Multiple sequence alignment - TraesCS1D01G342100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G342100 chr1D 100.000 5068 0 0 1 5068 431830513 431825446 0.000000e+00 9359.0
1 TraesCS1D01G342100 chr1D 91.089 202 14 1 1800 1997 491900768 491900969 2.330000e-68 270.0
2 TraesCS1D01G342100 chr1D 84.536 97 0 1 1687 1783 491900694 491900775 1.170000e-11 82.4
3 TraesCS1D01G342100 chr1A 92.443 4195 193 46 274 4374 530261179 530257015 0.000000e+00 5877.0
4 TraesCS1D01G342100 chr1A 81.328 482 52 20 4613 5064 530256455 530255982 1.740000e-94 357.0
5 TraesCS1D01G342100 chr1B 95.602 3297 106 18 406 3672 583211491 583208204 0.000000e+00 5249.0
6 TraesCS1D01G342100 chr1B 90.545 973 46 13 1147 2107 684276895 684277833 0.000000e+00 1245.0
7 TraesCS1D01G342100 chr1B 90.966 642 31 15 3749 4374 583208140 583207510 0.000000e+00 839.0
8 TraesCS1D01G342100 chr1B 88.034 234 18 8 4833 5058 583207308 583207077 8.360000e-68 268.0
9 TraesCS1D01G342100 chr3D 88.305 1180 128 8 984 2160 379539630 379538458 0.000000e+00 1406.0
10 TraesCS1D01G342100 chr3D 78.858 823 112 27 984 1804 150824740 150823978 2.720000e-137 499.0
11 TraesCS1D01G342100 chr3D 81.534 352 63 2 2622 2972 379537651 379537301 6.420000e-74 289.0
12 TraesCS1D01G342100 chr3A 88.488 1164 125 7 1000 2160 503755146 503753989 0.000000e+00 1399.0
13 TraesCS1D01G342100 chr3A 79.881 1009 139 49 3084 4061 503752765 503751790 0.000000e+00 680.0
14 TraesCS1D01G342100 chr3A 82.670 352 59 2 2622 2972 503753192 503752842 1.370000e-80 311.0
15 TraesCS1D01G342100 chr3B 87.918 1167 132 7 997 2160 495154026 495152866 0.000000e+00 1365.0
16 TraesCS1D01G342100 chr4B 76.989 1986 404 35 1016 2961 667726395 667728367 0.000000e+00 1086.0
17 TraesCS1D01G342100 chr4B 83.333 240 37 3 2728 2966 92534617 92534380 8.540000e-53 219.0
18 TraesCS1D01G342100 chr5A 91.496 341 26 1 1388 1728 53333101 53333438 2.760000e-127 466.0
19 TraesCS1D01G342100 chr5A 92.664 259 15 1 1800 2054 53333462 53333720 2.230000e-98 370.0
20 TraesCS1D01G342100 chr5A 94.393 107 5 1 2051 2156 53360687 53360793 4.060000e-36 163.0
21 TraesCS1D01G342100 chr4D 79.118 340 65 6 2636 2972 62736955 62736619 3.950000e-56 230.0
22 TraesCS1D01G342100 chr4A 78.857 350 66 8 2627 2972 534169108 534169453 3.950000e-56 230.0
23 TraesCS1D01G342100 chr4A 81.148 244 42 4 2732 2973 534171675 534171916 5.180000e-45 193.0
24 TraesCS1D01G342100 chr4A 87.586 145 16 2 2809 2952 534212227 534212370 3.140000e-37 167.0
25 TraesCS1D01G342100 chr6D 98.000 50 1 0 1 50 101545654 101545703 2.510000e-13 87.9
26 TraesCS1D01G342100 chr6D 92.982 57 3 1 1 57 339065041 339065096 1.170000e-11 82.4
27 TraesCS1D01G342100 chr6D 95.918 49 2 0 1 49 387066625 387066577 4.210000e-11 80.5
28 TraesCS1D01G342100 chr5D 97.959 49 1 0 1 49 103706369 103706321 9.040000e-13 86.1
29 TraesCS1D01G342100 chr5D 97.959 49 1 0 1 49 293024032 293024080 9.040000e-13 86.1
30 TraesCS1D01G342100 chr5D 97.917 48 1 0 3 50 244494362 244494409 3.250000e-12 84.2
31 TraesCS1D01G342100 chr2D 97.959 49 1 0 1 49 620887769 620887721 9.040000e-13 86.1
32 TraesCS1D01G342100 chr7D 94.545 55 2 1 1 55 438269527 438269580 3.250000e-12 84.2
33 TraesCS1D01G342100 chr7D 92.982 57 3 1 1 57 116381412 116381467 1.170000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G342100 chr1D 431825446 431830513 5067 True 9359.000000 9359 100.000000 1 5068 1 chr1D.!!$R1 5067
1 TraesCS1D01G342100 chr1A 530255982 530261179 5197 True 3117.000000 5877 86.885500 274 5064 2 chr1A.!!$R1 4790
2 TraesCS1D01G342100 chr1B 583207077 583211491 4414 True 2118.666667 5249 91.534000 406 5058 3 chr1B.!!$R1 4652
3 TraesCS1D01G342100 chr1B 684276895 684277833 938 False 1245.000000 1245 90.545000 1147 2107 1 chr1B.!!$F1 960
4 TraesCS1D01G342100 chr3D 379537301 379539630 2329 True 847.500000 1406 84.919500 984 2972 2 chr3D.!!$R2 1988
5 TraesCS1D01G342100 chr3D 150823978 150824740 762 True 499.000000 499 78.858000 984 1804 1 chr3D.!!$R1 820
6 TraesCS1D01G342100 chr3A 503751790 503755146 3356 True 796.666667 1399 83.679667 1000 4061 3 chr3A.!!$R1 3061
7 TraesCS1D01G342100 chr3B 495152866 495154026 1160 True 1365.000000 1365 87.918000 997 2160 1 chr3B.!!$R1 1163
8 TraesCS1D01G342100 chr4B 667726395 667728367 1972 False 1086.000000 1086 76.989000 1016 2961 1 chr4B.!!$F1 1945
9 TraesCS1D01G342100 chr5A 53333101 53333720 619 False 418.000000 466 92.080000 1388 2054 2 chr5A.!!$F2 666
10 TraesCS1D01G342100 chr4A 534169108 534171916 2808 False 211.500000 230 80.002500 2627 2973 2 chr4A.!!$F2 346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.033504 TTGAAGCTGTCGTGAGTCCC 59.966 55.000 0.00 0.0 0.00 4.46 F
180 181 0.033504 GAAGCTGTCGTGAGTCCCAA 59.966 55.000 0.00 0.0 0.00 4.12 F
535 561 0.246635 AAACCTCGTGACTGGATCGG 59.753 55.000 0.00 0.0 0.00 4.18 F
651 678 0.822532 ACCGCCTAGATACAGACCCG 60.823 60.000 0.00 0.0 0.00 5.28 F
1287 1376 1.895707 GCTCATCAAGGCCATCCGG 60.896 63.158 5.01 0.0 37.47 5.14 F
3700 4191 0.036164 TCCCCGTCACCATGTTTCTG 59.964 55.000 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1697 1.657181 GTTGTTCTTTGTGCGGCGG 60.657 57.895 9.78 0.00 0.00 6.13 R
3116 3594 1.533033 TCCTCACCTGCTCCGTCAA 60.533 57.895 0.00 0.00 0.00 3.18 R
3439 3921 2.606961 CCTGCACGCACACACGAAT 61.607 57.895 0.00 0.00 36.70 3.34 R
3450 3932 4.007644 TGCCTCCTCACCTGCACG 62.008 66.667 0.00 0.00 0.00 5.34 R
3736 4227 0.163788 CACCTGCACGTCGTTGATTC 59.836 55.000 0.00 0.00 0.00 2.52 R
4534 6665 0.100682 ACCATCTCAACCGTCGATCG 59.899 55.000 9.36 9.36 39.52 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.290324 GCTTGGACTGCGTCTCAGA 59.710 57.895 0.00 0.00 45.72 3.27
36 37 0.319900 GCTTGGACTGCGTCTCAGAA 60.320 55.000 0.00 0.00 45.72 3.02
37 38 1.707632 CTTGGACTGCGTCTCAGAAG 58.292 55.000 0.00 0.00 45.72 2.85
38 39 0.318441 TTGGACTGCGTCTCAGAAGG 59.682 55.000 0.00 0.00 45.72 3.46
39 40 0.827925 TGGACTGCGTCTCAGAAGGT 60.828 55.000 0.00 0.00 45.72 3.50
40 41 0.318762 GGACTGCGTCTCAGAAGGTT 59.681 55.000 0.00 0.00 45.72 3.50
41 42 1.270358 GGACTGCGTCTCAGAAGGTTT 60.270 52.381 0.00 0.00 45.72 3.27
42 43 2.029290 GGACTGCGTCTCAGAAGGTTTA 60.029 50.000 0.00 0.00 45.72 2.01
43 44 3.368531 GGACTGCGTCTCAGAAGGTTTAT 60.369 47.826 0.00 0.00 45.72 1.40
44 45 4.246458 GACTGCGTCTCAGAAGGTTTATT 58.754 43.478 0.00 0.00 45.72 1.40
45 46 4.246458 ACTGCGTCTCAGAAGGTTTATTC 58.754 43.478 0.00 0.00 45.72 1.75
46 47 3.250744 TGCGTCTCAGAAGGTTTATTCG 58.749 45.455 0.00 0.00 34.27 3.34
47 48 2.029365 GCGTCTCAGAAGGTTTATTCGC 59.971 50.000 0.00 0.00 34.27 4.70
48 49 3.250744 CGTCTCAGAAGGTTTATTCGCA 58.749 45.455 0.00 0.00 34.27 5.10
49 50 3.678072 CGTCTCAGAAGGTTTATTCGCAA 59.322 43.478 0.00 0.00 34.27 4.85
50 51 4.330074 CGTCTCAGAAGGTTTATTCGCAAT 59.670 41.667 0.00 0.00 34.27 3.56
51 52 5.163854 CGTCTCAGAAGGTTTATTCGCAATT 60.164 40.000 0.00 0.00 34.27 2.32
52 53 6.612306 GTCTCAGAAGGTTTATTCGCAATTT 58.388 36.000 0.00 0.00 34.27 1.82
53 54 6.524586 GTCTCAGAAGGTTTATTCGCAATTTG 59.475 38.462 0.00 0.00 34.27 2.32
54 55 5.708948 TCAGAAGGTTTATTCGCAATTTGG 58.291 37.500 0.00 0.00 34.27 3.28
55 56 5.242838 TCAGAAGGTTTATTCGCAATTTGGT 59.757 36.000 0.00 0.00 34.27 3.67
56 57 5.925969 CAGAAGGTTTATTCGCAATTTGGTT 59.074 36.000 0.00 0.00 34.27 3.67
57 58 6.423604 CAGAAGGTTTATTCGCAATTTGGTTT 59.576 34.615 0.00 0.00 34.27 3.27
58 59 7.596995 CAGAAGGTTTATTCGCAATTTGGTTTA 59.403 33.333 0.00 0.00 34.27 2.01
59 60 8.145122 AGAAGGTTTATTCGCAATTTGGTTTAA 58.855 29.630 0.00 0.00 34.27 1.52
60 61 8.664211 AAGGTTTATTCGCAATTTGGTTTAAA 57.336 26.923 0.00 0.00 0.00 1.52
61 62 8.664211 AGGTTTATTCGCAATTTGGTTTAAAA 57.336 26.923 0.00 0.00 0.00 1.52
62 63 9.278978 AGGTTTATTCGCAATTTGGTTTAAAAT 57.721 25.926 0.00 0.00 0.00 1.82
63 64 9.323963 GGTTTATTCGCAATTTGGTTTAAAATG 57.676 29.630 0.00 0.00 33.29 2.32
64 65 9.871299 GTTTATTCGCAATTTGGTTTAAAATGT 57.129 25.926 0.00 0.00 32.83 2.71
68 69 7.054855 TCGCAATTTGGTTTAAAATGTATGC 57.945 32.000 0.00 0.00 32.83 3.14
69 70 6.646653 TCGCAATTTGGTTTAAAATGTATGCA 59.353 30.769 0.00 0.00 33.42 3.96
70 71 6.954852 CGCAATTTGGTTTAAAATGTATGCAG 59.045 34.615 0.00 3.92 33.42 4.41
71 72 7.242783 GCAATTTGGTTTAAAATGTATGCAGG 58.757 34.615 0.00 0.00 33.76 4.85
72 73 7.118971 GCAATTTGGTTTAAAATGTATGCAGGA 59.881 33.333 0.00 0.00 33.76 3.86
73 74 8.997323 CAATTTGGTTTAAAATGTATGCAGGAA 58.003 29.630 0.00 0.00 30.21 3.36
74 75 8.776376 ATTTGGTTTAAAATGTATGCAGGAAG 57.224 30.769 0.00 0.00 0.00 3.46
75 76 5.719173 TGGTTTAAAATGTATGCAGGAAGC 58.281 37.500 0.00 0.00 45.96 3.86
76 77 5.480073 TGGTTTAAAATGTATGCAGGAAGCT 59.520 36.000 0.00 0.00 45.94 3.74
77 78 6.014669 TGGTTTAAAATGTATGCAGGAAGCTT 60.015 34.615 0.00 0.00 45.94 3.74
78 79 6.873605 GGTTTAAAATGTATGCAGGAAGCTTT 59.126 34.615 0.00 0.00 45.94 3.51
79 80 7.148590 GGTTTAAAATGTATGCAGGAAGCTTTG 60.149 37.037 0.00 0.00 45.94 2.77
80 81 4.460948 AAATGTATGCAGGAAGCTTTGG 57.539 40.909 0.00 0.00 45.94 3.28
81 82 2.877097 TGTATGCAGGAAGCTTTGGA 57.123 45.000 0.00 0.00 45.94 3.53
82 83 3.370840 TGTATGCAGGAAGCTTTGGAT 57.629 42.857 9.68 9.68 45.94 3.41
83 84 3.018856 TGTATGCAGGAAGCTTTGGATG 58.981 45.455 13.61 6.20 45.94 3.51
84 85 1.481871 ATGCAGGAAGCTTTGGATGG 58.518 50.000 0.00 0.00 45.94 3.51
85 86 0.112995 TGCAGGAAGCTTTGGATGGT 59.887 50.000 0.00 0.00 45.94 3.55
86 87 0.813821 GCAGGAAGCTTTGGATGGTC 59.186 55.000 0.00 0.00 41.15 4.02
87 88 1.089920 CAGGAAGCTTTGGATGGTCG 58.910 55.000 0.00 0.00 0.00 4.79
88 89 0.035056 AGGAAGCTTTGGATGGTCGG 60.035 55.000 0.00 0.00 0.00 4.79
89 90 1.657751 GGAAGCTTTGGATGGTCGGC 61.658 60.000 0.00 0.00 0.00 5.54
90 91 0.678048 GAAGCTTTGGATGGTCGGCT 60.678 55.000 0.00 0.00 0.00 5.52
91 92 0.251341 AAGCTTTGGATGGTCGGCTT 60.251 50.000 0.00 0.00 35.57 4.35
92 93 0.678048 AGCTTTGGATGGTCGGCTTC 60.678 55.000 0.00 0.00 0.00 3.86
93 94 0.678048 GCTTTGGATGGTCGGCTTCT 60.678 55.000 0.00 0.00 0.00 2.85
94 95 1.406887 GCTTTGGATGGTCGGCTTCTA 60.407 52.381 0.00 0.00 0.00 2.10
95 96 2.280628 CTTTGGATGGTCGGCTTCTAC 58.719 52.381 0.00 0.00 0.00 2.59
96 97 1.271856 TTGGATGGTCGGCTTCTACA 58.728 50.000 0.00 0.00 0.00 2.74
97 98 1.496060 TGGATGGTCGGCTTCTACAT 58.504 50.000 0.00 0.00 0.00 2.29
98 99 1.412710 TGGATGGTCGGCTTCTACATC 59.587 52.381 0.00 0.00 37.73 3.06
99 100 1.412710 GGATGGTCGGCTTCTACATCA 59.587 52.381 5.73 0.00 39.63 3.07
100 101 2.037772 GGATGGTCGGCTTCTACATCAT 59.962 50.000 5.73 0.00 39.63 2.45
101 102 3.495100 GGATGGTCGGCTTCTACATCATT 60.495 47.826 5.73 0.00 39.63 2.57
102 103 2.905075 TGGTCGGCTTCTACATCATTG 58.095 47.619 0.00 0.00 0.00 2.82
103 104 1.599542 GGTCGGCTTCTACATCATTGC 59.400 52.381 0.00 0.00 0.00 3.56
104 105 1.599542 GTCGGCTTCTACATCATTGCC 59.400 52.381 0.00 0.00 37.24 4.52
105 106 1.486310 TCGGCTTCTACATCATTGCCT 59.514 47.619 0.00 0.00 38.33 4.75
106 107 1.600957 CGGCTTCTACATCATTGCCTG 59.399 52.381 0.00 0.00 38.33 4.85
107 108 2.648059 GGCTTCTACATCATTGCCTGT 58.352 47.619 0.00 0.00 37.58 4.00
108 109 2.357009 GGCTTCTACATCATTGCCTGTG 59.643 50.000 0.00 0.00 37.58 3.66
109 110 2.357009 GCTTCTACATCATTGCCTGTGG 59.643 50.000 2.96 0.79 0.00 4.17
110 111 3.877559 CTTCTACATCATTGCCTGTGGA 58.122 45.455 2.59 2.59 31.95 4.02
111 112 3.266510 TCTACATCATTGCCTGTGGAC 57.733 47.619 2.59 0.00 29.25 4.02
112 113 2.840038 TCTACATCATTGCCTGTGGACT 59.160 45.455 2.59 0.00 29.25 3.85
113 114 1.830279 ACATCATTGCCTGTGGACTG 58.170 50.000 0.00 0.00 0.00 3.51
114 115 1.100510 CATCATTGCCTGTGGACTGG 58.899 55.000 0.00 0.00 37.93 4.00
115 116 0.700564 ATCATTGCCTGTGGACTGGT 59.299 50.000 4.79 0.00 37.30 4.00
116 117 0.036732 TCATTGCCTGTGGACTGGTC 59.963 55.000 4.79 0.00 37.30 4.02
127 128 3.713650 ACTGGTCCCATCAGTCCG 58.286 61.111 0.00 0.00 41.10 4.79
128 129 1.229209 ACTGGTCCCATCAGTCCGT 60.229 57.895 0.00 0.00 41.10 4.69
129 130 1.219124 CTGGTCCCATCAGTCCGTG 59.781 63.158 0.00 0.00 0.00 4.94
130 131 1.229051 TGGTCCCATCAGTCCGTGA 60.229 57.895 0.00 0.00 40.38 4.35
131 132 0.834261 TGGTCCCATCAGTCCGTGAA 60.834 55.000 0.00 0.00 39.19 3.18
132 133 0.391263 GGTCCCATCAGTCCGTGAAC 60.391 60.000 0.00 0.00 39.19 3.18
133 134 0.736325 GTCCCATCAGTCCGTGAACG 60.736 60.000 0.00 0.00 39.19 3.95
134 135 0.896479 TCCCATCAGTCCGTGAACGA 60.896 55.000 4.03 0.00 43.02 3.85
135 136 0.037697 CCCATCAGTCCGTGAACGAA 60.038 55.000 4.03 0.00 43.02 3.85
136 137 1.405526 CCCATCAGTCCGTGAACGAAT 60.406 52.381 4.03 0.00 43.02 3.34
137 138 1.660607 CCATCAGTCCGTGAACGAATG 59.339 52.381 4.03 0.97 43.02 2.67
138 139 2.337583 CATCAGTCCGTGAACGAATGT 58.662 47.619 4.03 0.00 43.02 2.71
139 140 1.778334 TCAGTCCGTGAACGAATGTG 58.222 50.000 4.03 0.00 43.02 3.21
140 141 1.067974 TCAGTCCGTGAACGAATGTGT 59.932 47.619 4.03 0.00 43.02 3.72
141 142 1.864711 CAGTCCGTGAACGAATGTGTT 59.135 47.619 4.03 0.00 43.02 3.32
142 143 2.096909 CAGTCCGTGAACGAATGTGTTC 60.097 50.000 4.03 3.91 46.63 3.18
157 158 6.683974 AATGTGTTCGATTTGAAGGATAGG 57.316 37.500 0.00 0.00 37.23 2.57
158 159 4.513442 TGTGTTCGATTTGAAGGATAGGG 58.487 43.478 0.00 0.00 37.23 3.53
159 160 4.019681 TGTGTTCGATTTGAAGGATAGGGT 60.020 41.667 0.00 0.00 37.23 4.34
160 161 4.941873 GTGTTCGATTTGAAGGATAGGGTT 59.058 41.667 0.00 0.00 37.23 4.11
161 162 4.941263 TGTTCGATTTGAAGGATAGGGTTG 59.059 41.667 0.00 0.00 37.23 3.77
162 163 5.183228 GTTCGATTTGAAGGATAGGGTTGA 58.817 41.667 0.00 0.00 37.23 3.18
163 164 5.429681 TCGATTTGAAGGATAGGGTTGAA 57.570 39.130 0.00 0.00 0.00 2.69
164 165 5.428253 TCGATTTGAAGGATAGGGTTGAAG 58.572 41.667 0.00 0.00 0.00 3.02
165 166 4.035675 CGATTTGAAGGATAGGGTTGAAGC 59.964 45.833 0.00 0.00 0.00 3.86
166 167 4.657814 TTTGAAGGATAGGGTTGAAGCT 57.342 40.909 0.00 0.00 0.00 3.74
167 168 3.634397 TGAAGGATAGGGTTGAAGCTG 57.366 47.619 0.00 0.00 0.00 4.24
168 169 2.912956 TGAAGGATAGGGTTGAAGCTGT 59.087 45.455 0.00 0.00 0.00 4.40
169 170 3.055094 TGAAGGATAGGGTTGAAGCTGTC 60.055 47.826 0.00 0.00 0.00 3.51
170 171 1.482593 AGGATAGGGTTGAAGCTGTCG 59.517 52.381 0.00 0.00 0.00 4.35
171 172 1.207329 GGATAGGGTTGAAGCTGTCGT 59.793 52.381 0.00 0.00 0.00 4.34
172 173 2.271800 GATAGGGTTGAAGCTGTCGTG 58.728 52.381 0.00 0.00 0.00 4.35
173 174 1.334160 TAGGGTTGAAGCTGTCGTGA 58.666 50.000 0.00 0.00 0.00 4.35
174 175 0.034059 AGGGTTGAAGCTGTCGTGAG 59.966 55.000 0.00 0.00 0.00 3.51
175 176 0.249911 GGGTTGAAGCTGTCGTGAGT 60.250 55.000 0.00 0.00 0.00 3.41
176 177 1.140816 GGTTGAAGCTGTCGTGAGTC 58.859 55.000 0.00 0.00 0.00 3.36
177 178 1.140816 GTTGAAGCTGTCGTGAGTCC 58.859 55.000 0.00 0.00 0.00 3.85
178 179 0.033504 TTGAAGCTGTCGTGAGTCCC 59.966 55.000 0.00 0.00 0.00 4.46
179 180 1.112916 TGAAGCTGTCGTGAGTCCCA 61.113 55.000 0.00 0.00 0.00 4.37
180 181 0.033504 GAAGCTGTCGTGAGTCCCAA 59.966 55.000 0.00 0.00 0.00 4.12
181 182 0.249911 AAGCTGTCGTGAGTCCCAAC 60.250 55.000 0.00 0.00 0.00 3.77
182 183 2.022129 GCTGTCGTGAGTCCCAACG 61.022 63.158 0.00 0.00 0.00 4.10
183 184 2.022129 CTGTCGTGAGTCCCAACGC 61.022 63.158 0.00 0.00 0.00 4.84
184 185 2.028484 GTCGTGAGTCCCAACGCA 59.972 61.111 0.00 0.00 32.36 5.24
185 186 1.374252 GTCGTGAGTCCCAACGCAT 60.374 57.895 0.00 0.00 37.53 4.73
186 187 0.949105 GTCGTGAGTCCCAACGCATT 60.949 55.000 0.00 0.00 37.53 3.56
187 188 0.948623 TCGTGAGTCCCAACGCATTG 60.949 55.000 0.00 0.00 37.53 2.82
188 189 0.948623 CGTGAGTCCCAACGCATTGA 60.949 55.000 0.00 0.00 37.53 2.57
189 190 0.798776 GTGAGTCCCAACGCATTGAG 59.201 55.000 0.00 0.00 37.53 3.02
190 191 0.396435 TGAGTCCCAACGCATTGAGT 59.604 50.000 0.00 0.00 38.15 3.41
191 192 1.202758 TGAGTCCCAACGCATTGAGTT 60.203 47.619 0.00 0.00 38.15 3.01
192 193 2.037902 TGAGTCCCAACGCATTGAGTTA 59.962 45.455 5.43 0.00 38.15 2.24
193 194 3.071479 GAGTCCCAACGCATTGAGTTAA 58.929 45.455 5.43 0.00 38.15 2.01
194 195 3.482436 AGTCCCAACGCATTGAGTTAAA 58.518 40.909 5.43 0.00 38.15 1.52
195 196 3.502211 AGTCCCAACGCATTGAGTTAAAG 59.498 43.478 5.43 0.00 38.15 1.85
196 197 3.252458 GTCCCAACGCATTGAGTTAAAGT 59.748 43.478 5.43 0.00 38.15 2.66
197 198 4.453136 GTCCCAACGCATTGAGTTAAAGTA 59.547 41.667 5.43 0.00 38.15 2.24
198 199 5.123344 GTCCCAACGCATTGAGTTAAAGTAT 59.877 40.000 5.43 0.00 38.15 2.12
199 200 6.314400 GTCCCAACGCATTGAGTTAAAGTATA 59.686 38.462 5.43 0.00 38.15 1.47
200 201 6.879993 TCCCAACGCATTGAGTTAAAGTATAA 59.120 34.615 5.43 0.00 38.15 0.98
201 202 6.964934 CCCAACGCATTGAGTTAAAGTATAAC 59.035 38.462 5.43 0.00 38.15 1.89
202 203 6.964934 CCAACGCATTGAGTTAAAGTATAACC 59.035 38.462 5.43 0.00 38.15 2.85
203 204 7.361371 CCAACGCATTGAGTTAAAGTATAACCA 60.361 37.037 5.43 0.00 38.15 3.67
204 205 7.859325 ACGCATTGAGTTAAAGTATAACCAT 57.141 32.000 0.00 0.00 0.00 3.55
205 206 7.693952 ACGCATTGAGTTAAAGTATAACCATG 58.306 34.615 0.00 0.00 0.00 3.66
206 207 7.335924 ACGCATTGAGTTAAAGTATAACCATGT 59.664 33.333 0.00 0.00 0.00 3.21
207 208 7.850982 CGCATTGAGTTAAAGTATAACCATGTC 59.149 37.037 0.00 0.00 0.00 3.06
208 209 8.893727 GCATTGAGTTAAAGTATAACCATGTCT 58.106 33.333 0.00 0.00 0.00 3.41
240 241 8.962884 AGTAGAATATTAATGCATGTCACACA 57.037 30.769 0.00 0.00 0.00 3.72
241 242 9.394767 AGTAGAATATTAATGCATGTCACACAA 57.605 29.630 0.00 0.00 0.00 3.33
244 245 9.926158 AGAATATTAATGCATGTCACACAAAAA 57.074 25.926 0.00 0.00 0.00 1.94
347 350 9.225201 CATGATTAATATGACCGAAAACACAAG 57.775 33.333 0.00 0.00 0.00 3.16
351 354 0.462225 TGACCGAAAACACAAGCGGA 60.462 50.000 7.16 0.00 46.29 5.54
352 355 0.658897 GACCGAAAACACAAGCGGAA 59.341 50.000 7.16 0.00 46.29 4.30
353 356 0.661020 ACCGAAAACACAAGCGGAAG 59.339 50.000 7.16 0.00 46.29 3.46
364 367 3.054878 ACAAGCGGAAGTACTGTAAACG 58.945 45.455 0.00 0.00 0.00 3.60
366 369 3.863142 AGCGGAAGTACTGTAAACGAT 57.137 42.857 0.00 0.00 0.00 3.73
371 374 4.430908 GGAAGTACTGTAAACGATGAGGG 58.569 47.826 0.00 0.00 0.00 4.30
376 380 2.764572 ACTGTAAACGATGAGGGGGTAG 59.235 50.000 0.00 0.00 0.00 3.18
377 381 1.483415 TGTAAACGATGAGGGGGTAGC 59.517 52.381 0.00 0.00 0.00 3.58
380 384 0.617820 AACGATGAGGGGGTAGCACT 60.618 55.000 0.00 0.00 0.00 4.40
381 385 0.617820 ACGATGAGGGGGTAGCACTT 60.618 55.000 0.00 0.00 0.00 3.16
387 391 3.039011 TGAGGGGGTAGCACTTCTTATC 58.961 50.000 7.86 0.00 0.00 1.75
389 393 1.070289 GGGGGTAGCACTTCTTATCCG 59.930 57.143 0.00 0.00 0.00 4.18
399 403 2.567615 ACTTCTTATCCGAACAGCCACT 59.432 45.455 0.00 0.00 0.00 4.00
416 433 0.249322 ACTAGTGAAGCGTGCGTGTT 60.249 50.000 0.00 0.00 0.00 3.32
441 458 1.210155 GCATTGACACTTGGACCGC 59.790 57.895 0.00 0.00 0.00 5.68
463 480 1.463674 GACCCGGAGCATTTTGACAT 58.536 50.000 0.73 0.00 0.00 3.06
512 538 4.767255 CCAGGCACCGGAGTCAGC 62.767 72.222 9.46 3.54 0.00 4.26
535 561 0.246635 AAACCTCGTGACTGGATCGG 59.753 55.000 0.00 0.00 0.00 4.18
627 654 2.370445 CCTAGCCCCACAGGTCAGG 61.370 68.421 0.00 0.00 38.26 3.86
651 678 0.822532 ACCGCCTAGATACAGACCCG 60.823 60.000 0.00 0.00 0.00 5.28
950 993 4.041444 CCCAATCAATCTTCCAACCCAAAA 59.959 41.667 0.00 0.00 0.00 2.44
954 997 6.940430 ATCAATCTTCCAACCCAAAATCTT 57.060 33.333 0.00 0.00 0.00 2.40
955 998 6.100404 TCAATCTTCCAACCCAAAATCTTG 57.900 37.500 0.00 0.00 0.00 3.02
956 999 5.602145 TCAATCTTCCAACCCAAAATCTTGT 59.398 36.000 0.00 0.00 0.00 3.16
958 1001 4.541705 TCTTCCAACCCAAAATCTTGTCA 58.458 39.130 0.00 0.00 0.00 3.58
977 1021 3.799420 GTCAGTTCGATCCATTGTAGAGC 59.201 47.826 0.00 0.00 0.00 4.09
1134 1181 2.185867 GCGGACAAGTCGGGCATA 59.814 61.111 9.38 0.00 32.34 3.14
1287 1376 1.895707 GCTCATCAAGGCCATCCGG 60.896 63.158 5.01 0.00 37.47 5.14
1596 1697 2.583593 GTCGTGCGCATCCTCTCC 60.584 66.667 15.91 0.00 0.00 3.71
2685 3160 2.048127 AACGACAAGGAGCGGCTC 60.048 61.111 21.57 21.57 0.00 4.70
3077 3555 9.252962 GCTGATTTGGGATTATAAATTGTTCTG 57.747 33.333 0.00 0.00 0.00 3.02
3116 3594 4.640690 ACGAGGAGGGTGGGCAGT 62.641 66.667 0.00 0.00 0.00 4.40
3379 3857 5.230942 GTCATGCAGGAGGTATGTATGTAC 58.769 45.833 0.00 0.00 40.41 2.90
3394 3872 5.597806 TGTATGTACGGATCAGTTCAATCC 58.402 41.667 9.16 2.20 39.51 3.01
3402 3880 4.145052 GGATCAGTTCAATCCCCATTACC 58.855 47.826 0.00 0.00 37.33 2.85
3407 3885 3.202151 AGTTCAATCCCCATTACCGATGT 59.798 43.478 0.00 0.00 33.71 3.06
3410 3888 3.971305 TCAATCCCCATTACCGATGTACT 59.029 43.478 0.00 0.00 33.71 2.73
3411 3889 4.039973 TCAATCCCCATTACCGATGTACTC 59.960 45.833 0.00 0.00 33.71 2.59
3412 3890 2.322658 TCCCCATTACCGATGTACTCC 58.677 52.381 0.00 0.00 33.71 3.85
3450 3932 2.245096 GATGCTGAAATTCGTGTGTGC 58.755 47.619 0.00 0.00 0.00 4.57
3671 4162 3.395669 GGTACGCGACAGCAATCC 58.604 61.111 15.93 0.00 45.49 3.01
3673 4164 1.421410 GGTACGCGACAGCAATCCAG 61.421 60.000 15.93 0.00 45.49 3.86
3675 4166 3.869272 CGCGACAGCAATCCAGCC 61.869 66.667 0.00 0.00 45.49 4.85
3677 4168 2.825836 CGACAGCAATCCAGCCCC 60.826 66.667 0.00 0.00 34.23 5.80
3683 4174 2.190578 CAATCCAGCCCCGTCTCC 59.809 66.667 0.00 0.00 0.00 3.71
3694 4185 2.184322 CGTCTCCCCGTCACCATG 59.816 66.667 0.00 0.00 0.00 3.66
3696 4187 1.677552 GTCTCCCCGTCACCATGTT 59.322 57.895 0.00 0.00 0.00 2.71
3697 4188 0.036306 GTCTCCCCGTCACCATGTTT 59.964 55.000 0.00 0.00 0.00 2.83
3699 4190 0.324943 CTCCCCGTCACCATGTTTCT 59.675 55.000 0.00 0.00 0.00 2.52
3700 4191 0.036164 TCCCCGTCACCATGTTTCTG 59.964 55.000 0.00 0.00 0.00 3.02
3701 4192 0.036164 CCCCGTCACCATGTTTCTGA 59.964 55.000 0.00 0.00 0.00 3.27
3702 4193 1.544537 CCCCGTCACCATGTTTCTGAA 60.545 52.381 0.00 0.00 0.00 3.02
3703 4194 1.535462 CCCGTCACCATGTTTCTGAAC 59.465 52.381 0.00 0.00 36.29 3.18
3712 4203 2.031037 TGTTTCTGAACATTTCGCGC 57.969 45.000 0.00 0.00 40.71 6.86
3713 4204 1.327507 GTTTCTGAACATTTCGCGCC 58.672 50.000 0.00 0.00 35.79 6.53
3717 4208 1.135717 TCTGAACATTTCGCGCCATTG 60.136 47.619 0.00 0.00 0.00 2.82
3718 4209 0.732196 TGAACATTTCGCGCCATTGC 60.732 50.000 0.00 0.00 0.00 3.56
3719 4210 0.456653 GAACATTTCGCGCCATTGCT 60.457 50.000 0.00 0.00 34.43 3.91
3721 4212 0.808125 ACATTTCGCGCCATTGCTAA 59.192 45.000 0.00 0.00 34.43 3.09
3722 4213 1.191096 CATTTCGCGCCATTGCTAAC 58.809 50.000 0.00 0.00 34.43 2.34
3723 4214 1.094785 ATTTCGCGCCATTGCTAACT 58.905 45.000 0.00 0.00 34.43 2.24
3724 4215 0.446222 TTTCGCGCCATTGCTAACTC 59.554 50.000 0.00 0.00 34.43 3.01
3725 4216 0.391130 TTCGCGCCATTGCTAACTCT 60.391 50.000 0.00 0.00 34.43 3.24
3726 4217 1.083806 TCGCGCCATTGCTAACTCTG 61.084 55.000 0.00 0.00 34.43 3.35
3727 4218 1.063166 GCGCCATTGCTAACTCTGC 59.937 57.895 0.00 0.00 34.43 4.26
3729 4220 1.089920 CGCCATTGCTAACTCTGCTT 58.910 50.000 0.00 0.00 34.43 3.91
3731 4222 2.476854 CGCCATTGCTAACTCTGCTTTC 60.477 50.000 0.00 0.00 34.43 2.62
3732 4223 2.476854 GCCATTGCTAACTCTGCTTTCG 60.477 50.000 0.00 0.00 33.53 3.46
3734 4225 3.189287 CCATTGCTAACTCTGCTTTCGTT 59.811 43.478 0.00 0.00 0.00 3.85
3735 4226 4.320494 CCATTGCTAACTCTGCTTTCGTTT 60.320 41.667 0.00 0.00 0.00 3.60
3736 4227 3.878086 TGCTAACTCTGCTTTCGTTTG 57.122 42.857 0.00 0.00 0.00 2.93
3737 4228 3.462982 TGCTAACTCTGCTTTCGTTTGA 58.537 40.909 0.00 0.00 0.00 2.69
3740 4231 5.082723 GCTAACTCTGCTTTCGTTTGAATC 58.917 41.667 0.00 0.00 33.20 2.52
3741 4232 5.334105 GCTAACTCTGCTTTCGTTTGAATCA 60.334 40.000 0.00 0.00 33.20 2.57
3746 4237 3.613563 TGCTTTCGTTTGAATCAACGAC 58.386 40.909 16.01 4.45 33.20 4.34
4160 6233 3.394874 CTGTGACGCGTGTGTCGG 61.395 66.667 20.70 5.19 41.87 4.79
4205 6282 6.675728 GCTTCGGGAATAATCTTCTGTGTTTC 60.676 42.308 0.00 0.00 0.00 2.78
4252 6329 5.591877 AGAAAAGAGTGTCTTGTGAATTGCT 59.408 36.000 0.00 0.00 36.71 3.91
4329 6409 7.229506 TCTCACCTATTATATCATCATCGCGAT 59.770 37.037 17.62 17.62 33.27 4.58
4340 6420 1.726248 TCATCGCGATAAATGCATCGG 59.274 47.619 23.22 5.30 46.20 4.18
4342 6422 0.599991 TCGCGATAAATGCATCGGCT 60.600 50.000 3.71 0.00 46.20 5.52
4388 6519 5.007136 ACAATAGCTATGAAGAAGAAAGCGC 59.993 40.000 7.09 0.00 38.23 5.92
4389 6520 3.258971 AGCTATGAAGAAGAAAGCGCT 57.741 42.857 2.64 2.64 38.23 5.92
4404 6535 3.325293 AGCGCTTCAGAGATGAAGAAA 57.675 42.857 19.41 0.00 45.93 2.52
4408 6539 4.153117 GCGCTTCAGAGATGAAGAAAAAGA 59.847 41.667 19.41 0.00 45.93 2.52
4413 6544 2.996621 AGAGATGAAGAAAAAGACGGCG 59.003 45.455 4.80 4.80 0.00 6.46
4437 6568 2.440817 GCCAGCGTACCCCCACTAT 61.441 63.158 0.00 0.00 0.00 2.12
4438 6569 1.746517 CCAGCGTACCCCCACTATC 59.253 63.158 0.00 0.00 0.00 2.08
4439 6570 0.759436 CCAGCGTACCCCCACTATCT 60.759 60.000 0.00 0.00 0.00 1.98
4440 6571 1.120530 CAGCGTACCCCCACTATCTT 58.879 55.000 0.00 0.00 0.00 2.40
4441 6572 2.313317 CAGCGTACCCCCACTATCTTA 58.687 52.381 0.00 0.00 0.00 2.10
4442 6573 2.296471 CAGCGTACCCCCACTATCTTAG 59.704 54.545 0.00 0.00 0.00 2.18
4443 6574 1.617357 GCGTACCCCCACTATCTTAGG 59.383 57.143 0.00 0.00 0.00 2.69
4444 6575 2.245582 CGTACCCCCACTATCTTAGGG 58.754 57.143 0.00 0.00 43.88 3.53
4448 6579 1.774856 CCCCCACTATCTTAGGGTTGG 59.225 57.143 0.00 0.00 41.16 3.77
4449 6580 2.488836 CCCCACTATCTTAGGGTTGGT 58.511 52.381 0.00 0.00 41.16 3.67
4450 6581 2.438392 CCCCACTATCTTAGGGTTGGTC 59.562 54.545 0.00 0.00 41.16 4.02
4452 6583 3.134804 CCCACTATCTTAGGGTTGGTCAG 59.865 52.174 0.00 0.00 37.81 3.51
4453 6584 4.030913 CCACTATCTTAGGGTTGGTCAGA 58.969 47.826 0.00 0.00 0.00 3.27
4454 6585 4.100189 CCACTATCTTAGGGTTGGTCAGAG 59.900 50.000 0.00 0.00 0.00 3.35
4455 6586 4.100189 CACTATCTTAGGGTTGGTCAGAGG 59.900 50.000 0.00 0.00 0.00 3.69
4456 6587 1.276622 TCTTAGGGTTGGTCAGAGGC 58.723 55.000 0.00 0.00 0.00 4.70
4457 6588 0.108138 CTTAGGGTTGGTCAGAGGCG 60.108 60.000 0.00 0.00 0.00 5.52
4458 6589 1.550130 TTAGGGTTGGTCAGAGGCGG 61.550 60.000 0.00 0.00 0.00 6.13
4459 6590 2.741878 TAGGGTTGGTCAGAGGCGGT 62.742 60.000 0.00 0.00 0.00 5.68
4460 6591 2.358737 GGTTGGTCAGAGGCGGTG 60.359 66.667 0.00 0.00 0.00 4.94
4484 6615 1.963338 GTTGCTGCTTCGCCAGAGT 60.963 57.895 0.00 0.00 34.77 3.24
4485 6616 1.227943 TTGCTGCTTCGCCAGAGTT 60.228 52.632 0.00 0.00 34.77 3.01
4486 6617 1.230635 TTGCTGCTTCGCCAGAGTTC 61.231 55.000 0.00 0.00 34.77 3.01
4487 6618 1.375268 GCTGCTTCGCCAGAGTTCT 60.375 57.895 0.00 0.00 34.77 3.01
4488 6619 0.952984 GCTGCTTCGCCAGAGTTCTT 60.953 55.000 0.00 0.00 34.77 2.52
4489 6620 1.517242 CTGCTTCGCCAGAGTTCTTT 58.483 50.000 0.00 0.00 34.77 2.52
4490 6621 1.876156 CTGCTTCGCCAGAGTTCTTTT 59.124 47.619 0.00 0.00 34.77 2.27
4491 6622 1.603802 TGCTTCGCCAGAGTTCTTTTG 59.396 47.619 0.00 0.00 0.00 2.44
4492 6623 1.068954 GCTTCGCCAGAGTTCTTTTGG 60.069 52.381 0.00 0.00 35.06 3.28
4493 6624 2.222027 CTTCGCCAGAGTTCTTTTGGT 58.778 47.619 6.31 0.00 34.43 3.67
4494 6625 1.593196 TCGCCAGAGTTCTTTTGGTG 58.407 50.000 9.83 9.83 42.44 4.17
4495 6626 0.593128 CGCCAGAGTTCTTTTGGTGG 59.407 55.000 8.81 0.00 38.51 4.61
4496 6627 1.692411 GCCAGAGTTCTTTTGGTGGT 58.308 50.000 0.00 0.00 34.43 4.16
4497 6628 1.609072 GCCAGAGTTCTTTTGGTGGTC 59.391 52.381 0.00 0.00 34.43 4.02
4499 6630 1.264288 CAGAGTTCTTTTGGTGGTCGC 59.736 52.381 0.00 0.00 0.00 5.19
4501 6632 1.164041 AGTTCTTTTGGTGGTCGCCG 61.164 55.000 0.00 0.00 0.00 6.46
4502 6633 1.894756 TTCTTTTGGTGGTCGCCGG 60.895 57.895 0.00 0.00 0.00 6.13
4503 6634 3.361977 CTTTTGGTGGTCGCCGGG 61.362 66.667 2.18 0.00 0.00 5.73
4508 6639 4.832608 GGTGGTCGCCGGGCTTAG 62.833 72.222 18.34 1.23 0.00 2.18
4510 6641 3.458163 TGGTCGCCGGGCTTAGAG 61.458 66.667 18.34 0.39 0.00 2.43
4511 6642 4.222847 GGTCGCCGGGCTTAGAGG 62.223 72.222 18.34 0.00 0.00 3.69
4512 6643 4.222847 GTCGCCGGGCTTAGAGGG 62.223 72.222 18.34 0.00 0.00 4.30
4515 6646 2.849646 GCCGGGCTTAGAGGGGAT 60.850 66.667 12.87 0.00 0.00 3.85
4516 6647 3.151906 CCGGGCTTAGAGGGGATG 58.848 66.667 0.00 0.00 0.00 3.51
4517 6648 2.520536 CCGGGCTTAGAGGGGATGG 61.521 68.421 0.00 0.00 0.00 3.51
4518 6649 2.839836 GGGCTTAGAGGGGATGGC 59.160 66.667 0.00 0.00 0.00 4.40
4519 6650 2.427753 GGCTTAGAGGGGATGGCG 59.572 66.667 0.00 0.00 0.00 5.69
4520 6651 2.444256 GGCTTAGAGGGGATGGCGT 61.444 63.158 0.00 0.00 0.00 5.68
4523 6654 2.666596 CTTAGAGGGGATGGCGTGGC 62.667 65.000 0.00 0.00 0.00 5.01
4552 6683 2.873367 CGATCGACGGTTGAGATGG 58.127 57.895 10.26 0.00 38.46 3.51
4554 6685 1.469251 CGATCGACGGTTGAGATGGTT 60.469 52.381 10.26 0.00 38.46 3.67
4555 6686 2.194271 GATCGACGGTTGAGATGGTTC 58.806 52.381 4.14 0.00 0.00 3.62
4556 6687 0.109458 TCGACGGTTGAGATGGTTCG 60.109 55.000 0.00 0.00 0.00 3.95
4560 6949 0.460284 CGGTTGAGATGGTTCGAGGG 60.460 60.000 0.00 0.00 0.00 4.30
4564 6953 0.687757 TGAGATGGTTCGAGGGAGGG 60.688 60.000 0.00 0.00 0.00 4.30
4566 6955 3.090532 ATGGTTCGAGGGAGGGCC 61.091 66.667 0.00 0.00 0.00 5.80
4591 6980 2.343758 GAGGCGGTCACTGAAGCA 59.656 61.111 9.24 0.00 0.00 3.91
4595 6984 2.456119 GCGGTCACTGAAGCATCGG 61.456 63.158 0.00 0.00 37.98 4.18
4596 6985 1.215382 CGGTCACTGAAGCATCGGA 59.785 57.895 4.46 0.00 35.77 4.55
4597 6986 0.803768 CGGTCACTGAAGCATCGGAG 60.804 60.000 4.46 0.00 35.77 4.63
4628 7039 1.067142 CACGGTGGATCGAGGAAGAAA 60.067 52.381 0.00 0.00 0.00 2.52
4631 7042 2.633488 GGTGGATCGAGGAAGAAAAGG 58.367 52.381 0.00 0.00 0.00 3.11
4642 7053 0.034089 AAGAAAAGGAGGGCGATGGG 60.034 55.000 0.00 0.00 0.00 4.00
4643 7054 1.453928 GAAAAGGAGGGCGATGGGG 60.454 63.158 0.00 0.00 0.00 4.96
4666 7078 3.492656 GGTTGAAGAAGGTTTTTCAGCCC 60.493 47.826 14.41 7.44 44.27 5.19
4667 7079 3.025322 TGAAGAAGGTTTTTCAGCCCA 57.975 42.857 0.00 0.00 0.00 5.36
4687 7100 1.868713 TGATTTGCATGGGATGGCTT 58.131 45.000 0.00 0.00 0.00 4.35
4741 7154 2.533266 GCAAATGACATACAGCCAAGC 58.467 47.619 0.00 0.00 0.00 4.01
4748 7161 1.285962 ACATACAGCCAAGCCCTGAAT 59.714 47.619 0.00 0.00 34.47 2.57
4761 7190 6.322201 CCAAGCCCTGAATTATGTATGAGTTT 59.678 38.462 0.00 0.00 0.00 2.66
4915 7351 5.183713 TCATTCAACACCAATTCCATCTGTC 59.816 40.000 0.00 0.00 0.00 3.51
4919 7355 2.283298 CACCAATTCCATCTGTCGAGG 58.717 52.381 0.00 0.00 0.00 4.63
4925 7361 3.735237 TTCCATCTGTCGAGGAATAGC 57.265 47.619 0.00 0.00 36.55 2.97
4931 7367 3.628008 TCTGTCGAGGAATAGCCACTAA 58.372 45.455 0.00 0.00 40.02 2.24
4932 7368 3.380637 TCTGTCGAGGAATAGCCACTAAC 59.619 47.826 0.00 0.00 40.02 2.34
4933 7369 3.093814 TGTCGAGGAATAGCCACTAACA 58.906 45.455 0.00 0.00 40.02 2.41
4960 7397 4.519540 ACCAACAATTAACAGGCATGTC 57.480 40.909 3.65 0.00 39.29 3.06
4967 7404 6.996509 ACAATTAACAGGCATGTCAAGAAAT 58.003 32.000 3.65 0.00 39.29 2.17
4972 7409 5.534207 ACAGGCATGTCAAGAAATTTTGA 57.466 34.783 0.00 0.00 32.99 2.69
4981 7418 7.475771 TGTCAAGAAATTTTGAAAATTCCCG 57.524 32.000 15.43 6.15 38.69 5.14
5000 7437 2.032681 AGGGAACTTGGTGCGAGC 59.967 61.111 0.00 0.00 37.44 5.03
5025 7468 7.625606 GCGCACCCTATATGTACCAAATAATTC 60.626 40.741 0.30 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.304559 CGAATAAACCTTCTGAGACGCAG 59.695 47.826 0.00 0.00 46.31 5.18
25 26 3.250744 CGAATAAACCTTCTGAGACGCA 58.749 45.455 0.00 0.00 0.00 5.24
26 27 2.029365 GCGAATAAACCTTCTGAGACGC 59.971 50.000 0.00 0.00 36.06 5.19
27 28 3.250744 TGCGAATAAACCTTCTGAGACG 58.749 45.455 0.00 0.00 0.00 4.18
28 29 5.803020 ATTGCGAATAAACCTTCTGAGAC 57.197 39.130 0.00 0.00 0.00 3.36
29 30 6.349280 CCAAATTGCGAATAAACCTTCTGAGA 60.349 38.462 0.00 0.00 0.00 3.27
30 31 5.801947 CCAAATTGCGAATAAACCTTCTGAG 59.198 40.000 0.00 0.00 0.00 3.35
31 32 5.242838 ACCAAATTGCGAATAAACCTTCTGA 59.757 36.000 0.00 0.00 0.00 3.27
32 33 5.469479 ACCAAATTGCGAATAAACCTTCTG 58.531 37.500 0.00 0.00 0.00 3.02
33 34 5.722021 ACCAAATTGCGAATAAACCTTCT 57.278 34.783 0.00 0.00 0.00 2.85
34 35 6.779115 AAACCAAATTGCGAATAAACCTTC 57.221 33.333 0.00 0.00 0.00 3.46
35 36 8.664211 TTTAAACCAAATTGCGAATAAACCTT 57.336 26.923 0.00 0.00 0.00 3.50
36 37 8.664211 TTTTAAACCAAATTGCGAATAAACCT 57.336 26.923 0.00 0.00 0.00 3.50
37 38 9.323963 CATTTTAAACCAAATTGCGAATAAACC 57.676 29.630 0.00 0.00 0.00 3.27
38 39 9.871299 ACATTTTAAACCAAATTGCGAATAAAC 57.129 25.926 0.00 0.00 32.93 2.01
42 43 8.174422 GCATACATTTTAAACCAAATTGCGAAT 58.826 29.630 0.00 0.00 32.93 3.34
43 44 7.171508 TGCATACATTTTAAACCAAATTGCGAA 59.828 29.630 0.00 0.00 33.12 4.70
44 45 6.646653 TGCATACATTTTAAACCAAATTGCGA 59.353 30.769 0.00 0.00 33.12 5.10
45 46 6.825584 TGCATACATTTTAAACCAAATTGCG 58.174 32.000 0.00 0.00 33.12 4.85
46 47 7.118971 TCCTGCATACATTTTAAACCAAATTGC 59.881 33.333 0.00 0.00 32.93 3.56
47 48 8.545229 TCCTGCATACATTTTAAACCAAATTG 57.455 30.769 0.00 0.00 34.88 2.32
48 49 9.218440 CTTCCTGCATACATTTTAAACCAAATT 57.782 29.630 0.00 0.00 0.00 1.82
49 50 7.334171 GCTTCCTGCATACATTTTAAACCAAAT 59.666 33.333 0.00 0.00 42.31 2.32
50 51 6.648725 GCTTCCTGCATACATTTTAAACCAAA 59.351 34.615 0.00 0.00 42.31 3.28
51 52 6.014669 AGCTTCCTGCATACATTTTAAACCAA 60.015 34.615 0.00 0.00 45.94 3.67
52 53 5.480073 AGCTTCCTGCATACATTTTAAACCA 59.520 36.000 0.00 0.00 45.94 3.67
53 54 5.965922 AGCTTCCTGCATACATTTTAAACC 58.034 37.500 0.00 0.00 45.94 3.27
54 55 7.148590 CCAAAGCTTCCTGCATACATTTTAAAC 60.149 37.037 0.00 0.00 45.94 2.01
55 56 6.873076 CCAAAGCTTCCTGCATACATTTTAAA 59.127 34.615 0.00 0.00 45.94 1.52
56 57 6.210385 TCCAAAGCTTCCTGCATACATTTTAA 59.790 34.615 0.00 0.00 45.94 1.52
57 58 5.714333 TCCAAAGCTTCCTGCATACATTTTA 59.286 36.000 0.00 0.00 45.94 1.52
58 59 4.527816 TCCAAAGCTTCCTGCATACATTTT 59.472 37.500 0.00 0.00 45.94 1.82
59 60 4.088634 TCCAAAGCTTCCTGCATACATTT 58.911 39.130 0.00 0.00 45.94 2.32
60 61 3.700538 TCCAAAGCTTCCTGCATACATT 58.299 40.909 0.00 0.00 45.94 2.71
61 62 3.370840 TCCAAAGCTTCCTGCATACAT 57.629 42.857 0.00 0.00 45.94 2.29
62 63 2.877097 TCCAAAGCTTCCTGCATACA 57.123 45.000 0.00 0.00 45.94 2.29
63 64 2.360165 CCATCCAAAGCTTCCTGCATAC 59.640 50.000 0.00 0.00 45.94 2.39
64 65 2.025037 ACCATCCAAAGCTTCCTGCATA 60.025 45.455 0.00 0.00 45.94 3.14
65 66 1.272872 ACCATCCAAAGCTTCCTGCAT 60.273 47.619 0.00 0.00 45.94 3.96
66 67 0.112995 ACCATCCAAAGCTTCCTGCA 59.887 50.000 0.00 0.00 45.94 4.41
67 68 0.813821 GACCATCCAAAGCTTCCTGC 59.186 55.000 0.00 0.00 43.29 4.85
68 69 1.089920 CGACCATCCAAAGCTTCCTG 58.910 55.000 0.00 0.00 0.00 3.86
69 70 0.035056 CCGACCATCCAAAGCTTCCT 60.035 55.000 0.00 0.00 0.00 3.36
70 71 1.657751 GCCGACCATCCAAAGCTTCC 61.658 60.000 0.00 0.00 0.00 3.46
71 72 0.678048 AGCCGACCATCCAAAGCTTC 60.678 55.000 0.00 0.00 0.00 3.86
72 73 0.251341 AAGCCGACCATCCAAAGCTT 60.251 50.000 0.00 0.00 35.82 3.74
73 74 0.678048 GAAGCCGACCATCCAAAGCT 60.678 55.000 0.00 0.00 0.00 3.74
74 75 0.678048 AGAAGCCGACCATCCAAAGC 60.678 55.000 0.00 0.00 0.00 3.51
75 76 2.280628 GTAGAAGCCGACCATCCAAAG 58.719 52.381 0.00 0.00 0.00 2.77
76 77 1.626321 TGTAGAAGCCGACCATCCAAA 59.374 47.619 0.00 0.00 0.00 3.28
77 78 1.271856 TGTAGAAGCCGACCATCCAA 58.728 50.000 0.00 0.00 0.00 3.53
78 79 1.412710 GATGTAGAAGCCGACCATCCA 59.587 52.381 0.00 0.00 0.00 3.41
79 80 1.412710 TGATGTAGAAGCCGACCATCC 59.587 52.381 0.00 0.00 0.00 3.51
80 81 2.890808 TGATGTAGAAGCCGACCATC 57.109 50.000 0.00 0.00 0.00 3.51
81 82 3.470709 CAATGATGTAGAAGCCGACCAT 58.529 45.455 0.00 0.00 0.00 3.55
82 83 2.905075 CAATGATGTAGAAGCCGACCA 58.095 47.619 0.00 0.00 0.00 4.02
83 84 1.599542 GCAATGATGTAGAAGCCGACC 59.400 52.381 0.00 0.00 0.00 4.79
84 85 1.599542 GGCAATGATGTAGAAGCCGAC 59.400 52.381 0.00 0.00 31.88 4.79
85 86 1.486310 AGGCAATGATGTAGAAGCCGA 59.514 47.619 0.00 0.00 46.34 5.54
86 87 1.600957 CAGGCAATGATGTAGAAGCCG 59.399 52.381 0.00 0.00 46.34 5.52
87 88 2.357009 CACAGGCAATGATGTAGAAGCC 59.643 50.000 0.00 0.00 42.31 4.35
88 89 2.357009 CCACAGGCAATGATGTAGAAGC 59.643 50.000 0.00 0.00 0.00 3.86
89 90 3.624861 GTCCACAGGCAATGATGTAGAAG 59.375 47.826 0.00 0.00 0.00 2.85
90 91 3.264193 AGTCCACAGGCAATGATGTAGAA 59.736 43.478 0.00 0.00 0.00 2.10
91 92 2.840038 AGTCCACAGGCAATGATGTAGA 59.160 45.455 0.00 0.00 0.00 2.59
92 93 2.941064 CAGTCCACAGGCAATGATGTAG 59.059 50.000 0.00 0.00 0.00 2.74
93 94 2.356022 CCAGTCCACAGGCAATGATGTA 60.356 50.000 0.00 0.00 0.00 2.29
94 95 1.615116 CCAGTCCACAGGCAATGATGT 60.615 52.381 0.00 0.00 0.00 3.06
95 96 1.100510 CCAGTCCACAGGCAATGATG 58.899 55.000 0.00 0.00 0.00 3.07
96 97 0.700564 ACCAGTCCACAGGCAATGAT 59.299 50.000 0.00 0.00 0.00 2.45
97 98 0.036732 GACCAGTCCACAGGCAATGA 59.963 55.000 0.00 0.00 0.00 2.57
98 99 2.559785 GACCAGTCCACAGGCAATG 58.440 57.895 0.00 0.00 0.00 2.82
110 111 1.229209 ACGGACTGATGGGACCAGT 60.229 57.895 0.00 0.00 46.51 4.00
111 112 1.219124 CACGGACTGATGGGACCAG 59.781 63.158 0.00 0.00 37.64 4.00
112 113 0.834261 TTCACGGACTGATGGGACCA 60.834 55.000 0.00 0.00 0.00 4.02
113 114 0.391263 GTTCACGGACTGATGGGACC 60.391 60.000 0.00 0.00 0.00 4.46
114 115 0.736325 CGTTCACGGACTGATGGGAC 60.736 60.000 0.00 0.00 35.37 4.46
115 116 0.896479 TCGTTCACGGACTGATGGGA 60.896 55.000 0.00 0.00 40.29 4.37
116 117 0.037697 TTCGTTCACGGACTGATGGG 60.038 55.000 0.00 0.00 40.29 4.00
117 118 1.660607 CATTCGTTCACGGACTGATGG 59.339 52.381 0.00 0.00 40.29 3.51
118 119 2.092681 CACATTCGTTCACGGACTGATG 59.907 50.000 0.00 0.56 40.29 3.07
119 120 2.288825 ACACATTCGTTCACGGACTGAT 60.289 45.455 0.00 0.00 40.29 2.90
120 121 1.067974 ACACATTCGTTCACGGACTGA 59.932 47.619 0.00 0.00 40.29 3.41
121 122 1.497991 ACACATTCGTTCACGGACTG 58.502 50.000 0.00 0.00 40.29 3.51
122 123 2.132762 GAACACATTCGTTCACGGACT 58.867 47.619 0.00 0.00 43.89 3.85
123 124 2.572173 GAACACATTCGTTCACGGAC 57.428 50.000 0.00 0.00 43.89 4.79
133 134 6.238484 CCCTATCCTTCAAATCGAACACATTC 60.238 42.308 0.00 0.00 0.00 2.67
134 135 5.590259 CCCTATCCTTCAAATCGAACACATT 59.410 40.000 0.00 0.00 0.00 2.71
135 136 5.126067 CCCTATCCTTCAAATCGAACACAT 58.874 41.667 0.00 0.00 0.00 3.21
136 137 4.019681 ACCCTATCCTTCAAATCGAACACA 60.020 41.667 0.00 0.00 0.00 3.72
137 138 4.514401 ACCCTATCCTTCAAATCGAACAC 58.486 43.478 0.00 0.00 0.00 3.32
138 139 4.837093 ACCCTATCCTTCAAATCGAACA 57.163 40.909 0.00 0.00 0.00 3.18
139 140 5.183228 TCAACCCTATCCTTCAAATCGAAC 58.817 41.667 0.00 0.00 0.00 3.95
140 141 5.429681 TCAACCCTATCCTTCAAATCGAA 57.570 39.130 0.00 0.00 0.00 3.71
141 142 5.428253 CTTCAACCCTATCCTTCAAATCGA 58.572 41.667 0.00 0.00 0.00 3.59
142 143 4.035675 GCTTCAACCCTATCCTTCAAATCG 59.964 45.833 0.00 0.00 0.00 3.34
143 144 5.067023 CAGCTTCAACCCTATCCTTCAAATC 59.933 44.000 0.00 0.00 0.00 2.17
144 145 4.952335 CAGCTTCAACCCTATCCTTCAAAT 59.048 41.667 0.00 0.00 0.00 2.32
145 146 4.202567 ACAGCTTCAACCCTATCCTTCAAA 60.203 41.667 0.00 0.00 0.00 2.69
146 147 3.330701 ACAGCTTCAACCCTATCCTTCAA 59.669 43.478 0.00 0.00 0.00 2.69
147 148 2.912956 ACAGCTTCAACCCTATCCTTCA 59.087 45.455 0.00 0.00 0.00 3.02
148 149 3.536570 GACAGCTTCAACCCTATCCTTC 58.463 50.000 0.00 0.00 0.00 3.46
149 150 2.093447 CGACAGCTTCAACCCTATCCTT 60.093 50.000 0.00 0.00 0.00 3.36
150 151 1.482593 CGACAGCTTCAACCCTATCCT 59.517 52.381 0.00 0.00 0.00 3.24
151 152 1.207329 ACGACAGCTTCAACCCTATCC 59.793 52.381 0.00 0.00 0.00 2.59
152 153 2.094182 TCACGACAGCTTCAACCCTATC 60.094 50.000 0.00 0.00 0.00 2.08
153 154 1.899814 TCACGACAGCTTCAACCCTAT 59.100 47.619 0.00 0.00 0.00 2.57
154 155 1.272490 CTCACGACAGCTTCAACCCTA 59.728 52.381 0.00 0.00 0.00 3.53
155 156 0.034059 CTCACGACAGCTTCAACCCT 59.966 55.000 0.00 0.00 0.00 4.34
156 157 0.249911 ACTCACGACAGCTTCAACCC 60.250 55.000 0.00 0.00 0.00 4.11
157 158 1.140816 GACTCACGACAGCTTCAACC 58.859 55.000 0.00 0.00 0.00 3.77
158 159 1.140816 GGACTCACGACAGCTTCAAC 58.859 55.000 0.00 0.00 0.00 3.18
159 160 0.033504 GGGACTCACGACAGCTTCAA 59.966 55.000 0.00 0.00 0.00 2.69
160 161 1.112916 TGGGACTCACGACAGCTTCA 61.113 55.000 0.00 0.00 0.00 3.02
161 162 0.033504 TTGGGACTCACGACAGCTTC 59.966 55.000 0.00 0.00 0.00 3.86
162 163 0.249911 GTTGGGACTCACGACAGCTT 60.250 55.000 0.00 0.00 0.00 3.74
163 164 1.367840 GTTGGGACTCACGACAGCT 59.632 57.895 0.00 0.00 0.00 4.24
164 165 2.022129 CGTTGGGACTCACGACAGC 61.022 63.158 0.00 0.00 0.00 4.40
165 166 2.022129 GCGTTGGGACTCACGACAG 61.022 63.158 0.00 0.00 0.00 3.51
166 167 2.028484 GCGTTGGGACTCACGACA 59.972 61.111 0.00 0.00 0.00 4.35
167 168 0.949105 AATGCGTTGGGACTCACGAC 60.949 55.000 0.00 0.00 0.00 4.34
168 169 0.948623 CAATGCGTTGGGACTCACGA 60.949 55.000 11.00 0.00 0.00 4.35
169 170 0.948623 TCAATGCGTTGGGACTCACG 60.949 55.000 18.37 0.00 35.99 4.35
170 171 0.798776 CTCAATGCGTTGGGACTCAC 59.201 55.000 13.61 0.00 38.10 3.51
171 172 0.396435 ACTCAATGCGTTGGGACTCA 59.604 50.000 25.28 0.29 38.10 3.41
172 173 1.523758 AACTCAATGCGTTGGGACTC 58.476 50.000 25.28 0.00 38.10 3.36
173 174 2.851263 TAACTCAATGCGTTGGGACT 57.149 45.000 25.28 13.36 38.10 3.85
174 175 3.252458 ACTTTAACTCAATGCGTTGGGAC 59.748 43.478 25.28 0.00 38.10 4.46
175 176 3.482436 ACTTTAACTCAATGCGTTGGGA 58.518 40.909 25.28 0.08 38.10 4.37
176 177 3.915437 ACTTTAACTCAATGCGTTGGG 57.085 42.857 17.19 17.19 41.76 4.12
177 178 6.964934 GGTTATACTTTAACTCAATGCGTTGG 59.035 38.462 18.37 11.44 35.99 3.77
178 179 7.523219 TGGTTATACTTTAACTCAATGCGTTG 58.477 34.615 12.66 12.66 36.65 4.10
179 180 7.675962 TGGTTATACTTTAACTCAATGCGTT 57.324 32.000 0.00 0.00 0.00 4.84
180 181 7.335924 ACATGGTTATACTTTAACTCAATGCGT 59.664 33.333 0.00 0.00 0.00 5.24
181 182 7.693952 ACATGGTTATACTTTAACTCAATGCG 58.306 34.615 0.00 0.00 0.00 4.73
182 183 8.893727 AGACATGGTTATACTTTAACTCAATGC 58.106 33.333 0.00 0.00 0.00 3.56
215 216 8.962884 TGTGTGACATGCATTAATATTCTACT 57.037 30.769 0.00 0.00 0.00 2.57
218 219 9.926158 TTTTTGTGTGACATGCATTAATATTCT 57.074 25.926 0.00 0.00 0.00 2.40
321 322 9.225201 CTTGTGTTTTCGGTCATATTAATCATG 57.775 33.333 0.00 0.00 0.00 3.07
325 326 6.255215 CGCTTGTGTTTTCGGTCATATTAAT 58.745 36.000 0.00 0.00 0.00 1.40
337 340 3.311596 ACAGTACTTCCGCTTGTGTTTTC 59.688 43.478 0.00 0.00 0.00 2.29
342 345 3.121126 CGTTTACAGTACTTCCGCTTGTG 60.121 47.826 0.00 0.00 0.00 3.33
347 350 3.504863 TCATCGTTTACAGTACTTCCGC 58.495 45.455 0.00 0.00 0.00 5.54
350 353 4.430908 CCCCTCATCGTTTACAGTACTTC 58.569 47.826 0.00 0.00 0.00 3.01
351 354 3.197116 CCCCCTCATCGTTTACAGTACTT 59.803 47.826 0.00 0.00 0.00 2.24
352 355 2.764572 CCCCCTCATCGTTTACAGTACT 59.235 50.000 0.00 0.00 0.00 2.73
353 356 2.498885 ACCCCCTCATCGTTTACAGTAC 59.501 50.000 0.00 0.00 0.00 2.73
364 367 1.501582 AGAAGTGCTACCCCCTCATC 58.498 55.000 0.00 0.00 0.00 2.92
366 369 2.634639 TAAGAAGTGCTACCCCCTCA 57.365 50.000 0.00 0.00 0.00 3.86
371 374 3.118884 TGTTCGGATAAGAAGTGCTACCC 60.119 47.826 0.00 0.00 0.00 3.69
376 380 1.666189 GGCTGTTCGGATAAGAAGTGC 59.334 52.381 0.00 0.00 0.00 4.40
377 381 2.673368 GTGGCTGTTCGGATAAGAAGTG 59.327 50.000 0.00 0.00 0.00 3.16
380 384 3.767673 ACTAGTGGCTGTTCGGATAAGAA 59.232 43.478 0.00 0.00 0.00 2.52
381 385 3.130516 CACTAGTGGCTGTTCGGATAAGA 59.869 47.826 15.49 0.00 0.00 2.10
387 391 1.714794 CTTCACTAGTGGCTGTTCGG 58.285 55.000 22.48 0.00 0.00 4.30
389 393 1.071605 CGCTTCACTAGTGGCTGTTC 58.928 55.000 22.48 5.87 0.00 3.18
399 403 0.942410 GGAACACGCACGCTTCACTA 60.942 55.000 0.00 0.00 0.00 2.74
416 433 0.251297 CAAGTGTCAATGCCCAGGGA 60.251 55.000 10.89 0.00 0.00 4.20
441 458 3.124921 AAAATGCTCCGGGTCGCG 61.125 61.111 0.00 0.00 0.00 5.87
449 466 1.202222 CGCCAGATGTCAAAATGCTCC 60.202 52.381 0.00 0.00 0.00 4.70
500 517 0.868406 GTTTTCTGCTGACTCCGGTG 59.132 55.000 0.00 0.00 0.00 4.94
503 520 1.433534 GAGGTTTTCTGCTGACTCCG 58.566 55.000 0.00 0.00 0.00 4.63
512 538 2.526304 TCCAGTCACGAGGTTTTCTG 57.474 50.000 0.00 0.00 0.00 3.02
535 561 1.335872 CCAACAAGTTCATGGCGGAAC 60.336 52.381 12.36 12.36 45.87 3.62
571 597 1.586154 CCACGCACCATTTCTGGACC 61.586 60.000 0.00 0.00 46.37 4.46
627 654 2.030981 GTCTGTATCTAGGCGGTAGTGC 60.031 54.545 0.00 0.00 0.00 4.40
651 678 1.446272 CTCGGTGTCGGCTTTCTCC 60.446 63.158 0.00 0.00 36.95 3.71
686 713 0.921347 GATGCGCGACGTTTGTATCT 59.079 50.000 12.10 0.00 0.00 1.98
688 715 1.628983 CGATGCGCGACGTTTGTAT 59.371 52.632 12.10 0.00 44.57 2.29
689 716 2.438148 CCGATGCGCGACGTTTGTA 61.438 57.895 12.10 0.00 44.57 2.41
746 773 1.305802 TCTGACACTATGGGGCCGT 60.306 57.895 0.00 0.00 0.00 5.68
758 785 1.105167 ACGGGAGTGTTCGTCTGACA 61.105 55.000 8.73 0.00 44.82 3.58
950 993 4.836825 ACAATGGATCGAACTGACAAGAT 58.163 39.130 0.00 0.00 0.00 2.40
954 997 4.678044 GCTCTACAATGGATCGAACTGACA 60.678 45.833 0.00 0.00 0.00 3.58
955 998 3.799420 GCTCTACAATGGATCGAACTGAC 59.201 47.826 0.00 0.00 0.00 3.51
956 999 3.489229 CGCTCTACAATGGATCGAACTGA 60.489 47.826 0.00 0.00 0.00 3.41
958 1001 2.799917 GCGCTCTACAATGGATCGAACT 60.800 50.000 0.00 0.00 0.00 3.01
1596 1697 1.657181 GTTGTTCTTTGTGCGGCGG 60.657 57.895 9.78 0.00 0.00 6.13
3116 3594 1.533033 TCCTCACCTGCTCCGTCAA 60.533 57.895 0.00 0.00 0.00 3.18
3379 3857 2.645838 ATGGGGATTGAACTGATCCG 57.354 50.000 0.00 0.00 43.28 4.18
3394 3872 3.231818 AGAGGAGTACATCGGTAATGGG 58.768 50.000 0.00 0.00 39.90 4.00
3402 3880 3.058293 GCAGATCAGAGAGGAGTACATCG 60.058 52.174 0.00 0.00 31.71 3.84
3407 3885 4.099113 CACATTGCAGATCAGAGAGGAGTA 59.901 45.833 0.00 0.00 0.00 2.59
3410 3888 3.102204 TCACATTGCAGATCAGAGAGGA 58.898 45.455 0.00 0.00 0.00 3.71
3411 3889 3.538634 TCACATTGCAGATCAGAGAGG 57.461 47.619 0.00 0.00 0.00 3.69
3412 3890 3.248841 GCATCACATTGCAGATCAGAGAG 59.751 47.826 0.00 0.00 42.31 3.20
3439 3921 2.606961 CCTGCACGCACACACGAAT 61.607 57.895 0.00 0.00 36.70 3.34
3450 3932 4.007644 TGCCTCCTCACCTGCACG 62.008 66.667 0.00 0.00 0.00 5.34
3660 4151 2.825836 GGGGCTGGATTGCTGTCG 60.826 66.667 0.00 0.00 0.00 4.35
3664 4155 3.011517 AGACGGGGCTGGATTGCT 61.012 61.111 0.00 0.00 0.00 3.91
3677 4168 2.167398 AACATGGTGACGGGGAGACG 62.167 60.000 0.00 0.00 40.31 4.18
3683 4174 1.535462 GTTCAGAAACATGGTGACGGG 59.465 52.381 0.00 0.00 35.36 5.28
3694 4185 1.327507 GGCGCGAAATGTTCAGAAAC 58.672 50.000 12.10 0.00 35.85 2.78
3696 4187 1.164411 ATGGCGCGAAATGTTCAGAA 58.836 45.000 12.10 0.00 0.00 3.02
3697 4188 1.135717 CAATGGCGCGAAATGTTCAGA 60.136 47.619 12.10 0.00 0.00 3.27
3699 4190 0.732196 GCAATGGCGCGAAATGTTCA 60.732 50.000 12.10 0.00 0.00 3.18
3700 4191 1.990674 GCAATGGCGCGAAATGTTC 59.009 52.632 12.10 0.00 0.00 3.18
3701 4192 4.167483 GCAATGGCGCGAAATGTT 57.833 50.000 12.10 0.00 0.00 2.71
3711 4202 2.476854 CGAAAGCAGAGTTAGCAATGGC 60.477 50.000 0.00 0.00 41.61 4.40
3712 4203 2.744202 ACGAAAGCAGAGTTAGCAATGG 59.256 45.455 0.00 0.00 0.00 3.16
3713 4204 4.410492 AACGAAAGCAGAGTTAGCAATG 57.590 40.909 0.00 0.00 0.00 2.82
3717 4208 4.468095 TTCAAACGAAAGCAGAGTTAGC 57.532 40.909 0.00 0.00 0.00 3.09
3718 4209 6.228273 TGATTCAAACGAAAGCAGAGTTAG 57.772 37.500 0.00 0.00 0.00 2.34
3719 4210 6.427150 GTTGATTCAAACGAAAGCAGAGTTA 58.573 36.000 0.00 0.00 0.00 2.24
3721 4212 4.848757 GTTGATTCAAACGAAAGCAGAGT 58.151 39.130 0.00 0.00 0.00 3.24
3732 4223 2.298300 CTGCACGTCGTTGATTCAAAC 58.702 47.619 0.00 0.00 0.00 2.93
3734 4225 0.865111 CCTGCACGTCGTTGATTCAA 59.135 50.000 0.00 0.00 0.00 2.69
3735 4226 0.249699 ACCTGCACGTCGTTGATTCA 60.250 50.000 0.00 0.00 0.00 2.57
3736 4227 0.163788 CACCTGCACGTCGTTGATTC 59.836 55.000 0.00 0.00 0.00 2.52
3737 4228 0.531974 ACACCTGCACGTCGTTGATT 60.532 50.000 0.00 0.00 0.00 2.57
3740 4231 0.438445 CATACACCTGCACGTCGTTG 59.562 55.000 0.00 0.00 0.00 4.10
3741 4232 0.669318 CCATACACCTGCACGTCGTT 60.669 55.000 0.00 0.00 0.00 3.85
3746 4237 3.864686 GCGCCATACACCTGCACG 61.865 66.667 0.00 0.00 0.00 5.34
4160 6233 2.038837 GTAACAGCTTCCGGCCACC 61.039 63.158 2.24 0.00 43.05 4.61
4205 6282 2.473816 TCGCTTTCAACAGACTCACAG 58.526 47.619 0.00 0.00 0.00 3.66
4329 6409 4.642437 TGGTTTTATCAGCCGATGCATTTA 59.358 37.500 0.00 0.00 41.13 1.40
4340 6420 8.178964 TGTGTATAATTCGTTGGTTTTATCAGC 58.821 33.333 0.00 0.00 0.00 4.26
4389 6520 4.452455 GCCGTCTTTTTCTTCATCTCTGAA 59.548 41.667 0.00 0.00 39.07 3.02
4392 6523 2.996621 CGCCGTCTTTTTCTTCATCTCT 59.003 45.455 0.00 0.00 0.00 3.10
4422 6553 2.595238 CTAAGATAGTGGGGGTACGCT 58.405 52.381 10.04 0.00 42.66 5.07
4428 6559 1.774856 CCAACCCTAAGATAGTGGGGG 59.225 57.143 0.00 0.00 44.97 5.40
4429 6560 2.438392 GACCAACCCTAAGATAGTGGGG 59.562 54.545 0.00 0.00 44.97 4.96
4430 6561 3.112263 TGACCAACCCTAAGATAGTGGG 58.888 50.000 0.00 0.00 46.07 4.61
4431 6562 4.030913 TCTGACCAACCCTAAGATAGTGG 58.969 47.826 0.00 0.00 0.00 4.00
4432 6563 4.100189 CCTCTGACCAACCCTAAGATAGTG 59.900 50.000 0.00 0.00 0.00 2.74
4434 6565 3.070302 GCCTCTGACCAACCCTAAGATAG 59.930 52.174 0.00 0.00 0.00 2.08
4435 6566 3.039011 GCCTCTGACCAACCCTAAGATA 58.961 50.000 0.00 0.00 0.00 1.98
4437 6568 1.276622 GCCTCTGACCAACCCTAAGA 58.723 55.000 0.00 0.00 0.00 2.10
4438 6569 0.108138 CGCCTCTGACCAACCCTAAG 60.108 60.000 0.00 0.00 0.00 2.18
4439 6570 1.550130 CCGCCTCTGACCAACCCTAA 61.550 60.000 0.00 0.00 0.00 2.69
4440 6571 1.987855 CCGCCTCTGACCAACCCTA 60.988 63.158 0.00 0.00 0.00 3.53
4441 6572 3.322466 CCGCCTCTGACCAACCCT 61.322 66.667 0.00 0.00 0.00 4.34
4442 6573 3.637273 ACCGCCTCTGACCAACCC 61.637 66.667 0.00 0.00 0.00 4.11
4443 6574 2.358737 CACCGCCTCTGACCAACC 60.359 66.667 0.00 0.00 0.00 3.77
4444 6575 2.358737 CCACCGCCTCTGACCAAC 60.359 66.667 0.00 0.00 0.00 3.77
4445 6576 3.636231 CCCACCGCCTCTGACCAA 61.636 66.667 0.00 0.00 0.00 3.67
4447 6578 4.394712 CACCCACCGCCTCTGACC 62.395 72.222 0.00 0.00 0.00 4.02
4448 6579 4.394712 CCACCCACCGCCTCTGAC 62.395 72.222 0.00 0.00 0.00 3.51
4457 6588 4.603535 AGCAGCAACCCACCCACC 62.604 66.667 0.00 0.00 0.00 4.61
4458 6589 2.521708 AAGCAGCAACCCACCCAC 60.522 61.111 0.00 0.00 0.00 4.61
4459 6590 2.203480 GAAGCAGCAACCCACCCA 60.203 61.111 0.00 0.00 0.00 4.51
4460 6591 3.365265 CGAAGCAGCAACCCACCC 61.365 66.667 0.00 0.00 0.00 4.61
4473 6604 2.031682 CACCAAAAGAACTCTGGCGAAG 60.032 50.000 0.00 0.00 33.19 3.79
4484 6615 1.894756 CCGGCGACCACCAAAAGAA 60.895 57.895 9.30 0.00 0.00 2.52
4485 6616 2.281208 CCGGCGACCACCAAAAGA 60.281 61.111 9.30 0.00 0.00 2.52
4486 6617 3.361977 CCCGGCGACCACCAAAAG 61.362 66.667 9.30 0.00 0.00 2.27
4491 6622 4.832608 CTAAGCCCGGCGACCACC 62.833 72.222 9.30 0.00 0.00 4.61
4492 6623 3.718210 CTCTAAGCCCGGCGACCAC 62.718 68.421 9.30 0.00 0.00 4.16
4493 6624 3.458163 CTCTAAGCCCGGCGACCA 61.458 66.667 9.30 0.00 0.00 4.02
4494 6625 4.222847 CCTCTAAGCCCGGCGACC 62.223 72.222 9.30 0.00 0.00 4.79
4495 6626 4.222847 CCCTCTAAGCCCGGCGAC 62.223 72.222 9.30 0.00 0.00 5.19
4499 6630 2.520536 CCATCCCCTCTAAGCCCGG 61.521 68.421 0.00 0.00 0.00 5.73
4501 6632 2.839836 GCCATCCCCTCTAAGCCC 59.160 66.667 0.00 0.00 0.00 5.19
4502 6633 2.427753 CGCCATCCCCTCTAAGCC 59.572 66.667 0.00 0.00 0.00 4.35
4503 6634 1.227674 CACGCCATCCCCTCTAAGC 60.228 63.158 0.00 0.00 0.00 3.09
4504 6635 1.447643 CCACGCCATCCCCTCTAAG 59.552 63.158 0.00 0.00 0.00 2.18
4506 6637 3.161450 GCCACGCCATCCCCTCTA 61.161 66.667 0.00 0.00 0.00 2.43
4527 6658 3.927163 AACCGTCGATCGTGCCACC 62.927 63.158 15.94 0.00 37.94 4.61
4528 6659 2.431942 AACCGTCGATCGTGCCAC 60.432 61.111 15.94 4.74 37.94 5.01
4529 6660 2.431771 CAACCGTCGATCGTGCCA 60.432 61.111 15.94 0.00 37.94 4.92
4530 6661 2.126228 TCAACCGTCGATCGTGCC 60.126 61.111 15.94 3.66 37.94 5.01
4531 6662 0.525668 ATCTCAACCGTCGATCGTGC 60.526 55.000 15.94 8.58 37.94 5.34
4532 6663 1.191944 CATCTCAACCGTCGATCGTG 58.808 55.000 15.94 9.00 37.94 4.35
4534 6665 0.100682 ACCATCTCAACCGTCGATCG 59.899 55.000 9.36 9.36 39.52 3.69
4535 6666 2.194271 GAACCATCTCAACCGTCGATC 58.806 52.381 0.00 0.00 0.00 3.69
4536 6667 1.469251 CGAACCATCTCAACCGTCGAT 60.469 52.381 0.00 0.00 0.00 3.59
4538 6669 0.109458 TCGAACCATCTCAACCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
4539 6670 1.630148 CTCGAACCATCTCAACCGTC 58.370 55.000 0.00 0.00 0.00 4.79
4540 6671 0.246635 CCTCGAACCATCTCAACCGT 59.753 55.000 0.00 0.00 0.00 4.83
4541 6672 0.460284 CCCTCGAACCATCTCAACCG 60.460 60.000 0.00 0.00 0.00 4.44
4542 6673 0.902531 TCCCTCGAACCATCTCAACC 59.097 55.000 0.00 0.00 0.00 3.77
4544 6675 1.195115 CCTCCCTCGAACCATCTCAA 58.805 55.000 0.00 0.00 0.00 3.02
4545 6676 0.687757 CCCTCCCTCGAACCATCTCA 60.688 60.000 0.00 0.00 0.00 3.27
4546 6677 2.034048 GCCCTCCCTCGAACCATCTC 62.034 65.000 0.00 0.00 0.00 2.75
4547 6678 2.066999 GCCCTCCCTCGAACCATCT 61.067 63.158 0.00 0.00 0.00 2.90
4548 6679 2.506472 GCCCTCCCTCGAACCATC 59.494 66.667 0.00 0.00 0.00 3.51
4549 6680 3.090532 GGCCCTCCCTCGAACCAT 61.091 66.667 0.00 0.00 0.00 3.55
4552 6683 4.452733 CACGGCCCTCCCTCGAAC 62.453 72.222 0.00 0.00 0.00 3.95
4572 6961 2.811317 CTTCAGTGACCGCCTCGC 60.811 66.667 0.00 0.00 0.00 5.03
4584 6973 2.587194 CCGCCTCCGATGCTTCAG 60.587 66.667 0.08 0.00 36.29 3.02
4585 6974 4.838152 GCCGCCTCCGATGCTTCA 62.838 66.667 0.08 0.00 36.29 3.02
4606 6995 3.350909 TTCCTCGATCCACCGTGCG 62.351 63.158 0.00 0.00 0.00 5.34
4610 6999 2.271800 CTTTTCTTCCTCGATCCACCG 58.728 52.381 0.00 0.00 0.00 4.94
4642 7053 3.492656 GCTGAAAAACCTTCTTCAACCCC 60.493 47.826 0.00 0.00 31.41 4.95
4643 7054 3.492656 GGCTGAAAAACCTTCTTCAACCC 60.493 47.826 0.00 0.00 33.50 4.11
4656 7068 3.766068 TGCAAATCATGGGCTGAAAAA 57.234 38.095 0.00 0.00 37.44 1.94
4667 7079 2.097110 AGCCATCCCATGCAAATCAT 57.903 45.000 0.00 0.00 35.31 2.45
4710 7123 9.533253 GCTGTATGTCATTTGCCTATAATTTTT 57.467 29.630 0.00 0.00 0.00 1.94
4711 7124 8.143835 GGCTGTATGTCATTTGCCTATAATTTT 58.856 33.333 13.05 0.00 37.58 1.82
4712 7125 7.287466 TGGCTGTATGTCATTTGCCTATAATTT 59.713 33.333 18.09 0.00 40.82 1.82
4713 7126 6.777091 TGGCTGTATGTCATTTGCCTATAATT 59.223 34.615 18.09 0.00 40.82 1.40
4714 7127 6.306199 TGGCTGTATGTCATTTGCCTATAAT 58.694 36.000 18.09 0.00 40.82 1.28
4716 7129 5.303259 TGGCTGTATGTCATTTGCCTATA 57.697 39.130 18.09 3.06 40.82 1.31
4717 7130 4.169059 TGGCTGTATGTCATTTGCCTAT 57.831 40.909 18.09 0.00 40.82 2.57
4718 7131 3.643199 TGGCTGTATGTCATTTGCCTA 57.357 42.857 18.09 7.61 40.82 3.93
4719 7132 2.512692 TGGCTGTATGTCATTTGCCT 57.487 45.000 18.09 0.00 40.82 4.75
4720 7133 2.736400 GCTTGGCTGTATGTCATTTGCC 60.736 50.000 13.30 13.30 40.62 4.52
4725 7138 0.921896 AGGGCTTGGCTGTATGTCAT 59.078 50.000 0.00 0.00 0.00 3.06
4733 7146 2.381911 ACATAATTCAGGGCTTGGCTG 58.618 47.619 0.00 0.00 0.00 4.85
4777 7206 6.778069 ACTATTCCTCGACAGATGGAATTAGA 59.222 38.462 17.92 3.56 45.19 2.10
4779 7208 6.549736 TGACTATTCCTCGACAGATGGAATTA 59.450 38.462 17.92 6.73 45.19 1.40
4800 7229 5.381757 TGTTGGCTAAAATGGTTAGTGACT 58.618 37.500 0.00 0.00 0.00 3.41
4865 7300 6.771188 AACAAACTCATATATAGCTCGCAC 57.229 37.500 0.00 0.00 0.00 5.34
4915 7351 6.436843 AAAATTGTTAGTGGCTATTCCTCG 57.563 37.500 0.00 0.00 35.26 4.63
4919 7355 8.301002 TGTTGGTAAAATTGTTAGTGGCTATTC 58.699 33.333 0.00 0.00 0.00 1.75
4931 7367 7.275920 TGCCTGTTAATTGTTGGTAAAATTGT 58.724 30.769 0.00 0.00 0.00 2.71
4932 7368 7.721286 TGCCTGTTAATTGTTGGTAAAATTG 57.279 32.000 0.00 0.00 0.00 2.32
4933 7369 7.936301 ACATGCCTGTTAATTGTTGGTAAAATT 59.064 29.630 0.00 0.00 28.70 1.82
4954 7391 7.804600 GGGAATTTTCAAAATTTCTTGACATGC 59.195 33.333 12.75 0.00 35.07 4.06
4960 7397 7.575365 CCTTCGGGAATTTTCAAAATTTCTTG 58.425 34.615 12.75 6.98 37.25 3.02
4981 7418 1.578206 GCTCGCACCAAGTTCCCTTC 61.578 60.000 0.00 0.00 0.00 3.46
5000 7437 7.389330 TGAATTATTTGGTACATATAGGGTGCG 59.611 37.037 0.00 0.00 39.30 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.