51
28 29 5.435686 TGTCCTTATTATTGTGCCTGTCT 57.564 39.130 0.00 0.00 0.00 3.41
29 30 5.428253 TGTCCTTATTATTGTGCCTGTCTC 58.572 41.667 0.00 0.00 0.00 3.36
30 31 5.189736 TGTCCTTATTATTGTGCCTGTCTCT 59.810 40.000 0.00 0.00 0.00 3.10
31 32 6.382859 TGTCCTTATTATTGTGCCTGTCTCTA 59.617 38.462 0.00 0.00 0.00 2.43
32 33 6.926272 GTCCTTATTATTGTGCCTGTCTCTAG 59.074 42.308 0.00 0.00 0.00 2.43
33 34 5.698545 CCTTATTATTGTGCCTGTCTCTAGC 59.301 44.000 0.00 0.00 0.00 3.42
34 35 4.760530 ATTATTGTGCCTGTCTCTAGCA 57.239 40.909 0.00 0.00 0.00 3.49
35 36 4.551702 TTATTGTGCCTGTCTCTAGCAA 57.448 40.909 0.00 0.00 38.45 3.91
36 37 2.928801 TTGTGCCTGTCTCTAGCAAA 57.071 45.000 0.00 0.00 38.45 3.68
37 38 3.423539 TTGTGCCTGTCTCTAGCAAAT 57.576 42.857 0.00 0.00 38.45 2.32
38 39 3.423539 TGTGCCTGTCTCTAGCAAATT 57.576 42.857 0.00 0.00 38.45 1.82
39 40 3.754965 TGTGCCTGTCTCTAGCAAATTT 58.245 40.909 0.00 0.00 38.45 1.82
40 41 4.905429 TGTGCCTGTCTCTAGCAAATTTA 58.095 39.130 0.00 0.00 38.45 1.40
41 42 5.500234 TGTGCCTGTCTCTAGCAAATTTAT 58.500 37.500 0.00 0.00 38.45 1.40
42 43 5.586243 TGTGCCTGTCTCTAGCAAATTTATC 59.414 40.000 0.00 0.00 38.45 1.75
43 44 5.819901 GTGCCTGTCTCTAGCAAATTTATCT 59.180 40.000 0.00 0.00 38.45 1.98
44 45 6.317391 GTGCCTGTCTCTAGCAAATTTATCTT 59.683 38.462 0.00 0.00 38.45 2.40
45 46 6.540189 TGCCTGTCTCTAGCAAATTTATCTTC 59.460 38.462 0.00 0.00 32.56 2.87
46 47 6.540189 GCCTGTCTCTAGCAAATTTATCTTCA 59.460 38.462 0.00 0.00 0.00 3.02
47 48 7.066284 GCCTGTCTCTAGCAAATTTATCTTCAA 59.934 37.037 0.00 0.00 0.00 2.69
48 49 9.118300 CCTGTCTCTAGCAAATTTATCTTCAAT 57.882 33.333 0.00 0.00 0.00 2.57
58 59 9.970395 GCAAATTTATCTTCAATATCATGTCCA 57.030 29.630 0.00 0.00 0.00 4.02
64 65 7.997773 ATCTTCAATATCATGTCCAATCCTG 57.002 36.000 0.00 0.00 0.00 3.86
65 66 7.140522 TCTTCAATATCATGTCCAATCCTGA 57.859 36.000 0.00 0.00 0.00 3.86
66 67 7.752638 TCTTCAATATCATGTCCAATCCTGAT 58.247 34.615 0.00 0.00 33.21 2.90
67 68 8.222637 TCTTCAATATCATGTCCAATCCTGATT 58.777 33.333 0.00 0.00 31.20 2.57
68 69 8.771521 TTCAATATCATGTCCAATCCTGATTT 57.228 30.769 0.00 0.00 31.20 2.17
69 70 8.771521 TCAATATCATGTCCAATCCTGATTTT 57.228 30.769 0.00 0.00 31.20 1.82
70 71 8.635328 TCAATATCATGTCCAATCCTGATTTTG 58.365 33.333 0.00 0.00 37.89 2.44
71 72 4.724074 TCATGTCCAATCCTGATTTTGC 57.276 40.909 0.00 0.00 0.00 3.68
72 73 3.448301 TCATGTCCAATCCTGATTTTGCC 59.552 43.478 0.00 0.00 0.00 4.52
73 74 1.818060 TGTCCAATCCTGATTTTGCCG 59.182 47.619 0.00 0.00 0.00 5.69
74 75 2.091541 GTCCAATCCTGATTTTGCCGA 58.908 47.619 0.00 0.00 0.00 5.54
75 76 2.098117 GTCCAATCCTGATTTTGCCGAG 59.902 50.000 0.00 0.00 0.00 4.63
76 77 1.406539 CCAATCCTGATTTTGCCGAGG 59.593 52.381 0.00 0.00 0.00 4.63
77 78 2.094675 CAATCCTGATTTTGCCGAGGT 58.905 47.619 0.00 0.00 0.00 3.85
78 79 1.755179 ATCCTGATTTTGCCGAGGTG 58.245 50.000 0.00 0.00 0.00 4.00
79 80 0.400213 TCCTGATTTTGCCGAGGTGT 59.600 50.000 0.00 0.00 0.00 4.16
80 81 1.202879 TCCTGATTTTGCCGAGGTGTT 60.203 47.619 0.00 0.00 0.00 3.32
81 82 1.200020 CCTGATTTTGCCGAGGTGTTC 59.800 52.381 0.00 0.00 0.00 3.18
82 83 1.879380 CTGATTTTGCCGAGGTGTTCA 59.121 47.619 0.00 0.00 0.00 3.18
83 84 2.489329 CTGATTTTGCCGAGGTGTTCAT 59.511 45.455 0.00 0.00 0.00 2.57
84 85 2.487762 TGATTTTGCCGAGGTGTTCATC 59.512 45.455 0.00 0.00 0.00 2.92
85 86 1.243902 TTTTGCCGAGGTGTTCATCC 58.756 50.000 0.00 0.00 0.00 3.51
86 87 0.608035 TTTGCCGAGGTGTTCATCCC 60.608 55.000 0.00 0.00 0.00 3.85
87 88 2.124695 GCCGAGGTGTTCATCCCC 60.125 66.667 0.00 0.00 0.00 4.81
88 89 2.966732 GCCGAGGTGTTCATCCCCA 61.967 63.158 0.00 0.00 0.00 4.96
89 90 1.682849 CCGAGGTGTTCATCCCCAA 59.317 57.895 0.00 0.00 0.00 4.12
90 91 0.255890 CCGAGGTGTTCATCCCCAAT 59.744 55.000 0.00 0.00 0.00 3.16
91 92 1.340991 CCGAGGTGTTCATCCCCAATT 60.341 52.381 0.00 0.00 0.00 2.32
92 93 2.446435 CGAGGTGTTCATCCCCAATTT 58.554 47.619 0.00 0.00 0.00 1.82
93 94 2.164219 CGAGGTGTTCATCCCCAATTTG 59.836 50.000 0.00 0.00 0.00 2.32
94 95 3.430453 GAGGTGTTCATCCCCAATTTGA 58.570 45.455 0.00 0.00 0.00 2.69
95 96 3.831911 GAGGTGTTCATCCCCAATTTGAA 59.168 43.478 0.00 0.00 0.00 2.69
96 97 4.428570 AGGTGTTCATCCCCAATTTGAAT 58.571 39.130 0.00 0.00 32.48 2.57
97 98 4.467438 AGGTGTTCATCCCCAATTTGAATC 59.533 41.667 0.00 0.00 32.48 2.52
98 99 4.222588 GGTGTTCATCCCCAATTTGAATCA 59.777 41.667 0.00 0.00 32.48 2.57
99 100 5.413499 GTGTTCATCCCCAATTTGAATCAG 58.587 41.667 0.00 0.00 32.48 2.90
100 101 5.047092 GTGTTCATCCCCAATTTGAATCAGT 60.047 40.000 0.00 0.00 32.48 3.41
101 102 6.152661 GTGTTCATCCCCAATTTGAATCAGTA 59.847 38.462 0.00 0.00 32.48 2.74
102 103 6.152661 TGTTCATCCCCAATTTGAATCAGTAC 59.847 38.462 0.00 0.00 32.48 2.73
103 104 5.200483 TCATCCCCAATTTGAATCAGTACC 58.800 41.667 0.00 0.00 0.00 3.34
104 105 3.616219 TCCCCAATTTGAATCAGTACCG 58.384 45.455 0.00 0.00 0.00 4.02
105 106 2.687935 CCCCAATTTGAATCAGTACCGG 59.312 50.000 0.00 0.00 0.00 5.28
106 107 3.352648 CCCAATTTGAATCAGTACCGGT 58.647 45.455 13.98 13.98 0.00 5.28
107 108 4.519213 CCCAATTTGAATCAGTACCGGTA 58.481 43.478 11.16 11.16 0.00 4.02
108 109 5.130350 CCCAATTTGAATCAGTACCGGTAT 58.870 41.667 19.19 0.00 0.00 2.73
109 110 5.008613 CCCAATTTGAATCAGTACCGGTATG 59.991 44.000 19.19 16.20 0.00 2.39
110 111 5.008613 CCAATTTGAATCAGTACCGGTATGG 59.991 44.000 19.19 12.52 46.41 2.74
111 112 5.623956 ATTTGAATCAGTACCGGTATGGA 57.376 39.130 19.19 18.04 42.00 3.41
112 113 5.423704 TTTGAATCAGTACCGGTATGGAA 57.576 39.130 19.19 4.51 42.00 3.53
113 114 5.423704 TTGAATCAGTACCGGTATGGAAA 57.576 39.130 19.19 7.20 42.00 3.13
114 115 5.423704 TGAATCAGTACCGGTATGGAAAA 57.576 39.130 19.19 5.93 42.00 2.29
115 116 5.806818 TGAATCAGTACCGGTATGGAAAAA 58.193 37.500 19.19 5.60 42.00 1.94
138 139 9.598517 AAAAATACGGATAATGCATTGTTGATT 57.401 25.926 22.27 10.39 0.00 2.57
141 142 9.677567 AATACGGATAATGCATTGTTGATTAAC 57.322 29.630 22.27 1.42 37.32 2.01
142 143 7.094508 ACGGATAATGCATTGTTGATTAACA 57.905 32.000 22.27 0.00 44.66 2.41
143 144 7.715657 ACGGATAATGCATTGTTGATTAACAT 58.284 30.769 22.27 2.93 45.56 2.71
144 145 8.196771 ACGGATAATGCATTGTTGATTAACATT 58.803 29.630 22.27 0.00 45.56 2.71
145 146 8.481641 CGGATAATGCATTGTTGATTAACATTG 58.518 33.333 22.27 16.63 45.56 2.82
150 151 5.459110 CATTGTTGATTAACATTGCAGCC 57.541 39.130 10.97 0.00 45.56 4.85
151 152 3.591196 TGTTGATTAACATTGCAGCCC 57.409 42.857 0.00 0.00 41.66 5.19
152 153 2.896044 TGTTGATTAACATTGCAGCCCA 59.104 40.909 0.00 0.00 41.66 5.36
153 154 3.056678 TGTTGATTAACATTGCAGCCCAG 60.057 43.478 0.00 0.00 41.66 4.45
154 155 3.084536 TGATTAACATTGCAGCCCAGA 57.915 42.857 0.00 0.00 0.00 3.86
155 156 3.634504 TGATTAACATTGCAGCCCAGAT 58.365 40.909 0.00 0.00 0.00 2.90
156 157 4.790937 TGATTAACATTGCAGCCCAGATA 58.209 39.130 0.00 0.00 0.00 1.98
157 158 4.823442 TGATTAACATTGCAGCCCAGATAG 59.177 41.667 0.00 0.00 0.00 2.08
158 159 2.814805 AACATTGCAGCCCAGATAGT 57.185 45.000 0.00 0.00 0.00 2.12
159 160 3.931907 AACATTGCAGCCCAGATAGTA 57.068 42.857 0.00 0.00 0.00 1.82
160 161 4.443978 AACATTGCAGCCCAGATAGTAT 57.556 40.909 0.00 0.00 0.00 2.12
161 162 4.443978 ACATTGCAGCCCAGATAGTATT 57.556 40.909 0.00 0.00 0.00 1.89
162 163 4.796606 ACATTGCAGCCCAGATAGTATTT 58.203 39.130 0.00 0.00 0.00 1.40
163 164 5.203528 ACATTGCAGCCCAGATAGTATTTT 58.796 37.500 0.00 0.00 0.00 1.82
164 165 5.658190 ACATTGCAGCCCAGATAGTATTTTT 59.342 36.000 0.00 0.00 0.00 1.94
305 306 4.593597 AAACGTTTGATATGTACTGCGG 57.406 40.909 13.81 0.00 0.00 5.69
306 307 2.546778 ACGTTTGATATGTACTGCGGG 58.453 47.619 0.00 0.00 0.00 6.13
307 308 2.093869 ACGTTTGATATGTACTGCGGGT 60.094 45.455 0.00 0.00 0.00 5.28
308 309 2.933906 CGTTTGATATGTACTGCGGGTT 59.066 45.455 0.00 0.00 0.00 4.11
309 310 3.372822 CGTTTGATATGTACTGCGGGTTT 59.627 43.478 0.00 0.00 0.00 3.27
310 311 4.567558 CGTTTGATATGTACTGCGGGTTTA 59.432 41.667 0.00 0.00 0.00 2.01
311 312 5.063691 CGTTTGATATGTACTGCGGGTTTAA 59.936 40.000 0.00 0.00 0.00 1.52
312 313 6.238266 CGTTTGATATGTACTGCGGGTTTAAT 60.238 38.462 0.00 0.00 0.00 1.40
313 314 7.042590 CGTTTGATATGTACTGCGGGTTTAATA 60.043 37.037 0.00 0.00 0.00 0.98
314 315 8.780249 GTTTGATATGTACTGCGGGTTTAATAT 58.220 33.333 0.00 0.00 0.00 1.28
315 316 8.542497 TTGATATGTACTGCGGGTTTAATATC 57.458 34.615 0.00 3.70 0.00 1.63
316 317 7.672240 TGATATGTACTGCGGGTTTAATATCA 58.328 34.615 0.00 6.11 34.35 2.15
317 318 7.817478 TGATATGTACTGCGGGTTTAATATCAG 59.183 37.037 0.00 0.00 33.24 2.90
318 319 5.601583 TGTACTGCGGGTTTAATATCAGA 57.398 39.130 0.00 0.00 0.00 3.27
319 320 5.979993 TGTACTGCGGGTTTAATATCAGAA 58.020 37.500 0.00 0.00 0.00 3.02
320 321 6.408035 TGTACTGCGGGTTTAATATCAGAAA 58.592 36.000 0.00 0.00 0.00 2.52
321 322 7.051623 TGTACTGCGGGTTTAATATCAGAAAT 58.948 34.615 0.00 0.00 0.00 2.17
322 323 8.205512 TGTACTGCGGGTTTAATATCAGAAATA 58.794 33.333 0.00 0.00 0.00 1.40
323 324 9.216117 GTACTGCGGGTTTAATATCAGAAATAT 57.784 33.333 0.00 0.00 0.00 1.28
324 325 8.324163 ACTGCGGGTTTAATATCAGAAATATC 57.676 34.615 0.00 0.00 0.00 1.63
325 326 7.936847 ACTGCGGGTTTAATATCAGAAATATCA 59.063 33.333 0.00 0.00 0.00 2.15
326 327 8.322906 TGCGGGTTTAATATCAGAAATATCAG 57.677 34.615 0.00 0.00 0.00 2.90
327 328 7.390440 TGCGGGTTTAATATCAGAAATATCAGG 59.610 37.037 0.00 0.00 0.00 3.86
328 329 7.606456 GCGGGTTTAATATCAGAAATATCAGGA 59.394 37.037 0.00 0.00 0.00 3.86
329 330 9.155975 CGGGTTTAATATCAGAAATATCAGGAG 57.844 37.037 0.00 0.00 0.00 3.69
330 331 9.454859 GGGTTTAATATCAGAAATATCAGGAGG 57.545 37.037 0.00 0.00 0.00 4.30
339 340 8.146053 TCAGAAATATCAGGAGGTTTTCTACA 57.854 34.615 0.00 0.00 35.48 2.74
340 341 8.602424 TCAGAAATATCAGGAGGTTTTCTACAA 58.398 33.333 0.00 0.00 35.48 2.41
341 342 9.231297 CAGAAATATCAGGAGGTTTTCTACAAA 57.769 33.333 0.00 0.00 35.48 2.83
342 343 9.807921 AGAAATATCAGGAGGTTTTCTACAAAA 57.192 29.630 0.00 0.00 35.48 2.44
346 347 7.631717 ATCAGGAGGTTTTCTACAAAATAGC 57.368 36.000 0.00 0.00 33.98 2.97
347 348 6.539173 TCAGGAGGTTTTCTACAAAATAGCA 58.461 36.000 0.00 0.00 33.98 3.49
348 349 7.175104 TCAGGAGGTTTTCTACAAAATAGCAT 58.825 34.615 0.00 0.00 33.98 3.79
349 350 7.121168 TCAGGAGGTTTTCTACAAAATAGCATG 59.879 37.037 0.00 0.00 33.98 4.06
350 351 7.121168 CAGGAGGTTTTCTACAAAATAGCATGA 59.879 37.037 0.00 0.00 33.98 3.07
351 352 7.121315 AGGAGGTTTTCTACAAAATAGCATGAC 59.879 37.037 0.00 0.00 33.98 3.06
352 353 6.842163 AGGTTTTCTACAAAATAGCATGACG 58.158 36.000 0.00 0.00 33.98 4.35
353 354 6.027749 GGTTTTCTACAAAATAGCATGACGG 58.972 40.000 0.00 0.00 33.98 4.79
354 355 6.128117 GGTTTTCTACAAAATAGCATGACGGA 60.128 38.462 0.00 0.00 33.98 4.69
355 356 6.417191 TTTCTACAAAATAGCATGACGGAC 57.583 37.500 0.00 0.00 0.00 4.79
356 357 5.339008 TCTACAAAATAGCATGACGGACT 57.661 39.130 0.00 0.00 0.00 3.85
357 358 6.459670 TCTACAAAATAGCATGACGGACTA 57.540 37.500 0.00 0.00 0.00 2.59
358 359 6.869695 TCTACAAAATAGCATGACGGACTAA 58.130 36.000 0.00 0.00 0.00 2.24
359 360 6.978659 TCTACAAAATAGCATGACGGACTAAG 59.021 38.462 0.00 0.00 0.00 2.18
360 361 5.730550 ACAAAATAGCATGACGGACTAAGA 58.269 37.500 0.00 0.00 0.00 2.10
361 362 6.170506 ACAAAATAGCATGACGGACTAAGAA 58.829 36.000 0.00 0.00 0.00 2.52
362 363 6.823689 ACAAAATAGCATGACGGACTAAGAAT 59.176 34.615 0.00 0.00 0.00 2.40
363 364 7.985184 ACAAAATAGCATGACGGACTAAGAATA 59.015 33.333 0.00 0.00 0.00 1.75
364 365 7.948278 AAATAGCATGACGGACTAAGAATAC 57.052 36.000 0.00 0.00 0.00 1.89
365 366 4.323553 AGCATGACGGACTAAGAATACC 57.676 45.455 0.00 0.00 0.00 2.73
366 367 3.961408 AGCATGACGGACTAAGAATACCT 59.039 43.478 0.00 0.00 0.00 3.08
367 368 5.138276 AGCATGACGGACTAAGAATACCTA 58.862 41.667 0.00 0.00 0.00 3.08
368 369 5.775701 AGCATGACGGACTAAGAATACCTAT 59.224 40.000 0.00 0.00 0.00 2.57
369 370 6.267928 AGCATGACGGACTAAGAATACCTATT 59.732 38.462 0.00 0.00 0.00 1.73
370 371 6.929606 GCATGACGGACTAAGAATACCTATTT 59.070 38.462 0.00 0.00 0.00 1.40
371 372 7.116519 GCATGACGGACTAAGAATACCTATTTC 59.883 40.741 0.00 0.00 0.00 2.17
372 373 7.893124 TGACGGACTAAGAATACCTATTTCT 57.107 36.000 0.00 0.00 0.00 2.52
373 374 8.302515 TGACGGACTAAGAATACCTATTTCTT 57.697 34.615 4.33 4.33 0.00 2.52
374 375 8.755977 TGACGGACTAAGAATACCTATTTCTTT 58.244 33.333 4.22 0.00 0.00 2.52
375 376 9.597170 GACGGACTAAGAATACCTATTTCTTTT 57.403 33.333 4.22 0.00 0.00 2.27
447 448 9.552114 GTTATTGACATATGCTATTCAATGAGC 57.448 33.333 21.06 11.82 38.75 4.26
448 449 7.997773 ATTGACATATGCTATTCAATGAGCT 57.002 32.000 14.98 0.00 37.32 4.09
449 450 7.812690 TTGACATATGCTATTCAATGAGCTT 57.187 32.000 1.58 0.00 39.54 3.74
450 451 8.907222 TTGACATATGCTATTCAATGAGCTTA 57.093 30.769 1.58 0.00 39.54 3.09
451 452 8.543862 TGACATATGCTATTCAATGAGCTTAG 57.456 34.615 1.58 0.00 39.54 2.18
452 453 8.152898 TGACATATGCTATTCAATGAGCTTAGT 58.847 33.333 1.58 0.00 39.54 2.24
453 454 8.545229 ACATATGCTATTCAATGAGCTTAGTC 57.455 34.615 1.58 0.00 39.54 2.59
454 455 8.152898 ACATATGCTATTCAATGAGCTTAGTCA 58.847 33.333 1.58 0.00 39.54 3.41
455 456 8.996271 CATATGCTATTCAATGAGCTTAGTCAA 58.004 33.333 0.00 0.00 39.54 3.18
456 457 7.870509 ATGCTATTCAATGAGCTTAGTCAAA 57.129 32.000 0.00 0.00 39.54 2.69
457 458 7.870509 TGCTATTCAATGAGCTTAGTCAAAT 57.129 32.000 0.00 0.00 39.54 2.32
458 459 8.962884 TGCTATTCAATGAGCTTAGTCAAATA 57.037 30.769 0.00 0.00 39.54 1.40
459 460 9.049523 TGCTATTCAATGAGCTTAGTCAAATAG 57.950 33.333 10.73 10.73 39.54 1.73
460 461 9.265901 GCTATTCAATGAGCTTAGTCAAATAGA 57.734 33.333 15.86 0.00 31.79 1.98
501 502 8.589335 AAACTTATATACGTATTGCCTCTGTG 57.411 34.615 14.33 0.00 0.00 3.66
502 503 7.520451 ACTTATATACGTATTGCCTCTGTGA 57.480 36.000 14.33 0.00 0.00 3.58
503 504 7.948357 ACTTATATACGTATTGCCTCTGTGAA 58.052 34.615 14.33 0.00 0.00 3.18
504 505 8.082852 ACTTATATACGTATTGCCTCTGTGAAG 58.917 37.037 14.33 5.52 0.00 3.02
505 506 6.650427 ATATACGTATTGCCTCTGTGAAGA 57.350 37.500 14.33 0.00 0.00 2.87
506 507 3.678056 ACGTATTGCCTCTGTGAAGAA 57.322 42.857 0.00 0.00 0.00 2.52
507 508 4.002906 ACGTATTGCCTCTGTGAAGAAA 57.997 40.909 0.00 0.00 0.00 2.52
508 509 4.579869 ACGTATTGCCTCTGTGAAGAAAT 58.420 39.130 0.00 0.00 0.00 2.17
509 510 5.730550 ACGTATTGCCTCTGTGAAGAAATA 58.269 37.500 0.00 0.00 0.00 1.40
510 511 6.349300 ACGTATTGCCTCTGTGAAGAAATAT 58.651 36.000 0.00 0.00 0.00 1.28
511 512 7.497595 ACGTATTGCCTCTGTGAAGAAATATA 58.502 34.615 0.00 0.00 0.00 0.86
512 513 7.985184 ACGTATTGCCTCTGTGAAGAAATATAA 59.015 33.333 0.00 0.00 0.00 0.98
513 514 8.276325 CGTATTGCCTCTGTGAAGAAATATAAC 58.724 37.037 0.00 0.00 0.00 1.89
514 515 9.331282 GTATTGCCTCTGTGAAGAAATATAACT 57.669 33.333 0.00 0.00 0.00 2.24
515 516 8.814038 ATTGCCTCTGTGAAGAAATATAACTT 57.186 30.769 0.00 0.00 0.00 2.66
516 517 9.905713 ATTGCCTCTGTGAAGAAATATAACTTA 57.094 29.630 0.00 0.00 0.00 2.24
517 518 9.905713 TTGCCTCTGTGAAGAAATATAACTTAT 57.094 29.630 0.00 0.00 0.00 1.73
518 519 9.905713 TGCCTCTGTGAAGAAATATAACTTATT 57.094 29.630 0.00 0.00 0.00 1.40
675 853 3.117745 AGGGGTGGGTAAACATAGTACC 58.882 50.000 0.00 0.00 40.38 3.34
799 982 1.738099 GCGAGCGAGGAAAGAGCAA 60.738 57.895 0.00 0.00 0.00 3.91
800 983 1.291877 GCGAGCGAGGAAAGAGCAAA 61.292 55.000 0.00 0.00 0.00 3.68
801 984 0.440371 CGAGCGAGGAAAGAGCAAAC 59.560 55.000 0.00 0.00 0.00 2.93
802 985 0.799393 GAGCGAGGAAAGAGCAAACC 59.201 55.000 0.00 0.00 0.00 3.27
824 1007 1.136110 ACCAACCCGAAACAAAAGCAG 59.864 47.619 0.00 0.00 0.00 4.24
919 1107 2.791927 GAAACCCTCGATTGCCGC 59.208 61.111 0.00 0.00 38.37 6.53
920 1108 2.750237 AAACCCTCGATTGCCGCC 60.750 61.111 0.00 0.00 38.37 6.13
1042 1241 4.024984 AGGGGCTCCAGGCAGGTA 62.025 66.667 4.79 0.00 44.01 3.08
1070 1269 1.274167 TGAACTCCGATTGCTTACCGT 59.726 47.619 0.00 0.00 0.00 4.83
1077 1276 0.793861 GATTGCTTACCGTGTTGCGA 59.206 50.000 0.00 0.00 44.77 5.10
1106 1305 2.964389 GCGAGCTCGATTCCTGGC 60.964 66.667 38.74 15.11 43.02 4.85
1131 1331 1.663135 GAGCGTGCTCTCCAGATTTTC 59.337 52.381 14.43 0.00 39.80 2.29
1173 1373 6.071278 AGCTATATGGAACCCGACTATTCTTC 60.071 42.308 0.00 0.00 0.00 2.87
1188 1388 6.648192 ACTATTCTTCAGCTCTAATGTGCTT 58.352 36.000 0.00 0.00 40.55 3.91
1190 1390 5.869753 TTCTTCAGCTCTAATGTGCTTTC 57.130 39.130 0.00 0.00 40.55 2.62
1196 1396 3.929610 AGCTCTAATGTGCTTTCGACTTC 59.070 43.478 0.00 0.00 39.66 3.01
1266 1468 6.910536 TCGAGAATAGGAGCTCAAATTTTC 57.089 37.500 17.19 16.03 0.00 2.29
1267 1469 6.406370 TCGAGAATAGGAGCTCAAATTTTCA 58.594 36.000 17.19 7.24 0.00 2.69
1386 1596 6.912591 CGAATTTTGGTTAGTGAGATTATGGC 59.087 38.462 0.00 0.00 0.00 4.40
1413 1623 7.000472 CCCAGATTTTCCTGAGCTCAATTATA 59.000 38.462 18.85 3.96 36.29 0.98
1525 1742 5.975410 ATTAACTCGCTGCTGTTAAGATC 57.025 39.130 22.29 0.00 40.48 2.75
1554 1771 1.645034 ATGCCGTCAGAGTTCGATTG 58.355 50.000 0.00 0.00 0.00 2.67
1559 1776 3.799035 CCGTCAGAGTTCGATTGTTTTG 58.201 45.455 0.00 0.00 0.00 2.44
1560 1777 3.493129 CCGTCAGAGTTCGATTGTTTTGA 59.507 43.478 0.00 0.00 0.00 2.69
1563 1780 6.128661 CCGTCAGAGTTCGATTGTTTTGATTA 60.129 38.462 0.00 0.00 0.00 1.75
1564 1781 7.413000 CCGTCAGAGTTCGATTGTTTTGATTAT 60.413 37.037 0.00 0.00 0.00 1.28
1565 1782 7.957484 CGTCAGAGTTCGATTGTTTTGATTATT 59.043 33.333 0.00 0.00 0.00 1.40
1617 1834 2.040278 CAAGGGACCCTCTGAAATGTCA 59.960 50.000 15.27 0.00 30.89 3.58
1713 1930 0.532573 CCTGTGTAGATGCTGGACGT 59.467 55.000 0.00 0.00 0.00 4.34
1718 1935 0.108615 GTAGATGCTGGACGTGCAGT 60.109 55.000 33.30 18.39 44.04 4.40
1897 2114 3.343380 GAAACGTTTGGGTTTCGTGAT 57.657 42.857 20.10 0.00 44.25 3.06
1901 2118 1.871039 CGTTTGGGTTTCGTGATCTGT 59.129 47.619 0.00 0.00 0.00 3.41
2194 2411 1.673626 GGTCATGGTTTGCATTGCTGG 60.674 52.381 10.49 0.00 0.00 4.85
2574 2791 8.470002 GCTCTGGAATTATCTAACAATGGTTTT 58.530 33.333 0.00 0.00 38.45 2.43
3265 3483 1.366679 AATCGAGCGTCGTCTCTGTA 58.633 50.000 12.62 2.29 41.35 2.74
3610 3828 8.082852 GGTATGACTCGTGTGTGAATATTCTAT 58.917 37.037 16.24 0.00 0.00 1.98
3854 4198 5.820947 TGGTTTTTACAGGAAGAGAAGTCAC 59.179 40.000 0.00 0.00 0.00 3.67
3914 4258 7.427214 TGTTGTCCGGTTAATAAAAGAAAAGG 58.573 34.615 0.00 0.00 0.00 3.11
4322 4666 9.612066 AAATAAAGACAAAGCAAATGGAAGAAA 57.388 25.926 0.00 0.00 0.00 2.52
4547 4891 5.344066 TCTCACTCTTCTGTATCGATTTGC 58.656 41.667 1.71 0.00 0.00 3.68
4566 4910 8.246180 CGATTTGCAATGATAGGGCTTAAATAT 58.754 33.333 0.00 0.00 0.00 1.28
4582 4926 8.821894 GGCTTAAATATATCATCAAGGTCGATC 58.178 37.037 0.00 0.00 0.00 3.69
5092 5464 5.705609 TTTGCTTCTCAGGGTACAATTTC 57.294 39.130 0.00 0.00 0.00 2.17
5327 5704 0.462225 TTTTTGTCGGACCGTGCTGA 60.462 50.000 14.79 0.00 0.00 4.26
5334 5711 0.802222 CGGACCGTGCTGATAGTGTG 60.802 60.000 5.48 0.00 0.00 3.82
5557 5935 5.657470 TCGTGATCTTCTGTCAAACAAAG 57.343 39.130 0.00 0.00 0.00 2.77
6106 6554 7.739825 AGGCTCAGCATATTAACAAATCTCTA 58.260 34.615 0.00 0.00 0.00 2.43
6249 6701 3.536956 AATCATGCATTTGGAGGCTTG 57.463 42.857 0.00 0.00 38.58 4.01
6343 6795 6.316140 TCCAAATAAATCCTGATGTTGAGTCG 59.684 38.462 0.00 0.00 0.00 4.18
6473 6928 8.877195 TGGAACAGGTTCTTATACTTTAGTCTT 58.123 33.333 11.56 0.00 39.45 3.01
6512 6967 5.011090 AGCTGGAGTTTGTTTTCCTTTTC 57.989 39.130 0.00 0.00 34.48 2.29
6513 6968 4.711846 AGCTGGAGTTTGTTTTCCTTTTCT 59.288 37.500 0.00 0.00 34.48 2.52
6520 6975 6.930731 AGTTTGTTTTCCTTTTCTGCACTTA 58.069 32.000 0.00 0.00 0.00 2.24
6521 6976 7.382898 AGTTTGTTTTCCTTTTCTGCACTTAA 58.617 30.769 0.00 0.00 0.00 1.85
6522 6977 7.545615 AGTTTGTTTTCCTTTTCTGCACTTAAG 59.454 33.333 0.00 0.00 0.00 1.85
6535 7127 8.951787 TTCTGCACTTAAGAACTGTTTTAGTA 57.048 30.769 10.09 0.00 39.18 1.82
6536 7128 8.589335 TCTGCACTTAAGAACTGTTTTAGTAG 57.411 34.615 10.09 0.00 39.18 2.57
6539 7131 6.932960 GCACTTAAGAACTGTTTTAGTAGGGA 59.067 38.462 10.09 0.00 39.18 4.20
6542 7142 9.557061 ACTTAAGAACTGTTTTAGTAGGGAAAG 57.443 33.333 10.09 0.00 39.18 2.62
6637 7238 9.579768 CTCAAGATAGATATTTCCGTTCTATGG 57.420 37.037 0.00 0.00 33.83 2.74
6764 7416 1.135689 GCCTGTATCAAAACACTGCGG 60.136 52.381 0.00 0.00 0.00 5.69
7005 7735 4.335400 TTCCCTCTTTGGAAAAATGCAC 57.665 40.909 0.00 0.00 41.40 4.57
7006 7736 3.575805 TCCCTCTTTGGAAAAATGCACT 58.424 40.909 0.00 0.00 38.35 4.40
7092 7827 7.307989 CCATAGATAAAACGAGGGCTTACAATG 60.308 40.741 0.00 0.00 0.00 2.82
7167 8050 5.313280 ACTAATTGAAACCCCACACTGTA 57.687 39.130 0.00 0.00 0.00 2.74
7314 8205 1.818642 ATTGAGCAGCTCCAAGTCAC 58.181 50.000 20.16 0.00 0.00 3.67
7331 8222 6.851330 CCAAGTCACGAAAGACAAAGATAAAC 59.149 38.462 9.34 0.00 40.98 2.01
7344 8240 3.087370 AGATAAACCCCCAAGTTCAGC 57.913 47.619 0.00 0.00 0.00 4.26
7414 8310 6.051074 TGAGACATCGCTGATCACATTAAAT 58.949 36.000 0.00 0.00 0.00 1.40
7585 8488 4.079970 CGGAGTATACTATTGGCAGGAGA 58.920 47.826 5.09 0.00 0.00 3.71
7658 8561 6.852664 TCTTTCTTTCCTATTTCATTTCCGC 58.147 36.000 0.00 0.00 0.00 5.54
7877 8791 3.084786 CTCCAGATCAAAACCAAGGGAC 58.915 50.000 0.00 0.00 0.00 4.46
7880 8794 1.073923 AGATCAAAACCAAGGGACGCT 59.926 47.619 0.00 0.00 0.00 5.07
7906 8820 7.173218 TGTTTTGAAGACTCCAAGTAAGCATAG 59.827 37.037 0.00 0.00 0.00 2.23
7916 8830 6.779860 TCCAAGTAAGCATAGGACTTCTTTT 58.220 36.000 0.00 0.00 31.04 2.27
7936 8850 7.538575 TCTTTTTAGCACCTCAAAGATATTGC 58.461 34.615 0.00 0.00 31.70 3.56
8012 8931 9.784531 CCATATAATATGTTTATCTAGGCCTGG 57.215 37.037 17.99 14.14 0.00 4.45
8202 9143 4.195416 TGCTCGGATGTATTTTGTATGCA 58.805 39.130 0.00 0.00 0.00 3.96
8203 9144 4.637977 TGCTCGGATGTATTTTGTATGCAA 59.362 37.500 0.00 0.00 0.00 4.08
8220 9161 1.719780 GCAAACTGTAACTCGACGAGG 59.280 52.381 27.39 12.48 33.35 4.63
8223 9164 1.233285 ACTGTAACTCGACGAGGCGT 61.233 55.000 27.39 15.01 45.10 5.68
8244 9185 3.509967 GTGAAAGGTGGAAATAGTTGGGG 59.490 47.826 0.00 0.00 0.00 4.96
8275 9216 9.326413 GCTGTAGGATAAATGTACTGTTGTAAT 57.674 33.333 0.00 0.00 0.00 1.89
8321 9262 4.006319 GCTGACAAGAGAACAAGGCTATT 58.994 43.478 0.00 0.00 0.00 1.73
8411 9357 6.968263 TGATGACAATTGACTGGGTTTTTA 57.032 33.333 13.59 0.00 0.00 1.52
8412 9358 7.353414 TGATGACAATTGACTGGGTTTTTAA 57.647 32.000 13.59 0.00 0.00 1.52
8458 9404 1.922447 TGATATTGTGGCCTCTTGGGT 59.078 47.619 3.32 0.00 37.43 4.51
8459 9405 2.092429 TGATATTGTGGCCTCTTGGGTC 60.092 50.000 3.32 0.00 40.85 4.46
8461 9407 1.434513 ATTGTGGCCTCTTGGGTCCA 61.435 55.000 3.32 0.00 39.39 4.02
8462 9408 2.034221 GTGGCCTCTTGGGTCCAC 59.966 66.667 3.32 10.62 46.58 4.02
8567 9535 1.274728 GTCTGCTCTCTCTTTCAGGCA 59.725 52.381 0.00 0.00 31.96 4.75
8578 9547 6.155910 TCTCTCTTTCAGGCATCAGTCTTTAT 59.844 38.462 0.00 0.00 0.00 1.40
8636 9673 9.745018 AAAGAAAGGAAATCAATAGTCATCAGA 57.255 29.630 0.00 0.00 0.00 3.27
8861 10053 1.737838 GGTGAGCATGGATCGAACAA 58.262 50.000 0.00 0.00 0.00 2.83
8915 10107 1.596477 CTGAGCTATCCCCGCTTGC 60.596 63.158 0.00 0.00 37.96 4.01
8922 10114 0.606944 TATCCCCGCTTGCGTGTTTT 60.607 50.000 13.97 0.00 0.00 2.43
8923 10115 0.606944 ATCCCCGCTTGCGTGTTTTA 60.607 50.000 13.97 0.00 0.00 1.52
8924 10116 1.209127 CCCCGCTTGCGTGTTTTAG 59.791 57.895 13.97 0.00 0.00 1.85
8926 10118 1.512156 CCCGCTTGCGTGTTTTAGGT 61.512 55.000 13.97 0.00 0.00 3.08
8934 10126 6.511121 CGCTTGCGTGTTTTAGGTCATTATAT 60.511 38.462 6.86 0.00 0.00 0.86
8935 10127 7.193595 GCTTGCGTGTTTTAGGTCATTATATT 58.806 34.615 0.00 0.00 0.00 1.28
8936 10128 8.339714 GCTTGCGTGTTTTAGGTCATTATATTA 58.660 33.333 0.00 0.00 0.00 0.98
8985 10177 4.021719 ACATTGCTGATTAATATGGCAGGC 60.022 41.667 0.00 0.00 34.37 4.85
8989 10181 3.439476 GCTGATTAATATGGCAGGCTCTG 59.561 47.826 0.00 0.00 34.12 3.35
9047 10246 7.047891 TCCACTGCTCATTTGTATTTACTAGG 58.952 38.462 0.00 0.00 0.00 3.02
9064 10263 7.940178 TTACTAGGATAATACACATGCGTTG 57.060 36.000 0.00 0.00 0.00 4.10
9069 10268 0.525761 AATACACATGCGTTGCCACC 59.474 50.000 0.00 0.00 0.00 4.61
9072 10271 3.353836 ACATGCGTTGCCACCGAC 61.354 61.111 0.00 0.00 0.00 4.79
9074 10273 2.593148 ATGCGTTGCCACCGACAA 60.593 55.556 0.00 0.00 0.00 3.18
9089 10288 6.978080 GCCACCGACAATTAATAATGTTTGAT 59.022 34.615 0.00 0.00 0.00 2.57
9101 10300 9.880064 TTAATAATGTTTGATGAAACGAACGAA 57.120 25.926 3.29 0.00 43.92 3.85
9102 10301 7.775729 ATAATGTTTGATGAAACGAACGAAC 57.224 32.000 3.29 0.00 43.92 3.95
9103 10302 4.601621 TGTTTGATGAAACGAACGAACA 57.398 36.364 3.29 0.00 43.92 3.18
9106 10305 4.086976 GTTTGATGAAACGAACGAACAACG 60.087 41.667 0.14 0.00 38.88 4.10
9107 10306 1.960549 GATGAAACGAACGAACAACGC 59.039 47.619 0.14 0.00 46.94 4.84
9108 10307 0.314418 TGAAACGAACGAACAACGCG 60.314 50.000 3.53 3.53 46.94 6.01
9122 10321 4.695217 ACAACGCGATAACAATCCAATT 57.305 36.364 15.93 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.010314 AGGCACAATAATAAGGACATGCATG 59.990 40.000 25.09 25.09 33.48 4.06
3 4 4.339247 ACAGGCACAATAATAAGGACATGC 59.661 41.667 0.00 0.00 0.00 4.06
7 8 5.675538 AGAGACAGGCACAATAATAAGGAC 58.324 41.667 0.00 0.00 0.00 3.85
8 9 5.957771 AGAGACAGGCACAATAATAAGGA 57.042 39.130 0.00 0.00 0.00 3.36
13 14 4.760530 TGCTAGAGACAGGCACAATAAT 57.239 40.909 0.00 0.00 0.00 1.28
14 15 4.551702 TTGCTAGAGACAGGCACAATAA 57.448 40.909 0.00 0.00 35.62 1.40
15 16 4.551702 TTTGCTAGAGACAGGCACAATA 57.448 40.909 0.00 0.00 35.62 1.90
16 17 3.423539 TTTGCTAGAGACAGGCACAAT 57.576 42.857 0.00 0.00 35.62 2.71
17 18 2.928801 TTTGCTAGAGACAGGCACAA 57.071 45.000 0.00 0.00 35.62 3.33
18 19 3.423539 AATTTGCTAGAGACAGGCACA 57.576 42.857 0.00 0.00 35.62 4.57
19 20 5.819901 AGATAAATTTGCTAGAGACAGGCAC 59.180 40.000 0.00 0.00 35.62 5.01
20 21 5.994250 AGATAAATTTGCTAGAGACAGGCA 58.006 37.500 0.00 0.00 0.00 4.75
21 22 6.540189 TGAAGATAAATTTGCTAGAGACAGGC 59.460 38.462 0.00 0.00 0.00 4.85
22 23 8.498054 TTGAAGATAAATTTGCTAGAGACAGG 57.502 34.615 0.00 0.00 0.00 4.00
32 33 9.970395 TGGACATGATATTGAAGATAAATTTGC 57.030 29.630 0.00 0.00 0.00 3.68
38 39 9.511272 CAGGATTGGACATGATATTGAAGATAA 57.489 33.333 0.00 0.00 0.00 1.75
39 40 8.883302 TCAGGATTGGACATGATATTGAAGATA 58.117 33.333 0.00 0.00 0.00 1.98
40 41 7.752638 TCAGGATTGGACATGATATTGAAGAT 58.247 34.615 0.00 0.00 0.00 2.40
41 42 7.140522 TCAGGATTGGACATGATATTGAAGA 57.859 36.000 0.00 0.00 0.00 2.87
42 43 7.997773 ATCAGGATTGGACATGATATTGAAG 57.002 36.000 0.00 0.00 39.07 3.02
43 44 8.771521 AAATCAGGATTGGACATGATATTGAA 57.228 30.769 0.00 0.00 39.75 2.69
44 45 8.635328 CAAAATCAGGATTGGACATGATATTGA 58.365 33.333 0.00 0.00 39.75 2.57
45 46 7.384115 GCAAAATCAGGATTGGACATGATATTG 59.616 37.037 0.00 0.00 39.75 1.90
46 47 7.439381 GCAAAATCAGGATTGGACATGATATT 58.561 34.615 0.00 0.00 39.75 1.28
47 48 6.014840 GGCAAAATCAGGATTGGACATGATAT 60.015 38.462 0.00 0.00 39.75 1.63
48 49 5.302568 GGCAAAATCAGGATTGGACATGATA 59.697 40.000 0.00 0.00 39.75 2.15
49 50 4.100498 GGCAAAATCAGGATTGGACATGAT 59.900 41.667 0.00 0.00 41.88 2.45
50 51 3.448301 GGCAAAATCAGGATTGGACATGA 59.552 43.478 0.00 0.00 35.17 3.07
51 52 3.735820 CGGCAAAATCAGGATTGGACATG 60.736 47.826 0.00 0.00 0.00 3.21
52 53 2.428171 CGGCAAAATCAGGATTGGACAT 59.572 45.455 0.00 0.00 0.00 3.06
53 54 1.818060 CGGCAAAATCAGGATTGGACA 59.182 47.619 0.00 0.00 0.00 4.02
54 55 2.091541 TCGGCAAAATCAGGATTGGAC 58.908 47.619 0.00 0.00 0.00 4.02
55 56 2.368439 CTCGGCAAAATCAGGATTGGA 58.632 47.619 0.00 0.00 0.00 3.53
56 57 1.406539 CCTCGGCAAAATCAGGATTGG 59.593 52.381 0.00 0.00 0.00 3.16
57 58 2.094675 ACCTCGGCAAAATCAGGATTG 58.905 47.619 0.00 0.00 0.00 2.67
58 59 2.094675 CACCTCGGCAAAATCAGGATT 58.905 47.619 0.00 0.00 0.00 3.01
59 60 1.004745 ACACCTCGGCAAAATCAGGAT 59.995 47.619 0.00 0.00 0.00 3.24
60 61 0.400213 ACACCTCGGCAAAATCAGGA 59.600 50.000 0.00 0.00 0.00 3.86
61 62 1.200020 GAACACCTCGGCAAAATCAGG 59.800 52.381 0.00 0.00 0.00 3.86
62 63 1.879380 TGAACACCTCGGCAAAATCAG 59.121 47.619 0.00 0.00 0.00 2.90
63 64 1.974265 TGAACACCTCGGCAAAATCA 58.026 45.000 0.00 0.00 0.00 2.57
64 65 2.159379 GGATGAACACCTCGGCAAAATC 60.159 50.000 0.00 0.00 0.00 2.17
65 66 1.818674 GGATGAACACCTCGGCAAAAT 59.181 47.619 0.00 0.00 0.00 1.82
66 67 1.243902 GGATGAACACCTCGGCAAAA 58.756 50.000 0.00 0.00 0.00 2.44
67 68 0.608035 GGGATGAACACCTCGGCAAA 60.608 55.000 0.00 0.00 0.00 3.68
68 69 1.002624 GGGATGAACACCTCGGCAA 60.003 57.895 0.00 0.00 0.00 4.52
69 70 2.668632 GGGATGAACACCTCGGCA 59.331 61.111 0.00 0.00 0.00 5.69
70 71 2.124695 GGGGATGAACACCTCGGC 60.125 66.667 0.00 0.00 39.39 5.54
71 72 0.255890 ATTGGGGATGAACACCTCGG 59.744 55.000 0.00 0.00 43.74 4.63
72 73 2.128771 AATTGGGGATGAACACCTCG 57.871 50.000 0.00 0.00 43.74 4.63
73 74 3.430453 TCAAATTGGGGATGAACACCTC 58.570 45.455 0.00 0.00 43.74 3.85
74 75 3.541242 TCAAATTGGGGATGAACACCT 57.459 42.857 0.00 0.00 43.74 4.00
75 76 4.222588 TGATTCAAATTGGGGATGAACACC 59.777 41.667 0.00 0.00 43.64 4.16
76 77 5.047092 ACTGATTCAAATTGGGGATGAACAC 60.047 40.000 0.00 0.00 0.00 3.32
77 78 5.085920 ACTGATTCAAATTGGGGATGAACA 58.914 37.500 0.00 0.00 0.00 3.18
78 79 5.665916 ACTGATTCAAATTGGGGATGAAC 57.334 39.130 0.00 0.00 0.00 3.18
79 80 5.656416 GGTACTGATTCAAATTGGGGATGAA 59.344 40.000 0.00 0.00 0.00 2.57
80 81 5.200483 GGTACTGATTCAAATTGGGGATGA 58.800 41.667 0.00 0.00 0.00 2.92
81 82 4.036734 CGGTACTGATTCAAATTGGGGATG 59.963 45.833 0.00 0.00 0.00 3.51
82 83 4.207165 CGGTACTGATTCAAATTGGGGAT 58.793 43.478 0.00 0.00 0.00 3.85
83 84 3.616219 CGGTACTGATTCAAATTGGGGA 58.384 45.455 0.00 0.00 0.00 4.81
84 85 2.687935 CCGGTACTGATTCAAATTGGGG 59.312 50.000 2.31 0.00 0.00 4.96
85 86 3.352648 ACCGGTACTGATTCAAATTGGG 58.647 45.455 4.49 0.00 0.00 4.12
86 87 5.008613 CCATACCGGTACTGATTCAAATTGG 59.991 44.000 18.55 12.11 0.00 3.16
87 88 5.820423 TCCATACCGGTACTGATTCAAATTG 59.180 40.000 18.55 6.46 35.57 2.32
88 89 5.996644 TCCATACCGGTACTGATTCAAATT 58.003 37.500 18.55 0.00 35.57 1.82
89 90 5.623956 TCCATACCGGTACTGATTCAAAT 57.376 39.130 18.55 0.00 35.57 2.32
90 91 5.423704 TTCCATACCGGTACTGATTCAAA 57.576 39.130 18.55 0.00 35.57 2.69
91 92 5.423704 TTTCCATACCGGTACTGATTCAA 57.576 39.130 18.55 5.22 35.57 2.69
92 93 5.423704 TTTTCCATACCGGTACTGATTCA 57.576 39.130 18.55 0.00 35.57 2.57
112 113 9.598517 AATCAACAATGCATTATCCGTATTTTT 57.401 25.926 12.53 0.00 0.00 1.94
115 116 9.677567 GTTAATCAACAATGCATTATCCGTATT 57.322 29.630 12.53 9.70 34.60 1.89
116 117 8.845227 TGTTAATCAACAATGCATTATCCGTAT 58.155 29.630 12.53 0.00 41.69 3.06
117 118 8.214721 TGTTAATCAACAATGCATTATCCGTA 57.785 30.769 12.53 0.00 41.69 4.02
118 119 7.094508 TGTTAATCAACAATGCATTATCCGT 57.905 32.000 12.53 2.71 41.69 4.69
132 133 3.193267 TCTGGGCTGCAATGTTAATCAAC 59.807 43.478 0.50 0.00 35.06 3.18
133 134 3.429492 TCTGGGCTGCAATGTTAATCAA 58.571 40.909 0.50 0.00 0.00 2.57
134 135 3.084536 TCTGGGCTGCAATGTTAATCA 57.915 42.857 0.50 0.00 0.00 2.57
135 136 4.823989 ACTATCTGGGCTGCAATGTTAATC 59.176 41.667 0.50 0.00 0.00 1.75
136 137 4.796606 ACTATCTGGGCTGCAATGTTAAT 58.203 39.130 0.50 0.00 0.00 1.40
137 138 4.235079 ACTATCTGGGCTGCAATGTTAA 57.765 40.909 0.50 0.00 0.00 2.01
138 139 3.931907 ACTATCTGGGCTGCAATGTTA 57.068 42.857 0.50 0.00 0.00 2.41
139 140 2.814805 ACTATCTGGGCTGCAATGTT 57.185 45.000 0.50 0.00 0.00 2.71
140 141 4.443978 AATACTATCTGGGCTGCAATGT 57.556 40.909 0.50 0.00 0.00 2.71
141 142 5.779529 AAAATACTATCTGGGCTGCAATG 57.220 39.130 0.50 0.00 0.00 2.82
282 283 5.387279 CCGCAGTACATATCAAACGTTTTT 58.613 37.500 11.66 4.62 0.00 1.94
283 284 4.142773 CCCGCAGTACATATCAAACGTTTT 60.143 41.667 11.66 0.00 0.00 2.43
284 285 3.372822 CCCGCAGTACATATCAAACGTTT 59.627 43.478 7.96 7.96 0.00 3.60
285 286 2.933906 CCCGCAGTACATATCAAACGTT 59.066 45.455 0.00 0.00 0.00 3.99
286 287 2.093869 ACCCGCAGTACATATCAAACGT 60.094 45.455 0.00 0.00 0.00 3.99
287 288 2.546778 ACCCGCAGTACATATCAAACG 58.453 47.619 0.00 0.00 0.00 3.60
288 289 4.957759 AAACCCGCAGTACATATCAAAC 57.042 40.909 0.00 0.00 0.00 2.93
289 290 8.911918 ATATTAAACCCGCAGTACATATCAAA 57.088 30.769 0.00 0.00 0.00 2.69
290 291 8.151596 TGATATTAAACCCGCAGTACATATCAA 58.848 33.333 0.00 0.00 33.00 2.57
291 292 7.672240 TGATATTAAACCCGCAGTACATATCA 58.328 34.615 0.00 0.00 33.25 2.15
292 293 8.033038 TCTGATATTAAACCCGCAGTACATATC 58.967 37.037 0.00 0.00 0.00 1.63
293 294 7.903145 TCTGATATTAAACCCGCAGTACATAT 58.097 34.615 0.00 0.00 0.00 1.78
294 295 7.292713 TCTGATATTAAACCCGCAGTACATA 57.707 36.000 0.00 0.00 0.00 2.29
295 296 6.169557 TCTGATATTAAACCCGCAGTACAT 57.830 37.500 0.00 0.00 0.00 2.29
296 297 5.601583 TCTGATATTAAACCCGCAGTACA 57.398 39.130 0.00 0.00 0.00 2.90
297 298 6.913873 TTTCTGATATTAAACCCGCAGTAC 57.086 37.500 0.00 0.00 0.00 2.73
298 299 9.431887 GATATTTCTGATATTAAACCCGCAGTA 57.568 33.333 0.00 0.00 0.00 2.74
299 300 7.936847 TGATATTTCTGATATTAAACCCGCAGT 59.063 33.333 0.00 0.00 0.00 4.40
300 301 8.322906 TGATATTTCTGATATTAAACCCGCAG 57.677 34.615 0.00 0.00 0.00 5.18
301 302 7.390440 CCTGATATTTCTGATATTAAACCCGCA 59.610 37.037 0.00 0.00 0.00 5.69
302 303 7.606456 TCCTGATATTTCTGATATTAAACCCGC 59.394 37.037 0.00 0.00 0.00 6.13
303 304 9.155975 CTCCTGATATTTCTGATATTAAACCCG 57.844 37.037 0.00 0.00 0.00 5.28
304 305 9.454859 CCTCCTGATATTTCTGATATTAAACCC 57.545 37.037 0.00 0.00 0.00 4.11
313 314 8.772250 TGTAGAAAACCTCCTGATATTTCTGAT 58.228 33.333 8.81 0.00 39.80 2.90
314 315 8.146053 TGTAGAAAACCTCCTGATATTTCTGA 57.854 34.615 8.81 0.00 39.80 3.27
315 316 8.792830 TTGTAGAAAACCTCCTGATATTTCTG 57.207 34.615 8.81 0.00 39.80 3.02
316 317 9.807921 TTTTGTAGAAAACCTCCTGATATTTCT 57.192 29.630 0.00 0.00 41.67 2.52
320 321 9.343539 GCTATTTTGTAGAAAACCTCCTGATAT 57.656 33.333 0.00 0.00 33.86 1.63
321 322 8.325787 TGCTATTTTGTAGAAAACCTCCTGATA 58.674 33.333 0.00 0.00 33.86 2.15
322 323 7.175104 TGCTATTTTGTAGAAAACCTCCTGAT 58.825 34.615 0.00 0.00 33.86 2.90
323 324 6.539173 TGCTATTTTGTAGAAAACCTCCTGA 58.461 36.000 0.00 0.00 33.86 3.86
324 325 6.817765 TGCTATTTTGTAGAAAACCTCCTG 57.182 37.500 0.00 0.00 33.86 3.86
325 326 7.121315 GTCATGCTATTTTGTAGAAAACCTCCT 59.879 37.037 0.00 0.00 33.86 3.69
326 327 7.251281 GTCATGCTATTTTGTAGAAAACCTCC 58.749 38.462 0.00 0.00 33.86 4.30
327 328 6.961554 CGTCATGCTATTTTGTAGAAAACCTC 59.038 38.462 0.00 0.00 33.86 3.85
328 329 6.128007 CCGTCATGCTATTTTGTAGAAAACCT 60.128 38.462 0.00 0.00 33.86 3.50
329 330 6.027749 CCGTCATGCTATTTTGTAGAAAACC 58.972 40.000 0.00 0.00 33.86 3.27
330 331 6.741358 GTCCGTCATGCTATTTTGTAGAAAAC 59.259 38.462 0.00 0.00 33.86 2.43
331 332 6.653320 AGTCCGTCATGCTATTTTGTAGAAAA 59.347 34.615 0.00 0.00 35.52 2.29
332 333 6.170506 AGTCCGTCATGCTATTTTGTAGAAA 58.829 36.000 0.00 0.00 0.00 2.52
333 334 5.730550 AGTCCGTCATGCTATTTTGTAGAA 58.269 37.500 0.00 0.00 0.00 2.10
334 335 5.339008 AGTCCGTCATGCTATTTTGTAGA 57.661 39.130 0.00 0.00 0.00 2.59
335 336 6.978659 TCTTAGTCCGTCATGCTATTTTGTAG 59.021 38.462 0.00 0.00 0.00 2.74
336 337 6.869695 TCTTAGTCCGTCATGCTATTTTGTA 58.130 36.000 0.00 0.00 0.00 2.41
337 338 5.730550 TCTTAGTCCGTCATGCTATTTTGT 58.269 37.500 0.00 0.00 0.00 2.83
338 339 6.662414 TTCTTAGTCCGTCATGCTATTTTG 57.338 37.500 0.00 0.00 0.00 2.44
339 340 7.441458 GGTATTCTTAGTCCGTCATGCTATTTT 59.559 37.037 0.00 0.00 0.00 1.82
340 341 6.929606 GGTATTCTTAGTCCGTCATGCTATTT 59.070 38.462 0.00 0.00 0.00 1.40
341 342 6.267928 AGGTATTCTTAGTCCGTCATGCTATT 59.732 38.462 0.00 0.00 0.00 1.73
342 343 5.775701 AGGTATTCTTAGTCCGTCATGCTAT 59.224 40.000 0.00 0.00 0.00 2.97
343 344 5.138276 AGGTATTCTTAGTCCGTCATGCTA 58.862 41.667 0.00 0.00 0.00 3.49
344 345 3.961408 AGGTATTCTTAGTCCGTCATGCT 59.039 43.478 0.00 0.00 0.00 3.79
345 346 4.323553 AGGTATTCTTAGTCCGTCATGC 57.676 45.455 0.00 0.00 0.00 4.06
346 347 8.361139 AGAAATAGGTATTCTTAGTCCGTCATG 58.639 37.037 0.00 0.00 33.41 3.07
347 348 8.480133 AGAAATAGGTATTCTTAGTCCGTCAT 57.520 34.615 0.00 0.00 33.41 3.06
348 349 7.893124 AGAAATAGGTATTCTTAGTCCGTCA 57.107 36.000 0.00 0.00 33.41 4.35
349 350 9.597170 AAAAGAAATAGGTATTCTTAGTCCGTC 57.403 33.333 2.29 0.00 44.22 4.79
421 422 9.552114 GCTCATTGAATAGCATATGTCAATAAC 57.448 33.333 15.20 7.52 38.37 1.89
422 423 9.511272 AGCTCATTGAATAGCATATGTCAATAA 57.489 29.630 15.20 4.83 38.37 1.40
423 424 9.511272 AAGCTCATTGAATAGCATATGTCAATA 57.489 29.630 15.20 7.07 38.37 1.90
424 425 7.997773 AGCTCATTGAATAGCATATGTCAAT 57.002 32.000 11.55 11.55 40.47 2.57
425 426 7.812690 AAGCTCATTGAATAGCATATGTCAA 57.187 32.000 4.29 6.75 41.32 3.18
426 427 8.152898 ACTAAGCTCATTGAATAGCATATGTCA 58.847 33.333 4.29 0.00 41.32 3.58
427 428 8.545229 ACTAAGCTCATTGAATAGCATATGTC 57.455 34.615 4.29 0.00 41.32 3.06
428 429 8.152898 TGACTAAGCTCATTGAATAGCATATGT 58.847 33.333 4.29 0.00 41.32 2.29
429 430 8.543862 TGACTAAGCTCATTGAATAGCATATG 57.456 34.615 0.00 0.00 41.32 1.78
430 431 9.565090 TTTGACTAAGCTCATTGAATAGCATAT 57.435 29.630 8.55 0.36 41.32 1.78
431 432 8.962884 TTTGACTAAGCTCATTGAATAGCATA 57.037 30.769 8.55 2.35 41.32 3.14
432 433 7.870509 TTTGACTAAGCTCATTGAATAGCAT 57.129 32.000 8.55 1.51 41.32 3.79
433 434 7.870509 ATTTGACTAAGCTCATTGAATAGCA 57.129 32.000 8.55 0.00 41.32 3.49
434 435 9.265901 TCTATTTGACTAAGCTCATTGAATAGC 57.734 33.333 0.00 0.00 39.08 2.97
475 476 9.687210 CACAGAGGCAATACGTATATAAGTTTA 57.313 33.333 8.83 0.00 0.00 2.01
476 477 8.418662 TCACAGAGGCAATACGTATATAAGTTT 58.581 33.333 8.83 0.00 0.00 2.66
477 478 7.948357 TCACAGAGGCAATACGTATATAAGTT 58.052 34.615 8.83 0.00 0.00 2.66
478 479 7.520451 TCACAGAGGCAATACGTATATAAGT 57.480 36.000 8.83 6.56 0.00 2.24
479 480 8.297426 TCTTCACAGAGGCAATACGTATATAAG 58.703 37.037 8.83 0.99 0.00 1.73
480 481 8.173542 TCTTCACAGAGGCAATACGTATATAA 57.826 34.615 8.83 0.00 0.00 0.98
481 482 7.754851 TCTTCACAGAGGCAATACGTATATA 57.245 36.000 8.83 0.00 0.00 0.86
482 483 6.650427 TCTTCACAGAGGCAATACGTATAT 57.350 37.500 8.83 0.00 0.00 0.86
483 484 6.459670 TTCTTCACAGAGGCAATACGTATA 57.540 37.500 8.83 0.00 0.00 1.47
484 485 5.339008 TTCTTCACAGAGGCAATACGTAT 57.661 39.130 1.14 1.14 0.00 3.06
485 486 4.794278 TTCTTCACAGAGGCAATACGTA 57.206 40.909 0.00 0.00 0.00 3.57
486 487 3.678056 TTCTTCACAGAGGCAATACGT 57.322 42.857 0.00 0.00 0.00 3.57
487 488 6.851222 ATATTTCTTCACAGAGGCAATACG 57.149 37.500 0.00 0.00 0.00 3.06
488 489 9.331282 AGTTATATTTCTTCACAGAGGCAATAC 57.669 33.333 0.00 0.00 0.00 1.89
489 490 9.905713 AAGTTATATTTCTTCACAGAGGCAATA 57.094 29.630 0.00 0.00 0.00 1.90
490 491 8.814038 AAGTTATATTTCTTCACAGAGGCAAT 57.186 30.769 0.00 0.00 0.00 3.56
491 492 9.905713 ATAAGTTATATTTCTTCACAGAGGCAA 57.094 29.630 0.00 0.00 0.00 4.52
492 493 9.905713 AATAAGTTATATTTCTTCACAGAGGCA 57.094 29.630 0.00 0.00 0.00 4.75
690 868 1.968493 GTTAGTGTGGGTGAGTGAGGA 59.032 52.381 0.00 0.00 0.00 3.71
799 982 1.558233 TTGTTTCGGGTTGGTTGGTT 58.442 45.000 0.00 0.00 0.00 3.67
800 983 1.558233 TTTGTTTCGGGTTGGTTGGT 58.442 45.000 0.00 0.00 0.00 3.67
801 984 2.545731 CTTTTGTTTCGGGTTGGTTGG 58.454 47.619 0.00 0.00 0.00 3.77
802 985 1.930503 GCTTTTGTTTCGGGTTGGTTG 59.069 47.619 0.00 0.00 0.00 3.77
921 1109 2.266376 GATTCGGCCTCAAAACGGGC 62.266 60.000 0.00 0.00 46.89 6.13
922 1110 1.654023 GGATTCGGCCTCAAAACGGG 61.654 60.000 0.00 0.00 0.00 5.28
1070 1269 1.861542 CGGGCTCCAATTTCGCAACA 61.862 55.000 0.00 0.00 0.00 3.33
1077 1276 3.134127 GCTCGCGGGCTCCAATTT 61.134 61.111 26.87 0.00 0.00 1.82
1173 1373 3.257393 AGTCGAAAGCACATTAGAGCTG 58.743 45.455 0.00 0.00 40.96 4.24
1188 1388 4.537135 AGGTAATCAGCTTGAAGTCGAA 57.463 40.909 0.00 0.00 0.00 3.71
1190 1390 5.390991 GGAAAAGGTAATCAGCTTGAAGTCG 60.391 44.000 0.00 0.00 41.59 4.18
1196 1396 2.760650 GGGGGAAAAGGTAATCAGCTTG 59.239 50.000 0.00 0.00 41.59 4.01
1289 1494 0.598680 ATAGCTGATGAACTCGCCGC 60.599 55.000 0.00 0.00 0.00 6.53
1352 1562 5.354234 CACTAACCAAAATTCGAGCACCTAT 59.646 40.000 0.00 0.00 0.00 2.57
1353 1563 4.693566 CACTAACCAAAATTCGAGCACCTA 59.306 41.667 0.00 0.00 0.00 3.08
1354 1564 3.502211 CACTAACCAAAATTCGAGCACCT 59.498 43.478 0.00 0.00 0.00 4.00
1386 1596 2.290514 TGAGCTCAGGAAAATCTGGGTG 60.291 50.000 13.74 0.00 37.55 4.61
1525 1742 1.148157 CTGACGGCATAGCGAACTGG 61.148 60.000 0.00 0.00 0.00 4.00
1559 1776 8.166706 ACGAGACACACGACAAAAATAATAATC 58.833 33.333 0.00 0.00 34.70 1.75
1560 1777 8.025243 ACGAGACACACGACAAAAATAATAAT 57.975 30.769 0.00 0.00 34.70 1.28
1563 1780 5.917541 ACGAGACACACGACAAAAATAAT 57.082 34.783 0.00 0.00 34.70 1.28
1564 1781 5.521010 AGAACGAGACACACGACAAAAATAA 59.479 36.000 0.00 0.00 34.70 1.40
1565 1782 5.045215 AGAACGAGACACACGACAAAAATA 58.955 37.500 0.00 0.00 34.70 1.40
1566 1783 3.869246 AGAACGAGACACACGACAAAAAT 59.131 39.130 0.00 0.00 34.70 1.82
1567 1784 3.061563 CAGAACGAGACACACGACAAAAA 59.938 43.478 0.00 0.00 34.70 1.94
1568 1785 2.601314 CAGAACGAGACACACGACAAAA 59.399 45.455 0.00 0.00 34.70 2.44
1572 1789 1.836383 AACAGAACGAGACACACGAC 58.164 50.000 0.00 0.00 34.70 4.34
1574 1791 2.858344 AGAAAACAGAACGAGACACACG 59.142 45.455 0.00 0.00 0.00 4.49
1575 1792 3.863424 TGAGAAAACAGAACGAGACACAC 59.137 43.478 0.00 0.00 0.00 3.82
1576 1793 4.118093 TGAGAAAACAGAACGAGACACA 57.882 40.909 0.00 0.00 0.00 3.72
1617 1834 5.068198 ACATGATCAACAACAGCTGAAAACT 59.932 36.000 23.35 0.00 0.00 2.66
1625 1842 5.090757 CACATGTACATGATCAACAACAGC 58.909 41.667 36.36 0.00 41.20 4.40
1673 1890 2.697431 TTTCGCAGCACCATGTAAAC 57.303 45.000 0.00 0.00 0.00 2.01
1713 1930 2.583024 TCCATTTGATCACCACTGCA 57.417 45.000 0.00 0.00 0.00 4.41
1761 1978 2.397597 TCATCAGATGAATCCGGTGGA 58.602 47.619 10.93 0.00 36.11 4.02
1897 2114 4.999311 CACTGACATCAAAATCTCCACAGA 59.001 41.667 0.00 0.00 0.00 3.41
1901 2118 6.320926 TCAAAACACTGACATCAAAATCTCCA 59.679 34.615 0.00 0.00 0.00 3.86
2194 2411 3.565902 GGGAGTTAGCATAATGAACCTGC 59.434 47.826 0.00 0.00 36.15 4.85
2369 2586 2.761071 GCAGCAGCAACTAGAGACC 58.239 57.895 0.00 0.00 41.58 3.85
2574 2791 4.478304 ACATGATGGTCAGGTGGCAACA 62.478 50.000 4.84 0.00 40.17 3.33
2655 2872 7.914871 CGGATCATGCTTTGTCATTATGTTTAA 59.085 33.333 0.00 0.00 0.00 1.52
2838 3055 6.481976 TGCAGGGTAAATAACAAGATGATACG 59.518 38.462 0.00 0.00 0.00 3.06
3001 3219 8.713708 TTAGGAAAGGGTTATCAAATCACAAA 57.286 30.769 0.00 0.00 0.00 2.83
3221 3439 5.663106 TCCTGCACTACTTTCCTCAATAGAT 59.337 40.000 0.00 0.00 0.00 1.98
3265 3483 6.152323 ACATTTCTTATGTGCTCTGCTTGAAT 59.848 34.615 0.00 0.00 0.00 2.57
3815 4158 4.397064 AAAACCAAAAACAAACAGTGCG 57.603 36.364 0.00 0.00 0.00 5.34
3854 4198 8.186821 ACTGAGTTTTTGTCTCTCTTCAATTTG 58.813 33.333 0.00 0.00 33.59 2.32
3914 4258 5.055144 TGCTATCATGTTCTCAGCATTCTC 58.945 41.667 0.00 0.00 37.32 2.87
4024 4368 5.236282 AGGCTTGATATCATGTTCTCATCG 58.764 41.667 17.26 0.00 31.15 3.84
4322 4666 9.845740 AAATTCTTTAACTTTGGTGGCTAATTT 57.154 25.926 0.00 0.00 0.00 1.82
4361 4705 8.024146 TCTTCGATTTTCATGTTTGATCGTAA 57.976 30.769 16.62 11.58 34.84 3.18
4515 4859 8.335356 CGATACAGAAGAGTGAGAAAACAAAAA 58.665 33.333 0.00 0.00 0.00 1.94
4566 4910 6.535150 GTCACTTTTGATCGACCTTGATGATA 59.465 38.462 0.00 0.00 33.11 2.15
4582 4926 7.697352 TTGAAAAGCATACATGTCACTTTTG 57.303 32.000 25.75 9.84 39.84 2.44
4705 5052 5.964758 TGGAGCCTGCACAAATTTAAATAG 58.035 37.500 0.01 0.25 0.00 1.73
5320 5697 1.726791 GTCAACCACACTATCAGCACG 59.273 52.381 0.00 0.00 0.00 5.34
5403 5780 6.884295 CACCCCAATCTTTCTTTGATGTACTA 59.116 38.462 0.00 0.00 0.00 1.82
5557 5935 1.933853 AGGATATCGTTTCTGCGCAAC 59.066 47.619 13.05 6.02 0.00 4.17
6106 6554 7.318141 CAAAAATCACATCACCTAAAGCAGAT 58.682 34.615 0.00 0.00 0.00 2.90
6470 6925 6.219473 CAGCTCAAGACAAGTTAGAGAAAGA 58.781 40.000 0.00 0.00 0.00 2.52
6473 6928 4.588951 TCCAGCTCAAGACAAGTTAGAGAA 59.411 41.667 0.00 0.00 0.00 2.87
6512 6967 7.095187 CCCTACTAAAACAGTTCTTAAGTGCAG 60.095 40.741 1.63 0.00 38.80 4.41
6513 6968 6.708949 CCCTACTAAAACAGTTCTTAAGTGCA 59.291 38.462 1.63 0.00 38.80 4.57
6520 6975 7.715686 CACTCTTTCCCTACTAAAACAGTTCTT 59.284 37.037 0.00 0.00 38.80 2.52
6521 6976 7.147532 ACACTCTTTCCCTACTAAAACAGTTCT 60.148 37.037 0.00 0.00 38.80 3.01
6522 6977 6.990939 ACACTCTTTCCCTACTAAAACAGTTC 59.009 38.462 0.00 0.00 38.80 3.01
6535 7127 8.002459 TCCTTTTATTTTACACACTCTTTCCCT 58.998 33.333 0.00 0.00 0.00 4.20
6536 7128 8.173542 TCCTTTTATTTTACACACTCTTTCCC 57.826 34.615 0.00 0.00 0.00 3.97
6637 7238 4.894784 TCCAACCTGTGATTAGAAGTGAC 58.105 43.478 0.00 0.00 0.00 3.67
6764 7416 7.713073 ACTCCTGCTATTTTACTGCTAATTCTC 59.287 37.037 0.00 0.00 0.00 2.87
6928 7658 6.824958 TGGAGTGGCCTTTATCTAGTTAAT 57.175 37.500 3.32 0.00 37.63 1.40
6942 7672 0.465460 TCGGCATAATTGGAGTGGCC 60.465 55.000 0.00 0.00 38.04 5.36
7004 7734 9.696917 CTTTCTATAATTTCCAAAAGTTGCAGT 57.303 29.630 0.00 0.00 0.00 4.40
7005 7735 9.912634 TCTTTCTATAATTTCCAAAAGTTGCAG 57.087 29.630 0.00 0.00 0.00 4.41
7042 7777 6.349363 GGTCCTATGGAAAGTTGACAATTCAC 60.349 42.308 4.40 0.00 31.38 3.18
7054 7789 8.148351 TCGTTTTATCTATGGTCCTATGGAAAG 58.852 37.037 0.00 0.00 31.38 2.62
7092 7827 6.558009 TGAACCATACGTATCTAACAGTGAC 58.442 40.000 4.74 0.00 0.00 3.67
7167 8050 4.503741 AATTAACATCAACTGCAAGCGT 57.496 36.364 0.00 0.00 37.60 5.07
7228 8112 7.013846 ACCTAATAAAGCACAAACAGCAACTTA 59.986 33.333 0.00 0.00 0.00 2.24
7229 8113 6.183360 ACCTAATAAAGCACAAACAGCAACTT 60.183 34.615 0.00 0.00 0.00 2.66
7230 8114 5.301805 ACCTAATAAAGCACAAACAGCAACT 59.698 36.000 0.00 0.00 0.00 3.16
7314 8205 4.076394 TGGGGGTTTATCTTTGTCTTTCG 58.924 43.478 0.00 0.00 0.00 3.46
7331 8222 0.178992 TCAACAGCTGAACTTGGGGG 60.179 55.000 23.35 0.00 0.00 5.40
7344 8240 3.796504 GCTTGAACCATGGTTGTCAACAG 60.797 47.826 34.47 20.95 38.60 3.16
7414 8310 5.544176 AGGGTCTGATAGTTGTCTCTTTTGA 59.456 40.000 0.00 0.00 0.00 2.69
7658 8561 8.296799 TGAAAGAAACAATTGATGATTTTCGG 57.703 30.769 13.59 0.00 32.23 4.30
7759 8673 5.045869 AGCACTACCAAATTAGTAAGCCTGA 60.046 40.000 0.00 0.00 30.76 3.86
7877 8791 2.614057 ACTTGGAGTCTTCAAAACAGCG 59.386 45.455 0.00 0.00 0.00 5.18
7880 8794 5.189928 TGCTTACTTGGAGTCTTCAAAACA 58.810 37.500 0.00 0.00 0.00 2.83
7906 8820 5.531287 TCTTTGAGGTGCTAAAAAGAAGTCC 59.469 40.000 0.00 0.00 36.10 3.85
7916 8830 6.889198 AGTAGCAATATCTTTGAGGTGCTAA 58.111 36.000 4.86 0.00 43.88 3.09
7936 8850 8.988064 TCTGAAAGTTTATTGAGCACTAGTAG 57.012 34.615 0.00 0.00 33.76 2.57
8202 9143 1.665161 CGCCTCGTCGAGTTACAGTTT 60.665 52.381 20.37 0.00 0.00 2.66
8203 9144 0.109873 CGCCTCGTCGAGTTACAGTT 60.110 55.000 20.37 0.00 0.00 3.16
8220 9161 3.365969 CCAACTATTTCCACCTTTCACGC 60.366 47.826 0.00 0.00 0.00 5.34
8223 9164 3.501385 CCCCCAACTATTTCCACCTTTCA 60.501 47.826 0.00 0.00 0.00 2.69
8244 9185 6.041751 ACAGTACATTTATCCTACAGCTACCC 59.958 42.308 0.00 0.00 0.00 3.69
8275 9216 7.336427 AGCAATTTGTTTTTCACATTTCTCCAA 59.664 29.630 0.00 0.00 34.43 3.53
8321 9262 6.657117 TCGTCAGAATGGAAAAATGGAACATA 59.343 34.615 0.00 0.00 39.73 2.29
8329 9274 3.684788 CGTCCTCGTCAGAATGGAAAAAT 59.315 43.478 0.00 0.00 36.16 1.82
8331 9276 2.611971 CCGTCCTCGTCAGAATGGAAAA 60.612 50.000 0.00 0.00 36.16 2.29
8411 9357 4.253685 CTCGTCACCACAGACCAAATATT 58.746 43.478 0.00 0.00 35.07 1.28
8412 9358 3.369471 CCTCGTCACCACAGACCAAATAT 60.369 47.826 0.00 0.00 35.07 1.28
8578 9547 6.211584 AGCTCTCAGAGTGGTAATTTCTTGTA 59.788 38.462 2.93 0.00 31.39 2.41
8651 9688 3.577649 TTCAGAGCAGTCGTCTTTAGG 57.422 47.619 0.00 0.00 0.00 2.69
8660 9697 7.543756 ACTCTAGAAGTAATTTCAGAGCAGTC 58.456 38.462 12.13 0.00 40.67 3.51
8726 9903 7.815068 GCAAGTCTTTCTGTTCTTACATCTCTA 59.185 37.037 0.00 0.00 32.86 2.43
8816 10007 9.674208 CGCAATACAATTTTCATGTTACATTTC 57.326 29.630 0.00 0.00 32.27 2.17
8817 10008 8.655092 CCGCAATACAATTTTCATGTTACATTT 58.345 29.630 0.00 0.00 32.27 2.32
8818 10009 7.816995 ACCGCAATACAATTTTCATGTTACATT 59.183 29.630 0.00 0.00 32.27 2.71
8819 10010 7.275341 CACCGCAATACAATTTTCATGTTACAT 59.725 33.333 0.00 0.00 32.27 2.29
8820 10011 6.584184 CACCGCAATACAATTTTCATGTTACA 59.416 34.615 0.00 0.00 32.27 2.41
8821 10012 6.804295 TCACCGCAATACAATTTTCATGTTAC 59.196 34.615 0.00 0.00 32.27 2.50
8822 10013 6.914259 TCACCGCAATACAATTTTCATGTTA 58.086 32.000 0.00 0.00 32.27 2.41
8823 10014 5.777802 TCACCGCAATACAATTTTCATGTT 58.222 33.333 0.00 0.00 32.27 2.71
8824 10015 5.384063 TCACCGCAATACAATTTTCATGT 57.616 34.783 0.00 0.00 34.81 3.21
8825 10016 4.266029 GCTCACCGCAATACAATTTTCATG 59.734 41.667 0.00 0.00 38.92 3.07
8826 10017 4.423732 GCTCACCGCAATACAATTTTCAT 58.576 39.130 0.00 0.00 38.92 2.57
8827 10018 3.832276 GCTCACCGCAATACAATTTTCA 58.168 40.909 0.00 0.00 38.92 2.69
8849 10041 0.537188 AGGTCGCTTGTTCGATCCAT 59.463 50.000 0.00 0.00 40.24 3.41
8861 10053 2.165437 GACTGAAGATCTGAAGGTCGCT 59.835 50.000 0.00 0.00 0.00 4.93
8947 10139 9.941325 AATCAGCAATGTTCCTATATTCTAGAG 57.059 33.333 0.00 0.00 0.00 2.43
8957 10149 7.003482 TGCCATATTAATCAGCAATGTTCCTA 58.997 34.615 4.90 0.00 0.00 2.94
8985 10177 2.163818 TTACACGGTTGGAAGCAGAG 57.836 50.000 0.00 0.00 0.00 3.35
8989 10181 0.878416 TGCATTACACGGTTGGAAGC 59.122 50.000 0.00 0.00 0.00 3.86
9047 10246 3.961477 TGGCAACGCATGTGTATTATC 57.039 42.857 13.23 2.19 42.51 1.75
9064 10263 6.326375 TCAAACATTATTAATTGTCGGTGGC 58.674 36.000 0.00 0.00 0.00 5.01
9089 10288 0.314418 CGCGTTGTTCGTTCGTTTCA 60.314 50.000 0.00 0.00 42.13 2.69
9099 10298 3.733024 TGGATTGTTATCGCGTTGTTC 57.267 42.857 5.77 0.00 0.00 3.18
9101 10300 4.695217 AATTGGATTGTTATCGCGTTGT 57.305 36.364 5.77 0.00 0.00 3.32
9102 10301 6.388259 AAAAATTGGATTGTTATCGCGTTG 57.612 33.333 5.77 0.00 0.00 4.10
9139 10338 4.601406 AAGGTTGCCCCATTCTACATAA 57.399 40.909 0.00 0.00 34.66 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.