Multiple sequence alignment - TraesCS1D01G341600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1D01G341600
chr1D
100.000
4398
0
0
1
4398
431703054
431707451
0.000000e+00
8122.0
1
TraesCS1D01G341600
chr1D
100.000
66
0
0
4618
4683
431707671
431707736
6.360000e-24
122.0
2
TraesCS1D01G341600
chr1A
93.666
3647
164
24
283
3886
530170451
530174073
0.000000e+00
5393.0
3
TraesCS1D01G341600
chr1A
87.209
344
22
6
4062
4398
530174682
530175010
5.720000e-99
372.0
4
TraesCS1D01G341600
chr1A
87.838
296
16
5
13
293
530169680
530169970
3.490000e-86
329.0
5
TraesCS1D01G341600
chr1A
90.164
122
6
2
173
293
530170205
530170321
2.260000e-33
154.0
6
TraesCS1D01G341600
chr1A
97.561
41
1
0
3911
3951
530174315
530174355
2.340000e-08
71.3
7
TraesCS1D01G341600
chr1B
92.757
2292
115
22
1
2284
582903917
582906165
0.000000e+00
3265.0
8
TraesCS1D01G341600
chr1B
92.085
1693
77
21
2331
4011
582906243
582907890
0.000000e+00
2331.0
9
TraesCS1D01G341600
chr1B
90.208
337
21
8
4062
4390
582908041
582908373
3.350000e-116
429.0
10
TraesCS1D01G341600
chr1B
93.023
43
3
0
4618
4660
582908681
582908723
3.910000e-06
63.9
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1D01G341600
chr1D
431703054
431707736
4682
False
4122.000
8122
100.00000
1
4683
2
chr1D.!!$F1
4682
1
TraesCS1D01G341600
chr1A
530169680
530175010
5330
False
1263.860
5393
91.28760
13
4398
5
chr1A.!!$F1
4385
2
TraesCS1D01G341600
chr1B
582903917
582908723
4806
False
1522.225
3265
92.01825
1
4660
4
chr1B.!!$F1
4659
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
450
973
0.251341
CCTTTCCTTCCCACCCTGTG
60.251
60.0
0.00
0.00
0.00
3.66
F
1330
1883
0.510359
GTCGATGATGCAAGATCGGC
59.490
55.0
23.12
20.02
41.46
5.54
F
1731
2284
0.393077
ATGATAGTCCCCCTTTCGCG
59.607
55.0
0.00
0.00
0.00
5.87
F
3316
3922
0.319125
TTCCAATTTGTTTCCGCCGC
60.319
50.0
0.00
0.00
0.00
6.53
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1452
2005
0.037447
ACCTCAAGCTTTGCTCCTCC
59.963
55.0
0.00
0.0
38.25
4.30
R
3093
3699
0.256752
TGCCTGGGTCATCTTCCATG
59.743
55.0
0.00
0.0
31.95
3.66
R
3415
4021
0.603975
GGCAGCTCGAAGGAACAACT
60.604
55.0
0.00
0.0
0.00
3.16
R
4661
5816
0.304705
CTCATATCAACGCGGCAACC
59.695
55.0
12.47
0.0
0.00
3.77
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
52
59
2.023788
GCTCCTCTCCTGTCTCCTCTG
61.024
61.905
0.00
0.00
0.00
3.35
237
610
4.697756
CCTCCGGCGGCTGTTTCA
62.698
66.667
23.83
0.00
0.00
2.69
259
633
1.222387
CATTCCCTTTCGCCGGGTA
59.778
57.895
2.18
0.00
42.56
3.69
335
849
0.456995
GAGAAAGAGGCGTGAGACCG
60.457
60.000
0.00
0.00
43.69
4.79
369
891
2.294791
TCCCGCCACAAAAACAATACTG
59.705
45.455
0.00
0.00
0.00
2.74
434
956
2.955881
CGTCGCTTTCCCTCCCCTT
61.956
63.158
0.00
0.00
0.00
3.95
435
958
1.379146
GTCGCTTTCCCTCCCCTTT
59.621
57.895
0.00
0.00
0.00
3.11
437
960
1.378646
CGCTTTCCCTCCCCTTTCC
60.379
63.158
0.00
0.00
0.00
3.13
449
972
1.435346
CCCTTTCCTTCCCACCCTGT
61.435
60.000
0.00
0.00
0.00
4.00
450
973
0.251341
CCTTTCCTTCCCACCCTGTG
60.251
60.000
0.00
0.00
0.00
3.66
451
974
0.771127
CTTTCCTTCCCACCCTGTGA
59.229
55.000
0.00
0.00
35.23
3.58
452
975
0.771127
TTTCCTTCCCACCCTGTGAG
59.229
55.000
0.00
0.00
35.23
3.51
470
1005
4.406173
CGAGCGAGCGGTGTGTCT
62.406
66.667
0.00
0.00
0.00
3.41
498
1033
4.161295
CCGCGCTCCCCTCATTCA
62.161
66.667
5.56
0.00
0.00
2.57
590
1125
4.203076
CCCGCCCTCGTTCGGTAG
62.203
72.222
0.00
0.00
43.87
3.18
591
1126
3.136123
CCGCCCTCGTTCGGTAGA
61.136
66.667
0.00
0.00
40.72
2.59
592
1127
2.487532
CCGCCCTCGTTCGGTAGAT
61.488
63.158
0.00
0.00
40.72
1.98
593
1128
1.436336
CGCCCTCGTTCGGTAGATT
59.564
57.895
0.00
0.00
0.00
2.40
656
1197
1.146263
GAATCTGGTAGTGCCCCCG
59.854
63.158
0.00
0.00
36.04
5.73
657
1198
2.942648
GAATCTGGTAGTGCCCCCGC
62.943
65.000
0.00
0.00
36.04
6.13
675
1216
2.203015
CCCCGATACGCACAAGGG
60.203
66.667
0.00
0.00
41.68
3.95
677
1218
2.125310
CCGATACGCACAAGGGCA
60.125
61.111
0.00
0.00
0.00
5.36
688
1229
2.297033
GCACAAGGGCAGATTTTTCTCA
59.703
45.455
0.00
0.00
0.00
3.27
758
1299
0.693049
AACTGATTCAGGTTCGGGCT
59.307
50.000
17.66
0.00
35.51
5.19
763
1304
0.743345
ATTCAGGTTCGGGCTAACGC
60.743
55.000
0.00
0.00
0.00
4.84
799
1343
1.133025
GATTGGCGGTTGAATCTGGTG
59.867
52.381
0.00
0.00
0.00
4.17
936
1480
3.582208
AGTTCTCTGATCCAGTTCTTGCT
59.418
43.478
0.00
0.00
32.61
3.91
1215
1759
3.825611
CCCAGGGCAAAATCGGCG
61.826
66.667
0.00
0.00
0.00
6.46
1326
1879
3.525537
AGAAACGTCGATGATGCAAGAT
58.474
40.909
12.58
0.00
0.00
2.40
1327
1880
3.553511
AGAAACGTCGATGATGCAAGATC
59.446
43.478
12.58
0.00
0.00
2.75
1328
1881
1.481240
ACGTCGATGATGCAAGATCG
58.519
50.000
19.53
19.53
42.29
3.69
1329
1882
0.780596
CGTCGATGATGCAAGATCGG
59.219
55.000
23.12
10.22
41.46
4.18
1330
1883
0.510359
GTCGATGATGCAAGATCGGC
59.490
55.000
23.12
20.02
41.46
5.54
1331
1884
0.940991
TCGATGATGCAAGATCGGCG
60.941
55.000
23.12
0.00
41.46
6.46
1332
1885
1.206072
GATGATGCAAGATCGGCGC
59.794
57.895
0.00
0.00
0.00
6.53
1333
1886
2.490262
GATGATGCAAGATCGGCGCG
62.490
60.000
0.00
0.00
0.00
6.86
1334
1887
2.961721
GATGCAAGATCGGCGCGA
60.962
61.111
12.10
2.30
41.13
5.87
1452
2005
2.928731
GCTGGAGTTCTCTTTCCACTCG
60.929
54.545
0.00
0.00
38.53
4.18
1728
2281
2.224646
GCTGGATGATAGTCCCCCTTTC
60.225
54.545
0.00
0.00
37.48
2.62
1731
2284
0.393077
ATGATAGTCCCCCTTTCGCG
59.607
55.000
0.00
0.00
0.00
5.87
1754
2307
1.788258
TCTTCGACAAGAGCAGCAAG
58.212
50.000
0.00
0.00
33.38
4.01
2035
2588
4.643463
TGTCGAAGTTACCATTTTGGCTA
58.357
39.130
0.00
0.00
42.67
3.93
2121
2674
2.839486
TTCTAGCTATCCATTGCCCG
57.161
50.000
0.00
0.00
0.00
6.13
2179
2732
5.106157
GCAGTAACCACTATGTCATTTTGCT
60.106
40.000
0.00
0.00
32.21
3.91
2251
2804
2.224257
TGTTGAGTCAGTATGCAGCACA
60.224
45.455
0.00
0.00
34.76
4.57
2252
2805
2.375173
TGAGTCAGTATGCAGCACAG
57.625
50.000
0.00
0.00
34.76
3.66
2264
2817
2.259618
GCAGCACAGCTCAAATCATTG
58.740
47.619
0.00
0.00
36.40
2.82
2266
2819
3.613193
GCAGCACAGCTCAAATCATTGAA
60.613
43.478
0.00
0.00
44.64
2.69
2269
2822
3.367025
GCACAGCTCAAATCATTGAAAGC
59.633
43.478
0.00
0.00
44.64
3.51
2275
2828
4.143179
GCTCAAATCATTGAAAGCTGCAAC
60.143
41.667
1.02
0.00
44.64
4.17
2277
2830
4.746115
TCAAATCATTGAAAGCTGCAACAC
59.254
37.500
1.02
0.00
42.47
3.32
2487
3086
2.567169
CCCTGGAGATGACAAGTACACA
59.433
50.000
0.00
0.00
0.00
3.72
2565
3170
4.024893
CCGTACCATCAGTGTAATCAATGC
60.025
45.833
0.00
0.00
39.17
3.56
2598
3204
3.008375
TCAAGCTCATAGCCTGTTTCACT
59.992
43.478
0.00
0.00
43.77
3.41
2648
3254
4.523173
TCGCTTGATATTAGACTACCTGGG
59.477
45.833
0.00
0.00
0.00
4.45
2709
3315
4.020218
ACAGCACTGGTAGCATAAGAAAGA
60.020
41.667
2.21
0.00
34.19
2.52
2716
3322
7.766278
CACTGGTAGCATAAGAAAGACAGTATT
59.234
37.037
0.00
0.00
35.17
1.89
2748
3354
7.026631
TGTAGCTACATTTTATCATGTTGGC
57.973
36.000
22.67
0.00
38.40
4.52
2934
3540
4.331108
AGCAACTTCCTTTGGAGAAGATC
58.669
43.478
7.47
0.00
42.80
2.75
2956
3562
0.609131
CTCCGTTGCCCTGGACATTT
60.609
55.000
0.00
0.00
0.00
2.32
2988
3594
2.031683
GGAATACGTTCATTCGCAAGGG
59.968
50.000
0.00
0.00
36.04
3.95
3093
3699
2.610374
TGAAGACGTTTACTGCAACACC
59.390
45.455
0.00
0.00
0.00
4.16
3117
3723
2.565841
GAAGATGACCCAGGCACATAC
58.434
52.381
0.00
0.00
0.00
2.39
3216
3822
1.071071
TGGGAACTGGTTAGTGGTTCG
59.929
52.381
0.00
0.00
39.86
3.95
3279
3885
5.065474
TGCAGTTGTTAATAAGGTATTCGCC
59.935
40.000
0.00
0.00
0.00
5.54
3282
3888
6.317893
CAGTTGTTAATAAGGTATTCGCCCTT
59.682
38.462
0.00
0.00
44.43
3.95
3316
3922
0.319125
TTCCAATTTGTTTCCGCCGC
60.319
50.000
0.00
0.00
0.00
6.53
3379
3985
2.984471
CACAATTCTGCACATGAACTGC
59.016
45.455
0.00
0.00
35.03
4.40
3415
4021
8.924511
AATTCTAATTTCAGAACTTGAGACCA
57.075
30.769
0.00
0.00
37.37
4.02
3481
4087
2.129555
AATGCTGGTCCGCTCAACCT
62.130
55.000
7.14
0.00
37.69
3.50
3684
4299
2.393768
CGCCGAAGCTGCTGTGATT
61.394
57.895
1.35
0.00
36.60
2.57
3800
4415
8.293699
AGACACACCTTTCTTTTTCTTTACAT
57.706
30.769
0.00
0.00
0.00
2.29
3801
4416
8.749354
AGACACACCTTTCTTTTTCTTTACATT
58.251
29.630
0.00
0.00
0.00
2.71
3854
4470
7.861630
TCTGTTTTAGAAGAAAAACCATCTCG
58.138
34.615
9.10
0.00
44.89
4.04
3886
4502
9.698309
ATAGACGAAATCTTGATTGTATGGTAG
57.302
33.333
0.00
0.00
39.04
3.18
3887
4503
7.556844
AGACGAAATCTTGATTGTATGGTAGT
58.443
34.615
0.00
0.00
31.62
2.73
3888
4504
8.692710
AGACGAAATCTTGATTGTATGGTAGTA
58.307
33.333
0.00
0.00
31.62
1.82
3909
4745
7.897575
AGTATCAGCTAAAACTTGACTTCTG
57.102
36.000
0.00
0.00
0.00
3.02
3953
4837
6.434028
TGAAATCACAATACAGGAGAAAAGGG
59.566
38.462
0.00
0.00
0.00
3.95
3958
4842
8.153221
TCACAATACAGGAGAAAAGGGTTATA
57.847
34.615
0.00
0.00
0.00
0.98
3959
4843
8.778059
TCACAATACAGGAGAAAAGGGTTATAT
58.222
33.333
0.00
0.00
0.00
0.86
3960
4844
8.840321
CACAATACAGGAGAAAAGGGTTATATG
58.160
37.037
0.00
0.00
0.00
1.78
3961
4845
7.502561
ACAATACAGGAGAAAAGGGTTATATGC
59.497
37.037
0.00
0.00
0.00
3.14
3962
4846
5.717119
ACAGGAGAAAAGGGTTATATGCT
57.283
39.130
0.00
0.00
0.00
3.79
3963
4847
6.824958
ACAGGAGAAAAGGGTTATATGCTA
57.175
37.500
0.00
0.00
0.00
3.49
3964
4848
7.394144
ACAGGAGAAAAGGGTTATATGCTAT
57.606
36.000
0.00
0.00
0.00
2.97
3965
4849
8.506196
ACAGGAGAAAAGGGTTATATGCTATA
57.494
34.615
0.00
0.00
0.00
1.31
3966
4850
8.945193
ACAGGAGAAAAGGGTTATATGCTATAA
58.055
33.333
0.00
0.00
0.00
0.98
4021
4949
1.192534
GTTTGACGACAAGAAGGCTCG
59.807
52.381
0.00
0.00
37.32
5.03
4044
5083
4.732672
ATACTAAGGTTCCCGTCAGTTC
57.267
45.455
0.00
0.00
0.00
3.01
4090
5151
3.132467
AGTGGACCTAGAATCTTAACGCC
59.868
47.826
0.00
0.00
0.00
5.68
4122
5189
7.541783
GCCACGGTTTACATATATCGTGTATAA
59.458
37.037
16.48
1.18
44.07
0.98
4207
5280
5.968528
TGGTTAAAAATCGCCATAGTTGT
57.031
34.783
0.00
0.00
0.00
3.32
4214
5287
9.745880
TTAAAAATCGCCATAGTTGTAACAAAA
57.254
25.926
0.00
0.00
0.00
2.44
4220
5293
5.851177
CGCCATAGTTGTAACAAAAAGTCAG
59.149
40.000
0.00
0.00
0.00
3.51
4265
5338
7.548097
AGATCAGTGGTGTTAAGTACATAGTG
58.452
38.462
0.00
0.00
39.39
2.74
4274
5347
7.224167
GGTGTTAAGTACATAGTGCAGGTTATC
59.776
40.741
0.00
0.00
39.39
1.75
4293
5366
3.825908
TCTTGCAATTTTAGAGGGGGT
57.174
42.857
0.00
0.00
0.00
4.95
4294
5367
3.430453
TCTTGCAATTTTAGAGGGGGTG
58.570
45.455
0.00
0.00
0.00
4.61
4295
5368
1.555967
TGCAATTTTAGAGGGGGTGC
58.444
50.000
0.00
0.00
0.00
5.01
4296
5369
0.824109
GCAATTTTAGAGGGGGTGCC
59.176
55.000
0.00
0.00
0.00
5.01
4297
5370
1.894978
GCAATTTTAGAGGGGGTGCCA
60.895
52.381
0.00
0.00
0.00
4.92
4336
5410
0.686441
TGACACCCCCACTAGATCCG
60.686
60.000
0.00
0.00
0.00
4.18
4660
5815
6.263168
GGTGGAATATGCTTTGTTGCTACTAT
59.737
38.462
0.00
0.00
0.00
2.12
4661
5816
7.134815
GTGGAATATGCTTTGTTGCTACTATG
58.865
38.462
0.00
0.00
0.00
2.23
4662
5817
6.262944
TGGAATATGCTTTGTTGCTACTATGG
59.737
38.462
0.00
0.00
0.00
2.74
4663
5818
6.263168
GGAATATGCTTTGTTGCTACTATGGT
59.737
38.462
0.00
0.00
0.00
3.55
4664
5819
7.201821
GGAATATGCTTTGTTGCTACTATGGTT
60.202
37.037
0.00
0.00
0.00
3.67
4665
5820
4.764679
TGCTTTGTTGCTACTATGGTTG
57.235
40.909
0.00
0.00
0.00
3.77
4666
5821
3.057596
TGCTTTGTTGCTACTATGGTTGC
60.058
43.478
8.63
8.63
42.75
4.17
4667
5822
3.673323
GCTTTGTTGCTACTATGGTTGCC
60.673
47.826
12.62
0.00
42.00
4.52
4668
5823
1.732941
TGTTGCTACTATGGTTGCCG
58.267
50.000
12.62
0.00
42.00
5.69
4669
5824
0.377203
GTTGCTACTATGGTTGCCGC
59.623
55.000
12.62
2.62
42.00
6.53
4670
5825
1.087202
TTGCTACTATGGTTGCCGCG
61.087
55.000
12.62
0.00
42.00
6.46
4671
5826
1.520787
GCTACTATGGTTGCCGCGT
60.521
57.895
4.92
0.00
38.03
6.01
4672
5827
1.087771
GCTACTATGGTTGCCGCGTT
61.088
55.000
4.92
0.00
38.03
4.84
4673
5828
0.650512
CTACTATGGTTGCCGCGTTG
59.349
55.000
4.92
0.00
0.00
4.10
4674
5829
0.246910
TACTATGGTTGCCGCGTTGA
59.753
50.000
4.92
0.00
0.00
3.18
4675
5830
0.392461
ACTATGGTTGCCGCGTTGAT
60.392
50.000
4.92
0.00
0.00
2.57
4676
5831
1.134640
ACTATGGTTGCCGCGTTGATA
60.135
47.619
4.92
0.00
0.00
2.15
4677
5832
2.143122
CTATGGTTGCCGCGTTGATAT
58.857
47.619
4.92
0.00
0.00
1.63
4678
5833
0.662619
ATGGTTGCCGCGTTGATATG
59.337
50.000
4.92
0.00
0.00
1.78
4679
5834
0.391793
TGGTTGCCGCGTTGATATGA
60.392
50.000
4.92
0.00
0.00
2.15
4680
5835
0.304705
GGTTGCCGCGTTGATATGAG
59.695
55.000
4.92
0.00
0.00
2.90
4681
5836
0.304705
GTTGCCGCGTTGATATGAGG
59.695
55.000
4.92
0.00
33.73
3.86
4682
5837
0.813610
TTGCCGCGTTGATATGAGGG
60.814
55.000
4.92
0.00
31.47
4.30
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
52
59
3.384399
CGAGCGCGTACCGTATGC
61.384
66.667
8.43
12.07
39.71
3.14
155
176
4.410400
AGCGGAGGAAAAGCGGGG
62.410
66.667
0.00
0.00
35.78
5.73
233
606
2.495669
GGCGAAAGGGAATGGAATGAAA
59.504
45.455
0.00
0.00
0.00
2.69
237
610
0.751643
CCGGCGAAAGGGAATGGAAT
60.752
55.000
9.30
0.00
0.00
3.01
259
633
1.592669
CGCGCCCAGATCGAATCTT
60.593
57.895
0.00
0.00
37.58
2.40
335
849
2.761195
GCGGGATTCAAAGGCCGTC
61.761
63.158
0.00
0.00
0.00
4.79
369
891
0.664224
GCGAGTGGAGTAGGAGTAGC
59.336
60.000
0.00
0.00
0.00
3.58
434
956
1.779061
GCTCACAGGGTGGGAAGGAA
61.779
60.000
0.00
0.00
35.82
3.36
435
958
2.224159
GCTCACAGGGTGGGAAGGA
61.224
63.158
0.00
0.00
35.82
3.36
437
960
2.046892
CGCTCACAGGGTGGGAAG
60.047
66.667
0.00
0.00
35.82
3.46
535
1070
4.382320
TCGGTTCGGGAAAGGCCG
62.382
66.667
0.00
0.00
43.32
6.13
576
1111
0.458669
TCAATCTACCGAACGAGGGC
59.541
55.000
0.00
0.00
35.02
5.19
590
1125
3.443681
ACCACGGAATCAACCAATCAATC
59.556
43.478
0.00
0.00
0.00
2.67
591
1126
3.193267
CACCACGGAATCAACCAATCAAT
59.807
43.478
0.00
0.00
0.00
2.57
592
1127
2.556189
CACCACGGAATCAACCAATCAA
59.444
45.455
0.00
0.00
0.00
2.57
593
1128
2.158559
CACCACGGAATCAACCAATCA
58.841
47.619
0.00
0.00
0.00
2.57
656
1197
2.895372
CTTGTGCGTATCGGGGGC
60.895
66.667
0.00
0.00
0.00
5.80
657
1198
2.203015
CCTTGTGCGTATCGGGGG
60.203
66.667
0.00
0.00
0.00
5.40
660
1201
2.125310
TGCCCTTGTGCGTATCGG
60.125
61.111
0.00
0.00
0.00
4.18
661
1202
0.530650
ATCTGCCCTTGTGCGTATCG
60.531
55.000
0.00
0.00
0.00
2.92
662
1203
1.668419
AATCTGCCCTTGTGCGTATC
58.332
50.000
0.00
0.00
0.00
2.24
663
1204
2.128771
AAATCTGCCCTTGTGCGTAT
57.871
45.000
0.00
0.00
0.00
3.06
664
1205
1.904287
AAAATCTGCCCTTGTGCGTA
58.096
45.000
0.00
0.00
0.00
4.42
675
1216
8.983307
AATCAAGAAGAATGAGAAAAATCTGC
57.017
30.769
0.00
0.00
0.00
4.26
688
1229
8.897872
AAACAGCAAATCAAATCAAGAAGAAT
57.102
26.923
0.00
0.00
0.00
2.40
758
1299
2.046023
TCCTCCTCGTCGGCGTTA
60.046
61.111
10.18
0.00
39.49
3.18
962
1506
2.100605
AGCAAACCAGATCCGAGAAC
57.899
50.000
0.00
0.00
0.00
3.01
1116
1660
6.713903
TGAGCTCTGAATCAAAATCTTTCTGT
59.286
34.615
16.19
0.00
0.00
3.41
1330
1883
2.809601
CTTCGGTCCAACCTCGCG
60.810
66.667
0.00
0.00
35.66
5.87
1331
1884
2.434359
CCTTCGGTCCAACCTCGC
60.434
66.667
0.00
0.00
35.66
5.03
1332
1885
1.823169
TTCCCTTCGGTCCAACCTCG
61.823
60.000
0.00
0.00
35.66
4.63
1333
1886
0.399075
TTTCCCTTCGGTCCAACCTC
59.601
55.000
0.00
0.00
35.66
3.85
1334
1887
0.109913
GTTTCCCTTCGGTCCAACCT
59.890
55.000
0.00
0.00
35.66
3.50
1344
1897
0.321996
AGCTCAGACCGTTTCCCTTC
59.678
55.000
0.00
0.00
0.00
3.46
1356
1909
4.564782
ATCCAGTGATTTCAAGCTCAGA
57.435
40.909
0.00
0.00
0.00
3.27
1452
2005
0.037447
ACCTCAAGCTTTGCTCCTCC
59.963
55.000
0.00
0.00
38.25
4.30
1554
2107
1.134280
CCATCTCCAGCGACCTTGAAT
60.134
52.381
0.00
0.00
0.00
2.57
1635
2188
3.130160
GCAGCTTTCGCCTCCCTG
61.130
66.667
0.00
0.00
36.60
4.45
1728
2281
3.087638
TCTTGTCGAAGAGAACGCG
57.912
52.632
3.53
3.53
33.85
6.01
1752
2305
5.512404
GGCCCTTTTAGTTACCAATTTGCTT
60.512
40.000
0.00
0.00
0.00
3.91
1754
2307
4.020573
AGGCCCTTTTAGTTACCAATTTGC
60.021
41.667
0.00
0.00
0.00
3.68
1767
2320
0.331616
GCCAGGAAGAGGCCCTTTTA
59.668
55.000
0.00
0.00
46.50
1.52
1864
2417
3.181493
GCAAATCTGTGGCCAATGAGTAG
60.181
47.826
7.24
3.83
0.00
2.57
2035
2588
0.833287
ACATTACGATGCTGGAGCCT
59.167
50.000
0.00
0.00
41.18
4.58
2155
2708
5.095490
GCAAAATGACATAGTGGTTACTGC
58.905
41.667
0.00
0.00
37.78
4.40
2179
2732
6.321181
GGGCAGTTCCATGAATACATAGAAAA
59.679
38.462
0.00
0.00
36.33
2.29
2251
2804
3.257375
TGCAGCTTTCAATGATTTGAGCT
59.743
39.130
0.00
0.00
41.49
4.09
2252
2805
3.581755
TGCAGCTTTCAATGATTTGAGC
58.418
40.909
0.00
0.00
42.60
4.26
2275
2828
2.802816
GCCCTACAGAAGATAATGCGTG
59.197
50.000
0.00
0.00
0.00
5.34
2277
2830
2.037772
AGGCCCTACAGAAGATAATGCG
59.962
50.000
0.00
0.00
0.00
4.73
2284
2837
2.327325
AGTTGAGGCCCTACAGAAGA
57.673
50.000
0.00
0.00
0.00
2.87
2290
2843
5.254115
AGAAATACAAAGTTGAGGCCCTAC
58.746
41.667
0.00
0.00
0.00
3.18
2324
2923
5.179368
GTCATGCTTGCAGAAACACTACTAA
59.821
40.000
0.87
0.00
0.00
2.24
2325
2924
4.690748
GTCATGCTTGCAGAAACACTACTA
59.309
41.667
0.87
0.00
0.00
1.82
2565
3170
4.208047
GCTATGAGCTTGACAACTATGACG
59.792
45.833
0.00
0.00
38.45
4.35
2622
3228
7.093902
CCCAGGTAGTCTAATATCAAGCGAATA
60.094
40.741
0.00
0.00
0.00
1.75
2623
3229
6.295349
CCCAGGTAGTCTAATATCAAGCGAAT
60.295
42.308
0.00
0.00
0.00
3.34
2632
3238
3.248888
GGTGGCCCAGGTAGTCTAATAT
58.751
50.000
0.00
0.00
0.00
1.28
2633
3239
2.686119
GGTGGCCCAGGTAGTCTAATA
58.314
52.381
0.00
0.00
0.00
0.98
2648
3254
1.137404
CAAATACAGCTGCGGTGGC
59.863
57.895
15.27
0.00
35.13
5.01
2679
3285
5.982890
ATGCTACCAGTGCTGTTTTAAAT
57.017
34.783
0.00
0.00
0.00
1.40
2683
3289
4.651778
TCTTATGCTACCAGTGCTGTTTT
58.348
39.130
0.00
0.00
0.00
2.43
2727
3333
5.653769
AGTGCCAACATGATAAAATGTAGCT
59.346
36.000
0.00
0.00
39.89
3.32
2934
3540
1.450312
GTCCAGGGCAACGGAGATG
60.450
63.158
0.00
0.00
37.60
2.90
2956
3562
2.529780
ACGTATTCCAAACCACGTGA
57.470
45.000
19.30
0.00
45.14
4.35
2988
3594
2.162754
CACGTCGCGGTGGATTACC
61.163
63.158
6.13
0.00
46.56
2.85
3000
3606
0.318699
TGTTCTCAGGCTTCACGTCG
60.319
55.000
0.00
0.00
0.00
5.12
3093
3699
0.256752
TGCCTGGGTCATCTTCCATG
59.743
55.000
0.00
0.00
31.95
3.66
3117
3723
4.240103
TCCGGCGCCATCCATCTG
62.240
66.667
28.98
7.02
0.00
2.90
3216
3822
5.336372
CGGAGTCATCTCTTCATAAGGGATC
60.336
48.000
0.00
0.00
45.57
3.36
3316
3922
5.789643
TTCTTTGGGAAATTTCCTCACTG
57.210
39.130
31.23
21.05
46.72
3.66
3342
3948
7.118971
GCAGAATTGTGAAGAGAGTAAACTGAT
59.881
37.037
6.80
0.00
0.00
2.90
3354
3960
4.823442
AGTTCATGTGCAGAATTGTGAAGA
59.177
37.500
6.80
0.00
0.00
2.87
3358
3964
2.984471
GCAGTTCATGTGCAGAATTGTG
59.016
45.455
10.14
0.00
40.86
3.33
3415
4021
0.603975
GGCAGCTCGAAGGAACAACT
60.604
55.000
0.00
0.00
0.00
3.16
3481
4087
3.511477
AGTAAACTCAGGCCTCTTCTCA
58.489
45.455
0.00
0.00
0.00
3.27
3684
4299
2.224159
GGGAGGAAGAGGGCACACA
61.224
63.158
0.00
0.00
0.00
3.72
3762
4377
3.118884
AGGTGTGTCTCGTGTAGTTTGTT
60.119
43.478
0.00
0.00
0.00
2.83
3824
4439
6.887545
TGGTTTTTCTTCTAAAACAGAGTCCA
59.112
34.615
12.37
0.30
45.41
4.02
3854
4470
8.202745
ACAATCAAGATTTCGTCTATTCTTCC
57.797
34.615
0.00
0.00
35.67
3.46
3886
4502
6.402658
GGCAGAAGTCAAGTTTTAGCTGATAC
60.403
42.308
0.00
0.00
0.00
2.24
3887
4503
5.643777
GGCAGAAGTCAAGTTTTAGCTGATA
59.356
40.000
0.00
0.00
0.00
2.15
3888
4504
4.457257
GGCAGAAGTCAAGTTTTAGCTGAT
59.543
41.667
0.00
0.00
0.00
2.90
3991
4875
8.557029
CCTTCTTGTCGTCAAACTTACTTAATT
58.443
33.333
0.00
0.00
32.87
1.40
4013
4941
4.869215
GGAACCTTAGTATACGAGCCTTC
58.131
47.826
0.00
4.12
0.00
3.46
4044
5083
1.263217
GCACCTACAAGTGTTTCCACG
59.737
52.381
0.00
0.00
46.56
4.94
4060
5099
1.848652
TCTAGGTCCACTACTGCACC
58.151
55.000
0.00
0.00
0.00
5.01
4090
5151
3.051479
GTAAACCGTGGCACCCCG
61.051
66.667
12.86
0.00
0.00
5.73
4198
5271
9.796120
TTTTCTGACTTTTTGTTACAACTATGG
57.204
29.630
0.00
0.00
0.00
2.74
4214
5287
6.903419
GCAGTTTAGTGCTATTTTCTGACTT
58.097
36.000
2.34
0.00
40.54
3.01
4246
5319
4.630069
CCTGCACTATGTACTTAACACCAC
59.370
45.833
0.00
0.00
42.09
4.16
4265
5338
6.268566
CCTCTAAAATTGCAAGATAACCTGC
58.731
40.000
4.94
0.00
0.00
4.85
4274
5347
2.094026
GCACCCCCTCTAAAATTGCAAG
60.094
50.000
4.94
0.00
0.00
4.01
4280
5353
0.335019
GGTGGCACCCCCTCTAAAAT
59.665
55.000
26.51
0.00
30.04
1.82
4336
5410
2.281484
TGGCACGGGAACAAGAGC
60.281
61.111
0.00
0.00
0.00
4.09
4617
5692
3.454375
CACCGACCATAGTGACCAATAC
58.546
50.000
0.00
0.00
36.01
1.89
4618
5693
2.432874
CCACCGACCATAGTGACCAATA
59.567
50.000
0.00
0.00
36.01
1.90
4619
5694
1.209504
CCACCGACCATAGTGACCAAT
59.790
52.381
0.00
0.00
36.01
3.16
4627
5782
3.685139
AGCATATTCCACCGACCATAG
57.315
47.619
0.00
0.00
0.00
2.23
4629
5784
2.951642
CAAAGCATATTCCACCGACCAT
59.048
45.455
0.00
0.00
0.00
3.55
4660
5815
0.391793
TCATATCAACGCGGCAACCA
60.392
50.000
12.47
0.00
0.00
3.67
4661
5816
0.304705
CTCATATCAACGCGGCAACC
59.695
55.000
12.47
0.00
0.00
3.77
4662
5817
0.304705
CCTCATATCAACGCGGCAAC
59.695
55.000
12.47
0.00
0.00
4.17
4663
5818
0.813610
CCCTCATATCAACGCGGCAA
60.814
55.000
12.47
0.00
0.00
4.52
4664
5819
1.227527
CCCTCATATCAACGCGGCA
60.228
57.895
12.47
0.00
0.00
5.69
4665
5820
3.642755
CCCTCATATCAACGCGGC
58.357
61.111
12.47
0.00
0.00
6.53
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.