Multiple sequence alignment - TraesCS1D01G341300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G341300 chr1D 100.000 7098 0 0 1 7098 431433894 431426797 0.000000e+00 13108.0
1 TraesCS1D01G341300 chr1D 87.186 398 46 5 1 397 110771699 110771306 1.400000e-121 448.0
2 TraesCS1D01G341300 chr1D 86.634 404 40 10 1 397 399776408 399776804 1.090000e-117 435.0
3 TraesCS1D01G341300 chr1D 96.154 104 4 0 5370 5473 431428489 431428386 3.400000e-38 171.0
4 TraesCS1D01G341300 chr1D 96.154 104 4 0 5406 5509 431428525 431428422 3.400000e-38 171.0
5 TraesCS1D01G341300 chr1D 81.159 138 24 2 6685 6821 357215056 357214920 7.530000e-20 110.0
6 TraesCS1D01G341300 chr1D 95.522 67 3 0 5371 5437 431428452 431428386 2.710000e-19 108.0
7 TraesCS1D01G341300 chr1D 95.522 67 3 0 5443 5509 431428524 431428458 2.710000e-19 108.0
8 TraesCS1D01G341300 chr1D 86.207 87 10 1 6013 6097 431427735 431427649 7.580000e-15 93.5
9 TraesCS1D01G341300 chr1D 86.207 87 10 1 6160 6246 431427882 431427798 7.580000e-15 93.5
10 TraesCS1D01G341300 chr1B 95.655 4879 160 13 2238 7098 582549552 582544708 0.000000e+00 7788.0
11 TraesCS1D01G341300 chr1B 92.075 1716 77 28 747 2433 582551238 582549553 0.000000e+00 2361.0
12 TraesCS1D01G341300 chr1B 96.226 106 4 0 5370 5475 582546381 582546276 2.630000e-39 174.0
13 TraesCS1D01G341300 chr1B 93.636 110 7 0 5406 5515 582546417 582546308 1.580000e-36 165.0
14 TraesCS1D01G341300 chr1B 98.551 69 1 0 5371 5439 582546344 582546276 9.670000e-24 122.0
15 TraesCS1D01G341300 chr1B 92.537 67 5 0 5443 5509 582546416 582546350 5.860000e-16 97.1
16 TraesCS1D01G341300 chr1B 85.057 87 11 1 6013 6097 582545641 582545555 3.530000e-13 87.9
17 TraesCS1D01G341300 chr1B 85.057 87 11 1 6160 6246 582545788 582545704 3.530000e-13 87.9
18 TraesCS1D01G341300 chr1A 96.154 4420 132 11 2693 7098 529669519 529665124 0.000000e+00 7186.0
19 TraesCS1D01G341300 chr1A 92.119 1954 81 29 802 2703 529671479 529669547 0.000000e+00 2687.0
20 TraesCS1D01G341300 chr1A 86.935 398 48 3 1 397 530148508 530148902 1.820000e-120 444.0
21 TraesCS1D01G341300 chr1A 98.113 106 2 0 5370 5475 529666807 529666702 1.220000e-42 185.0
22 TraesCS1D01G341300 chr1A 96.154 104 4 0 5406 5509 529666843 529666740 3.400000e-38 171.0
23 TraesCS1D01G341300 chr1A 77.640 322 24 19 403 697 529672412 529672112 1.230000e-32 152.0
24 TraesCS1D01G341300 chr1A 97.143 70 2 0 5370 5439 529666771 529666702 1.250000e-22 119.0
25 TraesCS1D01G341300 chr1A 81.159 138 24 2 6685 6821 458396960 458396824 7.530000e-20 110.0
26 TraesCS1D01G341300 chr1A 93.151 73 5 0 5443 5515 529666842 529666770 2.710000e-19 108.0
27 TraesCS1D01G341300 chr1A 85.057 87 11 1 6160 6246 529666201 529666117 3.530000e-13 87.9
28 TraesCS1D01G341300 chr1A 97.561 41 0 1 691 731 529671536 529671497 1.280000e-07 69.4
29 TraesCS1D01G341300 chr5B 86.326 841 92 14 4577 5405 106148870 106149699 0.000000e+00 894.0
30 TraesCS1D01G341300 chr5B 81.214 346 49 12 5477 5810 106149660 106150001 1.520000e-66 265.0
31 TraesCS1D01G341300 chr2D 94.553 514 24 2 3582 4093 99684745 99685256 0.000000e+00 791.0
32 TraesCS1D01G341300 chr2D 88.221 399 41 5 1 397 495748897 495748503 8.330000e-129 472.0
33 TraesCS1D01G341300 chr3D 94.958 476 24 0 3582 4057 560196302 560195827 0.000000e+00 747.0
34 TraesCS1D01G341300 chr3D 87.940 398 45 2 1 397 118422978 118422583 3.880000e-127 466.0
35 TraesCS1D01G341300 chr3D 88.032 376 45 0 1 376 317194945 317195320 5.050000e-121 446.0
36 TraesCS1D01G341300 chr3D 78.009 432 85 9 6658 7086 391598590 391599014 5.460000e-66 263.0
37 TraesCS1D01G341300 chr3D 86.111 216 25 4 6613 6827 378032711 378032922 1.990000e-55 228.0
38 TraesCS1D01G341300 chr3D 95.122 82 4 0 4012 4093 560195824 560195743 5.780000e-26 130.0
39 TraesCS1D01G341300 chr5D 88.442 398 43 2 1 397 84260701 84260306 1.790000e-130 477.0
40 TraesCS1D01G341300 chr6D 86.432 398 45 7 1 397 437414970 437415359 1.830000e-115 427.0
41 TraesCS1D01G341300 chr4D 86.216 399 46 6 1 397 47501484 47501093 2.370000e-114 424.0
42 TraesCS1D01G341300 chr3A 77.825 469 93 11 6622 7086 511753865 511754326 5.420000e-71 279.0
43 TraesCS1D01G341300 chr3A 86.111 216 25 4 6613 6827 502165823 502166034 1.990000e-55 228.0
44 TraesCS1D01G341300 chr3A 88.095 126 13 2 6697 6821 56592001 56591877 1.600000e-31 148.0
45 TraesCS1D01G341300 chr3B 78.241 432 84 9 6658 7086 508709047 508709471 1.170000e-67 268.0
46 TraesCS1D01G341300 chr3B 85.507 207 27 3 6613 6818 492611184 492611388 5.580000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G341300 chr1D 431426797 431433894 7097 True 13108.000000 13108 100.000000 1 7098 1 chr1D.!!$R3 7097
1 TraesCS1D01G341300 chr1B 582544708 582551238 6530 True 1360.362500 7788 92.349250 747 7098 8 chr1B.!!$R1 6351
2 TraesCS1D01G341300 chr1A 529665124 529672412 7288 True 1196.144444 7186 92.565778 403 7098 9 chr1A.!!$R2 6695
3 TraesCS1D01G341300 chr5B 106148870 106150001 1131 False 579.500000 894 83.770000 4577 5810 2 chr5B.!!$F1 1233
4 TraesCS1D01G341300 chr2D 99684745 99685256 511 False 791.000000 791 94.553000 3582 4093 1 chr2D.!!$F1 511
5 TraesCS1D01G341300 chr3D 560195743 560196302 559 True 438.500000 747 95.040000 3582 4093 2 chr3D.!!$R2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.028374 AAACGAACAAAAGGCGGACG 59.972 50.0 0.00 0.0 0.00 4.79 F
745 1352 0.039911 AGAGCCCAGACCTAACTCGT 59.960 55.0 0.00 0.0 32.60 4.18 F
1701 2347 0.178767 ACCAAGCTCGCATCTGCATA 59.821 50.0 2.72 0.0 42.21 3.14 F
2012 2668 0.183492 TTCAGCATCTATGGGTGGCC 59.817 55.0 0.00 0.0 34.64 5.36 F
3118 4035 0.776451 CGTGTCCGTCAAAGTCTTCG 59.224 55.0 0.00 0.0 0.00 3.79 F
3514 4431 0.183492 TTGCTCAAAGGTCTGCTGGT 59.817 50.0 0.00 0.0 0.00 4.00 F
5097 6071 0.320247 GCACGGCCTCATGGATCTAG 60.320 60.0 0.00 0.0 34.57 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 2290 0.238553 GCACCTTTTTCCTCGCACTC 59.761 55.000 0.00 0.00 0.00 3.51 R
2649 3527 0.169230 ACACTGCGACGTTTTGCAAA 59.831 45.000 8.05 8.05 41.91 3.68 R
2651 3529 1.007580 TTACACTGCGACGTTTTGCA 58.992 45.000 10.09 10.09 40.09 4.08 R
3504 4421 2.152016 GGAAGTTAACACCAGCAGACC 58.848 52.381 8.61 0.00 0.00 3.85 R
4542 5511 0.813184 AAATGTTGCAGCGGGATCAG 59.187 50.000 0.00 0.00 0.00 2.90 R
5464 6442 1.228657 GCCCACTGTTGAGACGAACC 61.229 60.000 0.00 0.00 0.00 3.62 R
6261 7252 0.036765 GGCTTCGTATCACCACCACA 60.037 55.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.667539 TTTGAACAGTTCACCCAATTTCA 57.332 34.783 15.93 0.00 39.87 2.69
23 24 5.867903 TTGAACAGTTCACCCAATTTCAT 57.132 34.783 15.93 0.00 39.87 2.57
24 25 5.199024 TGAACAGTTCACCCAATTTCATG 57.801 39.130 12.24 0.00 34.08 3.07
25 26 4.892345 TGAACAGTTCACCCAATTTCATGA 59.108 37.500 12.24 0.00 34.08 3.07
26 27 5.362143 TGAACAGTTCACCCAATTTCATGAA 59.638 36.000 12.24 3.38 34.08 2.57
27 28 5.458041 ACAGTTCACCCAATTTCATGAAG 57.542 39.130 8.41 0.00 31.94 3.02
28 29 5.139727 ACAGTTCACCCAATTTCATGAAGA 58.860 37.500 8.41 0.72 31.94 2.87
29 30 5.010012 ACAGTTCACCCAATTTCATGAAGAC 59.990 40.000 8.41 0.00 31.94 3.01
30 31 5.009911 CAGTTCACCCAATTTCATGAAGACA 59.990 40.000 8.41 0.00 31.94 3.41
31 32 5.776716 AGTTCACCCAATTTCATGAAGACAT 59.223 36.000 8.41 0.00 37.19 3.06
42 43 3.936661 CATGAAGACATGCGTGATTGAG 58.063 45.455 14.17 0.00 45.51 3.02
43 44 3.317603 TGAAGACATGCGTGATTGAGA 57.682 42.857 14.17 0.00 0.00 3.27
44 45 3.663025 TGAAGACATGCGTGATTGAGAA 58.337 40.909 14.17 0.00 0.00 2.87
45 46 4.064388 TGAAGACATGCGTGATTGAGAAA 58.936 39.130 14.17 0.00 0.00 2.52
46 47 4.083855 TGAAGACATGCGTGATTGAGAAAC 60.084 41.667 14.17 0.00 0.00 2.78
47 48 3.668447 AGACATGCGTGATTGAGAAACT 58.332 40.909 14.17 0.00 0.00 2.66
48 49 3.681897 AGACATGCGTGATTGAGAAACTC 59.318 43.478 14.17 0.00 0.00 3.01
49 50 3.402110 ACATGCGTGATTGAGAAACTCA 58.598 40.909 14.17 0.00 38.87 3.41
50 51 3.187227 ACATGCGTGATTGAGAAACTCAC 59.813 43.478 14.17 0.00 40.46 3.51
56 57 5.011451 GTGATTGAGAAACTCACGTTCAG 57.989 43.478 0.74 0.00 40.46 3.02
57 58 3.494626 TGATTGAGAAACTCACGTTCAGC 59.505 43.478 0.74 0.00 40.46 4.26
58 59 2.890808 TGAGAAACTCACGTTCAGCT 57.109 45.000 0.00 0.00 35.39 4.24
59 60 2.473816 TGAGAAACTCACGTTCAGCTG 58.526 47.619 7.63 7.63 35.39 4.24
60 61 1.193426 GAGAAACTCACGTTCAGCTGC 59.807 52.381 9.47 0.00 31.66 5.25
61 62 0.937304 GAAACTCACGTTCAGCTGCA 59.063 50.000 9.47 0.00 31.66 4.41
62 63 1.330521 GAAACTCACGTTCAGCTGCAA 59.669 47.619 9.47 1.36 31.66 4.08
63 64 1.378531 AACTCACGTTCAGCTGCAAA 58.621 45.000 9.47 0.00 0.00 3.68
64 65 1.378531 ACTCACGTTCAGCTGCAAAA 58.621 45.000 9.47 0.00 0.00 2.44
65 66 1.949525 ACTCACGTTCAGCTGCAAAAT 59.050 42.857 9.47 0.00 0.00 1.82
66 67 2.287188 ACTCACGTTCAGCTGCAAAATG 60.287 45.455 9.47 6.57 0.00 2.32
67 68 1.946081 TCACGTTCAGCTGCAAAATGA 59.054 42.857 9.47 6.14 0.00 2.57
68 69 2.553602 TCACGTTCAGCTGCAAAATGAT 59.446 40.909 9.47 0.00 0.00 2.45
69 70 3.004629 TCACGTTCAGCTGCAAAATGATT 59.995 39.130 9.47 0.00 0.00 2.57
70 71 3.737266 CACGTTCAGCTGCAAAATGATTT 59.263 39.130 9.47 0.00 0.00 2.17
72 73 3.122278 CGTTCAGCTGCAAAATGATTTGG 59.878 43.478 9.47 0.00 44.93 3.28
73 74 4.060205 GTTCAGCTGCAAAATGATTTGGT 58.940 39.130 9.47 0.00 44.93 3.67
74 75 4.339872 TCAGCTGCAAAATGATTTGGTT 57.660 36.364 9.47 0.00 44.93 3.67
75 76 4.059511 TCAGCTGCAAAATGATTTGGTTG 58.940 39.130 9.47 0.00 44.93 3.77
76 77 4.059511 CAGCTGCAAAATGATTTGGTTGA 58.940 39.130 0.00 0.00 44.93 3.18
77 78 4.151689 CAGCTGCAAAATGATTTGGTTGAG 59.848 41.667 0.00 0.00 44.93 3.02
78 79 3.120442 GCTGCAAAATGATTTGGTTGAGC 60.120 43.478 0.00 0.00 44.93 4.26
79 80 4.059511 CTGCAAAATGATTTGGTTGAGCA 58.940 39.130 0.00 0.00 44.93 4.26
80 81 4.643463 TGCAAAATGATTTGGTTGAGCAT 58.357 34.783 0.00 0.00 44.93 3.79
81 82 5.791666 TGCAAAATGATTTGGTTGAGCATA 58.208 33.333 0.00 0.00 44.93 3.14
82 83 6.408035 TGCAAAATGATTTGGTTGAGCATAT 58.592 32.000 0.00 0.00 44.93 1.78
83 84 6.314152 TGCAAAATGATTTGGTTGAGCATATG 59.686 34.615 0.00 0.00 44.93 1.78
84 85 6.314400 GCAAAATGATTTGGTTGAGCATATGT 59.686 34.615 4.29 0.00 44.93 2.29
85 86 7.675403 GCAAAATGATTTGGTTGAGCATATGTG 60.675 37.037 4.29 0.00 44.93 3.21
86 87 4.987408 TGATTTGGTTGAGCATATGTGG 57.013 40.909 4.29 0.00 0.00 4.17
87 88 3.700539 TGATTTGGTTGAGCATATGTGGG 59.299 43.478 4.29 0.00 0.00 4.61
88 89 1.473258 TTGGTTGAGCATATGTGGGC 58.527 50.000 4.29 0.00 0.00 5.36
89 90 0.625316 TGGTTGAGCATATGTGGGCT 59.375 50.000 4.29 0.00 44.48 5.19
95 96 2.742428 AGCATATGTGGGCTCATGTT 57.258 45.000 4.29 0.00 34.76 2.71
96 97 2.304092 AGCATATGTGGGCTCATGTTG 58.696 47.619 4.29 0.00 34.76 3.33
97 98 1.338973 GCATATGTGGGCTCATGTTGG 59.661 52.381 4.29 0.00 0.00 3.77
98 99 1.338973 CATATGTGGGCTCATGTTGGC 59.661 52.381 0.00 0.00 0.00 4.52
99 100 0.625316 TATGTGGGCTCATGTTGGCT 59.375 50.000 12.67 0.00 0.00 4.75
100 101 0.625316 ATGTGGGCTCATGTTGGCTA 59.375 50.000 12.67 6.13 0.00 3.93
101 102 0.625316 TGTGGGCTCATGTTGGCTAT 59.375 50.000 12.67 0.00 0.00 2.97
102 103 1.312815 GTGGGCTCATGTTGGCTATC 58.687 55.000 12.67 1.01 0.00 2.08
103 104 0.918258 TGGGCTCATGTTGGCTATCA 59.082 50.000 12.67 0.00 0.00 2.15
104 105 1.284491 TGGGCTCATGTTGGCTATCAA 59.716 47.619 12.67 0.00 0.00 2.57
105 106 2.091720 TGGGCTCATGTTGGCTATCAAT 60.092 45.455 12.67 0.00 37.73 2.57
106 107 3.138098 TGGGCTCATGTTGGCTATCAATA 59.862 43.478 12.67 0.00 37.73 1.90
107 108 3.755378 GGGCTCATGTTGGCTATCAATAG 59.245 47.826 12.67 0.00 37.73 1.73
108 109 4.505566 GGGCTCATGTTGGCTATCAATAGA 60.506 45.833 12.67 0.00 37.73 1.98
109 110 5.251764 GGCTCATGTTGGCTATCAATAGAT 58.748 41.667 1.15 0.00 37.73 1.98
110 111 5.123502 GGCTCATGTTGGCTATCAATAGATG 59.876 44.000 1.15 0.00 37.73 2.90
111 112 5.391736 GCTCATGTTGGCTATCAATAGATGC 60.392 44.000 1.15 0.00 37.73 3.91
112 113 5.623169 TCATGTTGGCTATCAATAGATGCA 58.377 37.500 1.15 0.00 37.73 3.96
113 114 6.243148 TCATGTTGGCTATCAATAGATGCAT 58.757 36.000 0.00 0.00 37.73 3.96
114 115 6.373495 TCATGTTGGCTATCAATAGATGCATC 59.627 38.462 19.37 19.37 37.73 3.91
115 116 5.872963 TGTTGGCTATCAATAGATGCATCT 58.127 37.500 30.85 30.85 40.86 2.90
116 117 6.301486 TGTTGGCTATCAATAGATGCATCTT 58.699 36.000 32.94 17.76 38.32 2.40
117 118 6.429078 TGTTGGCTATCAATAGATGCATCTTC 59.571 38.462 32.94 6.05 38.32 2.87
118 119 6.370186 TGGCTATCAATAGATGCATCTTCT 57.630 37.500 32.94 18.49 38.32 2.85
119 120 6.776744 TGGCTATCAATAGATGCATCTTCTT 58.223 36.000 32.94 22.73 38.32 2.52
120 121 7.229308 TGGCTATCAATAGATGCATCTTCTTT 58.771 34.615 32.94 20.59 38.32 2.52
121 122 7.722728 TGGCTATCAATAGATGCATCTTCTTTT 59.277 33.333 32.94 18.34 38.32 2.27
122 123 9.224267 GGCTATCAATAGATGCATCTTCTTTTA 57.776 33.333 32.94 15.41 38.32 1.52
127 128 9.330063 TCAATAGATGCATCTTCTTTTATTCGT 57.670 29.630 32.94 7.94 38.32 3.85
128 129 9.941664 CAATAGATGCATCTTCTTTTATTCGTT 57.058 29.630 32.94 7.50 38.32 3.85
130 131 9.941664 ATAGATGCATCTTCTTTTATTCGTTTG 57.058 29.630 32.94 0.00 38.32 2.93
131 132 6.749118 AGATGCATCTTCTTTTATTCGTTTGC 59.251 34.615 23.75 0.00 31.97 3.68
132 133 5.767269 TGCATCTTCTTTTATTCGTTTGCA 58.233 33.333 0.00 0.00 34.33 4.08
133 134 6.212235 TGCATCTTCTTTTATTCGTTTGCAA 58.788 32.000 0.00 0.00 33.85 4.08
134 135 6.699204 TGCATCTTCTTTTATTCGTTTGCAAA 59.301 30.769 8.05 8.05 33.85 3.68
135 136 7.223582 TGCATCTTCTTTTATTCGTTTGCAAAA 59.776 29.630 14.67 0.00 33.85 2.44
136 137 7.527183 GCATCTTCTTTTATTCGTTTGCAAAAC 59.473 33.333 14.67 7.51 0.00 2.43
137 138 8.755018 CATCTTCTTTTATTCGTTTGCAAAACT 58.245 29.630 14.67 1.52 0.00 2.66
138 139 9.959749 ATCTTCTTTTATTCGTTTGCAAAACTA 57.040 25.926 14.67 2.05 0.00 2.24
139 140 9.959749 TCTTCTTTTATTCGTTTGCAAAACTAT 57.040 25.926 14.67 9.56 0.00 2.12
140 141 9.993881 CTTCTTTTATTCGTTTGCAAAACTATG 57.006 29.630 14.67 0.00 0.00 2.23
141 142 9.522804 TTCTTTTATTCGTTTGCAAAACTATGT 57.477 25.926 14.67 1.14 0.00 2.29
142 143 8.963130 TCTTTTATTCGTTTGCAAAACTATGTG 58.037 29.630 14.67 0.46 0.00 3.21
143 144 8.858003 TTTTATTCGTTTGCAAAACTATGTGA 57.142 26.923 14.67 0.94 0.00 3.58
144 145 8.858003 TTTATTCGTTTGCAAAACTATGTGAA 57.142 26.923 14.67 9.56 0.00 3.18
145 146 8.858003 TTATTCGTTTGCAAAACTATGTGAAA 57.142 26.923 14.67 0.00 0.00 2.69
146 147 6.561945 TTCGTTTGCAAAACTATGTGAAAC 57.438 33.333 14.67 0.00 37.35 2.78
214 215 9.967346 TTCGGTTTATTTGACAATATGTTTGAA 57.033 25.926 0.00 0.00 0.00 2.69
247 248 9.944663 TTATCATTATAAAATTGAACGGTCAGC 57.055 29.630 2.09 0.00 34.49 4.26
248 249 7.624360 TCATTATAAAATTGAACGGTCAGCT 57.376 32.000 2.09 0.00 34.49 4.24
249 250 7.471721 TCATTATAAAATTGAACGGTCAGCTG 58.528 34.615 7.63 7.63 34.49 4.24
250 251 4.701956 ATAAAATTGAACGGTCAGCTGG 57.298 40.909 15.13 0.00 34.49 4.85
251 252 1.981256 AAATTGAACGGTCAGCTGGT 58.019 45.000 15.13 0.27 34.49 4.00
252 253 1.523758 AATTGAACGGTCAGCTGGTC 58.476 50.000 15.13 7.56 38.19 4.02
253 254 0.396435 ATTGAACGGTCAGCTGGTCA 59.604 50.000 15.13 7.31 45.27 4.02
254 255 0.531974 TTGAACGGTCAGCTGGTCAC 60.532 55.000 15.13 4.51 46.47 3.67
255 256 2.022129 GAACGGTCAGCTGGTCACG 61.022 63.158 15.13 15.14 37.63 4.35
256 257 4.664677 ACGGTCAGCTGGTCACGC 62.665 66.667 15.13 0.00 0.00 5.34
264 265 2.108976 CTGGTCACGCCGGCATAT 59.891 61.111 28.98 8.36 41.21 1.78
265 266 1.365999 CTGGTCACGCCGGCATATA 59.634 57.895 28.98 5.32 41.21 0.86
266 267 0.944311 CTGGTCACGCCGGCATATAC 60.944 60.000 28.98 17.70 41.21 1.47
267 268 2.019951 GGTCACGCCGGCATATACG 61.020 63.158 28.98 11.60 0.00 3.06
274 275 4.546637 CGGCATATACGGGTCGAC 57.453 61.111 7.13 7.13 33.12 4.20
275 276 1.441515 CGGCATATACGGGTCGACG 60.442 63.158 9.92 1.01 33.12 5.12
276 277 1.731969 GGCATATACGGGTCGACGC 60.732 63.158 21.72 21.72 37.37 5.19
277 278 1.731969 GCATATACGGGTCGACGCC 60.732 63.158 24.89 17.97 37.37 5.68
278 279 1.954528 CATATACGGGTCGACGCCT 59.045 57.895 24.89 16.74 37.37 5.52
279 280 0.313043 CATATACGGGTCGACGCCTT 59.687 55.000 24.89 15.34 37.37 4.35
280 281 0.313043 ATATACGGGTCGACGCCTTG 59.687 55.000 24.89 14.53 37.37 3.61
281 282 1.727511 TATACGGGTCGACGCCTTGG 61.728 60.000 24.89 14.19 37.37 3.61
294 295 4.389576 CTTGGACGCGCTGCCAAC 62.390 66.667 22.05 1.32 39.14 3.77
299 300 4.402528 ACGCGCTGCCAACCCATA 62.403 61.111 5.73 0.00 0.00 2.74
300 301 2.901840 CGCGCTGCCAACCCATAT 60.902 61.111 5.56 0.00 0.00 1.78
301 302 2.480610 CGCGCTGCCAACCCATATT 61.481 57.895 5.56 0.00 0.00 1.28
302 303 1.163420 CGCGCTGCCAACCCATATTA 61.163 55.000 5.56 0.00 0.00 0.98
303 304 1.028905 GCGCTGCCAACCCATATTAA 58.971 50.000 0.00 0.00 0.00 1.40
304 305 1.407258 GCGCTGCCAACCCATATTAAA 59.593 47.619 0.00 0.00 0.00 1.52
305 306 2.159170 GCGCTGCCAACCCATATTAAAA 60.159 45.455 0.00 0.00 0.00 1.52
306 307 3.677424 GCGCTGCCAACCCATATTAAAAA 60.677 43.478 0.00 0.00 0.00 1.94
307 308 3.862845 CGCTGCCAACCCATATTAAAAAC 59.137 43.478 0.00 0.00 0.00 2.43
308 309 4.619394 CGCTGCCAACCCATATTAAAAACA 60.619 41.667 0.00 0.00 0.00 2.83
309 310 4.869861 GCTGCCAACCCATATTAAAAACAG 59.130 41.667 0.00 0.00 0.00 3.16
310 311 5.413309 TGCCAACCCATATTAAAAACAGG 57.587 39.130 0.00 0.00 0.00 4.00
311 312 5.087323 TGCCAACCCATATTAAAAACAGGA 58.913 37.500 0.00 0.00 0.00 3.86
312 313 5.046950 TGCCAACCCATATTAAAAACAGGAC 60.047 40.000 0.00 0.00 0.00 3.85
313 314 5.646606 CCAACCCATATTAAAAACAGGACG 58.353 41.667 0.00 0.00 0.00 4.79
314 315 5.393678 CCAACCCATATTAAAAACAGGACGG 60.394 44.000 0.00 0.00 0.00 4.79
315 316 5.182169 ACCCATATTAAAAACAGGACGGA 57.818 39.130 0.00 0.00 0.00 4.69
316 317 4.945543 ACCCATATTAAAAACAGGACGGAC 59.054 41.667 0.00 0.00 0.00 4.79
317 318 4.034742 CCCATATTAAAAACAGGACGGACG 59.965 45.833 0.00 0.00 0.00 4.79
318 319 4.495184 CCATATTAAAAACAGGACGGACGC 60.495 45.833 0.00 0.00 0.00 5.19
319 320 2.243602 TTAAAAACAGGACGGACGCT 57.756 45.000 0.00 0.00 0.00 5.07
320 321 1.504359 TAAAAACAGGACGGACGCTG 58.496 50.000 0.00 0.00 0.00 5.18
321 322 1.164041 AAAAACAGGACGGACGCTGG 61.164 55.000 4.78 0.00 0.00 4.85
322 323 3.530910 AAACAGGACGGACGCTGGG 62.531 63.158 4.78 0.00 0.00 4.45
342 343 4.668118 GACGGCCGACCCAAACGA 62.668 66.667 35.90 0.00 0.00 3.85
343 344 4.238654 ACGGCCGACCCAAACGAA 62.239 61.111 35.90 0.00 0.00 3.85
344 345 3.719144 CGGCCGACCCAAACGAAC 61.719 66.667 24.07 0.00 0.00 3.95
345 346 2.592287 GGCCGACCCAAACGAACA 60.592 61.111 0.00 0.00 0.00 3.18
346 347 2.188161 GGCCGACCCAAACGAACAA 61.188 57.895 0.00 0.00 0.00 2.83
347 348 1.726533 GGCCGACCCAAACGAACAAA 61.727 55.000 0.00 0.00 0.00 2.83
348 349 0.100861 GCCGACCCAAACGAACAAAA 59.899 50.000 0.00 0.00 0.00 2.44
349 350 1.862411 GCCGACCCAAACGAACAAAAG 60.862 52.381 0.00 0.00 0.00 2.27
350 351 1.268845 CCGACCCAAACGAACAAAAGG 60.269 52.381 0.00 0.00 0.00 3.11
351 352 1.847818 GACCCAAACGAACAAAAGGC 58.152 50.000 0.00 0.00 0.00 4.35
352 353 0.101579 ACCCAAACGAACAAAAGGCG 59.898 50.000 0.00 0.00 0.00 5.52
353 354 0.596341 CCCAAACGAACAAAAGGCGG 60.596 55.000 0.00 0.00 0.00 6.13
354 355 0.382515 CCAAACGAACAAAAGGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
355 356 1.472990 CAAACGAACAAAAGGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
356 357 0.028374 AAACGAACAAAAGGCGGACG 59.972 50.000 0.00 0.00 0.00 4.79
357 358 0.810823 AACGAACAAAAGGCGGACGA 60.811 50.000 0.00 0.00 0.00 4.20
358 359 0.810823 ACGAACAAAAGGCGGACGAA 60.811 50.000 0.00 0.00 0.00 3.85
359 360 0.305313 CGAACAAAAGGCGGACGAAA 59.695 50.000 0.00 0.00 0.00 3.46
360 361 1.069500 CGAACAAAAGGCGGACGAAAT 60.069 47.619 0.00 0.00 0.00 2.17
361 362 2.581637 GAACAAAAGGCGGACGAAATC 58.418 47.619 0.00 0.00 0.00 2.17
362 363 0.515564 ACAAAAGGCGGACGAAATCG 59.484 50.000 0.48 0.48 46.33 3.34
368 369 2.394136 CGGACGAAATCGCCGTTG 59.606 61.111 21.85 4.03 46.11 4.10
369 370 2.782615 GGACGAAATCGCCGTTGG 59.217 61.111 2.15 0.00 44.43 3.77
370 371 2.030958 GGACGAAATCGCCGTTGGT 61.031 57.895 2.15 0.00 44.43 3.67
371 372 1.571215 GGACGAAATCGCCGTTGGTT 61.571 55.000 2.15 0.00 44.43 3.67
372 373 0.236449 GACGAAATCGCCGTTGGTTT 59.764 50.000 2.15 0.00 44.43 3.27
373 374 0.040781 ACGAAATCGCCGTTGGTTTG 60.041 50.000 2.15 0.00 44.43 2.93
374 375 0.727793 CGAAATCGCCGTTGGTTTGG 60.728 55.000 0.00 0.00 0.00 3.28
375 376 0.388006 GAAATCGCCGTTGGTTTGGG 60.388 55.000 0.00 0.00 0.00 4.12
376 377 1.110518 AAATCGCCGTTGGTTTGGGT 61.111 50.000 0.00 0.00 0.00 4.51
377 378 1.520600 AATCGCCGTTGGTTTGGGTC 61.521 55.000 0.00 0.00 0.00 4.46
378 379 4.020378 CGCCGTTGGTTTGGGTCG 62.020 66.667 0.00 0.00 0.00 4.79
379 380 4.337060 GCCGTTGGTTTGGGTCGC 62.337 66.667 0.00 0.00 0.00 5.19
380 381 3.666253 CCGTTGGTTTGGGTCGCC 61.666 66.667 0.00 0.00 0.00 5.54
381 382 3.666253 CGTTGGTTTGGGTCGCCC 61.666 66.667 7.87 7.87 45.71 6.13
390 391 3.917760 GGGTCGCCCATCGGAGAG 61.918 72.222 9.72 0.00 44.65 3.20
391 392 3.148279 GGTCGCCCATCGGAGAGT 61.148 66.667 0.00 0.00 43.63 3.24
392 393 2.722201 GGTCGCCCATCGGAGAGTT 61.722 63.158 0.00 0.00 43.63 3.01
393 394 1.519455 GTCGCCCATCGGAGAGTTG 60.519 63.158 0.00 0.00 43.63 3.16
394 395 2.892425 CGCCCATCGGAGAGTTGC 60.892 66.667 0.00 0.00 43.63 4.17
395 396 2.586792 GCCCATCGGAGAGTTGCT 59.413 61.111 0.00 0.00 43.63 3.91
396 397 1.522580 GCCCATCGGAGAGTTGCTC 60.523 63.158 0.00 0.00 43.63 4.26
397 398 1.900351 CCCATCGGAGAGTTGCTCA 59.100 57.895 0.00 0.00 45.81 4.26
398 399 0.179089 CCCATCGGAGAGTTGCTCAG 60.179 60.000 0.00 0.00 45.81 3.35
399 400 0.179089 CCATCGGAGAGTTGCTCAGG 60.179 60.000 0.00 0.00 45.81 3.86
400 401 0.534412 CATCGGAGAGTTGCTCAGGT 59.466 55.000 0.00 0.00 45.81 4.00
401 402 1.066573 CATCGGAGAGTTGCTCAGGTT 60.067 52.381 0.00 0.00 45.81 3.50
429 430 4.896028 AGTCAGAGATCGCGCGCG 62.896 66.667 44.84 44.84 41.35 6.86
450 451 3.240684 GCACATGCATTTACTCGCC 57.759 52.632 0.00 0.00 41.59 5.54
505 515 1.593787 CTGGCTCACAGTCGGTCAT 59.406 57.895 0.00 0.00 42.42 3.06
510 520 2.263077 GCTCACAGTCGGTCATTACTG 58.737 52.381 0.00 0.00 46.84 2.74
512 522 1.616374 TCACAGTCGGTCATTACTGCA 59.384 47.619 2.52 0.00 45.65 4.41
514 524 2.413112 CACAGTCGGTCATTACTGCAAG 59.587 50.000 2.52 0.00 45.65 4.01
534 544 3.933722 CGGGCGGGATCAGCTGAT 61.934 66.667 29.09 29.09 37.51 2.90
535 545 2.512896 GGGCGGGATCAGCTGATT 59.487 61.111 29.26 13.91 34.37 2.57
536 546 1.152881 GGGCGGGATCAGCTGATTT 60.153 57.895 29.26 10.39 34.37 2.17
537 547 0.753111 GGGCGGGATCAGCTGATTTT 60.753 55.000 29.26 9.56 34.37 1.82
538 548 1.106285 GGCGGGATCAGCTGATTTTT 58.894 50.000 29.26 9.15 34.37 1.94
591 601 1.891919 GCGACACACTTCCAGCCAA 60.892 57.895 0.00 0.00 0.00 4.52
592 602 1.845809 GCGACACACTTCCAGCCAAG 61.846 60.000 0.00 0.00 0.00 3.61
593 603 1.845809 CGACACACTTCCAGCCAAGC 61.846 60.000 0.00 0.00 0.00 4.01
594 604 0.536006 GACACACTTCCAGCCAAGCT 60.536 55.000 0.00 0.00 40.77 3.74
595 605 0.764890 ACACACTTCCAGCCAAGCTA 59.235 50.000 0.00 0.00 36.40 3.32
596 606 1.160137 CACACTTCCAGCCAAGCTAC 58.840 55.000 0.00 0.00 36.40 3.58
597 607 1.059913 ACACTTCCAGCCAAGCTACT 58.940 50.000 0.00 0.00 36.40 2.57
598 608 1.271054 ACACTTCCAGCCAAGCTACTG 60.271 52.381 4.70 4.70 36.40 2.74
600 610 1.002134 TTCCAGCCAAGCTACTGCC 60.002 57.895 5.93 0.00 36.40 4.85
601 611 1.778017 TTCCAGCCAAGCTACTGCCA 61.778 55.000 5.93 0.00 36.40 4.92
618 635 1.568612 CCACTACACCACGCAGCAAG 61.569 60.000 0.00 0.00 0.00 4.01
621 638 1.630244 CTACACCACGCAGCAAGCTC 61.630 60.000 0.00 0.00 42.61 4.09
628 645 1.174712 ACGCAGCAAGCTCCACAAAT 61.175 50.000 0.00 0.00 42.61 2.32
630 647 1.466360 CGCAGCAAGCTCCACAAATAC 60.466 52.381 0.00 0.00 42.61 1.89
632 649 2.159462 GCAGCAAGCTCCACAAATACTC 60.159 50.000 0.00 0.00 41.15 2.59
634 651 3.077359 AGCAAGCTCCACAAATACTCAC 58.923 45.455 0.00 0.00 0.00 3.51
635 652 2.162408 GCAAGCTCCACAAATACTCACC 59.838 50.000 0.00 0.00 0.00 4.02
636 653 2.386661 AGCTCCACAAATACTCACCG 57.613 50.000 0.00 0.00 0.00 4.94
637 654 1.899814 AGCTCCACAAATACTCACCGA 59.100 47.619 0.00 0.00 0.00 4.69
638 655 2.501723 AGCTCCACAAATACTCACCGAT 59.498 45.455 0.00 0.00 0.00 4.18
639 656 2.609459 GCTCCACAAATACTCACCGATG 59.391 50.000 0.00 0.00 0.00 3.84
640 657 2.609459 CTCCACAAATACTCACCGATGC 59.391 50.000 0.00 0.00 0.00 3.91
642 659 2.355197 CACAAATACTCACCGATGCCA 58.645 47.619 0.00 0.00 0.00 4.92
644 661 3.002656 CACAAATACTCACCGATGCCATC 59.997 47.826 0.00 0.00 0.00 3.51
645 662 3.205338 CAAATACTCACCGATGCCATCA 58.795 45.455 5.40 0.00 0.00 3.07
646 663 2.533266 ATACTCACCGATGCCATCAC 57.467 50.000 5.40 0.00 0.00 3.06
647 664 0.102300 TACTCACCGATGCCATCACG 59.898 55.000 5.40 0.00 0.00 4.35
651 668 2.818841 CCGATGCCATCACGGGTA 59.181 61.111 5.40 0.00 42.48 3.69
653 670 1.441729 CGATGCCATCACGGGTAGT 59.558 57.895 5.40 0.00 34.06 2.73
654 671 0.179084 CGATGCCATCACGGGTAGTT 60.179 55.000 5.40 0.00 34.06 2.24
656 673 1.940613 GATGCCATCACGGGTAGTTTC 59.059 52.381 0.00 0.00 34.06 2.78
658 675 1.084289 GCCATCACGGGTAGTTTCAC 58.916 55.000 0.00 0.00 34.06 3.18
666 691 3.493503 CACGGGTAGTTTCACTTTCACTC 59.506 47.826 0.00 0.00 0.00 3.51
689 714 2.423446 TATCTTGCTCCATTGCAGCA 57.577 45.000 0.00 0.00 45.32 4.41
727 1334 5.049060 TCACGTTCAAAACCACCATTATCAG 60.049 40.000 0.00 0.00 0.00 2.90
728 1335 5.049060 CACGTTCAAAACCACCATTATCAGA 60.049 40.000 0.00 0.00 0.00 3.27
729 1336 5.181245 ACGTTCAAAACCACCATTATCAGAG 59.819 40.000 0.00 0.00 0.00 3.35
730 1337 5.402398 GTTCAAAACCACCATTATCAGAGC 58.598 41.667 0.00 0.00 0.00 4.09
731 1338 4.016444 TCAAAACCACCATTATCAGAGCC 58.984 43.478 0.00 0.00 0.00 4.70
732 1339 2.736670 AACCACCATTATCAGAGCCC 57.263 50.000 0.00 0.00 0.00 5.19
733 1340 1.595311 ACCACCATTATCAGAGCCCA 58.405 50.000 0.00 0.00 0.00 5.36
734 1341 1.492176 ACCACCATTATCAGAGCCCAG 59.508 52.381 0.00 0.00 0.00 4.45
735 1342 1.770658 CCACCATTATCAGAGCCCAGA 59.229 52.381 0.00 0.00 0.00 3.86
736 1343 2.486191 CCACCATTATCAGAGCCCAGAC 60.486 54.545 0.00 0.00 0.00 3.51
737 1344 1.771255 ACCATTATCAGAGCCCAGACC 59.229 52.381 0.00 0.00 0.00 3.85
738 1345 2.053244 CCATTATCAGAGCCCAGACCT 58.947 52.381 0.00 0.00 0.00 3.85
739 1346 3.242867 CCATTATCAGAGCCCAGACCTA 58.757 50.000 0.00 0.00 0.00 3.08
740 1347 3.648067 CCATTATCAGAGCCCAGACCTAA 59.352 47.826 0.00 0.00 0.00 2.69
741 1348 4.503991 CCATTATCAGAGCCCAGACCTAAC 60.504 50.000 0.00 0.00 0.00 2.34
742 1349 2.559381 ATCAGAGCCCAGACCTAACT 57.441 50.000 0.00 0.00 0.00 2.24
743 1350 1.853963 TCAGAGCCCAGACCTAACTC 58.146 55.000 0.00 0.00 0.00 3.01
744 1351 0.457851 CAGAGCCCAGACCTAACTCG 59.542 60.000 0.00 0.00 32.60 4.18
745 1352 0.039911 AGAGCCCAGACCTAACTCGT 59.960 55.000 0.00 0.00 32.60 4.18
784 1394 0.235665 CTGCAAACAGTAGTGGCACG 59.764 55.000 12.71 0.00 39.22 5.34
938 1561 2.307309 GCGGGAAAAGCGGCAAAAC 61.307 57.895 1.45 0.00 0.00 2.43
939 1562 1.066587 CGGGAAAAGCGGCAAAACA 59.933 52.632 1.45 0.00 0.00 2.83
1027 1656 1.690985 CTCCTCCCTTGGGTCTCCC 60.691 68.421 5.51 0.00 45.71 4.30
1202 1839 2.903855 TCGATCCGGTACCGCCTC 60.904 66.667 29.15 23.20 38.24 4.70
1293 1933 3.226347 GCTGTTTCTGTTTCGTATGTGC 58.774 45.455 0.00 0.00 0.00 4.57
1295 1935 2.230864 GTTTCTGTTTCGTATGTGCGC 58.769 47.619 0.00 0.00 0.00 6.09
1297 1937 2.640346 TCTGTTTCGTATGTGCGCTA 57.360 45.000 9.73 0.00 0.00 4.26
1300 1940 1.930503 TGTTTCGTATGTGCGCTATGG 59.069 47.619 9.73 0.76 0.00 2.74
1647 2287 4.496336 GCCCCGGCTGAGATTGCT 62.496 66.667 0.00 0.00 38.26 3.91
1648 2288 2.515523 CCCCGGCTGAGATTGCTG 60.516 66.667 0.00 0.00 36.63 4.41
1649 2289 3.207669 CCCGGCTGAGATTGCTGC 61.208 66.667 0.00 0.00 35.62 5.25
1650 2290 3.570638 CCGGCTGAGATTGCTGCG 61.571 66.667 0.00 0.00 35.62 5.18
1651 2291 2.510012 CGGCTGAGATTGCTGCGA 60.510 61.111 0.00 0.00 34.05 5.10
1652 2292 2.523507 CGGCTGAGATTGCTGCGAG 61.524 63.158 0.00 0.00 34.05 5.03
1701 2347 0.178767 ACCAAGCTCGCATCTGCATA 59.821 50.000 2.72 0.00 42.21 3.14
1774 2420 5.449999 CCTGGTTTTCCGGCATCTATAAAAC 60.450 44.000 14.00 14.00 44.66 2.43
1777 2423 6.885376 TGGTTTTCCGGCATCTATAAAACTTA 59.115 34.615 19.00 10.14 44.36 2.24
1834 2480 2.983229 AGTGATCTTGCAAGCAGTAGG 58.017 47.619 21.99 0.00 0.00 3.18
1882 2528 3.557595 CAGGAAGATTGTATTGAGCGGAC 59.442 47.826 0.00 0.00 0.00 4.79
1891 2537 3.767673 TGTATTGAGCGGACTAACCTTCT 59.232 43.478 0.00 0.00 36.31 2.85
1894 2547 3.863142 TGAGCGGACTAACCTTCTAAC 57.137 47.619 0.00 0.00 36.31 2.34
1904 2557 7.363617 CGGACTAACCTTCTAACCTCTAACAAT 60.364 40.741 0.00 0.00 36.31 2.71
1986 2642 6.126768 CCAGATCTATTGGAGTTTGGTCCTTA 60.127 42.308 0.00 0.00 37.96 2.69
1988 2644 6.443849 AGATCTATTGGAGTTTGGTCCTTACA 59.556 38.462 0.00 0.00 37.52 2.41
1996 2652 3.071479 GTTTGGTCCTTACATCGCTTCA 58.929 45.455 0.00 0.00 0.00 3.02
2012 2668 0.183492 TTCAGCATCTATGGGTGGCC 59.817 55.000 0.00 0.00 34.64 5.36
2063 2719 1.331756 AGCTTTCTCGTTGCAACAGTG 59.668 47.619 28.01 19.66 0.00 3.66
2081 2737 2.439507 AGTGTTCTGTTGGTCAGTGGAT 59.560 45.455 0.00 0.00 43.97 3.41
2368 3040 3.786712 CTTGTTTTTATTTGTGCAGCGC 58.213 40.909 0.00 0.00 0.00 5.92
2445 3322 7.499443 GCCTTCGGGTGTTTTCCTCTAAAAC 62.499 48.000 6.44 6.44 44.58 2.43
2513 3391 2.796031 TGTGTTTAACGTGCTCTTACCG 59.204 45.455 0.00 0.00 0.00 4.02
2649 3527 2.124411 ACACCCACCTACTCAACTGTT 58.876 47.619 0.00 0.00 0.00 3.16
2651 3529 3.053917 ACACCCACCTACTCAACTGTTTT 60.054 43.478 0.00 0.00 0.00 2.43
2683 3561 6.034150 CGTCGCAGTGTAAAACATGATTAGTA 59.966 38.462 0.00 0.00 0.00 1.82
2685 3563 7.846107 GTCGCAGTGTAAAACATGATTAGTATG 59.154 37.037 0.00 0.00 0.00 2.39
2726 3642 3.144657 TGAGTTGAGTTGCATGGTGAT 57.855 42.857 0.00 0.00 0.00 3.06
2774 3690 7.106239 ACTCTGTATGTGCTATACTGCTTTTT 58.894 34.615 11.28 0.00 0.00 1.94
2973 3890 9.166126 CTCAGTTTTACCGAACAAGAAAAATAC 57.834 33.333 0.00 0.00 31.94 1.89
3073 3990 2.111972 ACACTTAGGAACAGGAGAGGGA 59.888 50.000 0.00 0.00 0.00 4.20
3118 4035 0.776451 CGTGTCCGTCAAAGTCTTCG 59.224 55.000 0.00 0.00 0.00 3.79
3453 4370 1.705997 AAGAGGGACAACGGCAACCT 61.706 55.000 0.00 0.00 0.00 3.50
3504 4421 0.251077 AGTCCAGGGCTTGCTCAAAG 60.251 55.000 0.00 0.00 39.07 2.77
3514 4431 0.183492 TTGCTCAAAGGTCTGCTGGT 59.817 50.000 0.00 0.00 0.00 4.00
3562 4479 1.338674 TGTCTTGGTATTGGGCGTCAG 60.339 52.381 0.00 0.00 0.00 3.51
3607 4524 1.406069 CCAAGAGGACCATCTGTTCCG 60.406 57.143 0.00 0.00 36.89 4.30
3725 4644 5.180868 GCATTGGATAGGAATAGAAGCACAG 59.819 44.000 0.00 0.00 0.00 3.66
3922 4843 8.548877 GGCTATATGGGTCTTCCTATTAATTCA 58.451 37.037 0.00 0.00 36.35 2.57
3946 4867 2.955660 TGGTGAATTTGTCAGGGTTCAC 59.044 45.455 14.06 14.06 45.90 3.18
4081 5050 4.799564 TGCCCATTTAAGAATCAACCAC 57.200 40.909 0.00 0.00 0.00 4.16
4152 5121 1.557371 TCGTCTTATCCCCACAATGCA 59.443 47.619 0.00 0.00 0.00 3.96
4264 5233 0.955919 GGAACCAGCAAGGGAGTTCG 60.956 60.000 0.04 0.00 43.89 3.95
4383 5352 2.226962 ATCCAACCTGCTGCTGAAAT 57.773 45.000 8.20 0.00 0.00 2.17
4459 5428 3.897239 AGAAAACTGTGGTCCATGTTCA 58.103 40.909 11.90 0.00 0.00 3.18
4471 5440 5.600484 TGGTCCATGTTCAAGTAACCAAATT 59.400 36.000 0.00 0.00 37.27 1.82
4488 5457 6.640518 ACCAAATTAGAGCTGAAGATCGTTA 58.359 36.000 0.00 0.00 35.26 3.18
4505 5474 0.391927 TTACTTTCCGGGGATGTGCG 60.392 55.000 0.00 0.00 0.00 5.34
4542 5511 4.319694 GCAATTGTTTCATGAAGGTTTGGC 60.320 41.667 8.41 6.81 0.00 4.52
4549 5518 1.753073 CATGAAGGTTTGGCTGATCCC 59.247 52.381 0.00 0.00 0.00 3.85
4640 5613 4.355720 CAGCTGAGCAAGGGCCCA 62.356 66.667 27.56 0.00 42.56 5.36
4678 5652 2.693591 TCAGAGTCGTCAACCTCAACTT 59.306 45.455 0.00 0.00 0.00 2.66
5097 6071 0.320247 GCACGGCCTCATGGATCTAG 60.320 60.000 0.00 0.00 34.57 2.43
5464 6442 1.961277 GCAACCCCGAGATATGCCG 60.961 63.158 0.00 0.00 0.00 5.69
5509 6487 2.389059 CGAGATATGCCAGTTCGTCTG 58.611 52.381 4.03 4.03 43.27 3.51
5746 6724 3.093057 AGTAGGTGCATCGAAGAAGACT 58.907 45.455 0.00 0.00 43.58 3.24
5811 6796 3.305964 TGAGTCTTTTCGTCGTCATCAC 58.694 45.455 0.00 0.00 0.00 3.06
5812 6797 3.004419 TGAGTCTTTTCGTCGTCATCACT 59.996 43.478 0.00 0.00 0.00 3.41
5813 6798 3.566523 AGTCTTTTCGTCGTCATCACTC 58.433 45.455 0.00 0.00 0.00 3.51
5814 6799 3.004419 AGTCTTTTCGTCGTCATCACTCA 59.996 43.478 0.00 0.00 0.00 3.41
5815 6800 3.921021 GTCTTTTCGTCGTCATCACTCAT 59.079 43.478 0.00 0.00 0.00 2.90
5816 6801 4.030753 GTCTTTTCGTCGTCATCACTCATC 59.969 45.833 0.00 0.00 0.00 2.92
5957 6948 7.342581 TCCCTATTGTTGTTGTAATATGCTCA 58.657 34.615 0.00 0.00 0.00 4.26
6120 7111 6.462207 CCCAACTGTTCATGTTGAAACCATTA 60.462 38.462 8.01 0.00 45.27 1.90
6239 7230 4.020839 AGCATTGGAAGGGAAAATCTGTTG 60.021 41.667 0.00 0.00 0.00 3.33
6261 7252 2.270352 TTCCTCGTGTGATTTTGGCT 57.730 45.000 0.00 0.00 0.00 4.75
6296 7287 2.440946 GCCCCAAGCTTTTCCTTGT 58.559 52.632 0.00 0.00 40.40 3.16
6297 7288 0.033920 GCCCCAAGCTTTTCCTTGTG 59.966 55.000 0.00 0.00 40.40 3.33
6298 7289 1.413118 CCCCAAGCTTTTCCTTGTGT 58.587 50.000 0.00 0.00 40.40 3.72
6299 7290 1.762370 CCCCAAGCTTTTCCTTGTGTT 59.238 47.619 0.00 0.00 40.40 3.32
6300 7291 2.483538 CCCCAAGCTTTTCCTTGTGTTG 60.484 50.000 0.00 0.00 40.40 3.33
6301 7292 2.168313 CCCAAGCTTTTCCTTGTGTTGT 59.832 45.455 0.00 0.00 40.40 3.32
6302 7293 3.369366 CCCAAGCTTTTCCTTGTGTTGTT 60.369 43.478 0.00 0.00 40.40 2.83
6303 7294 3.618150 CCAAGCTTTTCCTTGTGTTGTTG 59.382 43.478 0.00 0.00 40.40 3.33
6304 7295 2.892374 AGCTTTTCCTTGTGTTGTTGC 58.108 42.857 0.00 0.00 0.00 4.17
6315 7306 2.293122 TGTGTTGTTGCTGCATTCCTAC 59.707 45.455 1.84 0.00 0.00 3.18
6316 7307 1.535028 TGTTGTTGCTGCATTCCTACG 59.465 47.619 1.84 0.00 0.00 3.51
6323 7314 1.135859 GCTGCATTCCTACGCATATGC 60.136 52.381 18.08 18.08 42.75 3.14
6326 7317 2.807967 TGCATTCCTACGCATATGCTTC 59.192 45.455 24.56 3.27 42.85 3.86
6346 7337 4.908601 TCTGCAGACTAAATTCTCCCAA 57.091 40.909 13.74 0.00 0.00 4.12
6459 7452 1.357420 ACATGGTTGGTTGCCCATCTA 59.643 47.619 0.00 0.00 41.49 1.98
6462 7455 2.964209 TGGTTGGTTGCCCATCTAAAA 58.036 42.857 0.00 0.00 41.49 1.52
6477 7470 5.334414 CCATCTAAAACACTGTGAACTGAGC 60.334 44.000 15.86 0.00 0.00 4.26
6483 7476 2.432146 ACACTGTGAACTGAGCAAGAGA 59.568 45.455 15.86 0.00 0.00 3.10
6532 7528 4.570772 ACGTATCATCTTGTATGTGTTGGC 59.429 41.667 0.00 0.00 0.00 4.52
6542 7538 3.964875 GTGTTGGCACACCGCAGG 61.965 66.667 8.44 0.00 46.84 4.85
6561 7557 4.874966 GCAGGATCAGAAGTATGCATATCC 59.125 45.833 10.16 11.62 33.92 2.59
6797 7800 2.430367 GACCTGCCCGTTGTTCCT 59.570 61.111 0.00 0.00 0.00 3.36
6801 7804 4.323477 TGCCCGTTGTTCCTCCCG 62.323 66.667 0.00 0.00 0.00 5.14
6837 7840 1.966451 GTTGGTCACCTTCAGGCCG 60.966 63.158 0.00 0.00 39.32 6.13
6960 7963 1.503542 GAGCCGCTGGTTGAACATG 59.496 57.895 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.667539 TGAAATTGGGTGAACTGTTCAAA 57.332 34.783 23.55 15.23 42.15 2.69
1 2 5.362143 TCATGAAATTGGGTGAACTGTTCAA 59.638 36.000 23.55 9.72 42.15 2.69
2 3 4.892345 TCATGAAATTGGGTGAACTGTTCA 59.108 37.500 18.69 18.69 37.33 3.18
3 4 5.452078 TCATGAAATTGGGTGAACTGTTC 57.548 39.130 13.49 13.49 0.00 3.18
4 5 5.598005 TCTTCATGAAATTGGGTGAACTGTT 59.402 36.000 9.88 0.00 0.00 3.16
5 6 5.010012 GTCTTCATGAAATTGGGTGAACTGT 59.990 40.000 9.88 0.00 0.00 3.55
6 7 5.009911 TGTCTTCATGAAATTGGGTGAACTG 59.990 40.000 9.88 0.00 0.00 3.16
7 8 5.139727 TGTCTTCATGAAATTGGGTGAACT 58.860 37.500 9.88 0.00 0.00 3.01
8 9 5.452078 TGTCTTCATGAAATTGGGTGAAC 57.548 39.130 9.88 0.00 0.00 3.18
22 23 3.865446 TCTCAATCACGCATGTCTTCAT 58.135 40.909 0.00 0.00 34.21 2.57
23 24 3.317603 TCTCAATCACGCATGTCTTCA 57.682 42.857 0.00 0.00 0.00 3.02
24 25 4.153117 AGTTTCTCAATCACGCATGTCTTC 59.847 41.667 0.00 0.00 0.00 2.87
25 26 4.067896 AGTTTCTCAATCACGCATGTCTT 58.932 39.130 0.00 0.00 0.00 3.01
26 27 3.668447 AGTTTCTCAATCACGCATGTCT 58.332 40.909 0.00 0.00 0.00 3.41
27 28 3.433274 TGAGTTTCTCAATCACGCATGTC 59.567 43.478 0.00 0.00 37.57 3.06
28 29 3.187227 GTGAGTTTCTCAATCACGCATGT 59.813 43.478 0.88 0.00 42.46 3.21
29 30 3.740590 GTGAGTTTCTCAATCACGCATG 58.259 45.455 0.88 0.00 42.46 4.06
46 47 2.031769 TCATTTTGCAGCTGAACGTGAG 60.032 45.455 20.43 0.73 0.00 3.51
47 48 1.946081 TCATTTTGCAGCTGAACGTGA 59.054 42.857 20.43 11.21 0.00 4.35
48 49 2.404265 TCATTTTGCAGCTGAACGTG 57.596 45.000 20.43 8.95 0.00 4.49
49 50 3.648339 AATCATTTTGCAGCTGAACGT 57.352 38.095 20.43 0.00 0.00 3.99
50 51 3.122278 CCAAATCATTTTGCAGCTGAACG 59.878 43.478 20.43 0.00 40.77 3.95
51 52 4.060205 ACCAAATCATTTTGCAGCTGAAC 58.940 39.130 20.43 0.12 40.77 3.18
52 53 4.339872 ACCAAATCATTTTGCAGCTGAA 57.660 36.364 20.43 2.96 40.77 3.02
53 54 4.059511 CAACCAAATCATTTTGCAGCTGA 58.940 39.130 20.43 0.00 40.77 4.26
54 55 4.059511 TCAACCAAATCATTTTGCAGCTG 58.940 39.130 10.11 10.11 40.77 4.24
55 56 4.312443 CTCAACCAAATCATTTTGCAGCT 58.688 39.130 0.00 0.00 40.77 4.24
56 57 3.120442 GCTCAACCAAATCATTTTGCAGC 60.120 43.478 0.00 0.00 40.77 5.25
57 58 4.059511 TGCTCAACCAAATCATTTTGCAG 58.940 39.130 0.00 0.00 40.77 4.41
58 59 4.069300 TGCTCAACCAAATCATTTTGCA 57.931 36.364 0.00 0.00 40.77 4.08
59 60 6.314400 ACATATGCTCAACCAAATCATTTTGC 59.686 34.615 1.58 0.00 40.77 3.68
60 61 7.201574 CCACATATGCTCAACCAAATCATTTTG 60.202 37.037 1.58 0.00 41.59 2.44
61 62 6.819649 CCACATATGCTCAACCAAATCATTTT 59.180 34.615 1.58 0.00 0.00 1.82
62 63 6.342906 CCACATATGCTCAACCAAATCATTT 58.657 36.000 1.58 0.00 0.00 2.32
63 64 5.163385 CCCACATATGCTCAACCAAATCATT 60.163 40.000 1.58 0.00 0.00 2.57
64 65 4.342951 CCCACATATGCTCAACCAAATCAT 59.657 41.667 1.58 0.00 0.00 2.45
65 66 3.700539 CCCACATATGCTCAACCAAATCA 59.299 43.478 1.58 0.00 0.00 2.57
66 67 3.491447 GCCCACATATGCTCAACCAAATC 60.491 47.826 1.58 0.00 0.00 2.17
67 68 2.431782 GCCCACATATGCTCAACCAAAT 59.568 45.455 1.58 0.00 0.00 2.32
68 69 1.824230 GCCCACATATGCTCAACCAAA 59.176 47.619 1.58 0.00 0.00 3.28
69 70 1.005805 AGCCCACATATGCTCAACCAA 59.994 47.619 1.58 0.00 30.33 3.67
70 71 0.625316 AGCCCACATATGCTCAACCA 59.375 50.000 1.58 0.00 30.33 3.67
71 72 3.502164 AGCCCACATATGCTCAACC 57.498 52.632 1.58 0.00 30.33 3.77
76 77 2.304092 CAACATGAGCCCACATATGCT 58.696 47.619 1.58 0.00 41.42 3.79
77 78 1.338973 CCAACATGAGCCCACATATGC 59.661 52.381 1.58 0.00 0.00 3.14
78 79 1.338973 GCCAACATGAGCCCACATATG 59.661 52.381 0.00 0.00 0.00 1.78
79 80 1.216175 AGCCAACATGAGCCCACATAT 59.784 47.619 0.00 0.00 0.00 1.78
80 81 0.625316 AGCCAACATGAGCCCACATA 59.375 50.000 0.00 0.00 0.00 2.29
81 82 0.625316 TAGCCAACATGAGCCCACAT 59.375 50.000 0.00 0.00 0.00 3.21
82 83 0.625316 ATAGCCAACATGAGCCCACA 59.375 50.000 0.00 0.00 0.00 4.17
83 84 1.312815 GATAGCCAACATGAGCCCAC 58.687 55.000 0.00 0.00 0.00 4.61
84 85 0.918258 TGATAGCCAACATGAGCCCA 59.082 50.000 0.00 0.00 0.00 5.36
85 86 2.057137 TTGATAGCCAACATGAGCCC 57.943 50.000 0.00 0.00 0.00 5.19
86 87 4.645535 TCTATTGATAGCCAACATGAGCC 58.354 43.478 0.00 0.00 37.63 4.70
87 88 5.391736 GCATCTATTGATAGCCAACATGAGC 60.392 44.000 0.00 0.00 37.63 4.26
88 89 5.704053 TGCATCTATTGATAGCCAACATGAG 59.296 40.000 0.00 0.00 37.63 2.90
89 90 5.623169 TGCATCTATTGATAGCCAACATGA 58.377 37.500 0.00 0.00 37.63 3.07
90 91 5.952526 TGCATCTATTGATAGCCAACATG 57.047 39.130 0.00 0.00 37.63 3.21
91 92 6.482524 AGATGCATCTATTGATAGCCAACAT 58.517 36.000 27.73 0.00 37.63 2.71
92 93 5.872963 AGATGCATCTATTGATAGCCAACA 58.127 37.500 27.73 0.00 37.63 3.33
93 94 6.654161 AGAAGATGCATCTATTGATAGCCAAC 59.346 38.462 28.92 0.99 35.15 3.77
94 95 6.776744 AGAAGATGCATCTATTGATAGCCAA 58.223 36.000 28.92 0.00 35.76 4.52
95 96 6.370186 AGAAGATGCATCTATTGATAGCCA 57.630 37.500 28.92 0.30 35.76 4.75
96 97 7.684937 AAAGAAGATGCATCTATTGATAGCC 57.315 36.000 28.92 9.89 35.76 3.93
101 102 9.330063 ACGAATAAAAGAAGATGCATCTATTGA 57.670 29.630 28.92 17.13 35.76 2.57
102 103 9.941664 AACGAATAAAAGAAGATGCATCTATTG 57.058 29.630 28.92 17.71 35.76 1.90
104 105 9.941664 CAAACGAATAAAAGAAGATGCATCTAT 57.058 29.630 28.92 17.87 35.76 1.98
105 106 7.910162 GCAAACGAATAAAAGAAGATGCATCTA 59.090 33.333 28.92 13.15 35.76 1.98
106 107 6.749118 GCAAACGAATAAAAGAAGATGCATCT 59.251 34.615 23.75 23.75 39.22 2.90
107 108 6.527722 TGCAAACGAATAAAAGAAGATGCATC 59.472 34.615 19.37 19.37 35.39 3.91
108 109 6.389091 TGCAAACGAATAAAAGAAGATGCAT 58.611 32.000 0.00 0.00 35.39 3.96
109 110 5.767269 TGCAAACGAATAAAAGAAGATGCA 58.233 33.333 0.00 0.00 37.70 3.96
110 111 6.689178 TTGCAAACGAATAAAAGAAGATGC 57.311 33.333 0.00 0.00 0.00 3.91
111 112 8.755018 AGTTTTGCAAACGAATAAAAGAAGATG 58.245 29.630 12.39 0.00 0.00 2.90
112 113 8.871686 AGTTTTGCAAACGAATAAAAGAAGAT 57.128 26.923 12.39 0.00 0.00 2.40
113 114 9.959749 ATAGTTTTGCAAACGAATAAAAGAAGA 57.040 25.926 12.39 0.00 0.00 2.87
114 115 9.993881 CATAGTTTTGCAAACGAATAAAAGAAG 57.006 29.630 12.39 0.00 0.00 2.85
115 116 9.522804 ACATAGTTTTGCAAACGAATAAAAGAA 57.477 25.926 12.39 0.00 0.00 2.52
116 117 8.963130 CACATAGTTTTGCAAACGAATAAAAGA 58.037 29.630 12.39 0.00 0.00 2.52
117 118 8.963130 TCACATAGTTTTGCAAACGAATAAAAG 58.037 29.630 12.39 0.31 0.00 2.27
118 119 8.858003 TCACATAGTTTTGCAAACGAATAAAA 57.142 26.923 12.39 0.00 0.00 1.52
119 120 8.858003 TTCACATAGTTTTGCAAACGAATAAA 57.142 26.923 12.39 0.00 0.00 1.40
120 121 8.747666 GTTTCACATAGTTTTGCAAACGAATAA 58.252 29.630 12.39 0.00 0.00 1.40
121 122 7.915923 TGTTTCACATAGTTTTGCAAACGAATA 59.084 29.630 12.39 2.21 0.00 1.75
122 123 6.754209 TGTTTCACATAGTTTTGCAAACGAAT 59.246 30.769 12.39 0.00 0.00 3.34
123 124 6.093404 TGTTTCACATAGTTTTGCAAACGAA 58.907 32.000 12.39 0.00 0.00 3.85
124 125 5.641709 TGTTTCACATAGTTTTGCAAACGA 58.358 33.333 12.39 4.34 0.00 3.85
125 126 5.940603 TGTTTCACATAGTTTTGCAAACG 57.059 34.783 12.39 0.96 0.00 3.60
126 127 9.553418 AAAAATGTTTCACATAGTTTTGCAAAC 57.447 25.926 12.39 7.48 37.97 2.93
188 189 9.967346 TTCAAACATATTGTCAAATAAACCGAA 57.033 25.926 0.00 0.00 32.06 4.30
221 222 9.944663 GCTGACCGTTCAATTTTATAATGATAA 57.055 29.630 0.00 0.00 0.00 1.75
222 223 9.337396 AGCTGACCGTTCAATTTTATAATGATA 57.663 29.630 0.00 0.00 0.00 2.15
223 224 8.131100 CAGCTGACCGTTCAATTTTATAATGAT 58.869 33.333 8.42 0.00 0.00 2.45
224 225 7.415095 CCAGCTGACCGTTCAATTTTATAATGA 60.415 37.037 17.39 0.00 0.00 2.57
225 226 6.692681 CCAGCTGACCGTTCAATTTTATAATG 59.307 38.462 17.39 0.00 0.00 1.90
226 227 6.377146 ACCAGCTGACCGTTCAATTTTATAAT 59.623 34.615 17.39 0.00 0.00 1.28
227 228 5.708230 ACCAGCTGACCGTTCAATTTTATAA 59.292 36.000 17.39 0.00 0.00 0.98
228 229 5.250200 ACCAGCTGACCGTTCAATTTTATA 58.750 37.500 17.39 0.00 0.00 0.98
229 230 4.079253 ACCAGCTGACCGTTCAATTTTAT 58.921 39.130 17.39 0.00 0.00 1.40
230 231 3.482436 ACCAGCTGACCGTTCAATTTTA 58.518 40.909 17.39 0.00 0.00 1.52
231 232 2.293399 GACCAGCTGACCGTTCAATTTT 59.707 45.455 17.39 0.00 0.00 1.82
232 233 1.880027 GACCAGCTGACCGTTCAATTT 59.120 47.619 17.39 0.00 0.00 1.82
233 234 1.202758 TGACCAGCTGACCGTTCAATT 60.203 47.619 17.39 0.00 0.00 2.32
234 235 0.396435 TGACCAGCTGACCGTTCAAT 59.604 50.000 17.39 0.00 0.00 2.57
235 236 0.531974 GTGACCAGCTGACCGTTCAA 60.532 55.000 17.39 0.00 0.00 2.69
236 237 1.069090 GTGACCAGCTGACCGTTCA 59.931 57.895 17.39 6.57 0.00 3.18
237 238 2.022129 CGTGACCAGCTGACCGTTC 61.022 63.158 17.39 3.89 0.00 3.95
238 239 2.029073 CGTGACCAGCTGACCGTT 59.971 61.111 17.39 0.00 0.00 4.44
239 240 4.664677 GCGTGACCAGCTGACCGT 62.665 66.667 17.39 4.20 0.00 4.83
246 247 2.709125 TATATGCCGGCGTGACCAGC 62.709 60.000 31.45 0.63 42.76 4.85
247 248 0.944311 GTATATGCCGGCGTGACCAG 60.944 60.000 31.45 0.00 39.03 4.00
248 249 1.068417 GTATATGCCGGCGTGACCA 59.932 57.895 31.45 11.78 39.03 4.02
249 250 2.019951 CGTATATGCCGGCGTGACC 61.020 63.158 31.45 16.17 0.00 4.02
250 251 2.019951 CCGTATATGCCGGCGTGAC 61.020 63.158 31.45 24.93 38.85 3.67
251 252 2.337170 CCGTATATGCCGGCGTGA 59.663 61.111 31.45 16.07 38.85 4.35
252 253 2.736995 CCCGTATATGCCGGCGTG 60.737 66.667 31.45 14.08 44.13 5.34
253 254 3.216944 GACCCGTATATGCCGGCGT 62.217 63.158 27.04 27.04 44.13 5.68
254 255 2.431942 GACCCGTATATGCCGGCG 60.432 66.667 23.90 7.09 44.13 6.46
255 256 2.431942 CGACCCGTATATGCCGGC 60.432 66.667 22.73 22.73 44.13 6.13
256 257 1.080974 GTCGACCCGTATATGCCGG 60.081 63.158 3.51 0.00 45.07 6.13
257 258 1.441515 CGTCGACCCGTATATGCCG 60.442 63.158 10.58 0.00 0.00 5.69
258 259 1.731969 GCGTCGACCCGTATATGCC 60.732 63.158 10.58 0.00 0.00 4.40
259 260 1.731969 GGCGTCGACCCGTATATGC 60.732 63.158 10.58 4.57 0.00 3.14
260 261 0.313043 AAGGCGTCGACCCGTATATG 59.687 55.000 10.58 0.00 0.00 1.78
261 262 0.313043 CAAGGCGTCGACCCGTATAT 59.687 55.000 10.58 0.00 0.00 0.86
262 263 1.727511 CCAAGGCGTCGACCCGTATA 61.728 60.000 10.58 0.00 0.00 1.47
263 264 2.493030 CAAGGCGTCGACCCGTAT 59.507 61.111 10.58 2.17 0.00 3.06
264 265 3.751246 CCAAGGCGTCGACCCGTA 61.751 66.667 10.58 0.00 0.00 4.02
277 278 4.389576 GTTGGCAGCGCGTCCAAG 62.390 66.667 28.34 7.47 42.44 3.61
282 283 3.697439 ATATGGGTTGGCAGCGCGT 62.697 57.895 16.65 16.65 0.00 6.01
283 284 1.163420 TAATATGGGTTGGCAGCGCG 61.163 55.000 13.32 0.00 0.00 6.86
284 285 1.028905 TTAATATGGGTTGGCAGCGC 58.971 50.000 11.45 11.45 0.00 5.92
285 286 3.791973 TTTTAATATGGGTTGGCAGCG 57.208 42.857 0.00 0.00 0.00 5.18
286 287 4.826556 TGTTTTTAATATGGGTTGGCAGC 58.173 39.130 0.00 0.00 0.00 5.25
287 288 5.186797 TCCTGTTTTTAATATGGGTTGGCAG 59.813 40.000 0.00 0.00 0.00 4.85
288 289 5.046950 GTCCTGTTTTTAATATGGGTTGGCA 60.047 40.000 0.00 0.00 0.00 4.92
289 290 5.416083 GTCCTGTTTTTAATATGGGTTGGC 58.584 41.667 0.00 0.00 0.00 4.52
290 291 5.393678 CCGTCCTGTTTTTAATATGGGTTGG 60.394 44.000 0.00 0.00 0.00 3.77
291 292 5.416326 TCCGTCCTGTTTTTAATATGGGTTG 59.584 40.000 0.00 0.00 0.00 3.77
292 293 5.416639 GTCCGTCCTGTTTTTAATATGGGTT 59.583 40.000 0.00 0.00 0.00 4.11
293 294 4.945543 GTCCGTCCTGTTTTTAATATGGGT 59.054 41.667 0.00 0.00 0.00 4.51
294 295 4.034742 CGTCCGTCCTGTTTTTAATATGGG 59.965 45.833 0.00 0.00 0.00 4.00
295 296 4.495184 GCGTCCGTCCTGTTTTTAATATGG 60.495 45.833 0.00 0.00 0.00 2.74
296 297 4.331717 AGCGTCCGTCCTGTTTTTAATATG 59.668 41.667 0.00 0.00 0.00 1.78
297 298 4.331717 CAGCGTCCGTCCTGTTTTTAATAT 59.668 41.667 0.00 0.00 0.00 1.28
298 299 3.680937 CAGCGTCCGTCCTGTTTTTAATA 59.319 43.478 0.00 0.00 0.00 0.98
299 300 2.482721 CAGCGTCCGTCCTGTTTTTAAT 59.517 45.455 0.00 0.00 0.00 1.40
300 301 1.868498 CAGCGTCCGTCCTGTTTTTAA 59.132 47.619 0.00 0.00 0.00 1.52
301 302 1.504359 CAGCGTCCGTCCTGTTTTTA 58.496 50.000 0.00 0.00 0.00 1.52
302 303 1.164041 CCAGCGTCCGTCCTGTTTTT 61.164 55.000 0.00 0.00 0.00 1.94
303 304 1.597027 CCAGCGTCCGTCCTGTTTT 60.597 57.895 0.00 0.00 0.00 2.43
304 305 2.030562 CCAGCGTCCGTCCTGTTT 59.969 61.111 0.00 0.00 0.00 2.83
305 306 4.003788 CCCAGCGTCCGTCCTGTT 62.004 66.667 0.00 0.00 0.00 3.16
325 326 4.668118 TCGTTTGGGTCGGCCGTC 62.668 66.667 27.15 20.62 34.97 4.79
326 327 4.238654 TTCGTTTGGGTCGGCCGT 62.239 61.111 27.15 0.00 34.97 5.68
327 328 3.719144 GTTCGTTTGGGTCGGCCG 61.719 66.667 22.12 22.12 34.97 6.13
328 329 1.726533 TTTGTTCGTTTGGGTCGGCC 61.727 55.000 0.00 0.00 0.00 6.13
329 330 0.100861 TTTTGTTCGTTTGGGTCGGC 59.899 50.000 0.00 0.00 0.00 5.54
330 331 1.268845 CCTTTTGTTCGTTTGGGTCGG 60.269 52.381 0.00 0.00 0.00 4.79
331 332 1.862411 GCCTTTTGTTCGTTTGGGTCG 60.862 52.381 0.00 0.00 0.00 4.79
332 333 1.847818 GCCTTTTGTTCGTTTGGGTC 58.152 50.000 0.00 0.00 0.00 4.46
333 334 0.101579 CGCCTTTTGTTCGTTTGGGT 59.898 50.000 0.00 0.00 0.00 4.51
334 335 0.596341 CCGCCTTTTGTTCGTTTGGG 60.596 55.000 0.00 0.00 0.00 4.12
335 336 0.382515 TCCGCCTTTTGTTCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
336 337 1.472990 GTCCGCCTTTTGTTCGTTTG 58.527 50.000 0.00 0.00 0.00 2.93
337 338 0.028374 CGTCCGCCTTTTGTTCGTTT 59.972 50.000 0.00 0.00 0.00 3.60
338 339 0.810823 TCGTCCGCCTTTTGTTCGTT 60.811 50.000 0.00 0.00 0.00 3.85
339 340 0.810823 TTCGTCCGCCTTTTGTTCGT 60.811 50.000 0.00 0.00 0.00 3.85
340 341 0.305313 TTTCGTCCGCCTTTTGTTCG 59.695 50.000 0.00 0.00 0.00 3.95
341 342 2.581637 GATTTCGTCCGCCTTTTGTTC 58.418 47.619 0.00 0.00 0.00 3.18
342 343 1.069500 CGATTTCGTCCGCCTTTTGTT 60.069 47.619 0.00 0.00 34.11 2.83
343 344 0.515564 CGATTTCGTCCGCCTTTTGT 59.484 50.000 0.00 0.00 34.11 2.83
344 345 0.793104 GCGATTTCGTCCGCCTTTTG 60.793 55.000 1.55 0.00 45.06 2.44
345 346 1.500396 GCGATTTCGTCCGCCTTTT 59.500 52.632 1.55 0.00 45.06 2.27
346 347 3.174788 GCGATTTCGTCCGCCTTT 58.825 55.556 1.55 0.00 45.06 3.11
352 353 1.571215 AACCAACGGCGATTTCGTCC 61.571 55.000 16.62 1.69 41.58 4.79
353 354 0.236449 AAACCAACGGCGATTTCGTC 59.764 50.000 16.62 0.00 40.18 4.20
354 355 0.040781 CAAACCAACGGCGATTTCGT 60.041 50.000 16.62 0.00 43.14 3.85
355 356 0.727793 CCAAACCAACGGCGATTTCG 60.728 55.000 16.62 0.00 43.27 3.46
356 357 0.388006 CCCAAACCAACGGCGATTTC 60.388 55.000 16.62 0.00 0.00 2.17
357 358 1.110518 ACCCAAACCAACGGCGATTT 61.111 50.000 16.62 5.62 0.00 2.17
358 359 1.520600 GACCCAAACCAACGGCGATT 61.521 55.000 16.62 0.55 0.00 3.34
359 360 1.969589 GACCCAAACCAACGGCGAT 60.970 57.895 16.62 0.00 0.00 4.58
360 361 2.592287 GACCCAAACCAACGGCGA 60.592 61.111 16.62 0.00 0.00 5.54
361 362 4.020378 CGACCCAAACCAACGGCG 62.020 66.667 4.80 4.80 0.00 6.46
362 363 4.337060 GCGACCCAAACCAACGGC 62.337 66.667 0.00 0.00 0.00 5.68
363 364 3.666253 GGCGACCCAAACCAACGG 61.666 66.667 0.00 0.00 0.00 4.44
375 376 1.519455 CAACTCTCCGATGGGCGAC 60.519 63.158 0.00 0.00 44.57 5.19
376 377 2.892640 CAACTCTCCGATGGGCGA 59.107 61.111 0.00 0.00 44.57 5.54
377 378 2.892425 GCAACTCTCCGATGGGCG 60.892 66.667 0.00 0.00 40.47 6.13
378 379 1.522580 GAGCAACTCTCCGATGGGC 60.523 63.158 0.00 0.00 35.77 5.36
379 380 0.179089 CTGAGCAACTCTCCGATGGG 60.179 60.000 0.00 0.00 41.18 4.00
380 381 0.179089 CCTGAGCAACTCTCCGATGG 60.179 60.000 0.00 0.00 41.18 3.51
381 382 0.534412 ACCTGAGCAACTCTCCGATG 59.466 55.000 0.00 0.00 41.18 3.84
382 383 1.066573 CAACCTGAGCAACTCTCCGAT 60.067 52.381 0.00 0.00 41.18 4.18
383 384 0.318441 CAACCTGAGCAACTCTCCGA 59.682 55.000 0.00 0.00 41.18 4.55
384 385 1.294659 GCAACCTGAGCAACTCTCCG 61.295 60.000 0.00 0.00 41.18 4.63
385 386 0.250467 TGCAACCTGAGCAACTCTCC 60.250 55.000 0.00 0.00 41.18 3.71
386 387 0.871057 GTGCAACCTGAGCAACTCTC 59.129 55.000 0.00 0.00 44.64 3.20
387 388 0.882042 CGTGCAACCTGAGCAACTCT 60.882 55.000 0.00 0.00 44.64 3.24
388 389 0.880278 TCGTGCAACCTGAGCAACTC 60.880 55.000 0.00 0.00 44.64 3.01
389 390 0.882042 CTCGTGCAACCTGAGCAACT 60.882 55.000 0.00 0.00 44.64 3.16
390 391 1.571460 CTCGTGCAACCTGAGCAAC 59.429 57.895 0.00 0.00 44.64 4.17
391 392 4.047834 CTCGTGCAACCTGAGCAA 57.952 55.556 0.00 0.00 44.64 3.91
394 395 3.114616 CGGCTCGTGCAACCTGAG 61.115 66.667 12.07 0.00 41.91 3.35
395 396 3.573772 CTCGGCTCGTGCAACCTGA 62.574 63.158 12.07 0.33 41.91 3.86
396 397 3.114616 CTCGGCTCGTGCAACCTG 61.115 66.667 12.07 0.00 41.91 4.00
397 398 3.575351 GACTCGGCTCGTGCAACCT 62.575 63.158 12.07 0.00 41.91 3.50
398 399 3.112709 GACTCGGCTCGTGCAACC 61.113 66.667 12.07 0.00 41.91 3.77
399 400 2.355837 TGACTCGGCTCGTGCAAC 60.356 61.111 12.07 0.00 41.91 4.17
400 401 2.049156 CTGACTCGGCTCGTGCAA 60.049 61.111 12.07 0.00 41.91 4.08
401 402 2.982744 CTCTGACTCGGCTCGTGCA 61.983 63.158 12.07 0.00 41.91 4.57
437 438 3.062909 GTCGTTTATGGCGAGTAAATGCA 59.937 43.478 0.00 0.00 39.14 3.96
438 439 3.604392 GTCGTTTATGGCGAGTAAATGC 58.396 45.455 0.00 0.00 39.14 3.56
439 440 3.839954 GCGTCGTTTATGGCGAGTAAATG 60.840 47.826 0.00 0.00 39.14 2.32
440 441 2.283351 GCGTCGTTTATGGCGAGTAAAT 59.717 45.455 0.00 0.00 39.14 1.40
441 442 1.655099 GCGTCGTTTATGGCGAGTAAA 59.345 47.619 0.00 0.00 39.14 2.01
442 443 1.270971 GCGTCGTTTATGGCGAGTAA 58.729 50.000 0.00 0.00 39.14 2.24
443 444 0.170784 TGCGTCGTTTATGGCGAGTA 59.829 50.000 0.00 0.00 39.14 2.59
444 445 1.076533 CTGCGTCGTTTATGGCGAGT 61.077 55.000 0.00 0.00 39.14 4.18
445 446 1.076533 ACTGCGTCGTTTATGGCGAG 61.077 55.000 0.00 0.00 39.14 5.03
446 447 1.074319 GACTGCGTCGTTTATGGCGA 61.074 55.000 0.00 0.00 35.89 5.54
447 448 1.343821 GACTGCGTCGTTTATGGCG 59.656 57.895 0.00 0.00 0.00 5.69
448 449 1.702491 GGGACTGCGTCGTTTATGGC 61.702 60.000 0.00 0.00 32.65 4.40
449 450 1.418342 CGGGACTGCGTCGTTTATGG 61.418 60.000 0.00 0.00 32.65 2.74
450 451 1.995991 CGGGACTGCGTCGTTTATG 59.004 57.895 0.00 0.00 32.65 1.90
475 485 3.901797 GAGCCAGTGTTCGGTGGGG 62.902 68.421 0.00 0.00 34.06 4.96
505 515 3.047280 CGCCCGTGCTTGCAGTAA 61.047 61.111 0.00 0.00 34.43 2.24
512 522 4.473520 CTGATCCCGCCCGTGCTT 62.474 66.667 0.00 0.00 34.43 3.91
538 548 3.662759 ACTCTGTGAACCCAGGAAAAA 57.337 42.857 0.00 0.00 33.14 1.94
539 549 4.781775 TTACTCTGTGAACCCAGGAAAA 57.218 40.909 0.00 0.00 33.14 2.29
540 550 4.993705 ATTACTCTGTGAACCCAGGAAA 57.006 40.909 0.00 0.00 33.14 3.13
541 551 4.993705 AATTACTCTGTGAACCCAGGAA 57.006 40.909 0.00 0.00 33.14 3.36
542 552 5.546499 AGTTAATTACTCTGTGAACCCAGGA 59.454 40.000 0.00 0.00 33.14 3.86
543 553 5.805728 AGTTAATTACTCTGTGAACCCAGG 58.194 41.667 0.00 0.00 33.14 4.45
572 582 2.280797 GGCTGGAAGTGTGTCGCA 60.281 61.111 0.00 0.00 35.30 5.10
575 585 0.536006 AGCTTGGCTGGAAGTGTGTC 60.536 55.000 0.00 0.00 37.57 3.67
587 597 0.036388 TGTAGTGGCAGTAGCTTGGC 60.036 55.000 1.37 5.05 43.38 4.52
591 601 0.608640 GTGGTGTAGTGGCAGTAGCT 59.391 55.000 1.37 0.00 41.70 3.32
592 602 0.736325 CGTGGTGTAGTGGCAGTAGC 60.736 60.000 1.37 0.00 41.10 3.58
593 603 0.736325 GCGTGGTGTAGTGGCAGTAG 60.736 60.000 1.37 0.00 0.00 2.57
594 604 1.290955 GCGTGGTGTAGTGGCAGTA 59.709 57.895 0.00 0.00 0.00 2.74
595 605 2.030562 GCGTGGTGTAGTGGCAGT 59.969 61.111 0.00 0.00 0.00 4.40
596 606 2.029288 CTGCGTGGTGTAGTGGCAG 61.029 63.158 0.00 0.00 44.19 4.85
597 607 2.030412 CTGCGTGGTGTAGTGGCA 59.970 61.111 0.00 0.00 0.00 4.92
598 608 3.423154 GCTGCGTGGTGTAGTGGC 61.423 66.667 0.00 0.00 32.10 5.01
600 610 1.862123 CTTGCTGCGTGGTGTAGTG 59.138 57.895 0.00 0.00 32.10 2.74
601 611 1.961277 GCTTGCTGCGTGGTGTAGT 60.961 57.895 0.00 0.00 32.10 2.73
618 635 2.380084 TCGGTGAGTATTTGTGGAGC 57.620 50.000 0.00 0.00 0.00 4.70
621 638 1.670811 GGCATCGGTGAGTATTTGTGG 59.329 52.381 0.00 0.00 0.00 4.17
628 645 0.102300 CGTGATGGCATCGGTGAGTA 59.898 55.000 21.65 0.04 0.00 2.59
630 647 1.884464 CCGTGATGGCATCGGTGAG 60.884 63.158 21.65 10.81 39.51 3.51
632 649 2.304901 TACCCGTGATGGCATCGGTG 62.305 60.000 26.25 18.82 42.30 4.94
634 651 1.300931 CTACCCGTGATGGCATCGG 60.301 63.158 21.65 19.70 43.30 4.18
635 652 0.179084 AACTACCCGTGATGGCATCG 60.179 55.000 21.65 11.90 35.87 3.84
636 653 1.940613 GAAACTACCCGTGATGGCATC 59.059 52.381 20.52 20.52 35.87 3.91
637 654 1.280710 TGAAACTACCCGTGATGGCAT 59.719 47.619 0.00 0.00 35.87 4.40
638 655 0.687920 TGAAACTACCCGTGATGGCA 59.312 50.000 0.00 0.00 35.87 4.92
639 656 1.084289 GTGAAACTACCCGTGATGGC 58.916 55.000 0.00 0.00 35.87 4.40
653 670 6.716628 AGCAAGATAATGGAGTGAAAGTGAAA 59.283 34.615 0.00 0.00 0.00 2.69
654 671 6.240894 AGCAAGATAATGGAGTGAAAGTGAA 58.759 36.000 0.00 0.00 0.00 3.18
656 673 5.065731 GGAGCAAGATAATGGAGTGAAAGTG 59.934 44.000 0.00 0.00 0.00 3.16
658 675 5.188434 TGGAGCAAGATAATGGAGTGAAAG 58.812 41.667 0.00 0.00 0.00 2.62
666 691 3.552273 GCTGCAATGGAGCAAGATAATGG 60.552 47.826 21.74 0.00 45.13 3.16
689 714 1.220206 CGTGAAGAGCCCAGCAGAT 59.780 57.895 0.00 0.00 0.00 2.90
727 1334 1.677052 CTACGAGTTAGGTCTGGGCTC 59.323 57.143 0.00 0.00 0.00 4.70
728 1335 1.685491 CCTACGAGTTAGGTCTGGGCT 60.685 57.143 0.00 0.00 42.57 5.19
729 1336 0.745468 CCTACGAGTTAGGTCTGGGC 59.255 60.000 0.00 0.00 42.57 5.36
737 1344 1.281899 GCTGCTTGCCTACGAGTTAG 58.718 55.000 0.00 0.00 35.15 2.34
738 1345 0.606096 TGCTGCTTGCCTACGAGTTA 59.394 50.000 0.00 0.00 42.00 2.24
739 1346 0.671781 CTGCTGCTTGCCTACGAGTT 60.672 55.000 0.00 0.00 42.00 3.01
740 1347 1.079543 CTGCTGCTTGCCTACGAGT 60.080 57.895 0.00 0.00 42.00 4.18
741 1348 2.459442 GCTGCTGCTTGCCTACGAG 61.459 63.158 8.53 0.00 42.00 4.18
742 1349 2.434884 GCTGCTGCTTGCCTACGA 60.435 61.111 8.53 0.00 42.00 3.43
743 1350 2.743538 TGCTGCTGCTTGCCTACG 60.744 61.111 17.00 0.00 42.00 3.51
744 1351 1.673665 AGTGCTGCTGCTTGCCTAC 60.674 57.895 17.00 5.32 42.00 3.18
745 1352 1.673337 CAGTGCTGCTGCTTGCCTA 60.673 57.895 17.00 0.00 42.00 3.93
766 1373 0.179070 TCGTGCCACTACTGTTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
779 1386 2.747855 CCTTTGCCCTCTCGTGCC 60.748 66.667 0.00 0.00 0.00 5.01
784 1394 1.021920 GCTTCGTCCTTTGCCCTCTC 61.022 60.000 0.00 0.00 0.00 3.20
828 1438 1.379044 GTGGGGATGGGTGCAAGAG 60.379 63.158 0.00 0.00 0.00 2.85
830 1445 2.362889 GGTGGGGATGGGTGCAAG 60.363 66.667 0.00 0.00 0.00 4.01
890 1513 1.856012 GACAAGTGACAGTGCGAGC 59.144 57.895 0.00 0.00 0.00 5.03
1202 1839 1.339151 CGGAGGAGGGAAAAGGAGTTG 60.339 57.143 0.00 0.00 0.00 3.16
1261 1901 0.320247 AGAAACAGCAGCGTCAGAGG 60.320 55.000 0.00 0.00 0.00 3.69
1293 1933 4.609018 CCCCTGCCGTCCATAGCG 62.609 72.222 0.00 0.00 0.00 4.26
1295 1935 1.458777 TACCCCCTGCCGTCCATAG 60.459 63.158 0.00 0.00 0.00 2.23
1297 1937 3.087906 GTACCCCCTGCCGTCCAT 61.088 66.667 0.00 0.00 0.00 3.41
1608 2248 0.476808 TGTCCTTCTTGGGCCCCTTA 60.477 55.000 22.27 3.36 40.46 2.69
1647 2287 1.227999 CCTTTTTCCTCGCACTCGCA 61.228 55.000 0.00 0.00 38.40 5.10
1648 2288 1.228657 ACCTTTTTCCTCGCACTCGC 61.229 55.000 0.00 0.00 35.26 5.03
1649 2289 0.512952 CACCTTTTTCCTCGCACTCG 59.487 55.000 0.00 0.00 0.00 4.18
1650 2290 0.238553 GCACCTTTTTCCTCGCACTC 59.761 55.000 0.00 0.00 0.00 3.51
1651 2291 1.507141 CGCACCTTTTTCCTCGCACT 61.507 55.000 0.00 0.00 0.00 4.40
1652 2292 1.082104 CGCACCTTTTTCCTCGCAC 60.082 57.895 0.00 0.00 0.00 5.34
1701 2347 4.621274 CGCATTCCAATCCAAATCCAAGTT 60.621 41.667 0.00 0.00 0.00 2.66
1774 2420 2.159184 TGCTTCACAGAGCTCGGATAAG 60.159 50.000 21.22 20.45 43.11 1.73
1777 2423 0.610174 TTGCTTCACAGAGCTCGGAT 59.390 50.000 21.22 0.84 43.11 4.18
1834 2480 0.309922 CATTGCGCTGGATCCACATC 59.690 55.000 11.44 2.83 0.00 3.06
1882 2528 8.750298 TCTGATTGTTAGAGGTTAGAAGGTTAG 58.250 37.037 0.00 0.00 0.00 2.34
1918 2571 0.895559 GCCTTTGTGTGGGGAAGAGG 60.896 60.000 0.00 0.00 0.00 3.69
1922 2575 2.203422 CCGCCTTTGTGTGGGGAA 60.203 61.111 0.00 0.00 39.53 3.97
1986 2642 2.549563 CCCATAGATGCTGAAGCGATGT 60.550 50.000 0.00 0.00 45.83 3.06
1988 2644 1.696336 ACCCATAGATGCTGAAGCGAT 59.304 47.619 0.00 0.00 45.83 4.58
1996 2652 3.255032 GGGCCACCCATAGATGCT 58.745 61.111 4.39 0.00 44.65 3.79
2012 2668 2.599645 ATTACTGAGGCTGCCGCTGG 62.600 60.000 27.24 19.67 36.09 4.85
2014 2670 1.144936 GATTACTGAGGCTGCCGCT 59.855 57.895 22.83 6.69 36.09 5.52
2081 2737 3.653344 CTGCTAACACTTCTAGCACACA 58.347 45.455 0.50 0.00 45.24 3.72
2121 2784 2.224475 CCATCATCATCCTCACCCAGAC 60.224 54.545 0.00 0.00 0.00 3.51
2127 2790 3.737850 GAAGGTCCATCATCATCCTCAC 58.262 50.000 0.00 0.00 0.00 3.51
2368 3040 1.447489 CAAGGACGAGAGCAGCCAG 60.447 63.158 0.00 0.00 0.00 4.85
2445 3322 7.095565 TGCAAATCATCAATACAAGCTTGTTTG 60.096 33.333 35.20 31.40 42.35 2.93
2513 3391 1.133790 ACGGACCGACATACTGCTTAC 59.866 52.381 23.38 0.00 0.00 2.34
2552 3430 3.075148 GGAAGTAAGGGAGCAAGAACAC 58.925 50.000 0.00 0.00 0.00 3.32
2649 3527 0.169230 ACACTGCGACGTTTTGCAAA 59.831 45.000 8.05 8.05 41.91 3.68
2651 3529 1.007580 TTACACTGCGACGTTTTGCA 58.992 45.000 10.09 10.09 40.09 4.08
2774 3690 4.716784 AGTGAGATAGCCTTCACATGGTAA 59.283 41.667 0.00 0.00 35.73 2.85
2777 3693 3.834489 AGTGAGATAGCCTTCACATGG 57.166 47.619 0.00 0.00 35.73 3.66
2778 3694 6.154203 TCTAAGTGAGATAGCCTTCACATG 57.846 41.667 7.29 0.00 35.73 3.21
2973 3890 4.843220 ACTGACTTCTTGCTTCCATTTG 57.157 40.909 0.00 0.00 0.00 2.32
3073 3990 7.917505 GTGACATCAGAGTTTTTCAGAAATGTT 59.082 33.333 0.00 0.00 0.00 2.71
3118 4035 9.636965 GAAAAAGTAACATGTTTTGATTTGAGC 57.363 29.630 17.78 4.37 0.00 4.26
3504 4421 2.152016 GGAAGTTAACACCAGCAGACC 58.848 52.381 8.61 0.00 0.00 3.85
3562 4479 4.067896 TCATCTGACAGTTTTCTTCAGCC 58.932 43.478 1.59 0.00 36.25 4.85
3725 4644 4.279420 AGCAATCAACCTTTCCTGAAGAAC 59.721 41.667 0.00 0.00 37.57 3.01
3922 4843 3.243359 ACCCTGACAAATTCACCATGT 57.757 42.857 0.00 0.00 0.00 3.21
4171 5140 1.078848 GCTGGGACGCTGTCTGAAT 60.079 57.895 8.26 0.00 32.47 2.57
4208 5177 3.106054 TGCTGGGAATTGCATGGTTATT 58.894 40.909 0.00 0.00 33.94 1.40
4244 5213 0.955919 GAACTCCCTTGCTGGTTCCG 60.956 60.000 0.00 0.00 33.98 4.30
4264 5233 2.125952 GCGCCCAAACATTGCTCC 60.126 61.111 0.00 0.00 0.00 4.70
4383 5352 1.227527 CCCATTAGGCGCATCGTCA 60.228 57.895 10.83 0.00 32.13 4.35
4459 5428 7.278868 CGATCTTCAGCTCTAATTTGGTTACTT 59.721 37.037 0.00 0.00 0.00 2.24
4471 5440 5.448768 CGGAAAGTAACGATCTTCAGCTCTA 60.449 44.000 0.00 0.00 0.00 2.43
4488 5457 2.046314 CGCACATCCCCGGAAAGT 60.046 61.111 0.73 0.00 0.00 2.66
4505 5474 2.053627 CAATTGCGGAGAAACTTGTGC 58.946 47.619 0.00 0.00 0.00 4.57
4542 5511 0.813184 AAATGTTGCAGCGGGATCAG 59.187 50.000 0.00 0.00 0.00 2.90
4549 5518 4.484236 TCAAAATCCTAAATGTTGCAGCG 58.516 39.130 0.00 0.00 0.00 5.18
4640 5613 6.073548 CGACTCTGATTACTTTTGCTGAAACT 60.074 38.462 0.00 0.00 0.00 2.66
4678 5652 2.441164 ACCTTGTTTGGCACGGCA 60.441 55.556 0.00 0.00 39.88 5.69
5097 6071 2.203070 CTAGTGGCCGGGATGCAC 60.203 66.667 2.18 0.00 0.00 4.57
5464 6442 1.228657 GCCCACTGTTGAGACGAACC 61.229 60.000 0.00 0.00 0.00 3.62
5509 6487 2.427506 AGAATTGTTTCAGGTCCGCTC 58.572 47.619 0.00 0.00 34.08 5.03
5746 6724 1.598962 GCAGCTTCAGCACAGGTCA 60.599 57.895 0.75 0.00 45.16 4.02
5811 6796 4.075682 TCAGGATTAGCTAGTCCGATGAG 58.924 47.826 24.85 15.39 37.20 2.90
5812 6797 4.100279 TCAGGATTAGCTAGTCCGATGA 57.900 45.455 24.85 21.20 37.20 2.92
5813 6798 4.520874 TCTTCAGGATTAGCTAGTCCGATG 59.479 45.833 24.85 23.13 37.20 3.84
5814 6799 4.730966 TCTTCAGGATTAGCTAGTCCGAT 58.269 43.478 24.85 9.90 37.20 4.18
5815 6800 4.166246 TCTTCAGGATTAGCTAGTCCGA 57.834 45.455 24.85 21.49 37.20 4.55
5816 6801 4.920640 TTCTTCAGGATTAGCTAGTCCG 57.079 45.455 24.85 19.95 37.20 4.79
6120 7111 6.642683 ATCGATCGAAAACAAACTAACGAT 57.357 33.333 23.50 0.00 41.83 3.73
6239 7230 3.049912 GCCAAAATCACACGAGGAAAAC 58.950 45.455 0.00 0.00 0.00 2.43
6248 7239 1.269726 CCACCACAGCCAAAATCACAC 60.270 52.381 0.00 0.00 0.00 3.82
6261 7252 0.036765 GGCTTCGTATCACCACCACA 60.037 55.000 0.00 0.00 0.00 4.17
6289 7280 1.180907 TGCAGCAACAACACAAGGAA 58.819 45.000 0.00 0.00 0.00 3.36
6291 7282 2.129607 GAATGCAGCAACAACACAAGG 58.870 47.619 0.00 0.00 0.00 3.61
6292 7283 2.129607 GGAATGCAGCAACAACACAAG 58.870 47.619 0.00 0.00 0.00 3.16
6293 7284 1.755959 AGGAATGCAGCAACAACACAA 59.244 42.857 0.00 0.00 0.00 3.33
6294 7285 1.401761 AGGAATGCAGCAACAACACA 58.598 45.000 0.00 0.00 0.00 3.72
6295 7286 2.665519 CGTAGGAATGCAGCAACAACAC 60.666 50.000 0.00 0.00 0.00 3.32
6296 7287 1.535028 CGTAGGAATGCAGCAACAACA 59.465 47.619 0.00 0.00 0.00 3.33
6297 7288 1.729149 GCGTAGGAATGCAGCAACAAC 60.729 52.381 0.00 0.00 37.58 3.32
6298 7289 0.521291 GCGTAGGAATGCAGCAACAA 59.479 50.000 0.00 0.00 37.58 2.83
6299 7290 0.605050 TGCGTAGGAATGCAGCAACA 60.605 50.000 0.00 0.00 42.73 3.33
6300 7291 2.170738 TGCGTAGGAATGCAGCAAC 58.829 52.632 0.00 0.00 42.73 4.17
6301 7292 4.711892 TGCGTAGGAATGCAGCAA 57.288 50.000 0.00 0.00 42.73 3.91
6323 7314 4.836825 TGGGAGAATTTAGTCTGCAGAAG 58.163 43.478 20.19 0.00 37.69 2.85
6326 7317 4.326826 TGTTGGGAGAATTTAGTCTGCAG 58.673 43.478 7.63 7.63 37.69 4.41
6346 7337 7.141363 GCAGTTCACAGAATTCATTAGTTTGT 58.859 34.615 8.44 0.00 0.00 2.83
6421 7414 2.333926 TGTACTACGATTGTGCAGCAC 58.666 47.619 19.37 19.37 34.56 4.40
6459 7452 4.009675 TCTTGCTCAGTTCACAGTGTTTT 58.990 39.130 0.00 0.00 0.00 2.43
6462 7455 2.432146 TCTCTTGCTCAGTTCACAGTGT 59.568 45.455 0.00 0.00 0.00 3.55
6477 7470 6.728200 TGAATTTTGCAACTGTACTCTCTTG 58.272 36.000 0.00 0.00 0.00 3.02
6483 7476 4.554723 GCGTCTGAATTTTGCAACTGTACT 60.555 41.667 0.00 0.00 0.00 2.73
6532 7528 0.036952 ACTTCTGATCCTGCGGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
6550 7546 3.741344 GTGTCGGTGAAGGATATGCATAC 59.259 47.826 8.99 3.26 0.00 2.39
6561 7557 3.637714 CCGTTGGTGTCGGTGAAG 58.362 61.111 0.00 0.00 42.62 3.02
6600 7596 2.783288 CCTCTAGCCCGGTCGTTCC 61.783 68.421 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.