Multiple sequence alignment - TraesCS1D01G341000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G341000 chr1D 100.000 8961 0 0 1 8961 430573413 430564453 0.000000e+00 16548.0
1 TraesCS1D01G341000 chr1D 86.158 773 92 12 788 1558 376058133 376057374 0.000000e+00 821.0
2 TraesCS1D01G341000 chr1D 84.407 776 106 12 787 1558 376066358 376065594 0.000000e+00 749.0
3 TraesCS1D01G341000 chr1D 84.884 258 33 2 5895 6152 430569589 430569338 1.150000e-63 255.0
4 TraesCS1D01G341000 chr1D 73.313 652 139 29 4580 5212 430566492 430565857 3.280000e-49 207.0
5 TraesCS1D01G341000 chr1D 73.313 652 139 29 6922 7557 430568834 430568202 3.280000e-49 207.0
6 TraesCS1D01G341000 chr1D 82.946 129 22 0 5563 5691 430569627 430569499 5.680000e-22 117.0
7 TraesCS1D01G341000 chr1A 94.468 8460 283 53 545 8961 528673284 528664967 0.000000e+00 12859.0
8 TraesCS1D01G341000 chr1A 95.513 468 20 1 1 468 528673750 528673284 0.000000e+00 747.0
9 TraesCS1D01G341000 chr1A 87.108 574 67 5 788 1361 475305167 475304601 2.110000e-180 643.0
10 TraesCS1D01G341000 chr1A 85.837 233 30 1 5896 6128 528670045 528669816 2.500000e-60 244.0
11 TraesCS1D01G341000 chr1A 74.423 563 107 27 5002 5548 528666554 528666013 3.280000e-49 207.0
12 TraesCS1D01G341000 chr1A 82.171 129 23 0 5563 5691 528670084 528669956 2.640000e-20 111.0
13 TraesCS1D01G341000 chr1A 86.667 75 7 2 6461 6534 350162571 350162499 7.460000e-11 80.5
14 TraesCS1D01G341000 chr1B 97.778 7245 128 18 1 7238 581699394 581692176 0.000000e+00 12456.0
15 TraesCS1D01G341000 chr1B 94.114 1699 76 11 7265 8961 581692180 581690504 0.000000e+00 2562.0
16 TraesCS1D01G341000 chr1B 86.435 575 69 7 788 1361 502631982 502631416 9.880000e-174 621.0
17 TraesCS1D01G341000 chr1B 84.884 258 33 2 5895 6152 581695572 581695321 1.150000e-63 255.0
18 TraesCS1D01G341000 chr1B 84.977 213 26 5 5002 5212 581692096 581691888 2.530000e-50 211.0
19 TraesCS1D01G341000 chr1B 72.471 603 102 43 7261 7840 581694476 581693915 1.570000e-27 135.0
20 TraesCS1D01G341000 chr1B 82.946 129 22 0 5563 5691 581695610 581695482 5.680000e-22 117.0
21 TraesCS1D01G341000 chr3B 82.767 2356 316 44 2299 4615 679517 677213 0.000000e+00 2019.0
22 TraesCS1D01G341000 chr3B 86.595 1201 137 11 2873 4063 921195 922381 0.000000e+00 1304.0
23 TraesCS1D01G341000 chr3B 82.166 1071 135 28 638 1669 919041 920094 0.000000e+00 869.0
24 TraesCS1D01G341000 chr3B 81.869 1070 145 22 2928 3986 611879 612910 0.000000e+00 856.0
25 TraesCS1D01G341000 chr3B 87.483 743 87 4 2873 3613 904748 905486 0.000000e+00 852.0
26 TraesCS1D01G341000 chr3B 82.659 692 91 14 7318 7987 676296 675612 3.600000e-163 586.0
27 TraesCS1D01G341000 chr3B 81.268 694 85 23 4110 4791 906565 907225 3.710000e-143 520.0
28 TraesCS1D01G341000 chr3B 81.268 694 85 23 4110 4791 922380 923040 3.710000e-143 520.0
29 TraesCS1D01G341000 chr3B 75.983 916 147 49 7623 8506 571895 572769 1.080000e-108 405.0
30 TraesCS1D01G341000 chr3B 79.275 579 53 35 2165 2706 920366 920914 8.620000e-90 342.0
31 TraesCS1D01G341000 chr3B 80.429 373 47 16 100 464 110455264 110454910 2.480000e-65 261.0
32 TraesCS1D01G341000 chr3B 89.205 176 19 0 7097 7272 676467 676292 4.210000e-53 220.0
33 TraesCS1D01G341000 chr3B 85.000 200 28 2 5890 6087 906321 906520 1.530000e-47 202.0
34 TraesCS1D01G341000 chr3B 85.000 200 28 2 5890 6087 922136 922335 1.530000e-47 202.0
35 TraesCS1D01G341000 chr3B 82.158 241 36 4 7645 7880 907447 907685 5.490000e-47 200.0
36 TraesCS1D01G341000 chr3B 81.743 241 37 4 7645 7880 923262 923500 2.550000e-45 195.0
37 TraesCS1D01G341000 chr3B 86.188 181 23 2 6536 6715 544928724 544928545 2.550000e-45 195.0
38 TraesCS1D01G341000 chr3B 80.224 268 39 8 6460 6715 250139395 250139130 1.190000e-43 189.0
39 TraesCS1D01G341000 chr3B 85.083 181 25 2 6536 6715 544836353 544836174 5.530000e-42 183.0
40 TraesCS1D01G341000 chr3B 85.065 154 21 2 6895 7047 676621 676469 1.200000e-33 156.0
41 TraesCS1D01G341000 chr3B 83.908 87 4 1 2796 2882 920970 921046 3.470000e-09 75.0
42 TraesCS1D01G341000 chr3A 86.279 1873 196 25 2165 4017 1209555 1211386 0.000000e+00 1978.0
43 TraesCS1D01G341000 chr3A 83.103 870 119 12 813 1669 1200567 1201421 0.000000e+00 767.0
44 TraesCS1D01G341000 chr3A 76.471 1513 235 74 7042 8507 1067426 1068864 0.000000e+00 710.0
45 TraesCS1D01G341000 chr3A 79.368 475 69 16 1 466 77545462 77545008 3.140000e-79 307.0
46 TraesCS1D01G341000 chr3A 85.354 198 28 1 5890 6087 1211190 1211386 4.240000e-48 204.0
47 TraesCS1D01G341000 chrUn 86.203 1725 199 20 2508 4220 31955838 31954141 0.000000e+00 1831.0
48 TraesCS1D01G341000 chrUn 86.872 1135 124 12 2850 3983 31996338 31997448 0.000000e+00 1247.0
49 TraesCS1D01G341000 chrUn 86.696 1135 123 15 2850 3983 269076889 269075782 0.000000e+00 1234.0
50 TraesCS1D01G341000 chrUn 82.260 1071 134 28 638 1669 321410780 321409727 0.000000e+00 874.0
51 TraesCS1D01G341000 chrUn 82.770 621 69 22 2200 2806 31995740 31996336 3.710000e-143 520.0
52 TraesCS1D01G341000 chrUn 82.126 621 73 22 2200 2806 269077487 269076891 1.740000e-136 497.0
53 TraesCS1D01G341000 chrUn 80.923 650 71 21 7314 7934 31870652 31871277 1.760000e-126 464.0
54 TraesCS1D01G341000 chrUn 87.622 307 29 4 7318 7617 31948343 31948039 1.850000e-91 348.0
55 TraesCS1D01G341000 chrUn 79.275 579 53 35 2165 2706 321409455 321408907 8.620000e-90 342.0
56 TraesCS1D01G341000 chrUn 83.110 373 41 14 2437 2806 401018626 401018979 4.040000e-83 320.0
57 TraesCS1D01G341000 chrUn 80.605 397 68 3 6585 6980 31953284 31952896 1.890000e-76 298.0
58 TraesCS1D01G341000 chrUn 81.395 129 24 0 5563 5691 31997252 31997380 1.230000e-18 106.0
59 TraesCS1D01G341000 chrUn 81.395 129 24 0 5563 5691 269075978 269075850 1.230000e-18 106.0
60 TraesCS1D01G341000 chrUn 81.395 129 24 0 5563 5691 401019892 401020020 1.230000e-18 106.0
61 TraesCS1D01G341000 chrUn 83.908 87 4 1 2796 2882 321408851 321408775 3.470000e-09 75.0
62 TraesCS1D01G341000 chr3D 88.286 1400 144 12 2832 4220 3780198 3781588 0.000000e+00 1659.0
63 TraesCS1D01G341000 chr3D 77.152 1313 179 67 7036 8312 3856721 3855494 0.000000e+00 651.0
64 TraesCS1D01G341000 chr3D 80.739 758 90 29 7042 7780 3908225 3907505 2.850000e-149 540.0
65 TraesCS1D01G341000 chr3D 83.125 480 62 10 4300 4774 3781586 3782051 3.870000e-113 420.0
66 TraesCS1D01G341000 chr3D 79.138 580 85 18 7436 7987 3902878 3902307 1.420000e-97 368.0
67 TraesCS1D01G341000 chr3D 80.083 482 65 14 7532 7987 3891481 3891005 6.710000e-86 329.0
68 TraesCS1D01G341000 chr3D 84.918 305 34 7 7318 7617 3782963 3783260 1.890000e-76 298.0
69 TraesCS1D01G341000 chr3D 79.095 464 70 16 1 455 66526529 66526084 2.450000e-75 294.0
70 TraesCS1D01G341000 chr3D 83.083 266 31 9 6460 6715 171148373 171148112 7.000000e-56 230.0
71 TraesCS1D01G341000 chr3D 82.625 259 32 7 2141 2397 3779698 3779945 5.450000e-52 217.0
72 TraesCS1D01G341000 chr3D 83.871 186 27 3 6536 6719 418561632 418561448 3.330000e-39 174.0
73 TraesCS1D01G341000 chr3D 92.553 94 4 2 459 549 545547789 545547882 2.030000e-26 132.0
74 TraesCS1D01G341000 chr3D 84.615 130 18 2 5563 5691 3781150 3781278 2.630000e-25 128.0
75 TraesCS1D01G341000 chr3D 94.030 67 3 1 7909 7975 3783247 3783312 5.720000e-17 100.0
76 TraesCS1D01G341000 chr2B 82.938 211 25 6 6535 6743 728387545 728387746 7.150000e-41 180.0
77 TraesCS1D01G341000 chr7D 83.871 186 27 3 6531 6715 449232611 449232794 3.330000e-39 174.0
78 TraesCS1D01G341000 chr7D 92.632 95 3 2 462 553 485090875 485090968 5.640000e-27 134.0
79 TraesCS1D01G341000 chr7D 90.099 101 7 1 459 556 24045715 24045615 2.630000e-25 128.0
80 TraesCS1D01G341000 chr7D 86.842 76 7 2 6461 6535 72952271 72952344 2.070000e-11 82.4
81 TraesCS1D01G341000 chr7D 86.667 75 7 2 6461 6534 202244299 202244227 7.460000e-11 80.5
82 TraesCS1D01G341000 chr7D 85.897 78 8 2 6458 6534 436142518 436142593 7.460000e-11 80.5
83 TraesCS1D01G341000 chr7D 86.667 75 7 2 6461 6534 449593615 449593543 7.460000e-11 80.5
84 TraesCS1D01G341000 chr5D 94.565 92 2 1 461 549 373214568 373214659 1.210000e-28 139.0
85 TraesCS1D01G341000 chr4B 92.632 95 4 3 458 549 180553962 180553868 5.640000e-27 134.0
86 TraesCS1D01G341000 chr7A 91.667 96 5 1 460 552 136806195 136806100 7.300000e-26 130.0
87 TraesCS1D01G341000 chr4D 91.667 96 4 3 454 546 225215515 225215609 7.300000e-26 130.0
88 TraesCS1D01G341000 chr4D 89.320 103 6 3 465 563 403409531 403409632 3.400000e-24 124.0
89 TraesCS1D01G341000 chr2D 88.158 76 6 2 6461 6535 518263458 518263531 4.460000e-13 87.9
90 TraesCS1D01G341000 chr6D 86.667 75 6 2 6461 6535 125088537 125088467 7.460000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G341000 chr1D 430564453 430573413 8960 True 16548.000000 16548 100.000000 1 8961 1 chr1D.!!$R3 8960
1 TraesCS1D01G341000 chr1D 376057374 376058133 759 True 821.000000 821 86.158000 788 1558 1 chr1D.!!$R1 770
2 TraesCS1D01G341000 chr1D 376065594 376066358 764 True 749.000000 749 84.407000 787 1558 1 chr1D.!!$R2 771
3 TraesCS1D01G341000 chr1A 528664967 528673284 8317 True 12859.000000 12859 94.468000 545 8961 1 chr1A.!!$R3 8416
4 TraesCS1D01G341000 chr1A 475304601 475305167 566 True 643.000000 643 87.108000 788 1361 1 chr1A.!!$R2 573
5 TraesCS1D01G341000 chr1A 528666013 528673750 7737 True 327.250000 747 84.486000 1 6128 4 chr1A.!!$R4 6127
6 TraesCS1D01G341000 chr1B 581690504 581699394 8890 True 5076.333333 12456 92.289667 1 8961 3 chr1B.!!$R2 8960
7 TraesCS1D01G341000 chr1B 502631416 502631982 566 True 621.000000 621 86.435000 788 1361 1 chr1B.!!$R1 573
8 TraesCS1D01G341000 chr3B 611879 612910 1031 False 856.000000 856 81.869000 2928 3986 1 chr3B.!!$F2 1058
9 TraesCS1D01G341000 chr3B 675612 679517 3905 True 745.250000 2019 84.924000 2299 7987 4 chr3B.!!$R5 5688
10 TraesCS1D01G341000 chr3B 919041 923500 4459 False 501.000000 1304 82.850714 638 7880 7 chr3B.!!$F4 7242
11 TraesCS1D01G341000 chr3B 904748 907685 2937 False 443.500000 852 83.977250 2873 7880 4 chr3B.!!$F3 5007
12 TraesCS1D01G341000 chr3B 571895 572769 874 False 405.000000 405 75.983000 7623 8506 1 chr3B.!!$F1 883
13 TraesCS1D01G341000 chr3A 1209555 1211386 1831 False 1091.000000 1978 85.816500 2165 6087 2 chr3A.!!$F3 3922
14 TraesCS1D01G341000 chr3A 1200567 1201421 854 False 767.000000 767 83.103000 813 1669 1 chr3A.!!$F2 856
15 TraesCS1D01G341000 chr3A 1067426 1068864 1438 False 710.000000 710 76.471000 7042 8507 1 chr3A.!!$F1 1465
16 TraesCS1D01G341000 chrUn 31952896 31955838 2942 True 1064.500000 1831 83.404000 2508 6980 2 chrUn.!!$R2 4472
17 TraesCS1D01G341000 chrUn 31995740 31997448 1708 False 624.333333 1247 83.679000 2200 5691 3 chrUn.!!$F2 3491
18 TraesCS1D01G341000 chrUn 269075782 269077487 1705 True 612.333333 1234 83.405667 2200 5691 3 chrUn.!!$R3 3491
19 TraesCS1D01G341000 chrUn 31870652 31871277 625 False 464.000000 464 80.923000 7314 7934 1 chrUn.!!$F1 620
20 TraesCS1D01G341000 chrUn 321408775 321410780 2005 True 430.333333 874 81.814333 638 2882 3 chrUn.!!$R4 2244
21 TraesCS1D01G341000 chrUn 401018626 401020020 1394 False 213.000000 320 82.252500 2437 5691 2 chrUn.!!$F3 3254
22 TraesCS1D01G341000 chr3D 3855494 3856721 1227 True 651.000000 651 77.152000 7036 8312 1 chr3D.!!$R1 1276
23 TraesCS1D01G341000 chr3D 3907505 3908225 720 True 540.000000 540 80.739000 7042 7780 1 chr3D.!!$R4 738
24 TraesCS1D01G341000 chr3D 3779698 3783312 3614 False 470.333333 1659 86.266500 2141 7975 6 chr3D.!!$F2 5834
25 TraesCS1D01G341000 chr3D 3902307 3902878 571 True 368.000000 368 79.138000 7436 7987 1 chr3D.!!$R3 551


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 575 0.106569 TGATATTGCTGGCCAGGTGG 60.107 55.000 33.46 10.38 38.53 4.61 F
715 717 1.258982 GCGCGTACCATTCTGAAGATG 59.741 52.381 8.43 0.00 0.00 2.90 F
2183 2278 2.218603 ACCGGCACAGAAGTACAAAAG 58.781 47.619 0.00 0.00 0.00 2.27 F
2505 2747 3.433598 GCAGAAGGGTATCCTATTGCACA 60.434 47.826 20.35 0.00 44.90 4.57 F
3013 3448 1.451936 AGCTTGAACGAGCCAAGGT 59.548 52.632 10.04 12.40 44.53 3.50 F
4385 5549 5.213868 TGGGGGTGGTTAACATGATTATT 57.786 39.130 8.10 0.00 0.00 1.40 F
5153 6392 1.335324 GCATGTGACAGTTGACTTGGC 60.335 52.381 0.00 0.00 0.00 4.52 F
5303 6542 0.038709 AGAGCTCAGACGCAACTCAC 60.039 55.000 17.77 0.00 0.00 3.51 F
5304 6543 0.319040 GAGCTCAGACGCAACTCACA 60.319 55.000 9.40 0.00 0.00 3.58 F
5305 6544 0.319728 AGCTCAGACGCAACTCACAT 59.680 50.000 0.00 0.00 0.00 3.21 F
7755 9068 0.407139 AGAACAAATGCCAGCCCTCT 59.593 50.000 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2305 2.610232 CGCCCAATTCAGGAACCTTTTG 60.610 50.000 0.00 0.0 0.00 2.44 R
2675 2922 1.772567 AGGGTGTGTGCCTGGGTTA 60.773 57.895 0.00 0.0 0.00 2.85 R
3013 3448 2.723586 TTTGCACCGCACGATCTCCA 62.724 55.000 0.00 0.0 38.71 3.86 R
4390 5554 3.641046 TGCATGCCCTGTTATGGTTATT 58.359 40.909 16.68 0.0 0.00 1.40 R
5141 6380 1.610038 TGCTCAATGCCAAGTCAACTG 59.390 47.619 0.00 0.0 42.00 3.16 R
5291 6530 1.070758 ACTTCCATGTGAGTTGCGTCT 59.929 47.619 0.00 0.0 0.00 4.18 R
6973 8261 1.406898 GCTTTCCCATAAGCCTGCTTC 59.593 52.381 7.81 0.0 43.69 3.86 R
7379 8674 3.056536 GCACGGCTAGGATATTGATCTGA 60.057 47.826 0.00 0.0 32.15 3.27 R
7756 9069 8.035984 GGGGTAGTATATCTTTGACTGCTATTC 58.964 40.741 0.00 0.0 0.00 1.75 R
7850 9172 0.685097 TCGCTACCTTTTGGACTGCT 59.315 50.000 0.00 0.0 44.07 4.24 R
8773 10129 0.391793 TGCGATGGCGTATTGGTTCA 60.392 50.000 0.00 0.0 44.10 3.18 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 3.243168 GGTGTTCGGTAGTTTTGGGTTTC 60.243 47.826 0.00 0.00 0.00 2.78
139 140 0.392461 TGTGCGGGCTTAGTGATTCC 60.392 55.000 0.00 0.00 0.00 3.01
217 218 5.663556 TGGTTTCTAGGGTTTTGATGGTTTT 59.336 36.000 0.00 0.00 0.00 2.43
251 252 1.063114 AGGTAGTCGGGGCTCTGTATT 60.063 52.381 0.00 0.00 0.00 1.89
302 303 5.237779 GGAAATCATAATTGCTTGCCATTGG 59.762 40.000 0.00 0.00 28.48 3.16
328 329 2.209690 TAGCCCTTGGGTAAGCAAAC 57.790 50.000 7.61 0.00 32.35 2.93
388 389 2.803492 GCTGTTCAAGTTCTGAGACGGT 60.803 50.000 0.00 0.00 34.81 4.83
467 468 6.067217 AGCTGTAGGATTGAAAATGGTACT 57.933 37.500 0.00 0.00 0.00 2.73
468 469 6.116126 AGCTGTAGGATTGAAAATGGTACTC 58.884 40.000 0.00 0.00 0.00 2.59
574 575 0.106569 TGATATTGCTGGCCAGGTGG 60.107 55.000 33.46 10.38 38.53 4.61
670 671 6.091577 CACATTCATTGCAACAATGTGCTATT 59.908 34.615 32.69 14.71 46.22 1.73
679 680 5.230726 GCAACAATGTGCTATTTAGATGTGC 59.769 40.000 0.00 0.00 41.51 4.57
715 717 1.258982 GCGCGTACCATTCTGAAGATG 59.741 52.381 8.43 0.00 0.00 2.90
1570 1624 4.460382 TCTCCTGAATTCACCTTTGCATTC 59.540 41.667 3.38 0.00 36.30 2.67
1603 1657 8.721133 AAGTTTCATTTGTTATTACCCCTTCT 57.279 30.769 0.00 0.00 0.00 2.85
1902 1970 3.296322 TTAAACAGCTGCCGGAAATTG 57.704 42.857 15.27 0.00 0.00 2.32
2079 2174 9.334693 CTGTTGCTTCTTGAAACACTTATATTC 57.665 33.333 0.00 0.00 39.19 1.75
2183 2278 2.218603 ACCGGCACAGAAGTACAAAAG 58.781 47.619 0.00 0.00 0.00 2.27
2379 2487 8.386606 GTTTGAGAAATACACTCATGAGTCATC 58.613 37.037 25.58 17.22 42.68 2.92
2425 2533 4.024556 CCATTAATTGCGATGTGAGTCTCC 60.025 45.833 0.00 0.00 0.00 3.71
2505 2747 3.433598 GCAGAAGGGTATCCTATTGCACA 60.434 47.826 20.35 0.00 44.90 4.57
2675 2922 6.276847 TGTGGCATTTTAACAACGAAGAAAT 58.723 32.000 0.00 0.00 0.00 2.17
2860 3133 8.133754 CATGAACATGCTTTCTTTTCTTTTGA 57.866 30.769 1.84 0.00 31.39 2.69
2942 3373 6.489675 CAGCGTGAGTTGCAATATAGAAATT 58.510 36.000 0.59 0.00 34.98 1.82
3013 3448 1.451936 AGCTTGAACGAGCCAAGGT 59.548 52.632 10.04 12.40 44.53 3.50
3257 3696 6.633500 TGTAGTTTGCAAGAAGCTACATTT 57.367 33.333 20.80 0.00 45.94 2.32
4385 5549 5.213868 TGGGGGTGGTTAACATGATTATT 57.786 39.130 8.10 0.00 0.00 1.40
4390 5554 6.266558 GGGGTGGTTAACATGATTATTATGCA 59.733 38.462 8.10 0.00 0.00 3.96
5141 6380 4.241590 TGAATTTCCAGTTGCATGTGAC 57.758 40.909 0.00 0.00 0.00 3.67
5142 6381 3.635836 TGAATTTCCAGTTGCATGTGACA 59.364 39.130 0.00 0.00 0.00 3.58
5143 6382 3.928727 ATTTCCAGTTGCATGTGACAG 57.071 42.857 0.00 0.00 0.00 3.51
5144 6383 2.346766 TTCCAGTTGCATGTGACAGT 57.653 45.000 0.00 0.00 0.00 3.55
5145 6384 2.346766 TCCAGTTGCATGTGACAGTT 57.653 45.000 0.00 0.00 0.00 3.16
5146 6385 1.948834 TCCAGTTGCATGTGACAGTTG 59.051 47.619 0.00 0.00 0.00 3.16
5147 6386 1.948834 CCAGTTGCATGTGACAGTTGA 59.051 47.619 0.00 0.00 0.00 3.18
5148 6387 2.287188 CCAGTTGCATGTGACAGTTGAC 60.287 50.000 0.00 0.00 0.00 3.18
5149 6388 2.615447 CAGTTGCATGTGACAGTTGACT 59.385 45.455 0.00 0.00 0.00 3.41
5150 6389 3.065786 CAGTTGCATGTGACAGTTGACTT 59.934 43.478 0.00 0.00 0.00 3.01
5151 6390 3.065786 AGTTGCATGTGACAGTTGACTTG 59.934 43.478 0.00 0.00 0.00 3.16
5152 6391 1.948834 TGCATGTGACAGTTGACTTGG 59.051 47.619 0.00 0.00 0.00 3.61
5153 6392 1.335324 GCATGTGACAGTTGACTTGGC 60.335 52.381 0.00 0.00 0.00 4.52
5154 6393 1.948834 CATGTGACAGTTGACTTGGCA 59.051 47.619 0.00 0.00 0.00 4.92
5155 6394 2.346766 TGTGACAGTTGACTTGGCAT 57.653 45.000 0.00 0.00 0.00 4.40
5156 6395 2.653726 TGTGACAGTTGACTTGGCATT 58.346 42.857 0.00 0.00 0.00 3.56
5157 6396 2.358582 TGTGACAGTTGACTTGGCATTG 59.641 45.455 0.00 0.00 0.00 2.82
5158 6397 2.618241 GTGACAGTTGACTTGGCATTGA 59.382 45.455 0.00 0.00 0.00 2.57
5159 6398 2.880268 TGACAGTTGACTTGGCATTGAG 59.120 45.455 0.00 0.00 0.00 3.02
5160 6399 1.610522 ACAGTTGACTTGGCATTGAGC 59.389 47.619 0.00 0.00 44.65 4.26
5291 6530 4.411927 ACAGTAGGAAGAAGAAGAGCTCA 58.588 43.478 17.77 0.00 0.00 4.26
5292 6531 4.462483 ACAGTAGGAAGAAGAAGAGCTCAG 59.538 45.833 17.77 0.00 0.00 3.35
5293 6532 4.704540 CAGTAGGAAGAAGAAGAGCTCAGA 59.295 45.833 17.77 0.00 0.00 3.27
5294 6533 4.705023 AGTAGGAAGAAGAAGAGCTCAGAC 59.295 45.833 17.77 6.60 0.00 3.51
5295 6534 2.491693 AGGAAGAAGAAGAGCTCAGACG 59.508 50.000 17.77 0.00 0.00 4.18
5296 6535 2.258755 GAAGAAGAAGAGCTCAGACGC 58.741 52.381 17.77 2.04 0.00 5.19
5297 6536 1.252175 AGAAGAAGAGCTCAGACGCA 58.748 50.000 17.77 0.00 0.00 5.24
5298 6537 1.615883 AGAAGAAGAGCTCAGACGCAA 59.384 47.619 17.77 0.00 0.00 4.85
5299 6538 1.724082 GAAGAAGAGCTCAGACGCAAC 59.276 52.381 17.77 0.00 0.00 4.17
5300 6539 0.965439 AGAAGAGCTCAGACGCAACT 59.035 50.000 17.77 0.28 0.00 3.16
5301 6540 1.067915 AGAAGAGCTCAGACGCAACTC 60.068 52.381 17.77 0.00 0.00 3.01
5302 6541 0.676184 AAGAGCTCAGACGCAACTCA 59.324 50.000 17.77 0.00 0.00 3.41
5303 6542 0.038709 AGAGCTCAGACGCAACTCAC 60.039 55.000 17.77 0.00 0.00 3.51
5304 6543 0.319040 GAGCTCAGACGCAACTCACA 60.319 55.000 9.40 0.00 0.00 3.58
5305 6544 0.319728 AGCTCAGACGCAACTCACAT 59.680 50.000 0.00 0.00 0.00 3.21
5306 6545 0.441533 GCTCAGACGCAACTCACATG 59.558 55.000 0.00 0.00 0.00 3.21
5307 6546 1.073964 CTCAGACGCAACTCACATGG 58.926 55.000 0.00 0.00 0.00 3.66
5308 6547 0.678950 TCAGACGCAACTCACATGGA 59.321 50.000 0.00 0.00 0.00 3.41
5309 6548 1.069978 TCAGACGCAACTCACATGGAA 59.930 47.619 0.00 0.00 0.00 3.53
5310 6549 1.462283 CAGACGCAACTCACATGGAAG 59.538 52.381 0.00 0.00 0.00 3.46
5311 6550 1.070758 AGACGCAACTCACATGGAAGT 59.929 47.619 0.00 0.00 0.00 3.01
5312 6551 1.873591 GACGCAACTCACATGGAAGTT 59.126 47.619 8.67 8.67 0.00 2.66
5313 6552 3.064207 GACGCAACTCACATGGAAGTTA 58.936 45.455 12.86 0.00 0.00 2.24
5314 6553 3.472652 ACGCAACTCACATGGAAGTTAA 58.527 40.909 12.86 0.00 0.00 2.01
5318 6557 5.106555 CGCAACTCACATGGAAGTTAAAGAT 60.107 40.000 12.86 0.00 0.00 2.40
5384 6647 2.880890 AGTGAAACAAGACACTGATGGC 59.119 45.455 0.00 0.00 44.18 4.40
5514 6777 5.126067 CCTCCTCGAAATATGTTGGAATGT 58.874 41.667 0.00 0.00 0.00 2.71
5568 6831 3.054361 GGGGCTAGAACCTGAAGATGAAA 60.054 47.826 0.00 0.00 0.00 2.69
5595 6858 7.244886 TCAGACTCTGATGACCTGAATTTTA 57.755 36.000 4.50 0.00 35.39 1.52
5666 6929 2.642311 TGACCTTGGATTACCTTCTGCA 59.358 45.455 0.00 0.00 37.04 4.41
5788 7066 5.251764 AGATGTGAAGGAGAAAGTTGATGG 58.748 41.667 0.00 0.00 0.00 3.51
5966 7244 3.024547 CGGATTACCTTCTGAGGACTCA 58.975 50.000 1.61 1.61 46.74 3.41
6382 7664 1.134753 TGTTTGCCTTGCTGTCAACTG 59.865 47.619 0.00 0.00 0.00 3.16
6781 8069 9.144747 CAGCATGATAAATAGTACCAGATACAC 57.855 37.037 0.00 0.00 39.69 2.90
6861 8149 6.916360 AAACTATTGCCCTCAATTTTCTGA 57.084 33.333 0.00 0.00 42.51 3.27
6973 8261 1.089920 CCTCTTCATGCTGAAACCGG 58.910 55.000 0.00 0.00 35.73 5.28
7585 8885 5.109210 CGTCACATAAGAGTAGCATCCAAA 58.891 41.667 0.00 0.00 0.00 3.28
7755 9068 0.407139 AGAACAAATGCCAGCCCTCT 59.593 50.000 0.00 0.00 0.00 3.69
7756 9069 0.529378 GAACAAATGCCAGCCCTCTG 59.471 55.000 0.00 0.00 40.02 3.35
7850 9172 2.231716 TACCTCCTCAAGCAGTGCTA 57.768 50.000 20.09 2.12 38.25 3.49
7855 9177 0.036577 CCTCAAGCAGTGCTAGCAGT 60.037 55.000 20.03 19.79 38.25 4.40
7975 9298 1.929836 GGCTGATGACGTTTCTAGCTG 59.070 52.381 13.08 0.00 0.00 4.24
8122 9449 1.069358 GGACTCCCGCTAAGAATCCTG 59.931 57.143 0.00 0.00 0.00 3.86
8149 9476 3.068732 TCCTCCAGATCGCAAGTGATAAG 59.931 47.826 0.00 0.00 39.48 1.73
8243 9570 4.621087 GCCTTGGGTGCCTTGGGT 62.621 66.667 0.00 0.00 0.00 4.51
8271 9598 5.355350 GCTGTCTCCTTAAATTATGCTGTGT 59.645 40.000 0.00 0.00 0.00 3.72
8272 9599 6.676456 GCTGTCTCCTTAAATTATGCTGTGTG 60.676 42.308 0.00 0.00 0.00 3.82
8341 9691 4.745649 ACTAGGTTGTTCAGCTTATCGTC 58.254 43.478 0.00 0.00 34.13 4.20
8396 9748 7.016153 TCCTTGGTACATGTTGTAATCTTCT 57.984 36.000 2.30 0.00 39.30 2.85
8422 9775 8.470805 TGTTTTTGCGGGAAATATATGTTGTAT 58.529 29.630 0.00 0.00 0.00 2.29
8546 9902 1.483415 TGGACGCCTTACCCAATACTC 59.517 52.381 0.00 0.00 0.00 2.59
8547 9903 1.483415 GGACGCCTTACCCAATACTCA 59.517 52.381 0.00 0.00 0.00 3.41
8575 9931 2.953466 ATGCCTGTTGAATCATGCAC 57.047 45.000 0.00 0.00 40.47 4.57
8577 9933 1.270274 TGCCTGTTGAATCATGCACAC 59.730 47.619 0.00 0.00 34.95 3.82
8616 9972 6.707440 TCTTTTTCTTGTTGGTATGCTGAA 57.293 33.333 0.00 0.00 0.00 3.02
8692 10048 9.567776 AAAAGTTTTGGTCCATTTTATAAAGGG 57.432 29.630 0.00 10.31 0.00 3.95
8693 10049 8.499288 AAGTTTTGGTCCATTTTATAAAGGGA 57.501 30.769 13.71 13.71 0.00 4.20
8744 10100 0.618458 TCCCTCTTTAACCATGCGCT 59.382 50.000 9.73 0.00 0.00 5.92
8746 10102 0.652592 CCTCTTTAACCATGCGCTCG 59.347 55.000 9.73 0.00 0.00 5.03
8789 10145 0.304705 CGCTGAACCAATACGCCATC 59.695 55.000 0.00 0.00 0.00 3.51
8867 10223 2.112815 GGCCCTTTCCGATTGTCCG 61.113 63.158 0.00 0.00 0.00 4.79
8884 10240 4.240049 GGTGTTCCGAGTGACGAC 57.760 61.111 0.00 0.00 45.77 4.34
8887 10243 2.254651 GTTCCGAGTGACGACGCT 59.745 61.111 0.00 0.00 45.77 5.07
8938 10294 1.106285 GTCAAATGGAGGATGGTGGC 58.894 55.000 0.00 0.00 0.00 5.01
8955 10311 2.125912 CGAGTCCCGCTCCACAAG 60.126 66.667 0.00 0.00 41.10 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
217 218 4.068599 CGACTACCTGATCTAGCATGAGA 58.931 47.826 0.00 0.00 0.00 3.27
251 252 1.202114 GCAATCAGCCGAATCAACCAA 59.798 47.619 0.00 0.00 37.23 3.67
302 303 4.143301 CCCAAGGGCTAAGGGGGC 62.143 72.222 0.00 0.00 38.98 5.80
307 308 2.492088 GTTTGCTTACCCAAGGGCTAAG 59.508 50.000 4.70 12.67 39.32 2.18
328 329 3.904136 AGTTGAAATCAGCCGAACTTG 57.096 42.857 0.00 0.00 0.00 3.16
388 389 2.754552 GCAGTTGGCACTATCCATGAAA 59.245 45.455 0.00 0.00 43.97 2.69
467 468 3.371965 GCTATATTATGGGACGGAGGGA 58.628 50.000 0.00 0.00 0.00 4.20
468 469 2.100916 CGCTATATTATGGGACGGAGGG 59.899 54.545 0.00 0.00 0.00 4.30
574 575 8.629158 TGAATGACAATAATTTATACCAGCACC 58.371 33.333 0.00 0.00 0.00 5.01
679 680 3.601981 GCCTACGAGCGATTCACG 58.398 61.111 0.00 0.00 45.66 4.35
691 692 0.101759 TCAGAATGGTACGCGCCTAC 59.898 55.000 5.73 4.68 36.16 3.18
715 717 8.879342 ATACAAGATGTGCTTCATACTAAGTC 57.121 34.615 0.00 0.00 36.83 3.01
1603 1657 8.891671 AACTAAAACACCTTATAGAACGAACA 57.108 30.769 0.00 0.00 0.00 3.18
1902 1970 7.041780 CCTGCCTACAATGTGTATTAGTTCATC 60.042 40.741 0.00 0.00 31.66 2.92
2079 2174 9.738832 TTAATTCACACATATGCAGATGAAATG 57.261 29.630 27.19 19.45 30.46 2.32
2210 2305 2.610232 CGCCCAATTCAGGAACCTTTTG 60.610 50.000 0.00 0.00 0.00 2.44
2425 2533 6.942576 TCTTTCTTTTATCAAGAGGGACCAAG 59.057 38.462 0.00 0.00 0.00 3.61
2675 2922 1.772567 AGGGTGTGTGCCTGGGTTA 60.773 57.895 0.00 0.00 0.00 2.85
2860 3133 4.681025 GTGTTGTTGACAATGAATGCGAAT 59.319 37.500 0.00 0.00 40.65 3.34
2942 3373 5.048364 GCATGTTTGTGTATGGGTGAGTAAA 60.048 40.000 0.00 0.00 0.00 2.01
3013 3448 2.723586 TTTGCACCGCACGATCTCCA 62.724 55.000 0.00 0.00 38.71 3.86
3257 3696 6.363357 CGTCGCAGAGAATGATGTCATTATTA 59.637 38.462 8.14 0.00 45.72 0.98
4385 5549 4.797743 TGCCCTGTTATGGTTATTGCATA 58.202 39.130 0.00 0.00 0.00 3.14
4390 5554 3.641046 TGCATGCCCTGTTATGGTTATT 58.359 40.909 16.68 0.00 0.00 1.40
5141 6380 1.610038 TGCTCAATGCCAAGTCAACTG 59.390 47.619 0.00 0.00 42.00 3.16
5142 6381 1.985473 TGCTCAATGCCAAGTCAACT 58.015 45.000 0.00 0.00 42.00 3.16
5143 6382 2.798976 TTGCTCAATGCCAAGTCAAC 57.201 45.000 0.00 0.00 42.00 3.18
5144 6383 3.815856 TTTTGCTCAATGCCAAGTCAA 57.184 38.095 0.00 0.00 42.00 3.18
5145 6384 4.039488 AGAATTTTGCTCAATGCCAAGTCA 59.961 37.500 0.00 0.00 42.00 3.41
5146 6385 4.563061 AGAATTTTGCTCAATGCCAAGTC 58.437 39.130 0.00 0.00 42.00 3.01
5147 6386 4.039488 TGAGAATTTTGCTCAATGCCAAGT 59.961 37.500 0.00 0.00 39.29 3.16
5148 6387 4.387862 GTGAGAATTTTGCTCAATGCCAAG 59.612 41.667 0.00 0.00 43.39 3.61
5149 6388 4.202233 TGTGAGAATTTTGCTCAATGCCAA 60.202 37.500 0.00 0.00 43.39 4.52
5150 6389 3.321396 TGTGAGAATTTTGCTCAATGCCA 59.679 39.130 0.00 0.00 43.39 4.92
5151 6390 3.916761 TGTGAGAATTTTGCTCAATGCC 58.083 40.909 0.00 0.00 43.39 4.40
5152 6391 5.163893 CCATTGTGAGAATTTTGCTCAATGC 60.164 40.000 16.78 0.00 43.39 3.56
5153 6392 5.163893 GCCATTGTGAGAATTTTGCTCAATG 60.164 40.000 16.00 16.00 43.39 2.82
5154 6393 4.933400 GCCATTGTGAGAATTTTGCTCAAT 59.067 37.500 0.00 0.00 43.39 2.57
5155 6394 4.039488 AGCCATTGTGAGAATTTTGCTCAA 59.961 37.500 0.00 0.00 43.39 3.02
5156 6395 3.575256 AGCCATTGTGAGAATTTTGCTCA 59.425 39.130 0.00 0.00 39.90 4.26
5157 6396 4.184079 AGCCATTGTGAGAATTTTGCTC 57.816 40.909 0.00 0.00 0.00 4.26
5158 6397 4.282703 AGAAGCCATTGTGAGAATTTTGCT 59.717 37.500 0.00 0.00 0.00 3.91
5159 6398 4.387862 CAGAAGCCATTGTGAGAATTTTGC 59.612 41.667 0.00 0.00 31.41 3.68
5160 6399 4.387862 GCAGAAGCCATTGTGAGAATTTTG 59.612 41.667 0.00 0.00 31.41 2.44
5161 6400 4.282703 AGCAGAAGCCATTGTGAGAATTTT 59.717 37.500 0.00 0.00 43.56 1.82
5162 6401 3.830755 AGCAGAAGCCATTGTGAGAATTT 59.169 39.130 0.00 0.00 43.56 1.82
5163 6402 3.192844 CAGCAGAAGCCATTGTGAGAATT 59.807 43.478 0.00 0.00 43.56 2.17
5164 6403 2.753452 CAGCAGAAGCCATTGTGAGAAT 59.247 45.455 0.00 0.00 43.56 2.40
5165 6404 2.156917 CAGCAGAAGCCATTGTGAGAA 58.843 47.619 0.00 0.00 43.56 2.87
5291 6530 1.070758 ACTTCCATGTGAGTTGCGTCT 59.929 47.619 0.00 0.00 0.00 4.18
5292 6531 1.512926 ACTTCCATGTGAGTTGCGTC 58.487 50.000 0.00 0.00 0.00 5.19
5293 6532 1.967319 AACTTCCATGTGAGTTGCGT 58.033 45.000 9.42 0.00 0.00 5.24
5294 6533 4.213270 TCTTTAACTTCCATGTGAGTTGCG 59.787 41.667 16.80 8.25 0.00 4.85
5295 6534 5.689383 TCTTTAACTTCCATGTGAGTTGC 57.311 39.130 16.80 0.00 0.00 4.17
5296 6535 7.439157 TGATCTTTAACTTCCATGTGAGTTG 57.561 36.000 16.80 5.17 0.00 3.16
5297 6536 7.040409 GGTTGATCTTTAACTTCCATGTGAGTT 60.040 37.037 13.44 13.44 0.00 3.01
5298 6537 6.431234 GGTTGATCTTTAACTTCCATGTGAGT 59.569 38.462 0.00 0.00 0.00 3.41
5299 6538 6.656693 AGGTTGATCTTTAACTTCCATGTGAG 59.343 38.462 0.00 0.00 0.00 3.51
5300 6539 6.542821 AGGTTGATCTTTAACTTCCATGTGA 58.457 36.000 0.00 0.00 0.00 3.58
5301 6540 6.824305 AGGTTGATCTTTAACTTCCATGTG 57.176 37.500 0.00 0.00 0.00 3.21
5302 6541 8.960591 CATTAGGTTGATCTTTAACTTCCATGT 58.039 33.333 0.00 0.00 0.00 3.21
5303 6542 7.917505 GCATTAGGTTGATCTTTAACTTCCATG 59.082 37.037 0.00 0.00 0.00 3.66
5304 6543 7.615365 TGCATTAGGTTGATCTTTAACTTCCAT 59.385 33.333 0.00 0.00 0.00 3.41
5305 6544 6.945435 TGCATTAGGTTGATCTTTAACTTCCA 59.055 34.615 0.00 0.00 0.00 3.53
5306 6545 7.391148 TGCATTAGGTTGATCTTTAACTTCC 57.609 36.000 0.00 0.00 0.00 3.46
5307 6546 8.462016 ACATGCATTAGGTTGATCTTTAACTTC 58.538 33.333 0.00 0.00 0.00 3.01
5308 6547 8.353423 ACATGCATTAGGTTGATCTTTAACTT 57.647 30.769 0.00 0.00 0.00 2.66
5309 6548 7.944729 ACATGCATTAGGTTGATCTTTAACT 57.055 32.000 0.00 0.00 0.00 2.24
5312 6551 9.679661 TCTTTACATGCATTAGGTTGATCTTTA 57.320 29.630 0.00 0.00 0.00 1.85
5313 6552 8.579850 TCTTTACATGCATTAGGTTGATCTTT 57.420 30.769 0.00 0.00 0.00 2.52
5314 6553 7.284034 CCTCTTTACATGCATTAGGTTGATCTT 59.716 37.037 0.00 0.00 0.00 2.40
5318 6557 6.061022 TCCTCTTTACATGCATTAGGTTGA 57.939 37.500 0.00 0.00 0.00 3.18
5384 6647 1.364626 GCACATGAGTTCTCTGCCCG 61.365 60.000 0.00 0.00 0.00 6.13
5436 6699 1.146263 GACAGCCTACCAATCCCGG 59.854 63.158 0.00 0.00 0.00 5.73
5568 6831 3.772387 TCAGGTCATCAGAGTCTGAACT 58.228 45.455 26.06 17.76 44.04 3.01
5595 6858 3.009033 TCTGAATTTCCAGAACGGGTGAT 59.991 43.478 0.00 0.00 39.96 3.06
5666 6929 8.898303 AATCATAGTCATCATCCTCAGAGTAT 57.102 34.615 0.00 0.00 0.00 2.12
5788 7066 1.475213 CCTCGGAAGGTAATCCAAGGC 60.475 57.143 0.00 0.00 39.61 4.35
5966 7244 4.467082 GCTGGATCATAGTCATCATCCTCT 59.533 45.833 0.00 0.00 36.51 3.69
6088 7366 2.674220 GGAACTCCCTCCTGGCCAG 61.674 68.421 26.87 26.87 32.21 4.85
6324 7605 7.653311 AGCTTTCATGAAGGACAAAAACATTAC 59.347 33.333 20.77 0.00 35.82 1.89
6382 7664 7.125792 TCTGAATAAAGTAATCACTCTCCCC 57.874 40.000 0.00 0.00 32.29 4.81
6861 8149 1.589414 AAGGCAGAGGGAGCACTAAT 58.411 50.000 0.00 0.00 0.00 1.73
6973 8261 1.406898 GCTTTCCCATAAGCCTGCTTC 59.593 52.381 7.81 0.00 43.69 3.86
7379 8674 3.056536 GCACGGCTAGGATATTGATCTGA 60.057 47.826 0.00 0.00 32.15 3.27
7755 9068 8.585881 GGGTAGTATATCTTTGACTGCTATTCA 58.414 37.037 0.00 0.00 0.00 2.57
7756 9069 8.035984 GGGGTAGTATATCTTTGACTGCTATTC 58.964 40.741 0.00 0.00 0.00 1.75
7850 9172 0.685097 TCGCTACCTTTTGGACTGCT 59.315 50.000 0.00 0.00 44.07 4.24
7855 9177 1.678728 CCTGCATCGCTACCTTTTGGA 60.679 52.381 0.00 0.00 44.07 3.53
7975 9298 5.429957 ACTTGCAAGTTCAAAGAGTCATC 57.570 39.130 26.36 0.00 35.21 2.92
8122 9449 2.625790 ACTTGCGATCTGGAGGAGTATC 59.374 50.000 0.00 0.00 0.00 2.24
8149 9476 2.352127 GGCACTTCCAAGATTGTTCAGC 60.352 50.000 0.00 0.00 34.01 4.26
8199 9526 7.095397 ACGATGAAACGTTCAATGTCTTCAATA 60.095 33.333 0.00 0.00 44.14 1.90
8243 9570 4.336433 GCATAATTTAAGGAGACAGCAGCA 59.664 41.667 0.00 0.00 0.00 4.41
8271 9598 4.701171 TGACAGCACATGAGCATAATTTCA 59.299 37.500 17.61 6.99 36.85 2.69
8272 9599 5.239359 TGACAGCACATGAGCATAATTTC 57.761 39.130 17.61 4.69 36.85 2.17
8341 9691 7.430211 CACTGACATTGTCGAAAATTCATATGG 59.570 37.037 11.97 0.00 34.95 2.74
8396 9748 6.692486 ACAACATATATTTCCCGCAAAAACA 58.308 32.000 0.00 0.00 0.00 2.83
8422 9775 7.504926 ACCAGAATATACTCCTTACCAACAA 57.495 36.000 0.00 0.00 0.00 2.83
8469 9822 2.319844 TGCAGACAAGAGACAAGAGGA 58.680 47.619 0.00 0.00 0.00 3.71
8546 9902 7.443259 TGATTCAACAGGCATATATCATGTG 57.557 36.000 0.00 0.00 0.00 3.21
8547 9903 7.362660 GCATGATTCAACAGGCATATATCATGT 60.363 37.037 18.08 5.35 44.68 3.21
8575 9931 7.759433 AGAAAAAGATGTTTTAACAGGTGTGTG 59.241 33.333 0.37 0.00 43.04 3.82
8577 9933 8.594687 CAAGAAAAAGATGTTTTAACAGGTGTG 58.405 33.333 0.37 0.00 43.04 3.82
8616 9972 1.755380 GGCGGTGTCCTACTGTATTCT 59.245 52.381 0.00 0.00 37.99 2.40
8746 10102 2.280592 ACAGCACCGGTCGTTTCC 60.281 61.111 2.59 0.00 0.00 3.13
8773 10129 0.391793 TGCGATGGCGTATTGGTTCA 60.392 50.000 0.00 0.00 44.10 3.18
8789 10145 0.467384 ATTCCCTGAGACCAGATGCG 59.533 55.000 0.00 0.00 43.02 4.73
8847 10203 1.313091 GGACAATCGGAAAGGGCCAC 61.313 60.000 6.18 0.00 0.00 5.01
8867 10223 1.728426 CGTCGTCACTCGGAACACC 60.728 63.158 0.00 0.00 40.32 4.16
8868 10224 2.362800 GCGTCGTCACTCGGAACAC 61.363 63.158 0.00 0.00 40.32 3.32



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.