Multiple sequence alignment - TraesCS1D01G340600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G340600 chr1D 100.000 3423 0 0 1 3423 430455328 430451906 0.000000e+00 6322.0
1 TraesCS1D01G340600 chr1D 97.772 718 16 0 2706 3423 430435768 430435051 0.000000e+00 1238.0
2 TraesCS1D01G340600 chr1D 94.965 715 36 0 2709 3423 114950749 114950035 0.000000e+00 1122.0
3 TraesCS1D01G340600 chr1D 94.011 718 43 0 2706 3423 109403959 109404676 0.000000e+00 1088.0
4 TraesCS1D01G340600 chr1B 93.546 1162 44 15 1447 2586 581307034 581305882 0.000000e+00 1701.0
5 TraesCS1D01G340600 chr1B 94.137 597 25 8 1 588 581319580 581318985 0.000000e+00 900.0
6 TraesCS1D01G340600 chr1B 89.916 357 28 2 647 1001 581313057 581312707 1.450000e-123 453.0
7 TraesCS1D01G340600 chr1B 87.869 305 15 8 994 1277 581307334 581307031 4.230000e-89 339.0
8 TraesCS1D01G340600 chr1B 94.340 53 3 0 583 635 581318741 581318689 7.870000e-12 82.4
9 TraesCS1D01G340600 chr1A 88.495 1043 70 33 1554 2585 527975083 527974080 0.000000e+00 1216.0
10 TraesCS1D01G340600 chr3D 94.568 718 39 0 2706 3423 367756598 367757315 0.000000e+00 1110.0
11 TraesCS1D01G340600 chr3D 94.019 719 42 1 2706 3423 606245008 606245726 0.000000e+00 1088.0
12 TraesCS1D01G340600 chr2D 94.803 712 37 0 2709 3420 23322929 23322218 0.000000e+00 1110.0
13 TraesCS1D01G340600 chr2D 94.429 718 40 0 2706 3423 479228130 479227413 0.000000e+00 1105.0
14 TraesCS1D01G340600 chr2D 80.328 122 17 4 1301 1415 596668172 596668051 6.090000e-13 86.1
15 TraesCS1D01G340600 chr7D 94.266 715 41 0 2709 3423 203575953 203575239 0.000000e+00 1094.0
16 TraesCS1D01G340600 chr7D 94.150 718 42 0 2706 3423 386802913 386803630 0.000000e+00 1094.0
17 TraesCS1D01G340600 chr5A 89.516 124 13 0 2587 2710 460462653 460462776 1.270000e-34 158.0
18 TraesCS1D01G340600 chr5B 86.614 127 16 1 2585 2710 472220793 472220667 4.610000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G340600 chr1D 430451906 430455328 3422 True 6322.0 6322 100.0000 1 3423 1 chr1D.!!$R3 3422
1 TraesCS1D01G340600 chr1D 430435051 430435768 717 True 1238.0 1238 97.7720 2706 3423 1 chr1D.!!$R2 717
2 TraesCS1D01G340600 chr1D 114950035 114950749 714 True 1122.0 1122 94.9650 2709 3423 1 chr1D.!!$R1 714
3 TraesCS1D01G340600 chr1D 109403959 109404676 717 False 1088.0 1088 94.0110 2706 3423 1 chr1D.!!$F1 717
4 TraesCS1D01G340600 chr1B 581305882 581307334 1452 True 1020.0 1701 90.7075 994 2586 2 chr1B.!!$R2 1592
5 TraesCS1D01G340600 chr1B 581318689 581319580 891 True 491.2 900 94.2385 1 635 2 chr1B.!!$R3 634
6 TraesCS1D01G340600 chr1A 527974080 527975083 1003 True 1216.0 1216 88.4950 1554 2585 1 chr1A.!!$R1 1031
7 TraesCS1D01G340600 chr3D 367756598 367757315 717 False 1110.0 1110 94.5680 2706 3423 1 chr3D.!!$F1 717
8 TraesCS1D01G340600 chr3D 606245008 606245726 718 False 1088.0 1088 94.0190 2706 3423 1 chr3D.!!$F2 717
9 TraesCS1D01G340600 chr2D 23322218 23322929 711 True 1110.0 1110 94.8030 2709 3420 1 chr2D.!!$R1 711
10 TraesCS1D01G340600 chr2D 479227413 479228130 717 True 1105.0 1105 94.4290 2706 3423 1 chr2D.!!$R2 717
11 TraesCS1D01G340600 chr7D 203575239 203575953 714 True 1094.0 1094 94.2660 2709 3423 1 chr7D.!!$R1 714
12 TraesCS1D01G340600 chr7D 386802913 386803630 717 False 1094.0 1094 94.1500 2706 3423 1 chr7D.!!$F1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 1074 0.028242 AGATCATGTCGTCTCGTCGC 59.972 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2700 3022 0.101399 CTCCGATGAACACGAGGAGG 59.899 60.0 11.47 0.0 43.42 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 0.958091 TGTTGGTCCATTTGGCTTCG 59.042 50.000 0.00 0.00 34.44 3.79
188 189 7.283354 AGGCTATGCTTTTTCCTATTAACTCAC 59.717 37.037 0.00 0.00 0.00 3.51
213 214 1.109609 TGTTGGTCAATGTTGCAGCA 58.890 45.000 5.46 5.46 0.00 4.41
216 217 2.222007 TGGTCAATGTTGCAGCAAAC 57.778 45.000 10.11 3.71 0.00 2.93
221 222 2.689471 TCAATGTTGCAGCAAACAGACT 59.311 40.909 10.11 0.00 42.99 3.24
260 268 2.162681 CAACAAGTTGGATCCAGGGAC 58.837 52.381 15.53 10.80 36.95 4.46
306 315 2.886523 TCAGCTGACACCAGGATTTTTG 59.113 45.455 13.74 0.00 40.72 2.44
386 395 4.844348 AGGACTGACCCCATAGGATTTAT 58.156 43.478 0.00 0.00 39.89 1.40
391 400 7.014326 GGACTGACCCCATAGGATTTATTTTTC 59.986 40.741 0.00 0.00 39.89 2.29
417 426 1.194121 GCCCCTGGTTGGAGCAAAAT 61.194 55.000 0.00 0.00 38.35 1.82
530 540 5.751586 AGAGTTACTCTTCTACTCCCTCTG 58.248 45.833 9.37 0.00 37.60 3.35
540 550 5.516059 TCTACTCCCTCTGTAGACTTTCA 57.484 43.478 0.00 0.00 40.72 2.69
568 578 5.287226 ACGTTTGAGGTCACTACTTTACAG 58.713 41.667 0.00 0.00 0.00 2.74
570 580 5.629849 CGTTTGAGGTCACTACTTTACAGAG 59.370 44.000 0.00 0.00 0.00 3.35
578 588 5.068855 GTCACTACTTTACAGAGGGGGTATC 59.931 48.000 0.00 0.00 0.00 2.24
614 873 2.537560 GCAGCCCATCACGAATCCG 61.538 63.158 0.00 0.00 42.50 4.18
632 891 2.122729 TGCTAGGGGACAGGCTGT 59.877 61.111 22.26 22.26 0.00 4.40
635 894 3.009115 TAGGGGACAGGCTGTGGC 61.009 66.667 27.45 11.62 37.82 5.01
640 899 4.314440 GACAGGCTGTGGCGTCCA 62.314 66.667 27.45 0.00 39.81 4.02
669 928 1.747924 GGCTGGAGCTGAAGATTTTCC 59.252 52.381 0.00 0.00 41.70 3.13
670 929 2.620108 GGCTGGAGCTGAAGATTTTCCT 60.620 50.000 0.00 0.00 41.70 3.36
671 930 3.087781 GCTGGAGCTGAAGATTTTCCTT 58.912 45.455 0.00 0.00 38.21 3.36
672 931 3.509184 GCTGGAGCTGAAGATTTTCCTTT 59.491 43.478 0.00 0.00 38.21 3.11
673 932 4.617762 GCTGGAGCTGAAGATTTTCCTTTG 60.618 45.833 0.00 0.00 38.21 2.77
674 933 3.256631 TGGAGCTGAAGATTTTCCTTTGC 59.743 43.478 0.00 0.00 32.09 3.68
675 934 3.367806 GGAGCTGAAGATTTTCCTTTGCC 60.368 47.826 0.00 0.00 32.09 4.52
676 935 2.229784 AGCTGAAGATTTTCCTTTGCCG 59.770 45.455 0.00 0.00 32.09 5.69
677 936 2.599659 CTGAAGATTTTCCTTTGCCGC 58.400 47.619 0.00 0.00 32.09 6.53
678 937 2.229784 CTGAAGATTTTCCTTTGCCGCT 59.770 45.455 0.00 0.00 32.09 5.52
679 938 2.228822 TGAAGATTTTCCTTTGCCGCTC 59.771 45.455 0.00 0.00 32.09 5.03
680 939 1.177401 AGATTTTCCTTTGCCGCTCC 58.823 50.000 0.00 0.00 0.00 4.70
681 940 0.173481 GATTTTCCTTTGCCGCTCCC 59.827 55.000 0.00 0.00 0.00 4.30
682 941 1.595093 ATTTTCCTTTGCCGCTCCCG 61.595 55.000 0.00 0.00 0.00 5.14
685 944 4.467084 CCTTTGCCGCTCCCGCTA 62.467 66.667 0.00 0.00 0.00 4.26
686 945 2.435938 CTTTGCCGCTCCCGCTAA 60.436 61.111 0.00 0.00 0.00 3.09
687 946 2.744709 TTTGCCGCTCCCGCTAAC 60.745 61.111 0.00 0.00 0.00 2.34
699 958 3.857038 GCTAACGGCCGGGATGGA 61.857 66.667 31.76 6.41 42.00 3.41
700 959 2.421739 CTAACGGCCGGGATGGAG 59.578 66.667 31.76 12.61 42.00 3.86
701 960 3.809374 CTAACGGCCGGGATGGAGC 62.809 68.421 31.76 0.00 42.00 4.70
712 971 2.591753 ATGGAGCCCATCACGGTG 59.408 61.111 0.56 0.56 40.74 4.94
713 972 1.995066 ATGGAGCCCATCACGGTGA 60.995 57.895 14.01 14.01 40.74 4.02
714 973 2.125106 GGAGCCCATCACGGTGAC 60.125 66.667 13.92 0.32 0.00 3.67
715 974 2.125106 GAGCCCATCACGGTGACC 60.125 66.667 13.92 2.62 0.00 4.02
725 984 4.372235 CGGTGACCGTACGTGATC 57.628 61.111 17.28 9.29 42.73 2.92
726 985 1.581912 CGGTGACCGTACGTGATCG 60.582 63.158 17.28 5.63 42.73 3.69
727 986 2.244436 CGGTGACCGTACGTGATCGT 62.244 60.000 17.28 4.00 44.99 3.73
749 1008 3.921081 CGTTTCACGGATCAACGTC 57.079 52.632 7.01 0.00 46.75 4.34
750 1009 0.090676 CGTTTCACGGATCAACGTCG 59.909 55.000 7.01 0.00 46.75 5.12
751 1010 0.179258 GTTTCACGGATCAACGTCGC 60.179 55.000 0.00 0.00 46.75 5.19
752 1011 0.319211 TTTCACGGATCAACGTCGCT 60.319 50.000 0.00 0.00 46.75 4.93
753 1012 0.731514 TTCACGGATCAACGTCGCTC 60.732 55.000 0.00 0.00 46.75 5.03
754 1013 2.158959 CACGGATCAACGTCGCTCC 61.159 63.158 0.00 0.00 46.75 4.70
755 1014 2.180769 CGGATCAACGTCGCTCCA 59.819 61.111 0.00 0.00 0.00 3.86
756 1015 1.226974 CGGATCAACGTCGCTCCAT 60.227 57.895 0.00 0.00 0.00 3.41
757 1016 1.209275 CGGATCAACGTCGCTCCATC 61.209 60.000 0.00 0.00 0.00 3.51
758 1017 0.876342 GGATCAACGTCGCTCCATCC 60.876 60.000 0.00 0.00 0.00 3.51
759 1018 0.103208 GATCAACGTCGCTCCATCCT 59.897 55.000 0.00 0.00 0.00 3.24
760 1019 1.337071 GATCAACGTCGCTCCATCCTA 59.663 52.381 0.00 0.00 0.00 2.94
761 1020 0.454600 TCAACGTCGCTCCATCCTAC 59.545 55.000 0.00 0.00 0.00 3.18
762 1021 0.456221 CAACGTCGCTCCATCCTACT 59.544 55.000 0.00 0.00 0.00 2.57
763 1022 0.739561 AACGTCGCTCCATCCTACTC 59.260 55.000 0.00 0.00 0.00 2.59
764 1023 1.102222 ACGTCGCTCCATCCTACTCC 61.102 60.000 0.00 0.00 0.00 3.85
765 1024 0.820074 CGTCGCTCCATCCTACTCCT 60.820 60.000 0.00 0.00 0.00 3.69
766 1025 1.404843 GTCGCTCCATCCTACTCCTT 58.595 55.000 0.00 0.00 0.00 3.36
767 1026 1.067821 GTCGCTCCATCCTACTCCTTG 59.932 57.143 0.00 0.00 0.00 3.61
768 1027 0.390860 CGCTCCATCCTACTCCTTGG 59.609 60.000 0.00 0.00 0.00 3.61
769 1028 0.107643 GCTCCATCCTACTCCTTGGC 59.892 60.000 0.00 0.00 0.00 4.52
770 1029 0.761802 CTCCATCCTACTCCTTGGCC 59.238 60.000 0.00 0.00 0.00 5.36
771 1030 1.048724 TCCATCCTACTCCTTGGCCG 61.049 60.000 0.00 0.00 0.00 6.13
772 1031 1.227674 CATCCTACTCCTTGGCCGC 60.228 63.158 0.00 0.00 0.00 6.53
773 1032 1.383248 ATCCTACTCCTTGGCCGCT 60.383 57.895 0.00 0.00 0.00 5.52
774 1033 0.105658 ATCCTACTCCTTGGCCGCTA 60.106 55.000 0.00 0.00 0.00 4.26
775 1034 0.755698 TCCTACTCCTTGGCCGCTAG 60.756 60.000 0.00 0.00 0.00 3.42
776 1035 1.068250 CTACTCCTTGGCCGCTAGC 59.932 63.158 4.06 4.06 42.60 3.42
777 1036 2.685387 CTACTCCTTGGCCGCTAGCG 62.685 65.000 29.93 29.93 45.17 4.26
778 1037 3.838271 CTCCTTGGCCGCTAGCGA 61.838 66.667 37.39 16.19 45.17 4.93
779 1038 4.143333 TCCTTGGCCGCTAGCGAC 62.143 66.667 37.39 27.26 45.17 5.19
792 1051 3.527641 GCGACCCAGCTAGCTACT 58.472 61.111 18.86 1.89 0.00 2.57
793 1052 2.716814 GCGACCCAGCTAGCTACTA 58.283 57.895 18.86 0.00 0.00 1.82
794 1053 0.311477 GCGACCCAGCTAGCTACTAC 59.689 60.000 18.86 8.82 0.00 2.73
795 1054 1.970092 CGACCCAGCTAGCTACTACT 58.030 55.000 18.86 0.00 0.00 2.57
796 1055 2.809665 GCGACCCAGCTAGCTACTACTA 60.810 54.545 18.86 0.00 0.00 1.82
797 1056 3.068560 CGACCCAGCTAGCTACTACTAG 58.931 54.545 18.86 2.66 42.20 2.57
798 1057 3.244146 CGACCCAGCTAGCTACTACTAGA 60.244 52.174 18.86 0.00 41.92 2.43
799 1058 4.563993 CGACCCAGCTAGCTACTACTAGAT 60.564 50.000 18.86 0.00 41.92 1.98
800 1059 4.913784 ACCCAGCTAGCTACTACTAGATC 58.086 47.826 18.86 0.00 41.92 2.75
801 1060 4.351407 ACCCAGCTAGCTACTACTAGATCA 59.649 45.833 18.86 0.00 41.92 2.92
802 1061 5.014755 ACCCAGCTAGCTACTACTAGATCAT 59.985 44.000 18.86 0.00 41.92 2.45
803 1062 5.356751 CCCAGCTAGCTACTACTAGATCATG 59.643 48.000 18.86 0.01 41.92 3.07
804 1063 5.943416 CCAGCTAGCTACTACTAGATCATGT 59.057 44.000 18.86 0.00 41.92 3.21
805 1064 6.093495 CCAGCTAGCTACTACTAGATCATGTC 59.907 46.154 18.86 0.00 41.92 3.06
806 1065 5.872617 AGCTAGCTACTACTAGATCATGTCG 59.127 44.000 17.69 0.00 41.92 4.35
807 1066 5.640357 GCTAGCTACTACTAGATCATGTCGT 59.360 44.000 7.70 0.00 41.92 4.34
808 1067 6.183360 GCTAGCTACTACTAGATCATGTCGTC 60.183 46.154 7.70 0.00 41.92 4.20
809 1068 5.860611 AGCTACTACTAGATCATGTCGTCT 58.139 41.667 0.00 0.00 0.00 4.18
810 1069 5.929992 AGCTACTACTAGATCATGTCGTCTC 59.070 44.000 0.00 0.00 0.00 3.36
811 1070 5.164031 GCTACTACTAGATCATGTCGTCTCG 60.164 48.000 0.00 0.00 0.00 4.04
812 1071 4.695396 ACTACTAGATCATGTCGTCTCGT 58.305 43.478 0.00 0.96 0.00 4.18
813 1072 4.746115 ACTACTAGATCATGTCGTCTCGTC 59.254 45.833 0.00 0.00 0.00 4.20
814 1073 2.540516 ACTAGATCATGTCGTCTCGTCG 59.459 50.000 0.00 0.00 0.00 5.12
815 1074 0.028242 AGATCATGTCGTCTCGTCGC 59.972 55.000 0.00 0.00 0.00 5.19
816 1075 0.248094 GATCATGTCGTCTCGTCGCA 60.248 55.000 0.00 0.00 0.00 5.10
817 1076 0.523546 ATCATGTCGTCTCGTCGCAC 60.524 55.000 0.00 0.00 0.00 5.34
818 1077 2.152699 CATGTCGTCTCGTCGCACC 61.153 63.158 0.00 0.00 0.00 5.01
819 1078 2.333417 ATGTCGTCTCGTCGCACCT 61.333 57.895 0.00 0.00 0.00 4.00
820 1079 2.202324 GTCGTCTCGTCGCACCTC 60.202 66.667 0.00 0.00 0.00 3.85
821 1080 3.429141 TCGTCTCGTCGCACCTCC 61.429 66.667 0.00 0.00 0.00 4.30
822 1081 3.733960 CGTCTCGTCGCACCTCCA 61.734 66.667 0.00 0.00 0.00 3.86
823 1082 2.126424 GTCTCGTCGCACCTCCAC 60.126 66.667 0.00 0.00 0.00 4.02
824 1083 2.282251 TCTCGTCGCACCTCCACT 60.282 61.111 0.00 0.00 0.00 4.00
825 1084 2.126307 CTCGTCGCACCTCCACTG 60.126 66.667 0.00 0.00 0.00 3.66
826 1085 3.633094 CTCGTCGCACCTCCACTGG 62.633 68.421 0.00 0.00 0.00 4.00
827 1086 3.680786 CGTCGCACCTCCACTGGA 61.681 66.667 0.00 0.00 0.00 3.86
828 1087 2.048127 GTCGCACCTCCACTGGAC 60.048 66.667 0.00 0.00 0.00 4.02
829 1088 2.523168 TCGCACCTCCACTGGACA 60.523 61.111 0.00 0.00 0.00 4.02
830 1089 2.047844 CGCACCTCCACTGGACAG 60.048 66.667 0.00 0.00 0.00 3.51
831 1090 2.348998 GCACCTCCACTGGACAGG 59.651 66.667 4.14 0.00 0.00 4.00
832 1091 3.072476 CACCTCCACTGGACAGGG 58.928 66.667 8.00 4.66 0.00 4.45
833 1092 2.930562 ACCTCCACTGGACAGGGC 60.931 66.667 8.00 0.00 0.00 5.19
834 1093 2.930019 CCTCCACTGGACAGGGCA 60.930 66.667 4.14 0.00 0.00 5.36
835 1094 2.667418 CTCCACTGGACAGGGCAG 59.333 66.667 4.14 0.00 0.00 4.85
836 1095 2.930019 TCCACTGGACAGGGCAGG 60.930 66.667 4.14 0.87 0.00 4.85
837 1096 4.729918 CCACTGGACAGGGCAGGC 62.730 72.222 4.14 0.00 0.00 4.85
840 1099 4.020617 CTGGACAGGGCAGGCGAA 62.021 66.667 0.00 0.00 0.00 4.70
841 1100 3.551496 CTGGACAGGGCAGGCGAAA 62.551 63.158 0.00 0.00 0.00 3.46
842 1101 3.056328 GGACAGGGCAGGCGAAAC 61.056 66.667 0.00 0.00 0.00 2.78
843 1102 2.032681 GACAGGGCAGGCGAAACT 59.967 61.111 0.00 0.00 0.00 2.66
844 1103 1.600916 GACAGGGCAGGCGAAACTT 60.601 57.895 0.00 0.00 0.00 2.66
845 1104 1.152756 ACAGGGCAGGCGAAACTTT 60.153 52.632 0.00 0.00 0.00 2.66
846 1105 1.286880 CAGGGCAGGCGAAACTTTG 59.713 57.895 0.00 0.00 0.00 2.77
847 1106 2.049156 GGGCAGGCGAAACTTTGC 60.049 61.111 0.00 0.00 36.84 3.68
848 1107 2.429069 GGCAGGCGAAACTTTGCG 60.429 61.111 0.00 0.00 38.49 4.85
849 1108 2.637025 GCAGGCGAAACTTTGCGA 59.363 55.556 0.00 0.00 38.49 5.10
850 1109 1.725973 GCAGGCGAAACTTTGCGAC 60.726 57.895 0.00 0.00 38.49 5.19
851 1110 4.456806 AGGCGAAACTTTGCGACT 57.543 50.000 0.00 0.00 41.88 4.18
852 1111 0.307760 CAGGCGAAACTTTGCGACTT 59.692 50.000 0.00 0.00 44.87 3.01
853 1112 0.307760 AGGCGAAACTTTGCGACTTG 59.692 50.000 0.00 0.00 44.87 3.16
854 1113 0.028902 GGCGAAACTTTGCGACTTGT 59.971 50.000 0.00 0.00 38.49 3.16
855 1114 1.112459 GCGAAACTTTGCGACTTGTG 58.888 50.000 0.00 0.00 0.00 3.33
856 1115 1.531058 GCGAAACTTTGCGACTTGTGT 60.531 47.619 0.00 0.00 0.00 3.72
857 1116 2.101125 CGAAACTTTGCGACTTGTGTG 58.899 47.619 0.00 0.00 0.00 3.82
858 1117 1.846175 GAAACTTTGCGACTTGTGTGC 59.154 47.619 0.00 0.00 0.00 4.57
859 1118 1.094785 AACTTTGCGACTTGTGTGCT 58.905 45.000 0.00 0.00 0.00 4.40
860 1119 1.094785 ACTTTGCGACTTGTGTGCTT 58.905 45.000 0.00 0.00 0.00 3.91
861 1120 1.064060 ACTTTGCGACTTGTGTGCTTC 59.936 47.619 0.00 0.00 0.00 3.86
862 1121 0.380378 TTTGCGACTTGTGTGCTTCC 59.620 50.000 0.00 0.00 0.00 3.46
863 1122 1.444119 TTGCGACTTGTGTGCTTCCC 61.444 55.000 0.00 0.00 0.00 3.97
864 1123 1.598130 GCGACTTGTGTGCTTCCCT 60.598 57.895 0.00 0.00 0.00 4.20
865 1124 1.166531 GCGACTTGTGTGCTTCCCTT 61.167 55.000 0.00 0.00 0.00 3.95
866 1125 0.868406 CGACTTGTGTGCTTCCCTTC 59.132 55.000 0.00 0.00 0.00 3.46
867 1126 1.239347 GACTTGTGTGCTTCCCTTCC 58.761 55.000 0.00 0.00 0.00 3.46
868 1127 0.846693 ACTTGTGTGCTTCCCTTCCT 59.153 50.000 0.00 0.00 0.00 3.36
869 1128 1.242076 CTTGTGTGCTTCCCTTCCTG 58.758 55.000 0.00 0.00 0.00 3.86
870 1129 0.843309 TTGTGTGCTTCCCTTCCTGA 59.157 50.000 0.00 0.00 0.00 3.86
871 1130 0.108585 TGTGTGCTTCCCTTCCTGAC 59.891 55.000 0.00 0.00 0.00 3.51
872 1131 0.951040 GTGTGCTTCCCTTCCTGACG 60.951 60.000 0.00 0.00 0.00 4.35
873 1132 1.371558 GTGCTTCCCTTCCTGACGT 59.628 57.895 0.00 0.00 0.00 4.34
874 1133 0.670854 GTGCTTCCCTTCCTGACGTC 60.671 60.000 9.11 9.11 0.00 4.34
875 1134 1.118965 TGCTTCCCTTCCTGACGTCA 61.119 55.000 18.88 18.88 0.00 4.35
876 1135 0.250513 GCTTCCCTTCCTGACGTCAT 59.749 55.000 20.40 0.00 0.00 3.06
877 1136 1.480954 GCTTCCCTTCCTGACGTCATA 59.519 52.381 20.40 7.73 0.00 2.15
878 1137 2.103263 GCTTCCCTTCCTGACGTCATAT 59.897 50.000 20.40 0.00 0.00 1.78
879 1138 3.432326 GCTTCCCTTCCTGACGTCATATT 60.432 47.826 20.40 0.00 0.00 1.28
880 1139 3.819564 TCCCTTCCTGACGTCATATTG 57.180 47.619 20.40 7.16 0.00 1.90
881 1140 2.158957 TCCCTTCCTGACGTCATATTGC 60.159 50.000 20.40 0.00 0.00 3.56
882 1141 2.213499 CCTTCCTGACGTCATATTGCC 58.787 52.381 20.40 0.00 0.00 4.52
883 1142 1.860950 CTTCCTGACGTCATATTGCCG 59.139 52.381 20.40 5.16 0.00 5.69
884 1143 0.104120 TCCTGACGTCATATTGCCGG 59.896 55.000 20.40 14.75 0.00 6.13
885 1144 1.498865 CCTGACGTCATATTGCCGGC 61.499 60.000 22.73 22.73 0.00 6.13
886 1145 1.498865 CTGACGTCATATTGCCGGCC 61.499 60.000 26.77 6.44 0.00 6.13
887 1146 2.587753 ACGTCATATTGCCGGCCG 60.588 61.111 26.77 21.04 0.00 6.13
888 1147 3.345808 CGTCATATTGCCGGCCGG 61.346 66.667 40.26 40.26 38.57 6.13
898 1157 3.770040 CCGGCCGGACAGACATGA 61.770 66.667 41.82 0.00 37.50 3.07
899 1158 2.202797 CGGCCGGACAGACATGAG 60.203 66.667 20.10 0.00 0.00 2.90
900 1159 2.512515 GGCCGGACAGACATGAGC 60.513 66.667 5.05 0.00 0.00 4.26
901 1160 2.265739 GCCGGACAGACATGAGCA 59.734 61.111 5.05 0.00 0.00 4.26
902 1161 1.812922 GCCGGACAGACATGAGCAG 60.813 63.158 5.05 0.00 0.00 4.24
903 1162 1.812922 CCGGACAGACATGAGCAGC 60.813 63.158 0.00 0.00 0.00 5.25
904 1163 1.079612 CGGACAGACATGAGCAGCA 60.080 57.895 0.00 0.00 0.00 4.41
905 1164 0.671472 CGGACAGACATGAGCAGCAA 60.671 55.000 0.00 0.00 0.00 3.91
906 1165 0.801251 GGACAGACATGAGCAGCAAC 59.199 55.000 0.00 0.00 0.00 4.17
907 1166 0.441533 GACAGACATGAGCAGCAACG 59.558 55.000 0.00 0.00 0.00 4.10
908 1167 0.952497 ACAGACATGAGCAGCAACGG 60.952 55.000 0.00 0.00 0.00 4.44
909 1168 2.037136 AGACATGAGCAGCAACGGC 61.037 57.895 0.00 0.00 41.61 5.68
934 1193 4.467084 GGGCCGCAACGATGGAGA 62.467 66.667 0.00 0.00 0.00 3.71
935 1194 2.892425 GGCCGCAACGATGGAGAG 60.892 66.667 0.00 0.00 0.00 3.20
936 1195 2.892425 GCCGCAACGATGGAGAGG 60.892 66.667 0.00 0.00 0.00 3.69
937 1196 2.892425 CCGCAACGATGGAGAGGC 60.892 66.667 0.00 0.00 0.00 4.70
938 1197 2.892425 CGCAACGATGGAGAGGCC 60.892 66.667 0.00 0.00 37.10 5.19
946 1205 2.444706 TGGAGAGGCCATCGGAGG 60.445 66.667 5.01 0.00 43.33 4.30
947 1206 2.123251 GGAGAGGCCATCGGAGGA 60.123 66.667 5.01 0.00 36.34 3.71
948 1207 2.206536 GGAGAGGCCATCGGAGGAG 61.207 68.421 5.01 0.00 36.34 3.69
949 1208 2.841988 AGAGGCCATCGGAGGAGC 60.842 66.667 5.01 0.00 0.00 4.70
950 1209 3.934962 GAGGCCATCGGAGGAGCC 61.935 72.222 5.01 12.32 46.13 4.70
952 1211 4.247380 GGCCATCGGAGGAGCCAG 62.247 72.222 14.47 0.00 45.07 4.85
953 1212 3.474570 GCCATCGGAGGAGCCAGT 61.475 66.667 0.00 0.00 35.94 4.00
954 1213 2.503061 CCATCGGAGGAGCCAGTG 59.497 66.667 0.00 0.00 35.94 3.66
955 1214 2.503061 CATCGGAGGAGCCAGTGG 59.497 66.667 4.20 4.20 35.94 4.00
956 1215 2.039624 ATCGGAGGAGCCAGTGGT 59.960 61.111 11.74 0.00 35.94 4.16
957 1216 2.362369 ATCGGAGGAGCCAGTGGTG 61.362 63.158 11.74 0.00 35.94 4.17
958 1217 3.314331 CGGAGGAGCCAGTGGTGT 61.314 66.667 11.74 0.00 35.94 4.16
959 1218 2.665603 GGAGGAGCCAGTGGTGTC 59.334 66.667 11.74 8.05 36.34 3.67
960 1219 2.262915 GAGGAGCCAGTGGTGTCG 59.737 66.667 11.74 0.00 0.00 4.35
961 1220 3.302347 GAGGAGCCAGTGGTGTCGG 62.302 68.421 11.74 0.00 0.00 4.79
971 1230 4.778143 GGTGTCGGCGGCCAGATT 62.778 66.667 20.71 0.00 0.00 2.40
972 1231 3.195698 GTGTCGGCGGCCAGATTC 61.196 66.667 20.71 10.20 0.00 2.52
973 1232 3.700970 TGTCGGCGGCCAGATTCA 61.701 61.111 20.71 9.47 0.00 2.57
974 1233 2.892425 GTCGGCGGCCAGATTCAG 60.892 66.667 20.71 0.11 0.00 3.02
975 1234 4.838152 TCGGCGGCCAGATTCAGC 62.838 66.667 20.71 0.00 0.00 4.26
977 1236 4.838152 GGCGGCCAGATTCAGCGA 62.838 66.667 15.62 0.00 0.00 4.93
978 1237 3.267860 GCGGCCAGATTCAGCGAG 61.268 66.667 2.24 0.00 0.00 5.03
979 1238 2.587194 CGGCCAGATTCAGCGAGG 60.587 66.667 2.24 0.00 0.00 4.63
980 1239 2.903357 GGCCAGATTCAGCGAGGA 59.097 61.111 0.00 0.00 0.00 3.71
981 1240 1.227497 GGCCAGATTCAGCGAGGAG 60.227 63.158 0.00 0.00 0.00 3.69
1001 1260 2.125512 GGCTGCAACGACGGAGAT 60.126 61.111 0.50 0.00 0.00 2.75
1030 1289 4.749310 AGGCGAGCACCTTCAGCG 62.749 66.667 0.00 0.00 36.28 5.18
1168 1435 3.205338 CGTTTGATGCATCCATCCACTA 58.795 45.455 23.67 0.00 45.86 2.74
1175 1442 5.243954 TGATGCATCCATCCACTACTAGTAC 59.756 44.000 23.67 0.00 45.86 2.73
1201 1476 0.320771 TTTCAGTGCCCGAAGAGAGC 60.321 55.000 0.00 0.00 0.00 4.09
1202 1477 1.471829 TTCAGTGCCCGAAGAGAGCA 61.472 55.000 0.00 0.00 0.00 4.26
1213 1488 0.616111 AAGAGAGCACATCCGTCCCT 60.616 55.000 0.00 0.00 0.00 4.20
1220 1495 2.105128 CATCCGTCCCTCGAGCAC 59.895 66.667 6.99 4.75 42.86 4.40
1243 1518 3.496884 GTGCGGTTACATTTCTCACTGAA 59.503 43.478 0.00 0.00 0.00 3.02
1244 1519 3.496884 TGCGGTTACATTTCTCACTGAAC 59.503 43.478 0.00 0.00 33.88 3.18
1247 1522 5.407387 GCGGTTACATTTCTCACTGAACTTA 59.593 40.000 0.00 0.00 33.88 2.24
1248 1523 6.073440 GCGGTTACATTTCTCACTGAACTTAA 60.073 38.462 0.00 0.00 33.88 1.85
1249 1524 7.519328 GCGGTTACATTTCTCACTGAACTTAAA 60.519 37.037 0.00 0.00 33.88 1.52
1250 1525 8.339714 CGGTTACATTTCTCACTGAACTTAAAA 58.660 33.333 0.00 0.00 33.88 1.52
1274 1549 8.458573 AAAAAGGGTATATATCGTTTCATGCA 57.541 30.769 12.75 0.00 0.00 3.96
1275 1550 8.635765 AAAAGGGTATATATCGTTTCATGCAT 57.364 30.769 12.75 0.00 0.00 3.96
1276 1551 7.615582 AAGGGTATATATCGTTTCATGCATG 57.384 36.000 21.07 21.07 0.00 4.06
1280 1555 7.279981 GGGTATATATCGTTTCATGCATGCTTA 59.720 37.037 22.25 6.84 0.00 3.09
1313 1588 9.978044 AGTTTTTCTAAGTACTTCGTTATGTCT 57.022 29.630 12.39 1.13 0.00 3.41
1315 1590 9.970395 TTTTTCTAAGTACTTCGTTATGTCTCA 57.030 29.630 12.39 0.00 0.00 3.27
1316 1591 9.622004 TTTTCTAAGTACTTCGTTATGTCTCAG 57.378 33.333 12.39 0.00 0.00 3.35
1317 1592 7.918536 TCTAAGTACTTCGTTATGTCTCAGT 57.081 36.000 12.39 0.00 0.00 3.41
1318 1593 7.749808 TCTAAGTACTTCGTTATGTCTCAGTG 58.250 38.462 12.39 0.00 0.00 3.66
1319 1594 5.312120 AGTACTTCGTTATGTCTCAGTGG 57.688 43.478 0.00 0.00 0.00 4.00
1320 1595 5.008331 AGTACTTCGTTATGTCTCAGTGGA 58.992 41.667 0.00 0.00 0.00 4.02
1321 1596 5.652891 AGTACTTCGTTATGTCTCAGTGGAT 59.347 40.000 0.00 0.00 0.00 3.41
1322 1597 4.748892 ACTTCGTTATGTCTCAGTGGATG 58.251 43.478 0.00 0.00 0.00 3.51
1323 1598 3.165058 TCGTTATGTCTCAGTGGATGC 57.835 47.619 0.00 0.00 0.00 3.91
1324 1599 2.760650 TCGTTATGTCTCAGTGGATGCT 59.239 45.455 0.00 0.00 0.00 3.79
1325 1600 3.951680 TCGTTATGTCTCAGTGGATGCTA 59.048 43.478 0.00 0.00 0.00 3.49
1326 1601 4.584743 TCGTTATGTCTCAGTGGATGCTAT 59.415 41.667 0.00 0.00 0.00 2.97
1327 1602 5.768164 TCGTTATGTCTCAGTGGATGCTATA 59.232 40.000 0.00 0.00 0.00 1.31
1328 1603 6.434340 TCGTTATGTCTCAGTGGATGCTATAT 59.566 38.462 0.00 0.00 0.00 0.86
1329 1604 7.039714 TCGTTATGTCTCAGTGGATGCTATATT 60.040 37.037 0.00 0.00 0.00 1.28
1330 1605 7.274468 CGTTATGTCTCAGTGGATGCTATATTC 59.726 40.741 0.00 0.00 0.00 1.75
1331 1606 6.931790 ATGTCTCAGTGGATGCTATATTCT 57.068 37.500 0.00 0.00 0.00 2.40
1332 1607 6.737720 TGTCTCAGTGGATGCTATATTCTT 57.262 37.500 0.00 0.00 0.00 2.52
1333 1608 7.129457 TGTCTCAGTGGATGCTATATTCTTT 57.871 36.000 0.00 0.00 0.00 2.52
1334 1609 7.568349 TGTCTCAGTGGATGCTATATTCTTTT 58.432 34.615 0.00 0.00 0.00 2.27
1335 1610 7.496920 TGTCTCAGTGGATGCTATATTCTTTTG 59.503 37.037 0.00 0.00 0.00 2.44
1336 1611 7.712639 GTCTCAGTGGATGCTATATTCTTTTGA 59.287 37.037 0.00 0.00 0.00 2.69
1337 1612 8.435187 TCTCAGTGGATGCTATATTCTTTTGAT 58.565 33.333 0.00 0.00 0.00 2.57
1338 1613 8.985315 TCAGTGGATGCTATATTCTTTTGATT 57.015 30.769 0.00 0.00 0.00 2.57
1339 1614 9.412460 TCAGTGGATGCTATATTCTTTTGATTT 57.588 29.630 0.00 0.00 0.00 2.17
1340 1615 9.459640 CAGTGGATGCTATATTCTTTTGATTTG 57.540 33.333 0.00 0.00 0.00 2.32
1341 1616 8.139989 AGTGGATGCTATATTCTTTTGATTTGC 58.860 33.333 0.00 0.00 0.00 3.68
1342 1617 7.922278 GTGGATGCTATATTCTTTTGATTTGCA 59.078 33.333 0.00 0.00 0.00 4.08
1343 1618 8.644216 TGGATGCTATATTCTTTTGATTTGCAT 58.356 29.630 0.00 0.00 39.63 3.96
1344 1619 8.922676 GGATGCTATATTCTTTTGATTTGCATG 58.077 33.333 0.00 0.00 37.51 4.06
1345 1620 8.827177 ATGCTATATTCTTTTGATTTGCATGG 57.173 30.769 0.00 0.00 36.30 3.66
1346 1621 8.009622 TGCTATATTCTTTTGATTTGCATGGA 57.990 30.769 0.00 0.00 0.00 3.41
1347 1622 8.139350 TGCTATATTCTTTTGATTTGCATGGAG 58.861 33.333 0.00 0.00 0.00 3.86
1348 1623 8.355169 GCTATATTCTTTTGATTTGCATGGAGA 58.645 33.333 0.00 0.00 0.00 3.71
1351 1626 9.760077 ATATTCTTTTGATTTGCATGGAGATTC 57.240 29.630 0.00 0.00 0.00 2.52
1352 1627 5.643664 TCTTTTGATTTGCATGGAGATTCG 58.356 37.500 0.00 0.00 0.00 3.34
1353 1628 5.183713 TCTTTTGATTTGCATGGAGATTCGT 59.816 36.000 0.00 0.00 0.00 3.85
1354 1629 6.374053 TCTTTTGATTTGCATGGAGATTCGTA 59.626 34.615 0.00 0.00 0.00 3.43
1355 1630 5.484173 TTGATTTGCATGGAGATTCGTAC 57.516 39.130 0.00 0.00 0.00 3.67
1356 1631 4.512484 TGATTTGCATGGAGATTCGTACA 58.488 39.130 0.00 0.00 0.00 2.90
1357 1632 4.940654 TGATTTGCATGGAGATTCGTACAA 59.059 37.500 0.00 0.00 0.00 2.41
1358 1633 5.414144 TGATTTGCATGGAGATTCGTACAAA 59.586 36.000 0.00 0.00 0.00 2.83
1359 1634 5.697473 TTTGCATGGAGATTCGTACAAAA 57.303 34.783 0.00 0.00 0.00 2.44
1360 1635 5.895636 TTGCATGGAGATTCGTACAAAAT 57.104 34.783 0.00 0.00 0.00 1.82
1361 1636 6.993786 TTGCATGGAGATTCGTACAAAATA 57.006 33.333 0.00 0.00 0.00 1.40
1362 1637 6.993786 TGCATGGAGATTCGTACAAAATAA 57.006 33.333 0.00 0.00 0.00 1.40
1363 1638 7.566760 TGCATGGAGATTCGTACAAAATAAT 57.433 32.000 0.00 0.00 0.00 1.28
1364 1639 7.995289 TGCATGGAGATTCGTACAAAATAATT 58.005 30.769 0.00 0.00 0.00 1.40
1365 1640 8.128582 TGCATGGAGATTCGTACAAAATAATTC 58.871 33.333 0.00 0.00 0.00 2.17
1366 1641 8.345565 GCATGGAGATTCGTACAAAATAATTCT 58.654 33.333 0.00 0.00 0.00 2.40
1419 1694 7.921786 ATCATTTAATTGAGACTTGGTTCGA 57.078 32.000 6.26 0.00 0.00 3.71
1420 1695 7.129109 TCATTTAATTGAGACTTGGTTCGAC 57.871 36.000 0.00 0.00 0.00 4.20
1421 1696 6.934645 TCATTTAATTGAGACTTGGTTCGACT 59.065 34.615 0.00 0.00 0.00 4.18
1422 1697 6.539649 TTTAATTGAGACTTGGTTCGACTG 57.460 37.500 0.00 0.00 0.00 3.51
1423 1698 4.336889 AATTGAGACTTGGTTCGACTGA 57.663 40.909 0.00 0.00 0.00 3.41
1424 1699 3.371102 TTGAGACTTGGTTCGACTGAG 57.629 47.619 0.00 0.00 0.00 3.35
1425 1700 2.583143 TGAGACTTGGTTCGACTGAGA 58.417 47.619 0.00 0.00 0.00 3.27
1426 1701 2.293677 TGAGACTTGGTTCGACTGAGAC 59.706 50.000 0.00 0.00 0.00 3.36
1427 1702 2.293677 GAGACTTGGTTCGACTGAGACA 59.706 50.000 0.00 0.00 0.00 3.41
1428 1703 2.034812 AGACTTGGTTCGACTGAGACAC 59.965 50.000 0.00 0.00 0.00 3.67
1429 1704 1.068741 ACTTGGTTCGACTGAGACACC 59.931 52.381 0.00 0.00 0.00 4.16
1430 1705 0.391597 TTGGTTCGACTGAGACACCC 59.608 55.000 0.00 0.00 0.00 4.61
1431 1706 0.469331 TGGTTCGACTGAGACACCCT 60.469 55.000 0.00 0.00 0.00 4.34
1432 1707 1.202964 TGGTTCGACTGAGACACCCTA 60.203 52.381 0.00 0.00 0.00 3.53
1433 1708 1.891150 GGTTCGACTGAGACACCCTAA 59.109 52.381 0.00 0.00 0.00 2.69
1434 1709 2.298163 GGTTCGACTGAGACACCCTAAA 59.702 50.000 0.00 0.00 0.00 1.85
1435 1710 3.576648 GTTCGACTGAGACACCCTAAAG 58.423 50.000 0.00 0.00 0.00 1.85
1436 1711 2.872732 TCGACTGAGACACCCTAAAGT 58.127 47.619 0.00 0.00 0.00 2.66
1437 1712 4.025040 TCGACTGAGACACCCTAAAGTA 57.975 45.455 0.00 0.00 0.00 2.24
1438 1713 4.401022 TCGACTGAGACACCCTAAAGTAA 58.599 43.478 0.00 0.00 0.00 2.24
1439 1714 4.828939 TCGACTGAGACACCCTAAAGTAAA 59.171 41.667 0.00 0.00 0.00 2.01
1440 1715 5.048224 TCGACTGAGACACCCTAAAGTAAAG 60.048 44.000 0.00 0.00 0.00 1.85
1441 1716 5.048224 CGACTGAGACACCCTAAAGTAAAGA 60.048 44.000 0.00 0.00 0.00 2.52
1442 1717 6.516194 CGACTGAGACACCCTAAAGTAAAGAA 60.516 42.308 0.00 0.00 0.00 2.52
1443 1718 7.133133 ACTGAGACACCCTAAAGTAAAGAAA 57.867 36.000 0.00 0.00 0.00 2.52
1444 1719 7.571025 ACTGAGACACCCTAAAGTAAAGAAAA 58.429 34.615 0.00 0.00 0.00 2.29
1445 1720 8.050930 ACTGAGACACCCTAAAGTAAAGAAAAA 58.949 33.333 0.00 0.00 0.00 1.94
1479 1754 6.142817 ACGCACTGTAATCTTTTGTTTGATC 58.857 36.000 0.00 0.00 0.00 2.92
1483 1758 7.536622 GCACTGTAATCTTTTGTTTGATCAGAG 59.463 37.037 0.00 0.00 0.00 3.35
1494 1769 7.687941 TTGTTTGATCAGAGGGAGAAATAAC 57.312 36.000 0.00 0.00 0.00 1.89
1504 1779 7.944554 TCAGAGGGAGAAATAACTTTGTTCAAT 59.055 33.333 0.00 0.00 0.00 2.57
1528 1803 2.675889 GCCCACGTAGAATCTCCGAAAA 60.676 50.000 1.42 0.00 0.00 2.29
1537 1812 6.637658 CGTAGAATCTCCGAAAAGAAGGATAC 59.362 42.308 0.00 0.00 35.75 2.24
1582 1857 5.835113 GGATTTGATTTTTGAGATCCGGA 57.165 39.130 6.61 6.61 0.00 5.14
1586 1861 6.398234 TTTGATTTTTGAGATCCGGACAAA 57.602 33.333 6.12 10.75 0.00 2.83
1612 1888 2.569853 TGGAAGATCGGCCAAAAGTCTA 59.430 45.455 2.24 0.00 0.00 2.59
1615 1891 3.252974 AGATCGGCCAAAAGTCTACAG 57.747 47.619 2.24 0.00 0.00 2.74
1762 2049 3.074412 CCAGCCTTGCCTATATAAACCG 58.926 50.000 0.00 0.00 0.00 4.44
1766 2053 3.497262 GCCTTGCCTATATAAACCGTCAC 59.503 47.826 0.00 0.00 0.00 3.67
1815 2102 0.042188 CACACGCACCAAGAAACGAG 60.042 55.000 0.00 0.00 0.00 4.18
1827 2114 6.423905 CACCAAGAAACGAGACAGATTAAGAA 59.576 38.462 0.00 0.00 0.00 2.52
1991 2279 2.116827 TGCTGTCATGCATCATGTCA 57.883 45.000 0.00 6.63 41.98 3.58
1992 2280 2.650322 TGCTGTCATGCATCATGTCAT 58.350 42.857 0.00 0.00 41.98 3.06
1993 2281 2.357637 TGCTGTCATGCATCATGTCATG 59.642 45.455 6.47 6.47 41.98 3.07
1994 2282 2.357952 GCTGTCATGCATCATGTCATGT 59.642 45.455 12.54 0.00 41.98 3.21
2000 2288 1.066286 TGCATCATGTCATGTGTCCGA 60.066 47.619 12.54 0.00 0.00 4.55
2003 2291 2.208326 TCATGTCATGTGTCCGATCG 57.792 50.000 8.51 8.51 0.00 3.69
2012 2300 1.278238 GTGTCCGATCGTCATTCACC 58.722 55.000 15.09 0.00 0.00 4.02
2224 2532 4.767255 GTGAGGGAGGCCACGCTG 62.767 72.222 24.13 0.00 33.36 5.18
2407 2715 3.117963 CCATCAAGGAGGAGATGAAGCTT 60.118 47.826 0.00 0.00 43.28 3.74
2464 2774 4.548451 TTCATGAGCTCTCTGTTGTGAT 57.452 40.909 16.19 0.00 0.00 3.06
2465 2775 5.665916 TTCATGAGCTCTCTGTTGTGATA 57.334 39.130 16.19 0.00 0.00 2.15
2478 2796 5.409214 TCTGTTGTGATATGTCATGTGTGTG 59.591 40.000 0.00 0.00 36.60 3.82
2490 2810 2.143008 TGTGTGTGCTGTACCGTAAG 57.857 50.000 0.00 0.00 0.00 2.34
2589 2911 9.595823 TTCCTTCGGTTTATTTCATACTCTAAG 57.404 33.333 0.00 0.00 0.00 2.18
2590 2912 8.974238 TCCTTCGGTTTATTTCATACTCTAAGA 58.026 33.333 0.00 0.00 0.00 2.10
2591 2913 9.250624 CCTTCGGTTTATTTCATACTCTAAGAG 57.749 37.037 0.00 0.00 35.52 2.85
2592 2914 8.644318 TTCGGTTTATTTCATACTCTAAGAGC 57.356 34.615 0.00 0.00 32.04 4.09
2593 2915 7.778083 TCGGTTTATTTCATACTCTAAGAGCA 58.222 34.615 0.00 0.00 32.04 4.26
2594 2916 8.421784 TCGGTTTATTTCATACTCTAAGAGCAT 58.578 33.333 0.00 0.00 32.04 3.79
2595 2917 9.046296 CGGTTTATTTCATACTCTAAGAGCATT 57.954 33.333 0.00 0.00 32.04 3.56
2601 2923 9.638176 ATTTCATACTCTAAGAGCATTTCCAAT 57.362 29.630 0.00 0.00 32.04 3.16
2603 2925 9.770097 TTCATACTCTAAGAGCATTTCCAATAG 57.230 33.333 0.00 0.00 32.04 1.73
2604 2926 9.147732 TCATACTCTAAGAGCATTTCCAATAGA 57.852 33.333 0.00 0.00 32.04 1.98
2605 2927 9.202273 CATACTCTAAGAGCATTTCCAATAGAC 57.798 37.037 0.00 0.00 32.04 2.59
2606 2928 6.276847 ACTCTAAGAGCATTTCCAATAGACG 58.723 40.000 0.00 0.00 32.04 4.18
2607 2929 5.601662 TCTAAGAGCATTTCCAATAGACGG 58.398 41.667 0.00 0.00 0.00 4.79
2608 2930 3.914426 AGAGCATTTCCAATAGACGGT 57.086 42.857 0.00 0.00 0.00 4.83
2609 2931 5.353394 AAGAGCATTTCCAATAGACGGTA 57.647 39.130 0.00 0.00 0.00 4.02
2610 2932 4.694339 AGAGCATTTCCAATAGACGGTAC 58.306 43.478 0.00 0.00 0.00 3.34
2611 2933 4.161565 AGAGCATTTCCAATAGACGGTACA 59.838 41.667 0.00 0.00 0.00 2.90
2612 2934 4.839121 AGCATTTCCAATAGACGGTACAA 58.161 39.130 0.00 0.00 0.00 2.41
2613 2935 5.250200 AGCATTTCCAATAGACGGTACAAA 58.750 37.500 0.00 0.00 0.00 2.83
2614 2936 5.885912 AGCATTTCCAATAGACGGTACAAAT 59.114 36.000 0.00 0.00 0.00 2.32
2615 2937 5.971202 GCATTTCCAATAGACGGTACAAATG 59.029 40.000 0.00 0.00 32.44 2.32
2616 2938 6.404293 GCATTTCCAATAGACGGTACAAATGT 60.404 38.462 0.00 0.00 32.13 2.71
2617 2939 7.201661 GCATTTCCAATAGACGGTACAAATGTA 60.202 37.037 0.00 0.00 32.13 2.29
2618 2940 8.670135 CATTTCCAATAGACGGTACAAATGTAA 58.330 33.333 0.00 0.00 31.52 2.41
2619 2941 8.618702 TTTCCAATAGACGGTACAAATGTAAA 57.381 30.769 0.00 0.00 31.52 2.01
2620 2942 8.618702 TTCCAATAGACGGTACAAATGTAAAA 57.381 30.769 0.00 0.00 31.52 1.52
2621 2943 8.618702 TCCAATAGACGGTACAAATGTAAAAA 57.381 30.769 0.00 0.00 31.52 1.94
2622 2944 9.233649 TCCAATAGACGGTACAAATGTAAAAAT 57.766 29.630 0.00 0.00 31.52 1.82
2639 2961 9.902196 ATGTAAAAATACTTAACCTTTGAACCG 57.098 29.630 0.00 0.00 0.00 4.44
2640 2962 8.901793 TGTAAAAATACTTAACCTTTGAACCGT 58.098 29.630 0.00 0.00 0.00 4.83
2641 2963 9.385902 GTAAAAATACTTAACCTTTGAACCGTC 57.614 33.333 0.00 0.00 0.00 4.79
2642 2964 7.812690 AAAATACTTAACCTTTGAACCGTCT 57.187 32.000 0.00 0.00 0.00 4.18
2643 2965 7.430992 AAATACTTAACCTTTGAACCGTCTC 57.569 36.000 0.00 0.00 0.00 3.36
2644 2966 3.387397 ACTTAACCTTTGAACCGTCTCG 58.613 45.455 0.00 0.00 0.00 4.04
2667 2989 3.944871 AAAAACGCTGCTCCAACAG 57.055 47.368 0.00 0.00 40.80 3.16
2668 2990 1.388547 AAAAACGCTGCTCCAACAGA 58.611 45.000 0.00 0.00 40.25 3.41
2669 2991 1.388547 AAAACGCTGCTCCAACAGAA 58.611 45.000 0.00 0.00 40.25 3.02
2670 2992 0.947244 AAACGCTGCTCCAACAGAAG 59.053 50.000 0.00 0.00 40.25 2.85
2671 2993 0.886490 AACGCTGCTCCAACAGAAGG 60.886 55.000 0.00 0.00 40.25 3.46
2672 2994 1.302033 CGCTGCTCCAACAGAAGGT 60.302 57.895 0.00 0.00 40.25 3.50
2673 2995 1.294659 CGCTGCTCCAACAGAAGGTC 61.295 60.000 0.00 0.00 40.25 3.85
2674 2996 0.957888 GCTGCTCCAACAGAAGGTCC 60.958 60.000 0.00 0.00 40.25 4.46
2675 2997 0.397941 CTGCTCCAACAGAAGGTCCA 59.602 55.000 0.00 0.00 40.25 4.02
2676 2998 1.004044 CTGCTCCAACAGAAGGTCCAT 59.996 52.381 0.00 0.00 40.25 3.41
2677 2999 2.237143 CTGCTCCAACAGAAGGTCCATA 59.763 50.000 0.00 0.00 40.25 2.74
2678 3000 2.846206 TGCTCCAACAGAAGGTCCATAT 59.154 45.455 0.00 0.00 0.00 1.78
2679 3001 3.209410 GCTCCAACAGAAGGTCCATATG 58.791 50.000 0.00 0.00 0.00 1.78
2680 3002 3.370953 GCTCCAACAGAAGGTCCATATGT 60.371 47.826 1.24 0.00 0.00 2.29
2681 3003 4.141711 GCTCCAACAGAAGGTCCATATGTA 60.142 45.833 1.24 0.00 0.00 2.29
2682 3004 5.629133 GCTCCAACAGAAGGTCCATATGTAA 60.629 44.000 1.24 0.00 0.00 2.41
2683 3005 6.381498 TCCAACAGAAGGTCCATATGTAAA 57.619 37.500 1.24 0.00 0.00 2.01
2684 3006 6.785076 TCCAACAGAAGGTCCATATGTAAAA 58.215 36.000 1.24 0.00 0.00 1.52
2685 3007 7.235079 TCCAACAGAAGGTCCATATGTAAAAA 58.765 34.615 1.24 0.00 0.00 1.94
2686 3008 7.393234 TCCAACAGAAGGTCCATATGTAAAAAG 59.607 37.037 1.24 0.00 0.00 2.27
2687 3009 7.393234 CCAACAGAAGGTCCATATGTAAAAAGA 59.607 37.037 1.24 0.00 0.00 2.52
2688 3010 8.792633 CAACAGAAGGTCCATATGTAAAAAGAA 58.207 33.333 1.24 0.00 0.00 2.52
2689 3011 9.533831 AACAGAAGGTCCATATGTAAAAAGAAT 57.466 29.630 1.24 0.00 0.00 2.40
2690 3012 9.533831 ACAGAAGGTCCATATGTAAAAAGAATT 57.466 29.630 1.24 0.00 0.00 2.17
2695 3017 9.628500 AGGTCCATATGTAAAAAGAATTAGACC 57.372 33.333 1.24 6.42 38.22 3.85
2696 3018 8.557029 GGTCCATATGTAAAAAGAATTAGACCG 58.443 37.037 1.24 0.00 0.00 4.79
2697 3019 8.068380 GTCCATATGTAAAAAGAATTAGACCGC 58.932 37.037 1.24 0.00 0.00 5.68
2698 3020 7.771361 TCCATATGTAAAAAGAATTAGACCGCA 59.229 33.333 1.24 0.00 0.00 5.69
2699 3021 8.070171 CCATATGTAAAAAGAATTAGACCGCAG 58.930 37.037 1.24 0.00 0.00 5.18
2700 3022 5.291293 TGTAAAAAGAATTAGACCGCAGC 57.709 39.130 0.00 0.00 0.00 5.25
2701 3023 3.850122 AAAAAGAATTAGACCGCAGCC 57.150 42.857 0.00 0.00 0.00 4.85
2702 3024 2.789409 AAAGAATTAGACCGCAGCCT 57.211 45.000 0.00 0.00 0.00 4.58
2703 3025 2.317530 AAGAATTAGACCGCAGCCTC 57.682 50.000 0.00 0.00 0.00 4.70
2704 3026 0.466124 AGAATTAGACCGCAGCCTCC 59.534 55.000 0.00 0.00 0.00 4.30
2770 3092 4.128925 TCCATTGAAGATCAAGTCTCCG 57.871 45.455 0.00 0.00 40.05 4.63
2778 3100 3.687125 AGATCAAGTCTCCGCGGATATA 58.313 45.455 31.19 14.85 28.45 0.86
3001 3323 4.037923 GGAACTCTCAATGAAAGCACCAAA 59.962 41.667 0.00 0.00 0.00 3.28
3141 3463 3.283259 AATACCCTACTTCCTGCTTGC 57.717 47.619 0.00 0.00 0.00 4.01
3182 3505 4.863131 GGGTGTTACAAGAGTTGATCTACG 59.137 45.833 1.55 0.00 37.23 3.51
3266 3589 1.528292 ATCCGGACTATGCTCTCCGC 61.528 60.000 6.12 0.00 46.83 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.808008 AAGCCGATTGTCAAATATATGAGG 57.192 37.500 0.00 0.00 0.00 3.86
37 38 0.834687 TTAAGTGCTCACGGGGTCCT 60.835 55.000 0.00 0.00 36.20 3.85
161 162 8.491134 TGAGTTAATAGGAAAAAGCATAGCCTA 58.509 33.333 0.00 0.00 35.83 3.93
167 168 9.905713 TCATAGTGAGTTAATAGGAAAAAGCAT 57.094 29.630 0.00 0.00 0.00 3.79
188 189 5.313520 TGCAACATTGACCAACATCATAG 57.686 39.130 0.00 0.00 0.00 2.23
213 214 3.152341 CTCCTTCATTGCCAGTCTGTTT 58.848 45.455 0.00 0.00 0.00 2.83
216 217 1.681166 CCCTCCTTCATTGCCAGTCTG 60.681 57.143 0.00 0.00 0.00 3.51
221 222 0.396139 GATGCCCTCCTTCATTGCCA 60.396 55.000 0.00 0.00 0.00 4.92
260 268 1.000283 AGTGTCTGTTCTGGAGCTTCG 60.000 52.381 0.00 0.00 0.00 3.79
357 366 5.531753 CTATGGGGTCAGTCCTATAGGTA 57.468 47.826 18.51 2.88 41.70 3.08
366 375 7.559897 TGAAAAATAAATCCTATGGGGTCAGTC 59.440 37.037 0.00 0.00 36.25 3.51
428 437 7.180051 AGCCATCACCTATTTTGGAACATAAAA 59.820 33.333 0.00 0.00 39.30 1.52
530 540 6.867293 ACCTCAAACGTCTTATGAAAGTCTAC 59.133 38.462 0.00 0.00 34.13 2.59
540 550 5.979288 AGTAGTGACCTCAAACGTCTTAT 57.021 39.130 0.00 0.00 0.00 1.73
568 578 4.227197 TCTCTTTCAGATGATACCCCCTC 58.773 47.826 0.00 0.00 0.00 4.30
570 580 4.410555 ACTTCTCTTTCAGATGATACCCCC 59.589 45.833 0.00 0.00 31.83 5.40
578 588 3.008330 CTGCCCACTTCTCTTTCAGATG 58.992 50.000 0.00 0.00 33.32 2.90
614 873 2.294078 ACAGCCTGTCCCCTAGCAC 61.294 63.158 0.00 0.00 0.00 4.40
615 874 2.122729 ACAGCCTGTCCCCTAGCA 59.877 61.111 0.00 0.00 0.00 3.49
646 905 2.262774 AATCTTCAGCTCCAGCCGGG 62.263 60.000 2.18 0.00 43.38 5.73
647 906 0.393537 AAATCTTCAGCTCCAGCCGG 60.394 55.000 0.00 0.00 43.38 6.13
648 907 1.399791 GAAAATCTTCAGCTCCAGCCG 59.600 52.381 0.00 0.00 43.38 5.52
649 908 1.747924 GGAAAATCTTCAGCTCCAGCC 59.252 52.381 0.00 0.00 43.38 4.85
650 909 2.720915 AGGAAAATCTTCAGCTCCAGC 58.279 47.619 0.00 0.00 42.49 4.85
651 910 4.617762 GCAAAGGAAAATCTTCAGCTCCAG 60.618 45.833 0.00 0.00 32.75 3.86
652 911 3.256631 GCAAAGGAAAATCTTCAGCTCCA 59.743 43.478 0.00 0.00 32.75 3.86
653 912 3.367806 GGCAAAGGAAAATCTTCAGCTCC 60.368 47.826 0.00 0.00 32.75 4.70
654 913 3.671702 CGGCAAAGGAAAATCTTCAGCTC 60.672 47.826 0.00 0.00 32.75 4.09
655 914 2.229784 CGGCAAAGGAAAATCTTCAGCT 59.770 45.455 0.00 0.00 32.75 4.24
656 915 2.599659 CGGCAAAGGAAAATCTTCAGC 58.400 47.619 0.00 0.00 32.75 4.26
657 916 2.229784 AGCGGCAAAGGAAAATCTTCAG 59.770 45.455 1.45 0.00 32.75 3.02
658 917 2.228822 GAGCGGCAAAGGAAAATCTTCA 59.771 45.455 1.45 0.00 32.75 3.02
659 918 2.416027 GGAGCGGCAAAGGAAAATCTTC 60.416 50.000 1.45 0.00 0.00 2.87
660 919 1.546029 GGAGCGGCAAAGGAAAATCTT 59.454 47.619 1.45 0.00 0.00 2.40
661 920 1.177401 GGAGCGGCAAAGGAAAATCT 58.823 50.000 1.45 0.00 0.00 2.40
662 921 0.173481 GGGAGCGGCAAAGGAAAATC 59.827 55.000 1.45 0.00 0.00 2.17
663 922 1.595093 CGGGAGCGGCAAAGGAAAAT 61.595 55.000 1.45 0.00 0.00 1.82
664 923 2.265182 CGGGAGCGGCAAAGGAAAA 61.265 57.895 1.45 0.00 0.00 2.29
665 924 2.671619 CGGGAGCGGCAAAGGAAA 60.672 61.111 1.45 0.00 0.00 3.13
682 941 3.809374 CTCCATCCCGGCCGTTAGC 62.809 68.421 26.12 0.00 42.60 3.09
683 942 2.421739 CTCCATCCCGGCCGTTAG 59.578 66.667 26.12 12.76 33.14 2.34
684 943 3.857038 GCTCCATCCCGGCCGTTA 61.857 66.667 26.12 12.23 33.14 3.18
696 955 2.606213 TCACCGTGATGGGCTCCA 60.606 61.111 0.00 0.00 44.64 3.86
697 956 2.125106 GTCACCGTGATGGGCTCC 60.125 66.667 4.13 0.00 44.64 4.70
698 957 2.125106 GGTCACCGTGATGGGCTC 60.125 66.667 4.13 0.00 44.64 4.70
699 958 4.082523 CGGTCACCGTGATGGGCT 62.083 66.667 8.54 0.00 44.64 5.19
708 967 1.581912 CGATCACGTACGGTCACCG 60.582 63.158 16.81 16.81 42.90 4.94
709 968 4.372235 CGATCACGTACGGTCACC 57.628 61.111 21.06 3.70 34.56 4.02
732 991 0.179258 GCGACGTTGATCCGTGAAAC 60.179 55.000 7.08 0.00 41.98 2.78
733 992 0.319211 AGCGACGTTGATCCGTGAAA 60.319 50.000 7.08 0.00 41.98 2.69
734 993 0.731514 GAGCGACGTTGATCCGTGAA 60.732 55.000 10.02 0.00 41.98 3.18
735 994 1.154093 GAGCGACGTTGATCCGTGA 60.154 57.895 10.02 0.00 41.98 4.35
736 995 2.158959 GGAGCGACGTTGATCCGTG 61.159 63.158 23.62 0.00 41.98 4.94
737 996 2.181021 GGAGCGACGTTGATCCGT 59.819 61.111 23.62 0.00 45.18 4.69
739 998 0.876342 GGATGGAGCGACGTTGATCC 60.876 60.000 29.50 29.50 44.73 3.36
740 999 0.103208 AGGATGGAGCGACGTTGATC 59.897 55.000 12.75 12.75 0.00 2.92
741 1000 1.067212 GTAGGATGGAGCGACGTTGAT 59.933 52.381 7.08 0.00 0.00 2.57
742 1001 0.454600 GTAGGATGGAGCGACGTTGA 59.545 55.000 7.08 0.00 0.00 3.18
743 1002 0.456221 AGTAGGATGGAGCGACGTTG 59.544 55.000 0.00 0.00 0.00 4.10
744 1003 0.739561 GAGTAGGATGGAGCGACGTT 59.260 55.000 0.00 0.00 0.00 3.99
745 1004 1.102222 GGAGTAGGATGGAGCGACGT 61.102 60.000 0.00 0.00 0.00 4.34
746 1005 0.820074 AGGAGTAGGATGGAGCGACG 60.820 60.000 0.00 0.00 0.00 5.12
747 1006 1.067821 CAAGGAGTAGGATGGAGCGAC 59.932 57.143 0.00 0.00 0.00 5.19
748 1007 1.403814 CAAGGAGTAGGATGGAGCGA 58.596 55.000 0.00 0.00 0.00 4.93
749 1008 0.390860 CCAAGGAGTAGGATGGAGCG 59.609 60.000 0.00 0.00 34.82 5.03
750 1009 0.107643 GCCAAGGAGTAGGATGGAGC 59.892 60.000 0.00 0.00 34.82 4.70
751 1010 0.761802 GGCCAAGGAGTAGGATGGAG 59.238 60.000 0.00 0.00 34.82 3.86
752 1011 1.048724 CGGCCAAGGAGTAGGATGGA 61.049 60.000 2.24 0.00 34.82 3.41
753 1012 1.447643 CGGCCAAGGAGTAGGATGG 59.552 63.158 2.24 0.00 36.00 3.51
754 1013 1.227674 GCGGCCAAGGAGTAGGATG 60.228 63.158 2.24 0.00 0.00 3.51
755 1014 0.105658 TAGCGGCCAAGGAGTAGGAT 60.106 55.000 2.24 0.00 0.00 3.24
756 1015 0.755698 CTAGCGGCCAAGGAGTAGGA 60.756 60.000 2.24 0.00 0.00 2.94
757 1016 1.742768 CTAGCGGCCAAGGAGTAGG 59.257 63.158 2.24 0.00 0.00 3.18
758 1017 1.068250 GCTAGCGGCCAAGGAGTAG 59.932 63.158 2.24 0.00 34.27 2.57
759 1018 2.782222 CGCTAGCGGCCAAGGAGTA 61.782 63.158 29.29 0.00 37.74 2.59
760 1019 4.148825 CGCTAGCGGCCAAGGAGT 62.149 66.667 29.29 0.00 37.74 3.85
761 1020 3.838271 TCGCTAGCGGCCAAGGAG 61.838 66.667 34.76 5.69 40.25 3.69
762 1021 4.143333 GTCGCTAGCGGCCAAGGA 62.143 66.667 34.76 12.86 38.20 3.36
769 1028 3.217017 TAGCTGGGTCGCTAGCGG 61.217 66.667 34.76 20.21 44.43 5.52
773 1032 0.183014 AGTAGCTAGCTGGGTCGCTA 59.817 55.000 27.68 0.85 41.30 4.26
774 1033 0.183014 TAGTAGCTAGCTGGGTCGCT 59.817 55.000 27.68 15.79 43.83 4.93
775 1034 0.311477 GTAGTAGCTAGCTGGGTCGC 59.689 60.000 27.68 8.58 0.00 5.19
776 1035 1.970092 AGTAGTAGCTAGCTGGGTCG 58.030 55.000 27.68 0.00 0.00 4.79
777 1036 4.354893 TCTAGTAGTAGCTAGCTGGGTC 57.645 50.000 27.68 14.32 38.58 4.46
778 1037 4.351407 TGATCTAGTAGTAGCTAGCTGGGT 59.649 45.833 27.68 13.40 38.58 4.51
779 1038 4.912586 TGATCTAGTAGTAGCTAGCTGGG 58.087 47.826 27.68 8.86 38.58 4.45
780 1039 5.943416 ACATGATCTAGTAGTAGCTAGCTGG 59.057 44.000 27.68 1.67 38.58 4.85
781 1040 6.183360 CGACATGATCTAGTAGTAGCTAGCTG 60.183 46.154 27.68 8.59 38.58 4.24
782 1041 5.872617 CGACATGATCTAGTAGTAGCTAGCT 59.127 44.000 23.12 23.12 38.58 3.32
783 1042 5.640357 ACGACATGATCTAGTAGTAGCTAGC 59.360 44.000 6.62 6.62 38.58 3.42
784 1043 7.094631 AGACGACATGATCTAGTAGTAGCTAG 58.905 42.308 0.00 0.00 39.70 3.42
785 1044 6.995364 AGACGACATGATCTAGTAGTAGCTA 58.005 40.000 0.00 0.00 0.00 3.32
786 1045 5.860611 AGACGACATGATCTAGTAGTAGCT 58.139 41.667 0.00 0.00 0.00 3.32
787 1046 5.164031 CGAGACGACATGATCTAGTAGTAGC 60.164 48.000 0.00 0.00 0.00 3.58
788 1047 5.921976 ACGAGACGACATGATCTAGTAGTAG 59.078 44.000 0.00 0.00 30.13 2.57
789 1048 5.840715 ACGAGACGACATGATCTAGTAGTA 58.159 41.667 0.00 0.00 30.13 1.82
790 1049 4.695396 ACGAGACGACATGATCTAGTAGT 58.305 43.478 0.00 0.00 30.13 2.73
791 1050 4.143494 CGACGAGACGACATGATCTAGTAG 60.143 50.000 0.00 2.99 31.82 2.57
792 1051 3.734735 CGACGAGACGACATGATCTAGTA 59.265 47.826 0.00 0.00 31.82 1.82
793 1052 2.540516 CGACGAGACGACATGATCTAGT 59.459 50.000 0.00 5.82 34.02 2.57
794 1053 2.660631 GCGACGAGACGACATGATCTAG 60.661 54.545 0.00 2.51 35.09 2.43
795 1054 1.260825 GCGACGAGACGACATGATCTA 59.739 52.381 0.00 0.00 35.09 1.98
796 1055 0.028242 GCGACGAGACGACATGATCT 59.972 55.000 0.00 0.00 35.09 2.75
797 1056 0.248094 TGCGACGAGACGACATGATC 60.248 55.000 0.00 0.00 35.09 2.92
798 1057 0.523546 GTGCGACGAGACGACATGAT 60.524 55.000 0.00 0.00 35.09 2.45
799 1058 1.154282 GTGCGACGAGACGACATGA 60.154 57.895 0.00 0.00 35.09 3.07
800 1059 2.152699 GGTGCGACGAGACGACATG 61.153 63.158 0.00 0.00 35.09 3.21
801 1060 2.178521 GGTGCGACGAGACGACAT 59.821 61.111 0.00 0.00 35.09 3.06
802 1061 2.962827 GAGGTGCGACGAGACGACA 61.963 63.158 0.00 0.00 35.09 4.35
803 1062 2.202324 GAGGTGCGACGAGACGAC 60.202 66.667 0.00 0.00 35.09 4.34
804 1063 3.429141 GGAGGTGCGACGAGACGA 61.429 66.667 0.00 0.00 35.09 4.20
805 1064 3.733960 TGGAGGTGCGACGAGACG 61.734 66.667 0.00 0.00 0.00 4.18
806 1065 2.126424 GTGGAGGTGCGACGAGAC 60.126 66.667 0.00 0.00 0.00 3.36
807 1066 2.282251 AGTGGAGGTGCGACGAGA 60.282 61.111 0.00 0.00 0.00 4.04
808 1067 2.126307 CAGTGGAGGTGCGACGAG 60.126 66.667 0.00 0.00 0.00 4.18
809 1068 3.680786 CCAGTGGAGGTGCGACGA 61.681 66.667 1.68 0.00 0.00 4.20
810 1069 3.680786 TCCAGTGGAGGTGCGACG 61.681 66.667 8.12 0.00 0.00 5.12
811 1070 2.048127 GTCCAGTGGAGGTGCGAC 60.048 66.667 13.61 0.00 29.39 5.19
812 1071 2.523168 TGTCCAGTGGAGGTGCGA 60.523 61.111 13.61 0.00 29.39 5.10
813 1072 2.047844 CTGTCCAGTGGAGGTGCG 60.048 66.667 13.61 0.00 29.39 5.34
814 1073 2.348998 CCTGTCCAGTGGAGGTGC 59.651 66.667 13.61 0.63 29.39 5.01
815 1074 3.072476 CCCTGTCCAGTGGAGGTG 58.928 66.667 13.61 5.56 29.39 4.00
816 1075 2.930562 GCCCTGTCCAGTGGAGGT 60.931 66.667 13.61 0.00 29.39 3.85
817 1076 2.930019 TGCCCTGTCCAGTGGAGG 60.930 66.667 13.61 12.01 29.39 4.30
818 1077 2.667418 CTGCCCTGTCCAGTGGAG 59.333 66.667 13.61 1.07 29.39 3.86
819 1078 2.930019 CCTGCCCTGTCCAGTGGA 60.930 66.667 8.12 8.12 0.00 4.02
820 1079 4.729918 GCCTGCCCTGTCCAGTGG 62.730 72.222 1.40 1.40 0.00 4.00
823 1082 3.551496 TTTCGCCTGCCCTGTCCAG 62.551 63.158 0.00 0.00 0.00 3.86
824 1083 3.565214 TTTCGCCTGCCCTGTCCA 61.565 61.111 0.00 0.00 0.00 4.02
825 1084 3.056328 GTTTCGCCTGCCCTGTCC 61.056 66.667 0.00 0.00 0.00 4.02
826 1085 1.172812 AAAGTTTCGCCTGCCCTGTC 61.173 55.000 0.00 0.00 0.00 3.51
827 1086 1.152756 AAAGTTTCGCCTGCCCTGT 60.153 52.632 0.00 0.00 0.00 4.00
828 1087 1.286880 CAAAGTTTCGCCTGCCCTG 59.713 57.895 0.00 0.00 0.00 4.45
829 1088 2.564721 GCAAAGTTTCGCCTGCCCT 61.565 57.895 0.00 0.00 0.00 5.19
830 1089 2.049156 GCAAAGTTTCGCCTGCCC 60.049 61.111 0.00 0.00 0.00 5.36
831 1090 2.429069 CGCAAAGTTTCGCCTGCC 60.429 61.111 4.99 0.00 0.00 4.85
832 1091 1.725973 GTCGCAAAGTTTCGCCTGC 60.726 57.895 4.99 0.00 0.00 4.85
833 1092 0.307760 AAGTCGCAAAGTTTCGCCTG 59.692 50.000 4.99 0.00 0.00 4.85
834 1093 0.307760 CAAGTCGCAAAGTTTCGCCT 59.692 50.000 4.99 0.00 0.00 5.52
835 1094 0.028902 ACAAGTCGCAAAGTTTCGCC 59.971 50.000 4.99 0.00 0.00 5.54
836 1095 1.112459 CACAAGTCGCAAAGTTTCGC 58.888 50.000 0.00 0.00 0.00 4.70
837 1096 2.101125 CACACAAGTCGCAAAGTTTCG 58.899 47.619 0.00 0.00 0.00 3.46
838 1097 1.846175 GCACACAAGTCGCAAAGTTTC 59.154 47.619 0.00 0.00 0.00 2.78
839 1098 1.472480 AGCACACAAGTCGCAAAGTTT 59.528 42.857 0.00 0.00 0.00 2.66
840 1099 1.094785 AGCACACAAGTCGCAAAGTT 58.905 45.000 0.00 0.00 0.00 2.66
841 1100 1.064060 GAAGCACACAAGTCGCAAAGT 59.936 47.619 0.00 0.00 0.00 2.66
842 1101 1.597937 GGAAGCACACAAGTCGCAAAG 60.598 52.381 0.00 0.00 0.00 2.77
843 1102 0.380378 GGAAGCACACAAGTCGCAAA 59.620 50.000 0.00 0.00 0.00 3.68
844 1103 1.444119 GGGAAGCACACAAGTCGCAA 61.444 55.000 0.00 0.00 0.00 4.85
845 1104 1.891919 GGGAAGCACACAAGTCGCA 60.892 57.895 0.00 0.00 0.00 5.10
846 1105 1.166531 AAGGGAAGCACACAAGTCGC 61.167 55.000 0.00 0.00 0.00 5.19
847 1106 0.868406 GAAGGGAAGCACACAAGTCG 59.132 55.000 0.00 0.00 0.00 4.18
848 1107 1.202818 AGGAAGGGAAGCACACAAGTC 60.203 52.381 0.00 0.00 0.00 3.01
849 1108 0.846693 AGGAAGGGAAGCACACAAGT 59.153 50.000 0.00 0.00 0.00 3.16
850 1109 1.202806 TCAGGAAGGGAAGCACACAAG 60.203 52.381 0.00 0.00 0.00 3.16
851 1110 0.843309 TCAGGAAGGGAAGCACACAA 59.157 50.000 0.00 0.00 0.00 3.33
852 1111 0.108585 GTCAGGAAGGGAAGCACACA 59.891 55.000 0.00 0.00 0.00 3.72
853 1112 0.951040 CGTCAGGAAGGGAAGCACAC 60.951 60.000 0.00 0.00 0.00 3.82
854 1113 1.371183 CGTCAGGAAGGGAAGCACA 59.629 57.895 0.00 0.00 0.00 4.57
855 1114 0.670854 GACGTCAGGAAGGGAAGCAC 60.671 60.000 11.55 0.00 0.00 4.40
856 1115 1.118965 TGACGTCAGGAAGGGAAGCA 61.119 55.000 15.76 0.00 0.00 3.91
857 1116 0.250513 ATGACGTCAGGAAGGGAAGC 59.749 55.000 24.41 0.00 0.00 3.86
858 1117 4.122776 CAATATGACGTCAGGAAGGGAAG 58.877 47.826 24.41 3.08 0.00 3.46
859 1118 3.681594 GCAATATGACGTCAGGAAGGGAA 60.682 47.826 24.41 0.00 0.00 3.97
860 1119 2.158957 GCAATATGACGTCAGGAAGGGA 60.159 50.000 24.41 3.32 0.00 4.20
861 1120 2.213499 GCAATATGACGTCAGGAAGGG 58.787 52.381 24.41 11.65 0.00 3.95
862 1121 2.213499 GGCAATATGACGTCAGGAAGG 58.787 52.381 24.41 12.68 0.00 3.46
863 1122 1.860950 CGGCAATATGACGTCAGGAAG 59.139 52.381 24.41 14.36 45.41 3.46
864 1123 1.934589 CGGCAATATGACGTCAGGAA 58.065 50.000 24.41 12.14 45.41 3.36
865 1124 3.659850 CGGCAATATGACGTCAGGA 57.340 52.632 24.41 14.58 45.41 3.86
872 1131 2.110213 TCCGGCCGGCAATATGAC 59.890 61.111 39.89 7.76 34.68 3.06
873 1132 2.110213 GTCCGGCCGGCAATATGA 59.890 61.111 39.89 18.28 34.68 2.15
874 1133 2.203139 TGTCCGGCCGGCAATATG 60.203 61.111 39.89 14.64 34.68 1.78
875 1134 2.111043 CTGTCCGGCCGGCAATAT 59.889 61.111 39.89 0.00 34.68 1.28
876 1135 3.078196 TCTGTCCGGCCGGCAATA 61.078 61.111 39.89 24.73 34.68 1.90
877 1136 4.778143 GTCTGTCCGGCCGGCAAT 62.778 66.667 39.89 0.00 34.68 3.56
881 1140 3.723235 CTCATGTCTGTCCGGCCGG 62.723 68.421 39.13 39.13 0.00 6.13
882 1141 2.202797 CTCATGTCTGTCCGGCCG 60.203 66.667 21.04 21.04 0.00 6.13
883 1142 2.512515 GCTCATGTCTGTCCGGCC 60.513 66.667 0.00 0.00 0.00 6.13
884 1143 1.812922 CTGCTCATGTCTGTCCGGC 60.813 63.158 0.00 0.00 0.00 6.13
885 1144 1.812922 GCTGCTCATGTCTGTCCGG 60.813 63.158 0.00 0.00 0.00 5.14
886 1145 0.671472 TTGCTGCTCATGTCTGTCCG 60.671 55.000 0.00 0.00 0.00 4.79
887 1146 0.801251 GTTGCTGCTCATGTCTGTCC 59.199 55.000 0.00 0.00 0.00 4.02
888 1147 0.441533 CGTTGCTGCTCATGTCTGTC 59.558 55.000 0.00 0.00 0.00 3.51
889 1148 0.952497 CCGTTGCTGCTCATGTCTGT 60.952 55.000 0.00 0.00 0.00 3.41
890 1149 1.792301 CCGTTGCTGCTCATGTCTG 59.208 57.895 0.00 0.00 0.00 3.51
891 1150 2.037136 GCCGTTGCTGCTCATGTCT 61.037 57.895 0.00 0.00 33.53 3.41
892 1151 2.482374 GCCGTTGCTGCTCATGTC 59.518 61.111 0.00 0.00 33.53 3.06
893 1152 3.425713 CGCCGTTGCTGCTCATGT 61.426 61.111 0.00 0.00 34.43 3.21
894 1153 2.573341 CTTCGCCGTTGCTGCTCATG 62.573 60.000 0.00 0.00 34.43 3.07
895 1154 2.358615 TTCGCCGTTGCTGCTCAT 60.359 55.556 0.00 0.00 34.43 2.90
896 1155 3.043713 CTTCGCCGTTGCTGCTCA 61.044 61.111 0.00 0.00 34.43 4.26
897 1156 2.734673 CTCTTCGCCGTTGCTGCTC 61.735 63.158 0.00 0.00 34.43 4.26
898 1157 2.740055 CTCTTCGCCGTTGCTGCT 60.740 61.111 0.00 0.00 34.43 4.24
899 1158 4.451652 GCTCTTCGCCGTTGCTGC 62.452 66.667 0.00 0.00 34.43 5.25
900 1159 4.139420 CGCTCTTCGCCGTTGCTG 62.139 66.667 0.00 0.00 34.21 4.41
917 1176 4.467084 TCTCCATCGTTGCGGCCC 62.467 66.667 0.00 0.00 0.00 5.80
918 1177 2.892425 CTCTCCATCGTTGCGGCC 60.892 66.667 0.00 0.00 0.00 6.13
919 1178 2.892425 CCTCTCCATCGTTGCGGC 60.892 66.667 0.00 0.00 0.00 6.53
920 1179 2.892425 GCCTCTCCATCGTTGCGG 60.892 66.667 0.00 0.00 0.00 5.69
921 1180 2.892425 GGCCTCTCCATCGTTGCG 60.892 66.667 0.00 0.00 34.01 4.85
922 1181 2.268920 TGGCCTCTCCATCGTTGC 59.731 61.111 3.32 0.00 40.72 4.17
930 1189 2.123251 TCCTCCGATGGCCTCTCC 60.123 66.667 3.32 0.00 0.00 3.71
931 1190 2.866726 GCTCCTCCGATGGCCTCTC 61.867 68.421 3.32 0.00 0.00 3.20
932 1191 2.841988 GCTCCTCCGATGGCCTCT 60.842 66.667 3.32 0.00 0.00 3.69
933 1192 3.934962 GGCTCCTCCGATGGCCTC 61.935 72.222 3.32 0.00 41.20 4.70
934 1193 4.804420 TGGCTCCTCCGATGGCCT 62.804 66.667 3.32 0.00 44.36 5.19
935 1194 4.247380 CTGGCTCCTCCGATGGCC 62.247 72.222 0.00 0.00 44.31 5.36
936 1195 3.474570 ACTGGCTCCTCCGATGGC 61.475 66.667 0.00 0.00 37.80 4.40
937 1196 2.503061 CACTGGCTCCTCCGATGG 59.497 66.667 0.00 0.00 37.80 3.51
938 1197 2.362369 ACCACTGGCTCCTCCGATG 61.362 63.158 0.00 0.00 37.80 3.84
939 1198 2.039624 ACCACTGGCTCCTCCGAT 59.960 61.111 0.00 0.00 37.80 4.18
940 1199 2.997315 CACCACTGGCTCCTCCGA 60.997 66.667 0.00 0.00 37.80 4.55
941 1200 3.302347 GACACCACTGGCTCCTCCG 62.302 68.421 0.00 0.00 37.80 4.63
942 1201 2.665603 GACACCACTGGCTCCTCC 59.334 66.667 0.00 0.00 0.00 4.30
943 1202 2.262915 CGACACCACTGGCTCCTC 59.737 66.667 0.00 0.00 0.00 3.71
944 1203 3.314331 CCGACACCACTGGCTCCT 61.314 66.667 0.00 0.00 0.00 3.69
954 1213 4.778143 AATCTGGCCGCCGACACC 62.778 66.667 4.58 0.00 0.00 4.16
955 1214 3.195698 GAATCTGGCCGCCGACAC 61.196 66.667 4.58 0.36 0.00 3.67
956 1215 3.664025 CTGAATCTGGCCGCCGACA 62.664 63.158 4.58 0.00 0.00 4.35
957 1216 2.892425 CTGAATCTGGCCGCCGAC 60.892 66.667 4.58 0.00 0.00 4.79
958 1217 4.838152 GCTGAATCTGGCCGCCGA 62.838 66.667 4.58 5.67 0.00 5.54
960 1219 4.838152 TCGCTGAATCTGGCCGCC 62.838 66.667 1.04 1.04 0.00 6.13
961 1220 3.267860 CTCGCTGAATCTGGCCGC 61.268 66.667 0.00 0.00 0.00 6.53
962 1221 2.587194 CCTCGCTGAATCTGGCCG 60.587 66.667 0.00 0.00 0.00 6.13
963 1222 1.227497 CTCCTCGCTGAATCTGGCC 60.227 63.158 0.00 0.00 0.00 5.36
964 1223 1.886777 GCTCCTCGCTGAATCTGGC 60.887 63.158 0.00 0.00 35.14 4.85
965 1224 0.530211 CTGCTCCTCGCTGAATCTGG 60.530 60.000 0.00 0.00 39.69 3.86
966 1225 0.530211 CCTGCTCCTCGCTGAATCTG 60.530 60.000 0.00 0.00 39.69 2.90
967 1226 1.821936 CCTGCTCCTCGCTGAATCT 59.178 57.895 0.00 0.00 39.69 2.40
968 1227 1.886777 GCCTGCTCCTCGCTGAATC 60.887 63.158 0.00 0.00 39.69 2.52
969 1228 2.188994 GCCTGCTCCTCGCTGAAT 59.811 61.111 0.00 0.00 39.69 2.57
970 1229 2.999648 AGCCTGCTCCTCGCTGAA 61.000 61.111 0.00 0.00 39.69 3.02
975 1234 3.123620 GTTGCAGCCTGCTCCTCG 61.124 66.667 18.96 0.00 45.31 4.63
976 1235 3.123620 CGTTGCAGCCTGCTCCTC 61.124 66.667 18.96 4.77 45.31 3.71
977 1236 3.630013 TCGTTGCAGCCTGCTCCT 61.630 61.111 18.96 0.00 45.31 3.69
978 1237 3.426568 GTCGTTGCAGCCTGCTCC 61.427 66.667 18.96 7.16 45.31 4.70
979 1238 3.782244 CGTCGTTGCAGCCTGCTC 61.782 66.667 18.96 10.03 45.31 4.26
982 1241 2.842394 ATCTCCGTCGTTGCAGCCTG 62.842 60.000 0.00 0.00 0.00 4.85
983 1242 2.650116 ATCTCCGTCGTTGCAGCCT 61.650 57.895 0.00 0.00 0.00 4.58
984 1243 2.125512 ATCTCCGTCGTTGCAGCC 60.126 61.111 0.00 0.00 0.00 4.85
985 1244 3.084579 CATCTCCGTCGTTGCAGC 58.915 61.111 0.00 0.00 0.00 5.25
986 1245 2.456119 GGCATCTCCGTCGTTGCAG 61.456 63.158 8.35 0.00 36.82 4.41
987 1246 2.434185 GGCATCTCCGTCGTTGCA 60.434 61.111 8.35 0.00 36.82 4.08
988 1247 1.766143 GATGGCATCTCCGTCGTTGC 61.766 60.000 20.08 0.00 40.78 4.17
989 1248 2.301505 GATGGCATCTCCGTCGTTG 58.698 57.895 20.08 0.00 40.78 4.10
990 1249 4.835927 GATGGCATCTCCGTCGTT 57.164 55.556 20.08 0.00 40.78 3.85
993 1252 1.006805 CTCCGATGGCATCTCCGTC 60.007 63.158 23.97 0.00 45.53 4.79
994 1253 2.502492 CCTCCGATGGCATCTCCGT 61.502 63.158 23.97 0.00 37.80 4.69
995 1254 2.152297 CTCCTCCGATGGCATCTCCG 62.152 65.000 23.97 12.48 37.80 4.63
996 1255 1.670590 CTCCTCCGATGGCATCTCC 59.329 63.158 23.97 0.04 0.00 3.71
1030 1289 4.527583 CAGCGCCTCCTGCTCCTC 62.528 72.222 2.29 0.00 41.72 3.71
1168 1435 5.451520 GGGCACTGAAACGATATGTACTAGT 60.452 44.000 0.00 0.00 0.00 2.57
1175 1442 1.934589 TCGGGCACTGAAACGATATG 58.065 50.000 0.00 0.00 43.00 1.78
1201 1476 2.105128 GCTCGAGGGACGGATGTG 59.895 66.667 15.58 0.00 42.82 3.21
1202 1477 2.362503 TGCTCGAGGGACGGATGT 60.363 61.111 15.58 0.00 42.82 3.06
1213 1488 2.429571 GTAACCGCACGTGCTCGA 60.430 61.111 35.27 16.85 40.62 4.04
1220 1495 2.066262 AGTGAGAAATGTAACCGCACG 58.934 47.619 0.00 0.00 0.00 5.34
1222 1497 3.394674 TCAGTGAGAAATGTAACCGCA 57.605 42.857 0.00 0.00 0.00 5.69
1249 1524 8.458573 TGCATGAAACGATATATACCCTTTTT 57.541 30.769 0.00 0.00 0.00 1.94
1250 1525 8.514594 CATGCATGAAACGATATATACCCTTTT 58.485 33.333 22.59 0.00 0.00 2.27
1251 1526 7.362056 GCATGCATGAAACGATATATACCCTTT 60.362 37.037 30.64 0.00 0.00 3.11
1252 1527 6.094048 GCATGCATGAAACGATATATACCCTT 59.906 38.462 30.64 0.00 0.00 3.95
1253 1528 5.586243 GCATGCATGAAACGATATATACCCT 59.414 40.000 30.64 0.00 0.00 4.34
1254 1529 5.586243 AGCATGCATGAAACGATATATACCC 59.414 40.000 30.64 6.30 0.00 3.69
1255 1530 6.668541 AGCATGCATGAAACGATATATACC 57.331 37.500 30.64 6.96 0.00 2.73
1258 1533 9.964303 TTTTTAAGCATGCATGAAACGATATAT 57.036 25.926 30.64 5.32 0.00 0.86
1290 1565 9.622004 CTGAGACATAACGAAGTACTTAGAAAA 57.378 33.333 20.84 7.18 45.00 2.29
1292 1567 8.235226 CACTGAGACATAACGAAGTACTTAGAA 58.765 37.037 20.84 9.69 45.00 2.10
1295 1570 6.656270 TCCACTGAGACATAACGAAGTACTTA 59.344 38.462 8.42 0.00 45.00 2.24
1296 1571 5.475909 TCCACTGAGACATAACGAAGTACTT 59.524 40.000 8.13 8.13 45.00 2.24
1297 1572 5.008331 TCCACTGAGACATAACGAAGTACT 58.992 41.667 0.00 0.00 45.00 2.73
1298 1573 5.306532 TCCACTGAGACATAACGAAGTAC 57.693 43.478 0.00 0.00 45.00 2.73
1301 1576 3.553511 GCATCCACTGAGACATAACGAAG 59.446 47.826 0.00 0.00 0.00 3.79
1303 1578 2.760650 AGCATCCACTGAGACATAACGA 59.239 45.455 0.00 0.00 0.00 3.85
1304 1579 3.170791 AGCATCCACTGAGACATAACG 57.829 47.619 0.00 0.00 0.00 3.18
1306 1581 8.427902 AGAATATAGCATCCACTGAGACATAA 57.572 34.615 0.00 0.00 0.00 1.90
1307 1582 8.427902 AAGAATATAGCATCCACTGAGACATA 57.572 34.615 0.00 0.00 0.00 2.29
1308 1583 6.931790 AGAATATAGCATCCACTGAGACAT 57.068 37.500 0.00 0.00 0.00 3.06
1309 1584 6.737720 AAGAATATAGCATCCACTGAGACA 57.262 37.500 0.00 0.00 0.00 3.41
1310 1585 7.712639 TCAAAAGAATATAGCATCCACTGAGAC 59.287 37.037 0.00 0.00 0.00 3.36
1311 1586 7.795047 TCAAAAGAATATAGCATCCACTGAGA 58.205 34.615 0.00 0.00 0.00 3.27
1312 1587 8.618702 ATCAAAAGAATATAGCATCCACTGAG 57.381 34.615 0.00 0.00 0.00 3.35
1313 1588 8.985315 AATCAAAAGAATATAGCATCCACTGA 57.015 30.769 0.00 0.00 0.00 3.41
1314 1589 9.459640 CAAATCAAAAGAATATAGCATCCACTG 57.540 33.333 0.00 0.00 0.00 3.66
1315 1590 8.139989 GCAAATCAAAAGAATATAGCATCCACT 58.860 33.333 0.00 0.00 0.00 4.00
1316 1591 7.922278 TGCAAATCAAAAGAATATAGCATCCAC 59.078 33.333 0.00 0.00 0.00 4.02
1317 1592 8.009622 TGCAAATCAAAAGAATATAGCATCCA 57.990 30.769 0.00 0.00 0.00 3.41
1318 1593 8.922676 CATGCAAATCAAAAGAATATAGCATCC 58.077 33.333 0.00 0.00 36.92 3.51
1319 1594 8.922676 CCATGCAAATCAAAAGAATATAGCATC 58.077 33.333 0.00 0.00 36.92 3.91
1320 1595 8.644216 TCCATGCAAATCAAAAGAATATAGCAT 58.356 29.630 0.00 0.00 39.31 3.79
1321 1596 8.009622 TCCATGCAAATCAAAAGAATATAGCA 57.990 30.769 0.00 0.00 0.00 3.49
1322 1597 8.355169 TCTCCATGCAAATCAAAAGAATATAGC 58.645 33.333 0.00 0.00 0.00 2.97
1325 1600 9.760077 GAATCTCCATGCAAATCAAAAGAATAT 57.240 29.630 0.00 0.00 0.00 1.28
1326 1601 7.916977 CGAATCTCCATGCAAATCAAAAGAATA 59.083 33.333 0.00 0.00 0.00 1.75
1327 1602 6.755141 CGAATCTCCATGCAAATCAAAAGAAT 59.245 34.615 0.00 0.00 0.00 2.40
1328 1603 6.094719 CGAATCTCCATGCAAATCAAAAGAA 58.905 36.000 0.00 0.00 0.00 2.52
1329 1604 5.183713 ACGAATCTCCATGCAAATCAAAAGA 59.816 36.000 0.00 0.00 0.00 2.52
1330 1605 5.404946 ACGAATCTCCATGCAAATCAAAAG 58.595 37.500 0.00 0.00 0.00 2.27
1331 1606 5.389859 ACGAATCTCCATGCAAATCAAAA 57.610 34.783 0.00 0.00 0.00 2.44
1332 1607 5.414144 TGTACGAATCTCCATGCAAATCAAA 59.586 36.000 0.00 0.00 0.00 2.69
1333 1608 4.940654 TGTACGAATCTCCATGCAAATCAA 59.059 37.500 0.00 0.00 0.00 2.57
1334 1609 4.512484 TGTACGAATCTCCATGCAAATCA 58.488 39.130 0.00 0.00 0.00 2.57
1335 1610 5.484173 TTGTACGAATCTCCATGCAAATC 57.516 39.130 0.00 0.00 0.00 2.17
1336 1611 5.895636 TTTGTACGAATCTCCATGCAAAT 57.104 34.783 0.00 0.00 0.00 2.32
1337 1612 5.697473 TTTTGTACGAATCTCCATGCAAA 57.303 34.783 0.00 0.00 0.00 3.68
1338 1613 5.895636 ATTTTGTACGAATCTCCATGCAA 57.104 34.783 0.00 0.00 0.00 4.08
1339 1614 6.993786 TTATTTTGTACGAATCTCCATGCA 57.006 33.333 0.00 0.00 0.00 3.96
1340 1615 8.345565 AGAATTATTTTGTACGAATCTCCATGC 58.654 33.333 0.00 0.00 0.00 4.06
1393 1668 9.613428 TCGAACCAAGTCTCAATTAAATGATAT 57.387 29.630 0.00 0.00 0.00 1.63
1394 1669 8.879759 GTCGAACCAAGTCTCAATTAAATGATA 58.120 33.333 0.00 0.00 0.00 2.15
1395 1670 7.607991 AGTCGAACCAAGTCTCAATTAAATGAT 59.392 33.333 0.00 0.00 0.00 2.45
1396 1671 6.934645 AGTCGAACCAAGTCTCAATTAAATGA 59.065 34.615 0.00 0.00 0.00 2.57
1397 1672 7.017645 CAGTCGAACCAAGTCTCAATTAAATG 58.982 38.462 0.00 0.00 0.00 2.32
1398 1673 6.934645 TCAGTCGAACCAAGTCTCAATTAAAT 59.065 34.615 0.00 0.00 0.00 1.40
1399 1674 6.285224 TCAGTCGAACCAAGTCTCAATTAAA 58.715 36.000 0.00 0.00 0.00 1.52
1400 1675 5.849510 TCAGTCGAACCAAGTCTCAATTAA 58.150 37.500 0.00 0.00 0.00 1.40
1401 1676 5.243060 TCTCAGTCGAACCAAGTCTCAATTA 59.757 40.000 0.00 0.00 0.00 1.40
1402 1677 4.039245 TCTCAGTCGAACCAAGTCTCAATT 59.961 41.667 0.00 0.00 0.00 2.32
1403 1678 3.574396 TCTCAGTCGAACCAAGTCTCAAT 59.426 43.478 0.00 0.00 0.00 2.57
1404 1679 2.956333 TCTCAGTCGAACCAAGTCTCAA 59.044 45.455 0.00 0.00 0.00 3.02
1405 1680 2.293677 GTCTCAGTCGAACCAAGTCTCA 59.706 50.000 0.00 0.00 0.00 3.27
1406 1681 2.293677 TGTCTCAGTCGAACCAAGTCTC 59.706 50.000 0.00 0.00 0.00 3.36
1407 1682 2.034812 GTGTCTCAGTCGAACCAAGTCT 59.965 50.000 0.00 0.00 0.00 3.24
1408 1683 2.395654 GTGTCTCAGTCGAACCAAGTC 58.604 52.381 0.00 0.00 0.00 3.01
1409 1684 1.068741 GGTGTCTCAGTCGAACCAAGT 59.931 52.381 0.00 0.00 0.00 3.16
1410 1685 1.605712 GGGTGTCTCAGTCGAACCAAG 60.606 57.143 2.83 0.00 32.28 3.61
1411 1686 0.391597 GGGTGTCTCAGTCGAACCAA 59.608 55.000 2.83 0.00 32.28 3.67
1412 1687 0.469331 AGGGTGTCTCAGTCGAACCA 60.469 55.000 2.83 0.00 32.28 3.67
1413 1688 1.542492 TAGGGTGTCTCAGTCGAACC 58.458 55.000 0.00 0.00 0.00 3.62
1414 1689 3.005578 ACTTTAGGGTGTCTCAGTCGAAC 59.994 47.826 0.00 0.00 0.00 3.95
1415 1690 3.228453 ACTTTAGGGTGTCTCAGTCGAA 58.772 45.455 0.00 0.00 0.00 3.71
1416 1691 2.872732 ACTTTAGGGTGTCTCAGTCGA 58.127 47.619 0.00 0.00 0.00 4.20
1417 1692 4.778534 TTACTTTAGGGTGTCTCAGTCG 57.221 45.455 0.00 0.00 0.00 4.18
1418 1693 6.342338 TCTTTACTTTAGGGTGTCTCAGTC 57.658 41.667 0.00 0.00 0.00 3.51
1419 1694 6.742559 TTCTTTACTTTAGGGTGTCTCAGT 57.257 37.500 0.00 0.00 0.00 3.41
1420 1695 8.343366 GTTTTTCTTTACTTTAGGGTGTCTCAG 58.657 37.037 0.00 0.00 0.00 3.35
1421 1696 7.830201 TGTTTTTCTTTACTTTAGGGTGTCTCA 59.170 33.333 0.00 0.00 0.00 3.27
1422 1697 8.217131 TGTTTTTCTTTACTTTAGGGTGTCTC 57.783 34.615 0.00 0.00 0.00 3.36
1423 1698 8.630037 CATGTTTTTCTTTACTTTAGGGTGTCT 58.370 33.333 0.00 0.00 0.00 3.41
1424 1699 8.410912 ACATGTTTTTCTTTACTTTAGGGTGTC 58.589 33.333 0.00 0.00 0.00 3.67
1425 1700 8.301252 ACATGTTTTTCTTTACTTTAGGGTGT 57.699 30.769 0.00 0.00 0.00 4.16
1426 1701 9.673454 GTACATGTTTTTCTTTACTTTAGGGTG 57.327 33.333 2.30 0.00 0.00 4.61
1427 1702 9.411189 TGTACATGTTTTTCTTTACTTTAGGGT 57.589 29.630 2.30 0.00 0.00 4.34
1428 1703 9.893305 CTGTACATGTTTTTCTTTACTTTAGGG 57.107 33.333 2.30 0.00 0.00 3.53
1432 1707 7.642586 GCGTCTGTACATGTTTTTCTTTACTTT 59.357 33.333 2.30 0.00 0.00 2.66
1433 1708 7.130269 GCGTCTGTACATGTTTTTCTTTACTT 58.870 34.615 2.30 0.00 0.00 2.24
1434 1709 6.259167 TGCGTCTGTACATGTTTTTCTTTACT 59.741 34.615 2.30 0.00 0.00 2.24
1435 1710 6.356190 GTGCGTCTGTACATGTTTTTCTTTAC 59.644 38.462 2.30 0.00 0.00 2.01
1436 1711 6.259167 AGTGCGTCTGTACATGTTTTTCTTTA 59.741 34.615 2.30 0.00 32.48 1.85
1437 1712 5.065988 AGTGCGTCTGTACATGTTTTTCTTT 59.934 36.000 2.30 0.00 32.48 2.52
1438 1713 4.574828 AGTGCGTCTGTACATGTTTTTCTT 59.425 37.500 2.30 0.00 32.48 2.52
1439 1714 4.024893 CAGTGCGTCTGTACATGTTTTTCT 60.025 41.667 2.30 0.00 39.17 2.52
1440 1715 4.211389 CAGTGCGTCTGTACATGTTTTTC 58.789 43.478 2.30 0.00 39.17 2.29
1441 1716 4.209452 CAGTGCGTCTGTACATGTTTTT 57.791 40.909 2.30 0.00 39.17 1.94
1442 1717 3.878086 CAGTGCGTCTGTACATGTTTT 57.122 42.857 2.30 0.00 39.17 2.43
1479 1754 7.510549 TTGAACAAAGTTATTTCTCCCTCTG 57.489 36.000 0.00 0.00 0.00 3.35
1483 1758 6.368791 GCCAATTGAACAAAGTTATTTCTCCC 59.631 38.462 7.12 0.00 0.00 4.30
1494 1769 1.068434 ACGTGGGCCAATTGAACAAAG 59.932 47.619 8.40 0.00 0.00 2.77
1504 1779 0.539986 GGAGATTCTACGTGGGCCAA 59.460 55.000 8.40 0.00 0.00 4.52
1528 1803 5.208294 TCTTCCACTACTGGTATCCTTCT 57.792 43.478 0.00 0.00 38.90 2.85
1537 1812 4.213482 CGTTTTCCTTTCTTCCACTACTGG 59.787 45.833 0.00 0.00 39.23 4.00
1582 1857 1.939838 GCCGATCTTCCACGTCTTTGT 60.940 52.381 0.00 0.00 0.00 2.83
1586 1861 1.541310 TTGGCCGATCTTCCACGTCT 61.541 55.000 0.00 0.00 30.97 4.18
1615 1891 1.004927 CAAAAGCCAGCTACGATACGC 60.005 52.381 0.00 0.00 0.00 4.42
1762 2049 2.161030 AGAGGTACGAGTTCTGGTGAC 58.839 52.381 0.00 0.00 0.00 3.67
1766 2053 3.374678 GTGTCTAGAGGTACGAGTTCTGG 59.625 52.174 0.00 0.00 0.00 3.86
1815 2102 3.430895 TCCGCGTGTTTTCTTAATCTGTC 59.569 43.478 4.92 0.00 0.00 3.51
1827 2114 2.357517 CTCTGCCTCCGCGTGTTT 60.358 61.111 4.92 0.00 38.08 2.83
1990 2278 2.282555 GTGAATGACGATCGGACACATG 59.717 50.000 20.98 0.00 0.00 3.21
1991 2279 2.540515 GTGAATGACGATCGGACACAT 58.459 47.619 20.98 15.18 0.00 3.21
1992 2280 1.403647 GGTGAATGACGATCGGACACA 60.404 52.381 20.98 13.62 0.00 3.72
1993 2281 1.278238 GGTGAATGACGATCGGACAC 58.722 55.000 20.98 18.59 0.00 3.67
1994 2282 0.179148 CGGTGAATGACGATCGGACA 60.179 55.000 20.98 18.55 0.00 4.02
2000 2288 0.611200 TTGGTCCGGTGAATGACGAT 59.389 50.000 0.00 0.00 32.19 3.73
2003 2291 3.181514 CGTTAATTGGTCCGGTGAATGAC 60.182 47.826 0.00 0.00 0.00 3.06
2012 2300 0.179174 GCAAGGCGTTAATTGGTCCG 60.179 55.000 0.00 0.00 0.00 4.79
2464 2774 3.595173 GGTACAGCACACACATGACATA 58.405 45.455 0.00 0.00 0.00 2.29
2465 2775 2.426522 GGTACAGCACACACATGACAT 58.573 47.619 0.00 0.00 0.00 3.06
2490 2810 1.060937 CTTGTCGTTATGGCAGCGC 59.939 57.895 0.00 0.00 0.00 5.92
2586 2908 5.353394 ACCGTCTATTGGAAATGCTCTTA 57.647 39.130 0.00 0.00 0.00 2.10
2587 2909 4.222124 ACCGTCTATTGGAAATGCTCTT 57.778 40.909 0.00 0.00 0.00 2.85
2588 2910 3.914426 ACCGTCTATTGGAAATGCTCT 57.086 42.857 0.00 0.00 0.00 4.09
2589 2911 4.439057 TGTACCGTCTATTGGAAATGCTC 58.561 43.478 0.00 0.00 0.00 4.26
2590 2912 4.481368 TGTACCGTCTATTGGAAATGCT 57.519 40.909 0.00 0.00 0.00 3.79
2591 2913 5.554822 TTTGTACCGTCTATTGGAAATGC 57.445 39.130 0.00 0.00 0.00 3.56
2592 2914 7.083875 ACATTTGTACCGTCTATTGGAAATG 57.916 36.000 0.00 0.00 35.73 2.32
2593 2915 8.795842 TTACATTTGTACCGTCTATTGGAAAT 57.204 30.769 0.00 0.00 0.00 2.17
2594 2916 8.618702 TTTACATTTGTACCGTCTATTGGAAA 57.381 30.769 0.00 0.00 0.00 3.13
2595 2917 8.618702 TTTTACATTTGTACCGTCTATTGGAA 57.381 30.769 0.00 0.00 0.00 3.53
2596 2918 8.618702 TTTTTACATTTGTACCGTCTATTGGA 57.381 30.769 0.00 0.00 0.00 3.53
2613 2935 9.902196 CGGTTCAAAGGTTAAGTATTTTTACAT 57.098 29.630 0.00 0.00 0.00 2.29
2614 2936 8.901793 ACGGTTCAAAGGTTAAGTATTTTTACA 58.098 29.630 0.00 0.00 0.00 2.41
2615 2937 9.385902 GACGGTTCAAAGGTTAAGTATTTTTAC 57.614 33.333 0.00 0.00 0.00 2.01
2616 2938 9.341078 AGACGGTTCAAAGGTTAAGTATTTTTA 57.659 29.630 0.00 0.00 0.00 1.52
2617 2939 8.229253 AGACGGTTCAAAGGTTAAGTATTTTT 57.771 30.769 0.00 0.00 0.00 1.94
2618 2940 7.307573 CGAGACGGTTCAAAGGTTAAGTATTTT 60.308 37.037 0.00 0.00 0.00 1.82
2619 2941 6.146673 CGAGACGGTTCAAAGGTTAAGTATTT 59.853 38.462 0.00 0.00 0.00 1.40
2620 2942 5.636543 CGAGACGGTTCAAAGGTTAAGTATT 59.363 40.000 0.00 0.00 0.00 1.89
2621 2943 5.166398 CGAGACGGTTCAAAGGTTAAGTAT 58.834 41.667 0.00 0.00 0.00 2.12
2622 2944 4.549458 CGAGACGGTTCAAAGGTTAAGTA 58.451 43.478 0.00 0.00 0.00 2.24
2623 2945 3.387397 CGAGACGGTTCAAAGGTTAAGT 58.613 45.455 0.00 0.00 0.00 2.24
2624 2946 2.735134 CCGAGACGGTTCAAAGGTTAAG 59.265 50.000 1.80 0.00 42.73 1.85
2625 2947 2.548493 CCCGAGACGGTTCAAAGGTTAA 60.548 50.000 9.28 0.00 46.80 2.01
2626 2948 1.001181 CCCGAGACGGTTCAAAGGTTA 59.999 52.381 9.28 0.00 46.80 2.85
2627 2949 0.250166 CCCGAGACGGTTCAAAGGTT 60.250 55.000 9.28 0.00 46.80 3.50
2628 2950 1.370064 CCCGAGACGGTTCAAAGGT 59.630 57.895 9.28 0.00 46.80 3.50
2629 2951 2.033194 GCCCGAGACGGTTCAAAGG 61.033 63.158 9.28 0.00 46.80 3.11
2630 2952 0.882927 TTGCCCGAGACGGTTCAAAG 60.883 55.000 9.28 0.00 46.80 2.77
2631 2953 0.464013 TTTGCCCGAGACGGTTCAAA 60.464 50.000 17.00 17.00 46.80 2.69
2632 2954 0.464013 TTTTGCCCGAGACGGTTCAA 60.464 50.000 9.28 9.49 46.80 2.69
2633 2955 0.464013 TTTTTGCCCGAGACGGTTCA 60.464 50.000 9.28 4.24 46.80 3.18
2634 2956 2.323213 TTTTTGCCCGAGACGGTTC 58.677 52.632 9.28 1.81 46.80 3.62
2635 2957 4.563404 TTTTTGCCCGAGACGGTT 57.437 50.000 9.28 0.00 46.80 4.44
2649 2971 1.388547 TCTGTTGGAGCAGCGTTTTT 58.611 45.000 0.00 0.00 36.49 1.94
2650 2972 1.334869 CTTCTGTTGGAGCAGCGTTTT 59.665 47.619 0.00 0.00 36.49 2.43
2651 2973 0.947244 CTTCTGTTGGAGCAGCGTTT 59.053 50.000 0.00 0.00 36.49 3.60
2652 2974 0.886490 CCTTCTGTTGGAGCAGCGTT 60.886 55.000 0.00 0.00 36.49 4.84
2653 2975 1.302033 CCTTCTGTTGGAGCAGCGT 60.302 57.895 0.00 0.00 36.49 5.07
2654 2976 1.294659 GACCTTCTGTTGGAGCAGCG 61.295 60.000 0.00 0.00 36.49 5.18
2655 2977 0.957888 GGACCTTCTGTTGGAGCAGC 60.958 60.000 0.00 0.00 36.49 5.25
2656 2978 0.397941 TGGACCTTCTGTTGGAGCAG 59.602 55.000 0.00 0.00 37.81 4.24
2657 2979 1.067295 ATGGACCTTCTGTTGGAGCA 58.933 50.000 0.00 0.00 0.00 4.26
2658 2980 3.209410 CATATGGACCTTCTGTTGGAGC 58.791 50.000 0.00 0.00 0.00 4.70
2659 2981 4.494091 ACATATGGACCTTCTGTTGGAG 57.506 45.455 7.80 0.00 0.00 3.86
2660 2982 6.381498 TTTACATATGGACCTTCTGTTGGA 57.619 37.500 7.80 0.00 0.00 3.53
2661 2983 7.393234 TCTTTTTACATATGGACCTTCTGTTGG 59.607 37.037 7.80 0.00 0.00 3.77
2662 2984 8.335532 TCTTTTTACATATGGACCTTCTGTTG 57.664 34.615 7.80 0.00 0.00 3.33
2663 2985 8.934023 TTCTTTTTACATATGGACCTTCTGTT 57.066 30.769 7.80 0.00 0.00 3.16
2664 2986 9.533831 AATTCTTTTTACATATGGACCTTCTGT 57.466 29.630 7.80 4.18 0.00 3.41
2669 2991 9.628500 GGTCTAATTCTTTTTACATATGGACCT 57.372 33.333 7.80 0.00 35.52 3.85
2670 2992 8.557029 CGGTCTAATTCTTTTTACATATGGACC 58.443 37.037 7.80 8.03 35.19 4.46
2671 2993 8.068380 GCGGTCTAATTCTTTTTACATATGGAC 58.932 37.037 7.80 0.00 0.00 4.02
2672 2994 7.771361 TGCGGTCTAATTCTTTTTACATATGGA 59.229 33.333 7.80 0.00 0.00 3.41
2673 2995 7.925993 TGCGGTCTAATTCTTTTTACATATGG 58.074 34.615 7.80 0.00 0.00 2.74
2674 2996 7.587757 GCTGCGGTCTAATTCTTTTTACATATG 59.412 37.037 0.00 0.00 0.00 1.78
2675 2997 7.255139 GGCTGCGGTCTAATTCTTTTTACATAT 60.255 37.037 0.00 0.00 0.00 1.78
2676 2998 6.037830 GGCTGCGGTCTAATTCTTTTTACATA 59.962 38.462 0.00 0.00 0.00 2.29
2677 2999 5.163652 GGCTGCGGTCTAATTCTTTTTACAT 60.164 40.000 0.00 0.00 0.00 2.29
2678 3000 4.155280 GGCTGCGGTCTAATTCTTTTTACA 59.845 41.667 0.00 0.00 0.00 2.41
2679 3001 4.395231 AGGCTGCGGTCTAATTCTTTTTAC 59.605 41.667 0.00 0.00 0.00 2.01
2680 3002 4.585879 AGGCTGCGGTCTAATTCTTTTTA 58.414 39.130 0.00 0.00 0.00 1.52
2681 3003 3.421844 AGGCTGCGGTCTAATTCTTTTT 58.578 40.909 0.00 0.00 0.00 1.94
2682 3004 3.010420 GAGGCTGCGGTCTAATTCTTTT 58.990 45.455 0.00 0.00 0.00 2.27
2683 3005 2.633488 GAGGCTGCGGTCTAATTCTTT 58.367 47.619 0.00 0.00 0.00 2.52
2684 3006 1.134371 GGAGGCTGCGGTCTAATTCTT 60.134 52.381 0.00 0.00 0.00 2.52
2685 3007 0.466124 GGAGGCTGCGGTCTAATTCT 59.534 55.000 0.00 0.00 0.00 2.40
2686 3008 0.466124 AGGAGGCTGCGGTCTAATTC 59.534 55.000 0.00 0.00 0.00 2.17
2687 3009 0.466124 GAGGAGGCTGCGGTCTAATT 59.534 55.000 0.00 0.00 0.00 1.40
2688 3010 1.739338 CGAGGAGGCTGCGGTCTAAT 61.739 60.000 0.00 0.00 0.00 1.73
2689 3011 2.415608 CGAGGAGGCTGCGGTCTAA 61.416 63.158 0.00 0.00 0.00 2.10
2690 3012 2.829003 CGAGGAGGCTGCGGTCTA 60.829 66.667 0.00 0.00 0.00 2.59
2692 3014 4.803426 CACGAGGAGGCTGCGGTC 62.803 72.222 0.00 0.00 0.00 4.79
2694 3016 4.379243 AACACGAGGAGGCTGCGG 62.379 66.667 0.00 0.00 0.00 5.69
2695 3017 2.811317 GAACACGAGGAGGCTGCG 60.811 66.667 0.00 0.00 0.00 5.18
2696 3018 1.078848 ATGAACACGAGGAGGCTGC 60.079 57.895 0.00 0.00 0.00 5.25
2697 3019 0.803768 CGATGAACACGAGGAGGCTG 60.804 60.000 0.00 0.00 0.00 4.85
2698 3020 1.513158 CGATGAACACGAGGAGGCT 59.487 57.895 0.00 0.00 0.00 4.58
2699 3021 1.519455 CCGATGAACACGAGGAGGC 60.519 63.158 0.00 0.00 0.00 4.70
2700 3022 0.101399 CTCCGATGAACACGAGGAGG 59.899 60.000 11.47 0.00 43.42 4.30
2701 3023 3.631714 CTCCGATGAACACGAGGAG 57.368 57.895 0.00 0.00 41.91 3.69
2702 3024 1.248101 TGCTCCGATGAACACGAGGA 61.248 55.000 0.00 0.00 0.00 3.71
2703 3025 1.078759 GTGCTCCGATGAACACGAGG 61.079 60.000 0.00 0.00 28.74 4.63
2704 3026 0.388520 TGTGCTCCGATGAACACGAG 60.389 55.000 0.00 0.00 39.85 4.18
2778 3100 0.893447 AAGCCTAAACTACCTCGCGT 59.107 50.000 5.77 0.00 0.00 6.01
2784 3106 5.354513 GTCAGATTTGGAAGCCTAAACTACC 59.645 44.000 0.00 0.00 0.00 3.18
2975 3297 3.057946 GTGCTTTCATTGAGAGTTCCACC 60.058 47.826 6.13 0.00 0.00 4.61
3018 3340 2.519441 CCCCTACCCGAGATCCGA 59.481 66.667 5.32 0.00 41.76 4.55
3141 3463 7.578310 AACACCCATATTCATCAAGATCAAG 57.422 36.000 0.00 0.00 0.00 3.02
3182 3505 3.734735 GGTTTAGCCATTACGATCTCGTC 59.265 47.826 8.74 0.00 44.05 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.