Multiple sequence alignment - TraesCS1D01G340300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G340300 chr1D 100.000 3038 0 0 1 3038 430325396 430322359 0.000000e+00 5611.0
1 TraesCS1D01G340300 chr1D 76.744 387 74 10 2272 2644 57921496 57921880 5.140000e-48 202.0
2 TraesCS1D01G340300 chr1B 90.182 2139 119 46 116 2198 581165094 581162991 0.000000e+00 2702.0
3 TraesCS1D01G340300 chr1B 87.719 228 9 3 2830 3038 581117186 581116959 6.500000e-62 248.0
4 TraesCS1D01G340300 chr1B 89.474 133 13 1 1 133 581166681 581166550 1.870000e-37 167.0
5 TraesCS1D01G340300 chr1A 92.589 1889 82 23 278 2137 527892007 527890148 0.000000e+00 2660.0
6 TraesCS1D01G340300 chr1A 84.419 353 20 13 2709 3038 527886345 527886005 6.320000e-82 315.0
7 TraesCS1D01G340300 chr1A 90.541 222 11 2 1 217 527892288 527892072 4.960000e-73 285.0
8 TraesCS1D01G340300 chr1A 88.298 188 17 3 2136 2323 527886914 527886732 1.420000e-53 220.0
9 TraesCS1D01G340300 chr1A 88.235 187 18 2 2137 2323 527887656 527887474 1.420000e-53 220.0
10 TraesCS1D01G340300 chr1A 76.980 404 75 11 2257 2644 56859699 56860100 6.600000e-52 215.0
11 TraesCS1D01G340300 chr1A 73.089 327 66 13 2340 2654 495135874 495135558 2.490000e-16 97.1
12 TraesCS1D01G340300 chr6A 76.000 300 59 9 2354 2644 98975859 98976154 3.160000e-30 143.0
13 TraesCS1D01G340300 chr2D 75.796 314 58 11 2341 2644 395305886 395305581 3.160000e-30 143.0
14 TraesCS1D01G340300 chr2A 78.049 164 29 5 2359 2521 3442115 3441958 2.490000e-16 97.1
15 TraesCS1D01G340300 chr4B 100.000 28 0 0 2490 2517 538708606 538708633 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G340300 chr1D 430322359 430325396 3037 True 5611.0 5611 100.0000 1 3038 1 chr1D.!!$R1 3037
1 TraesCS1D01G340300 chr1B 581162991 581166681 3690 True 1434.5 2702 89.8280 1 2198 2 chr1B.!!$R2 2197
2 TraesCS1D01G340300 chr1A 527886005 527892288 6283 True 740.0 2660 88.8164 1 3038 5 chr1A.!!$R2 3037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 2040 0.040067 AAGCAAAAGCAGCACGTAGC 60.04 50.0 0.0 0.0 46.19 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 7259 0.166814 GCATGTGCACGAAGACTTCC 59.833 55.0 13.13 0.0 41.59 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.253392 AAACTACTCGCCTACGTTCG 57.747 50.000 0.00 0.00 41.18 3.95
90 96 6.183324 GCCTACGTTCGCTTTCTTTAATTAG 58.817 40.000 0.00 0.00 0.00 1.73
161 1645 3.246936 GGGAAAAGTACAGTGTCGTGTTC 59.753 47.826 0.00 0.00 31.46 3.18
178 1662 3.312697 GTGTTCTTCCTGTGGAAAGTGTC 59.687 47.826 0.53 0.00 41.54 3.67
262 1753 2.426738 GGGCACAAGCATAATACAGCAA 59.573 45.455 0.00 0.00 44.61 3.91
263 1754 3.438360 GGCACAAGCATAATACAGCAAC 58.562 45.455 0.00 0.00 44.61 4.17
329 1844 6.745116 TCGAGTCTGAACTTCTTTTACATGA 58.255 36.000 0.00 0.00 35.28 3.07
386 1918 4.278310 AGTAGCAAAAGTTTGTTCCTGGT 58.722 39.130 5.71 0.00 40.24 4.00
443 1975 3.172824 GCCTTTTGTTCAAACGAACGAA 58.827 40.909 0.14 4.29 44.82 3.85
444 1976 3.001464 GCCTTTTGTTCAAACGAACGAAC 60.001 43.478 7.37 0.00 43.40 3.95
445 1977 3.236528 CCTTTTGTTCAAACGAACGAACG 59.763 43.478 7.37 6.26 43.40 3.95
446 1978 3.719083 TTTGTTCAAACGAACGAACGA 57.281 38.095 11.97 0.00 44.82 3.85
455 1987 1.269166 CGAACGAACGATGGGAGAAG 58.731 55.000 0.14 0.00 35.09 2.85
506 2039 2.031682 AGAAAGCAAAAGCAGCACGTAG 60.032 45.455 0.00 0.00 0.00 3.51
507 2040 0.040067 AAGCAAAAGCAGCACGTAGC 60.040 50.000 0.00 0.00 46.19 3.58
521 2054 1.210155 GTAGCAAGCCAAGCCAACG 59.790 57.895 0.00 0.00 0.00 4.10
578 2111 1.270907 TCTCCTCTGCTTTGTCTCCC 58.729 55.000 0.00 0.00 0.00 4.30
606 2139 2.573869 CCTCTGCTCTTCCGCGAA 59.426 61.111 8.23 0.00 0.00 4.70
607 2140 1.142748 CCTCTGCTCTTCCGCGAAT 59.857 57.895 8.23 0.00 0.00 3.34
608 2141 0.385751 CCTCTGCTCTTCCGCGAATA 59.614 55.000 8.23 0.00 0.00 1.75
609 2142 1.601663 CCTCTGCTCTTCCGCGAATAG 60.602 57.143 8.23 1.08 0.00 1.73
610 2143 1.066303 CTCTGCTCTTCCGCGAATAGT 59.934 52.381 8.23 0.00 0.00 2.12
630 2163 8.948631 AATAGTATTGACGAATCATGAGTGTT 57.051 30.769 0.00 0.00 33.85 3.32
747 2284 2.744202 CAGATGGACATAATTAGCGCCC 59.256 50.000 2.29 0.00 0.00 6.13
810 2347 0.729690 GCTGTCTCGCTTTCCATTCC 59.270 55.000 0.00 0.00 0.00 3.01
884 2442 4.154918 GCTCAAGTAGTGCATAAAGCTTGT 59.845 41.667 0.00 0.00 45.94 3.16
911 2469 1.003839 CCCAGTAGCGGCAACAAGA 60.004 57.895 1.45 0.00 0.00 3.02
928 2486 3.243068 ACAAGAACTTGCACGCTTTAAGG 60.243 43.478 13.50 0.00 44.03 2.69
937 2495 1.814169 CGCTTTAAGGTCGCCCCTC 60.814 63.158 0.00 0.00 45.47 4.30
954 2534 0.315251 CTCCAAGCTCACACACGAGA 59.685 55.000 0.00 0.00 34.79 4.04
975 2555 1.085091 GCTCGAGTCGGAGTTGTAGA 58.915 55.000 15.13 0.00 36.41 2.59
980 2560 2.612672 CGAGTCGGAGTTGTAGATAGCA 59.387 50.000 4.10 0.00 0.00 3.49
1061 2641 4.116328 CGCGTCGGAGCAAGGAGA 62.116 66.667 0.00 0.00 36.85 3.71
1062 2642 2.202676 GCGTCGGAGCAAGGAGAG 60.203 66.667 0.00 0.00 37.05 3.20
1063 2643 2.995872 GCGTCGGAGCAAGGAGAGT 61.996 63.158 0.00 0.00 37.05 3.24
1064 2644 1.137825 CGTCGGAGCAAGGAGAGTC 59.862 63.158 0.00 0.00 0.00 3.36
1065 2645 1.513622 GTCGGAGCAAGGAGAGTCC 59.486 63.158 0.00 0.00 36.58 3.85
1066 2646 2.492090 CGGAGCAAGGAGAGTCCG 59.508 66.667 0.00 0.00 45.48 4.79
1073 2662 4.742649 AGGAGAGTCCGGCGAGCA 62.743 66.667 9.30 0.00 42.75 4.26
1102 2691 2.346541 GGCAAGAGCAAGGCCTTCC 61.347 63.158 17.29 6.69 44.32 3.46
1110 2699 1.857638 GCAAGGCCTTCCCCTTCTCT 61.858 60.000 17.29 0.00 43.23 3.10
1116 2705 1.065053 GCCTTCCCCTTCTCTTTCTCC 60.065 57.143 0.00 0.00 0.00 3.71
1265 2857 3.717294 CAGCCCGGCTAAGGTGGT 61.717 66.667 12.83 0.00 36.40 4.16
1269 2861 1.607612 CCCGGCTAAGGTGGTGATT 59.392 57.895 0.00 0.00 0.00 2.57
1560 3152 1.764054 CATCCCCTTCTCCCTCGCT 60.764 63.158 0.00 0.00 0.00 4.93
2130 3722 7.872993 AGAATTTTCGTAAATCTCTGTCACTCA 59.127 33.333 0.16 0.00 32.85 3.41
2208 7035 7.283127 AGCCACGATGAAAATATTGTATCAGTT 59.717 33.333 0.00 0.00 0.00 3.16
2213 7040 9.603298 CGATGAAAATATTGTATCAGTTGATGG 57.397 33.333 4.90 0.00 36.05 3.51
2234 7061 4.082463 TGGAAACAAATTCTTACATCCGCC 60.082 41.667 0.00 0.00 38.18 6.13
2241 7068 1.153449 CTTACATCCGCCGGAAGCA 60.153 57.895 11.19 0.00 44.04 3.91
2251 7078 0.681243 GCCGGAAGCAATTCCCTCTT 60.681 55.000 5.05 0.00 42.97 2.85
2252 7079 1.383523 CCGGAAGCAATTCCCTCTTC 58.616 55.000 0.00 0.00 37.84 2.87
2253 7080 1.065126 CCGGAAGCAATTCCCTCTTCT 60.065 52.381 0.00 0.00 37.84 2.85
2254 7081 2.619074 CCGGAAGCAATTCCCTCTTCTT 60.619 50.000 0.00 0.00 37.84 2.52
2255 7082 3.084786 CGGAAGCAATTCCCTCTTCTTT 58.915 45.455 1.55 0.00 37.84 2.52
2256 7083 3.507622 CGGAAGCAATTCCCTCTTCTTTT 59.492 43.478 1.55 0.00 37.84 2.27
2257 7084 4.021981 CGGAAGCAATTCCCTCTTCTTTTT 60.022 41.667 1.55 0.00 37.84 1.94
2290 7117 9.109393 TCCGAAAAGGATCAAATCTATTGTAAG 57.891 33.333 0.00 0.00 45.98 2.34
2317 7144 7.015226 TGCATTGAAAGTACAAAGGATATCG 57.985 36.000 0.00 0.00 33.44 2.92
2355 7182 2.826979 TCGAGAACGATCACTACTGC 57.173 50.000 0.00 0.00 43.81 4.40
2356 7183 1.400846 TCGAGAACGATCACTACTGCC 59.599 52.381 0.00 0.00 43.81 4.85
2357 7184 1.828832 GAGAACGATCACTACTGCCG 58.171 55.000 0.00 0.00 0.00 5.69
2358 7185 0.179134 AGAACGATCACTACTGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
2359 7186 1.146358 GAACGATCACTACTGCCGCC 61.146 60.000 0.00 0.00 0.00 6.13
2360 7187 1.884075 AACGATCACTACTGCCGCCA 61.884 55.000 0.00 0.00 0.00 5.69
2361 7188 1.589993 CGATCACTACTGCCGCCAG 60.590 63.158 0.00 0.00 44.80 4.85
2362 7189 1.816537 GATCACTACTGCCGCCAGA 59.183 57.895 0.00 0.00 41.77 3.86
2363 7190 0.249238 GATCACTACTGCCGCCAGAG 60.249 60.000 0.00 0.00 41.77 3.35
2364 7191 2.303549 ATCACTACTGCCGCCAGAGC 62.304 60.000 0.00 0.00 41.77 4.09
2412 7239 4.394712 CCTGTCGGAGCCGGCTTT 62.395 66.667 33.34 9.88 45.16 3.51
2413 7240 2.577059 CTGTCGGAGCCGGCTTTA 59.423 61.111 33.34 16.53 45.16 1.85
2414 7241 1.810030 CTGTCGGAGCCGGCTTTAC 60.810 63.158 33.34 26.80 45.16 2.01
2415 7242 2.510918 GTCGGAGCCGGCTTTACC 60.511 66.667 33.34 25.89 41.28 2.85
2416 7243 2.682494 TCGGAGCCGGCTTTACCT 60.682 61.111 33.34 6.93 40.25 3.08
2417 7244 2.267961 CGGAGCCGGCTTTACCTT 59.732 61.111 33.34 5.97 35.61 3.50
2418 7245 2.106683 CGGAGCCGGCTTTACCTTG 61.107 63.158 33.34 11.67 35.61 3.61
2419 7246 1.002502 GGAGCCGGCTTTACCTTGT 60.003 57.895 33.34 4.05 35.61 3.16
2420 7247 1.025113 GGAGCCGGCTTTACCTTGTC 61.025 60.000 33.34 14.52 35.61 3.18
2421 7248 1.359459 GAGCCGGCTTTACCTTGTCG 61.359 60.000 33.34 0.00 35.61 4.35
2422 7249 1.375013 GCCGGCTTTACCTTGTCGA 60.375 57.895 22.15 0.00 35.61 4.20
2423 7250 0.743345 GCCGGCTTTACCTTGTCGAT 60.743 55.000 22.15 0.00 35.61 3.59
2424 7251 1.472026 GCCGGCTTTACCTTGTCGATA 60.472 52.381 22.15 0.00 35.61 2.92
2425 7252 2.896168 CCGGCTTTACCTTGTCGATAA 58.104 47.619 0.00 0.00 35.61 1.75
2426 7253 2.606272 CCGGCTTTACCTTGTCGATAAC 59.394 50.000 0.00 0.00 35.61 1.89
2427 7254 2.280708 CGGCTTTACCTTGTCGATAACG 59.719 50.000 0.00 0.00 37.26 3.18
2428 7255 2.606272 GGCTTTACCTTGTCGATAACGG 59.394 50.000 8.23 8.23 36.32 4.44
2429 7256 2.030091 GCTTTACCTTGTCGATAACGGC 59.970 50.000 9.28 0.00 44.90 5.68
2430 7257 3.518590 CTTTACCTTGTCGATAACGGCT 58.481 45.455 0.00 2.60 44.93 5.52
2431 7258 4.675510 CTTTACCTTGTCGATAACGGCTA 58.324 43.478 0.00 0.00 44.93 3.93
2432 7259 2.865343 ACCTTGTCGATAACGGCTAG 57.135 50.000 1.70 1.70 44.93 3.42
2435 7262 3.431922 CTTGTCGATAACGGCTAGGAA 57.568 47.619 0.00 0.00 44.93 3.36
2436 7263 3.372954 CTTGTCGATAACGGCTAGGAAG 58.627 50.000 0.00 0.00 44.93 3.46
2437 7264 2.372264 TGTCGATAACGGCTAGGAAGT 58.628 47.619 0.00 0.00 44.93 3.01
2438 7265 2.357009 TGTCGATAACGGCTAGGAAGTC 59.643 50.000 0.00 0.00 44.93 3.01
2439 7266 2.617774 GTCGATAACGGCTAGGAAGTCT 59.382 50.000 0.00 0.00 41.20 3.24
2440 7267 3.066481 GTCGATAACGGCTAGGAAGTCTT 59.934 47.826 0.00 0.00 41.20 3.01
2441 7268 3.314635 TCGATAACGGCTAGGAAGTCTTC 59.685 47.826 3.80 3.80 40.21 2.87
2442 7269 3.630101 GATAACGGCTAGGAAGTCTTCG 58.370 50.000 6.50 0.00 0.00 3.79
2443 7270 1.254954 AACGGCTAGGAAGTCTTCGT 58.745 50.000 12.19 12.19 0.00 3.85
2444 7271 0.526662 ACGGCTAGGAAGTCTTCGTG 59.473 55.000 16.31 8.57 0.00 4.35
2445 7272 0.802607 CGGCTAGGAAGTCTTCGTGC 60.803 60.000 16.31 15.79 0.00 5.34
2446 7273 0.246635 GGCTAGGAAGTCTTCGTGCA 59.753 55.000 16.31 0.00 0.00 4.57
2447 7274 1.351153 GCTAGGAAGTCTTCGTGCAC 58.649 55.000 16.31 6.82 0.00 4.57
2448 7275 1.336887 GCTAGGAAGTCTTCGTGCACA 60.337 52.381 18.64 0.81 0.00 4.57
2449 7276 2.675317 GCTAGGAAGTCTTCGTGCACAT 60.675 50.000 18.64 0.00 0.00 3.21
2450 7277 1.800805 AGGAAGTCTTCGTGCACATG 58.199 50.000 18.64 6.02 0.00 3.21
2451 7278 0.166814 GGAAGTCTTCGTGCACATGC 59.833 55.000 18.64 0.00 42.50 4.06
2452 7279 0.166814 GAAGTCTTCGTGCACATGCC 59.833 55.000 18.64 0.00 41.18 4.40
2453 7280 0.534877 AAGTCTTCGTGCACATGCCA 60.535 50.000 18.64 0.00 41.18 4.92
2454 7281 0.321919 AGTCTTCGTGCACATGCCAT 60.322 50.000 18.64 0.00 41.18 4.40
2455 7282 1.066215 AGTCTTCGTGCACATGCCATA 60.066 47.619 18.64 0.00 41.18 2.74
2456 7283 1.737236 GTCTTCGTGCACATGCCATAA 59.263 47.619 18.64 0.00 41.18 1.90
2457 7284 2.009051 TCTTCGTGCACATGCCATAAG 58.991 47.619 18.64 8.03 41.18 1.73
2458 7285 1.064505 CTTCGTGCACATGCCATAAGG 59.935 52.381 18.64 0.00 41.18 2.69
2459 7286 0.251634 TCGTGCACATGCCATAAGGA 59.748 50.000 18.64 0.00 41.18 3.36
2460 7287 0.378257 CGTGCACATGCCATAAGGAC 59.622 55.000 18.64 0.00 41.18 3.85
2461 7288 0.740737 GTGCACATGCCATAAGGACC 59.259 55.000 13.17 0.00 41.18 4.46
2462 7289 0.330941 TGCACATGCCATAAGGACCA 59.669 50.000 0.49 0.00 41.18 4.02
2463 7290 1.272369 TGCACATGCCATAAGGACCAA 60.272 47.619 0.49 0.00 41.18 3.67
2464 7291 1.134946 GCACATGCCATAAGGACCAAC 59.865 52.381 0.00 0.00 36.89 3.77
2465 7292 2.445427 CACATGCCATAAGGACCAACA 58.555 47.619 0.00 0.00 36.89 3.33
2466 7293 2.164219 CACATGCCATAAGGACCAACAC 59.836 50.000 0.00 0.00 36.89 3.32
2467 7294 1.750778 CATGCCATAAGGACCAACACC 59.249 52.381 0.00 0.00 36.89 4.16
2468 7295 1.072266 TGCCATAAGGACCAACACCT 58.928 50.000 0.00 0.00 39.69 4.00
2470 7297 2.092323 GCCATAAGGACCAACACCTTC 58.908 52.381 0.00 0.00 45.14 3.46
2471 7298 2.554344 GCCATAAGGACCAACACCTTCA 60.554 50.000 0.00 0.00 45.14 3.02
2472 7299 3.761897 CCATAAGGACCAACACCTTCAA 58.238 45.455 0.00 0.00 45.14 2.69
2473 7300 3.758554 CCATAAGGACCAACACCTTCAAG 59.241 47.826 0.00 0.00 45.14 3.02
2474 7301 1.692411 AAGGACCAACACCTTCAAGC 58.308 50.000 0.00 0.00 43.22 4.01
2475 7302 0.178990 AGGACCAACACCTTCAAGCC 60.179 55.000 0.00 0.00 33.55 4.35
2476 7303 1.515521 GGACCAACACCTTCAAGCCG 61.516 60.000 0.00 0.00 0.00 5.52
2477 7304 2.130073 GACCAACACCTTCAAGCCGC 62.130 60.000 0.00 0.00 0.00 6.53
2478 7305 2.192861 CCAACACCTTCAAGCCGCA 61.193 57.895 0.00 0.00 0.00 5.69
2479 7306 1.283793 CAACACCTTCAAGCCGCAG 59.716 57.895 0.00 0.00 0.00 5.18
2480 7307 1.152963 AACACCTTCAAGCCGCAGT 60.153 52.632 0.00 0.00 0.00 4.40
2481 7308 0.751643 AACACCTTCAAGCCGCAGTT 60.752 50.000 0.00 0.00 0.00 3.16
2482 7309 1.283793 CACCTTCAAGCCGCAGTTG 59.716 57.895 0.00 0.00 0.00 3.16
2483 7310 1.152963 ACCTTCAAGCCGCAGTTGT 60.153 52.632 0.00 0.00 0.00 3.32
2484 7311 1.166531 ACCTTCAAGCCGCAGTTGTC 61.167 55.000 0.00 0.00 0.00 3.18
2485 7312 1.576421 CTTCAAGCCGCAGTTGTCC 59.424 57.895 0.00 0.00 0.00 4.02
2486 7313 1.856265 CTTCAAGCCGCAGTTGTCCC 61.856 60.000 0.00 0.00 0.00 4.46
2487 7314 2.281761 CAAGCCGCAGTTGTCCCT 60.282 61.111 0.00 0.00 0.00 4.20
2488 7315 2.281761 AAGCCGCAGTTGTCCCTG 60.282 61.111 0.00 0.00 35.49 4.45
2489 7316 3.120086 AAGCCGCAGTTGTCCCTGT 62.120 57.895 0.00 0.00 34.84 4.00
2490 7317 2.594592 GCCGCAGTTGTCCCTGTT 60.595 61.111 0.00 0.00 34.84 3.16
2491 7318 2.908073 GCCGCAGTTGTCCCTGTTG 61.908 63.158 0.00 0.00 34.84 3.33
2492 7319 1.227823 CCGCAGTTGTCCCTGTTGA 60.228 57.895 0.00 0.00 34.84 3.18
2493 7320 0.817634 CCGCAGTTGTCCCTGTTGAA 60.818 55.000 0.00 0.00 34.84 2.69
2494 7321 0.307760 CGCAGTTGTCCCTGTTGAAC 59.692 55.000 0.00 0.00 34.84 3.18
2495 7322 0.668535 GCAGTTGTCCCTGTTGAACC 59.331 55.000 0.00 0.00 34.84 3.62
2496 7323 1.318576 CAGTTGTCCCTGTTGAACCC 58.681 55.000 0.00 0.00 0.00 4.11
2497 7324 1.133792 CAGTTGTCCCTGTTGAACCCT 60.134 52.381 0.00 0.00 0.00 4.34
2498 7325 1.569072 AGTTGTCCCTGTTGAACCCTT 59.431 47.619 0.00 0.00 0.00 3.95
2499 7326 1.681264 GTTGTCCCTGTTGAACCCTTG 59.319 52.381 0.00 0.00 0.00 3.61
2500 7327 0.467290 TGTCCCTGTTGAACCCTTGC 60.467 55.000 0.00 0.00 0.00 4.01
2501 7328 0.467290 GTCCCTGTTGAACCCTTGCA 60.467 55.000 0.00 0.00 0.00 4.08
2502 7329 0.482446 TCCCTGTTGAACCCTTGCAT 59.518 50.000 0.00 0.00 0.00 3.96
2503 7330 1.707989 TCCCTGTTGAACCCTTGCATA 59.292 47.619 0.00 0.00 0.00 3.14
2504 7331 2.094675 CCCTGTTGAACCCTTGCATAG 58.905 52.381 0.00 0.00 0.00 2.23
2505 7332 2.290896 CCCTGTTGAACCCTTGCATAGA 60.291 50.000 0.00 0.00 0.00 1.98
2506 7333 3.624777 CCTGTTGAACCCTTGCATAGAT 58.375 45.455 0.00 0.00 0.00 1.98
2507 7334 4.385199 CCCTGTTGAACCCTTGCATAGATA 60.385 45.833 0.00 0.00 0.00 1.98
2508 7335 5.380043 CCTGTTGAACCCTTGCATAGATAT 58.620 41.667 0.00 0.00 0.00 1.63
2509 7336 5.240183 CCTGTTGAACCCTTGCATAGATATG 59.760 44.000 0.00 0.00 36.78 1.78
2510 7337 6.000246 TGTTGAACCCTTGCATAGATATGA 58.000 37.500 4.01 0.00 35.75 2.15
2511 7338 6.422333 TGTTGAACCCTTGCATAGATATGAA 58.578 36.000 4.01 0.00 35.75 2.57
2512 7339 6.543465 TGTTGAACCCTTGCATAGATATGAAG 59.457 38.462 4.01 5.03 35.75 3.02
2513 7340 5.065914 TGAACCCTTGCATAGATATGAAGC 58.934 41.667 4.01 0.00 35.75 3.86
2514 7341 4.712051 ACCCTTGCATAGATATGAAGCA 57.288 40.909 4.01 0.00 35.75 3.91
2515 7342 4.392940 ACCCTTGCATAGATATGAAGCAC 58.607 43.478 4.01 0.00 35.75 4.40
2516 7343 3.755378 CCCTTGCATAGATATGAAGCACC 59.245 47.826 4.01 0.00 35.75 5.01
2517 7344 4.392047 CCTTGCATAGATATGAAGCACCA 58.608 43.478 4.01 0.00 35.75 4.17
2518 7345 4.823442 CCTTGCATAGATATGAAGCACCAA 59.177 41.667 4.01 0.00 35.75 3.67
2519 7346 5.300034 CCTTGCATAGATATGAAGCACCAAA 59.700 40.000 4.01 0.00 35.75 3.28
2520 7347 6.015688 CCTTGCATAGATATGAAGCACCAAAT 60.016 38.462 4.01 0.00 35.75 2.32
2521 7348 6.564709 TGCATAGATATGAAGCACCAAATC 57.435 37.500 4.01 0.00 35.75 2.17
2522 7349 6.301486 TGCATAGATATGAAGCACCAAATCT 58.699 36.000 4.01 0.00 35.75 2.40
2523 7350 6.429078 TGCATAGATATGAAGCACCAAATCTC 59.571 38.462 4.01 0.00 35.75 2.75
2524 7351 6.429078 GCATAGATATGAAGCACCAAATCTCA 59.571 38.462 4.01 0.00 35.75 3.27
2525 7352 7.572724 GCATAGATATGAAGCACCAAATCTCAC 60.573 40.741 4.01 0.00 35.75 3.51
2526 7353 5.128919 AGATATGAAGCACCAAATCTCACC 58.871 41.667 0.00 0.00 0.00 4.02
2527 7354 2.655090 TGAAGCACCAAATCTCACCA 57.345 45.000 0.00 0.00 0.00 4.17
2528 7355 2.229792 TGAAGCACCAAATCTCACCAC 58.770 47.619 0.00 0.00 0.00 4.16
2529 7356 2.229792 GAAGCACCAAATCTCACCACA 58.770 47.619 0.00 0.00 0.00 4.17
2530 7357 1.609208 AGCACCAAATCTCACCACAC 58.391 50.000 0.00 0.00 0.00 3.82
2531 7358 1.133823 AGCACCAAATCTCACCACACA 60.134 47.619 0.00 0.00 0.00 3.72
2532 7359 1.680735 GCACCAAATCTCACCACACAA 59.319 47.619 0.00 0.00 0.00 3.33
2533 7360 2.543653 GCACCAAATCTCACCACACAAC 60.544 50.000 0.00 0.00 0.00 3.32
2534 7361 2.687425 CACCAAATCTCACCACACAACA 59.313 45.455 0.00 0.00 0.00 3.33
2535 7362 3.130164 CACCAAATCTCACCACACAACAA 59.870 43.478 0.00 0.00 0.00 2.83
2536 7363 3.960102 ACCAAATCTCACCACACAACAAT 59.040 39.130 0.00 0.00 0.00 2.71
2537 7364 5.009510 CACCAAATCTCACCACACAACAATA 59.990 40.000 0.00 0.00 0.00 1.90
2538 7365 5.596361 ACCAAATCTCACCACACAACAATAA 59.404 36.000 0.00 0.00 0.00 1.40
2539 7366 6.097554 ACCAAATCTCACCACACAACAATAAA 59.902 34.615 0.00 0.00 0.00 1.40
2540 7367 6.420604 CCAAATCTCACCACACAACAATAAAC 59.579 38.462 0.00 0.00 0.00 2.01
2541 7368 5.705609 ATCTCACCACACAACAATAAACC 57.294 39.130 0.00 0.00 0.00 3.27
2542 7369 3.886505 TCTCACCACACAACAATAAACCC 59.113 43.478 0.00 0.00 0.00 4.11
2543 7370 3.632333 TCACCACACAACAATAAACCCA 58.368 40.909 0.00 0.00 0.00 4.51
2544 7371 3.381908 TCACCACACAACAATAAACCCAC 59.618 43.478 0.00 0.00 0.00 4.61
2545 7372 2.359531 ACCACACAACAATAAACCCACG 59.640 45.455 0.00 0.00 0.00 4.94
2546 7373 2.359531 CCACACAACAATAAACCCACGT 59.640 45.455 0.00 0.00 0.00 4.49
2547 7374 3.549221 CCACACAACAATAAACCCACGTC 60.549 47.826 0.00 0.00 0.00 4.34
2548 7375 3.065510 CACACAACAATAAACCCACGTCA 59.934 43.478 0.00 0.00 0.00 4.35
2549 7376 3.065648 ACACAACAATAAACCCACGTCAC 59.934 43.478 0.00 0.00 0.00 3.67
2550 7377 3.314080 CACAACAATAAACCCACGTCACT 59.686 43.478 0.00 0.00 0.00 3.41
2551 7378 3.314080 ACAACAATAAACCCACGTCACTG 59.686 43.478 0.00 0.00 0.00 3.66
2552 7379 1.877443 ACAATAAACCCACGTCACTGC 59.123 47.619 0.00 0.00 0.00 4.40
2553 7380 1.199097 CAATAAACCCACGTCACTGCC 59.801 52.381 0.00 0.00 0.00 4.85
2554 7381 0.322187 ATAAACCCACGTCACTGCCC 60.322 55.000 0.00 0.00 0.00 5.36
2555 7382 2.400269 TAAACCCACGTCACTGCCCC 62.400 60.000 0.00 0.00 0.00 5.80
2557 7384 4.263572 CCCACGTCACTGCCCCAA 62.264 66.667 0.00 0.00 0.00 4.12
2558 7385 2.669569 CCACGTCACTGCCCCAAG 60.670 66.667 0.00 0.00 0.00 3.61
2559 7386 2.669569 CACGTCACTGCCCCAAGG 60.670 66.667 0.00 0.00 0.00 3.61
2560 7387 2.847234 ACGTCACTGCCCCAAGGA 60.847 61.111 0.00 0.00 33.47 3.36
2561 7388 2.046892 CGTCACTGCCCCAAGGAG 60.047 66.667 0.00 0.00 33.47 3.69
2562 7389 2.583441 CGTCACTGCCCCAAGGAGA 61.583 63.158 0.00 0.00 33.47 3.71
2563 7390 1.003233 GTCACTGCCCCAAGGAGAC 60.003 63.158 0.00 0.00 33.47 3.36
2564 7391 2.046892 CACTGCCCCAAGGAGACG 60.047 66.667 0.00 0.00 33.47 4.18
2565 7392 3.322466 ACTGCCCCAAGGAGACGG 61.322 66.667 0.00 0.00 33.47 4.79
2566 7393 3.322466 CTGCCCCAAGGAGACGGT 61.322 66.667 0.00 0.00 33.47 4.83
2567 7394 1.987855 CTGCCCCAAGGAGACGGTA 60.988 63.158 0.00 0.00 33.47 4.02
2568 7395 1.536907 TGCCCCAAGGAGACGGTAA 60.537 57.895 0.00 0.00 33.47 2.85
2569 7396 1.128809 TGCCCCAAGGAGACGGTAAA 61.129 55.000 0.00 0.00 33.47 2.01
2570 7397 0.037160 GCCCCAAGGAGACGGTAAAA 59.963 55.000 0.00 0.00 33.47 1.52
2571 7398 1.546099 GCCCCAAGGAGACGGTAAAAA 60.546 52.381 0.00 0.00 33.47 1.94
2572 7399 2.882643 GCCCCAAGGAGACGGTAAAAAT 60.883 50.000 0.00 0.00 33.47 1.82
2573 7400 3.014623 CCCCAAGGAGACGGTAAAAATC 58.985 50.000 0.00 0.00 33.47 2.17
2574 7401 3.308188 CCCCAAGGAGACGGTAAAAATCT 60.308 47.826 0.00 0.00 33.47 2.40
2575 7402 3.689649 CCCAAGGAGACGGTAAAAATCTG 59.310 47.826 0.00 0.00 0.00 2.90
2576 7403 3.127030 CCAAGGAGACGGTAAAAATCTGC 59.873 47.826 0.00 0.00 0.00 4.26
2577 7404 3.983044 AGGAGACGGTAAAAATCTGCT 57.017 42.857 0.00 0.00 36.44 4.24
2578 7405 3.863041 AGGAGACGGTAAAAATCTGCTC 58.137 45.455 0.00 0.00 36.53 4.26
2579 7406 2.937149 GGAGACGGTAAAAATCTGCTCC 59.063 50.000 0.00 0.00 34.55 4.70
2580 7407 2.603560 GAGACGGTAAAAATCTGCTCCG 59.396 50.000 0.00 0.00 42.94 4.63
2581 7408 1.664151 GACGGTAAAAATCTGCTCCGG 59.336 52.381 0.00 0.00 41.82 5.14
2582 7409 1.276989 ACGGTAAAAATCTGCTCCGGA 59.723 47.619 2.93 2.93 41.82 5.14
2583 7410 1.933853 CGGTAAAAATCTGCTCCGGAG 59.066 52.381 27.83 27.83 35.25 4.63
2597 7424 3.900855 GGAGCTCCGTGTCGACTA 58.099 61.111 19.06 0.00 0.00 2.59
2598 7425 1.428620 GGAGCTCCGTGTCGACTAC 59.571 63.158 19.06 12.01 0.00 2.73
2599 7426 1.060622 GAGCTCCGTGTCGACTACG 59.939 63.158 24.22 24.22 40.98 3.51
2600 7427 1.633852 GAGCTCCGTGTCGACTACGT 61.634 60.000 26.83 15.66 39.76 3.57
2601 7428 1.511464 GCTCCGTGTCGACTACGTG 60.511 63.158 26.83 21.78 39.76 4.49
2602 7429 1.511464 CTCCGTGTCGACTACGTGC 60.511 63.158 26.83 9.15 39.76 5.34
2603 7430 2.178892 CTCCGTGTCGACTACGTGCA 62.179 60.000 26.83 15.80 39.76 4.57
2604 7431 1.796355 CCGTGTCGACTACGTGCAG 60.796 63.158 26.83 15.06 39.76 4.41
2605 7432 1.205820 CGTGTCGACTACGTGCAGA 59.794 57.895 23.40 0.00 40.69 4.26
2606 7433 1.058590 CGTGTCGACTACGTGCAGAC 61.059 60.000 23.40 8.93 40.69 3.51
2632 7459 5.165961 TGAATTCGAGGAGGATCAAAACT 57.834 39.130 0.04 0.00 36.25 2.66
2635 7462 2.656560 CGAGGAGGATCAAAACTCGT 57.343 50.000 15.64 6.06 44.18 4.18
2638 7465 4.106197 CGAGGAGGATCAAAACTCGTAAG 58.894 47.826 15.64 2.13 44.18 2.34
2650 7477 9.965824 ATCAAAACTCGTAAGACAAATTCAAAT 57.034 25.926 0.00 0.00 45.01 2.32
2651 7478 9.232082 TCAAAACTCGTAAGACAAATTCAAATG 57.768 29.630 0.00 0.00 45.01 2.32
2653 7480 9.796120 AAAACTCGTAAGACAAATTCAAATGAA 57.204 25.926 0.00 0.00 45.01 2.57
2654 7481 9.965824 AAACTCGTAAGACAAATTCAAATGAAT 57.034 25.926 2.83 2.83 43.94 2.57
2655 7482 9.612620 AACTCGTAAGACAAATTCAAATGAATC 57.387 29.630 8.96 0.00 42.30 2.52
2663 7787 8.591072 AGACAAATTCAAATGAATCCAGTGAAT 58.409 29.630 8.96 0.00 43.41 2.57
2667 7791 8.997621 AATTCAAATGAATCCAGTGAATCTTG 57.002 30.769 8.96 0.00 43.41 3.02
2668 7792 6.519679 TCAAATGAATCCAGTGAATCTTGG 57.480 37.500 0.00 0.00 0.00 3.61
2681 7805 3.009473 TGAATCTTGGAGGGGAGAGTTTG 59.991 47.826 0.00 0.00 0.00 2.93
2682 7806 2.118403 TCTTGGAGGGGAGAGTTTGT 57.882 50.000 0.00 0.00 0.00 2.83
2683 7807 2.418669 TCTTGGAGGGGAGAGTTTGTT 58.581 47.619 0.00 0.00 0.00 2.83
2685 7809 1.814429 TGGAGGGGAGAGTTTGTTCA 58.186 50.000 0.00 0.00 0.00 3.18
2690 7814 2.514160 AGGGGAGAGTTTGTTCAGGTTT 59.486 45.455 0.00 0.00 0.00 3.27
2692 7816 2.623416 GGGAGAGTTTGTTCAGGTTTGG 59.377 50.000 0.00 0.00 0.00 3.28
2693 7817 2.623416 GGAGAGTTTGTTCAGGTTTGGG 59.377 50.000 0.00 0.00 0.00 4.12
2695 7819 2.024369 AGAGTTTGTTCAGGTTTGGGGT 60.024 45.455 0.00 0.00 0.00 4.95
2697 7821 1.138069 GTTTGTTCAGGTTTGGGGTGG 59.862 52.381 0.00 0.00 0.00 4.61
2698 7822 0.631753 TTGTTCAGGTTTGGGGTGGA 59.368 50.000 0.00 0.00 0.00 4.02
2699 7823 0.106419 TGTTCAGGTTTGGGGTGGAC 60.106 55.000 0.00 0.00 0.00 4.02
2700 7824 0.185175 GTTCAGGTTTGGGGTGGACT 59.815 55.000 0.00 0.00 0.00 3.85
2701 7825 1.422402 GTTCAGGTTTGGGGTGGACTA 59.578 52.381 0.00 0.00 0.00 2.59
2702 7826 2.041216 GTTCAGGTTTGGGGTGGACTAT 59.959 50.000 0.00 0.00 0.00 2.12
2703 7827 3.208570 TCAGGTTTGGGGTGGACTATA 57.791 47.619 0.00 0.00 0.00 1.31
2704 7828 2.841881 TCAGGTTTGGGGTGGACTATAC 59.158 50.000 0.00 0.00 0.00 1.47
2705 7829 1.835531 AGGTTTGGGGTGGACTATACG 59.164 52.381 0.00 0.00 0.00 3.06
2706 7830 1.556451 GGTTTGGGGTGGACTATACGT 59.444 52.381 0.00 0.00 0.00 3.57
2707 7831 2.419159 GGTTTGGGGTGGACTATACGTC 60.419 54.545 0.00 0.00 42.07 4.34
2712 7836 4.655963 TGGGGTGGACTATACGTCTATAC 58.344 47.826 0.00 0.00 42.44 1.47
2718 7842 4.756642 TGGACTATACGTCTATACCGGTTG 59.243 45.833 15.04 3.69 42.44 3.77
2739 7863 5.497464 TGTTGGACAGAATTAGATGGACA 57.503 39.130 0.00 0.00 0.00 4.02
2761 7885 6.215845 ACACAAAATTTAGTCATGTGGAAGC 58.784 36.000 19.10 0.00 44.24 3.86
2789 7913 9.474920 AAATATCACGACAATGAAAACACAATT 57.525 25.926 0.00 0.00 30.82 2.32
2846 7971 8.168681 GAAACAAATTTCTTTCGAGTCAAACA 57.831 30.769 3.59 0.00 41.01 2.83
2847 7972 7.506296 AACAAATTTCTTTCGAGTCAAACAC 57.494 32.000 0.00 0.00 0.00 3.32
2848 7973 6.033966 ACAAATTTCTTTCGAGTCAAACACC 58.966 36.000 0.00 0.00 0.00 4.16
2849 7974 3.936902 TTTCTTTCGAGTCAAACACCG 57.063 42.857 0.00 0.00 0.00 4.94
2850 7975 2.875087 TCTTTCGAGTCAAACACCGA 57.125 45.000 0.00 0.00 0.00 4.69
2851 7976 3.167921 TCTTTCGAGTCAAACACCGAA 57.832 42.857 0.00 0.00 36.50 4.30
2852 7977 3.523547 TCTTTCGAGTCAAACACCGAAA 58.476 40.909 14.55 14.55 41.42 3.46
2853 7978 3.933955 TCTTTCGAGTCAAACACCGAAAA 59.066 39.130 15.48 8.43 42.24 2.29
2854 7979 4.392445 TCTTTCGAGTCAAACACCGAAAAA 59.608 37.500 15.48 5.82 42.24 1.94
2855 7980 3.936902 TCGAGTCAAACACCGAAAAAG 57.063 42.857 0.00 0.00 0.00 2.27
2866 7991 9.372369 TCAAACACCGAAAAAGAATTACAAATT 57.628 25.926 0.00 0.00 0.00 1.82
2901 8026 9.326413 TGCTCAGCCTAAGTTTATATTTCTAAC 57.674 33.333 0.00 0.00 0.00 2.34
2913 8038 9.021863 GTTTATATTTCTAACAGACCAGTCGAG 57.978 37.037 0.00 0.00 34.09 4.04
2914 8039 6.777213 ATATTTCTAACAGACCAGTCGAGT 57.223 37.500 0.00 0.00 34.09 4.18
2916 8041 4.931661 TTCTAACAGACCAGTCGAGTTT 57.068 40.909 14.00 1.07 35.49 2.66
2933 8059 8.283992 AGTCGAGTTTTCTGATGATACGTATAG 58.716 37.037 8.34 2.28 0.00 1.31
2936 8062 9.268255 CGAGTTTTCTGATGATACGTATAGATC 57.732 37.037 8.34 12.98 0.00 2.75
2952 8078 5.799827 ATAGATCAAGTAGTGCCCTCTTC 57.200 43.478 0.00 0.00 0.00 2.87
2967 8093 7.067981 AGTGCCCTCTTCATTATTGATCTTTTC 59.932 37.037 0.00 0.00 0.00 2.29
3027 8174 1.202099 TGTCGTTGGGGGCTCCATTA 61.202 55.000 7.09 0.00 46.52 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.671928 CAGTGTACTGTACCAGTTAACGC 59.328 47.826 14.91 2.92 42.59 4.84
32 33 1.733526 GTTGCTGTGCGGGAAAACT 59.266 52.632 0.00 0.00 0.00 2.66
76 77 5.030936 CCAGCTTCGCTAATTAAAGAAAGC 58.969 41.667 11.00 11.00 36.40 3.51
140 1624 4.117685 AGAACACGACACTGTACTTTTCC 58.882 43.478 0.00 0.00 0.00 3.13
141 1625 5.276726 GGAAGAACACGACACTGTACTTTTC 60.277 44.000 0.00 0.00 0.00 2.29
142 1626 4.569564 GGAAGAACACGACACTGTACTTTT 59.430 41.667 0.00 0.00 0.00 2.27
143 1627 4.117685 GGAAGAACACGACACTGTACTTT 58.882 43.478 0.00 0.00 0.00 2.66
144 1628 3.383825 AGGAAGAACACGACACTGTACTT 59.616 43.478 0.00 0.00 0.00 2.24
249 1740 5.065090 TCACATCAGTGTTGCTGTATTATGC 59.935 40.000 0.94 0.00 46.01 3.14
262 1753 6.109156 TGTACAGGTAATTCACATCAGTGT 57.891 37.500 0.00 0.00 46.01 3.55
386 1918 3.371917 CCATTGCCATTCTTCCACTCCTA 60.372 47.826 0.00 0.00 0.00 2.94
443 1975 1.561643 TGCTTCTCTTCTCCCATCGT 58.438 50.000 0.00 0.00 0.00 3.73
444 1976 2.548875 CTTGCTTCTCTTCTCCCATCG 58.451 52.381 0.00 0.00 0.00 3.84
445 1977 2.287769 GCTTGCTTCTCTTCTCCCATC 58.712 52.381 0.00 0.00 0.00 3.51
446 1978 1.632409 TGCTTGCTTCTCTTCTCCCAT 59.368 47.619 0.00 0.00 0.00 4.00
455 1987 1.002868 TCCTGCCTGCTTGCTTCTC 60.003 57.895 0.00 0.00 0.00 2.87
506 2039 1.950630 CAACGTTGGCTTGGCTTGC 60.951 57.895 20.71 0.00 0.00 4.01
507 2040 1.950630 GCAACGTTGGCTTGGCTTG 60.951 57.895 28.33 1.05 0.00 4.01
508 2041 2.127232 AGCAACGTTGGCTTGGCTT 61.127 52.632 28.33 2.79 38.81 4.35
509 2042 2.519302 AGCAACGTTGGCTTGGCT 60.519 55.556 28.33 15.83 38.81 4.75
521 2054 4.201714 GGCTGAAACTGAAAACAAAGCAAC 60.202 41.667 0.00 0.00 0.00 4.17
578 2111 2.044551 GCAGAGGGAGCAAAGGGG 60.045 66.667 0.00 0.00 0.00 4.79
606 2139 7.379797 CGAACACTCATGATTCGTCAATACTAT 59.620 37.037 17.71 0.00 40.19 2.12
607 2140 6.691388 CGAACACTCATGATTCGTCAATACTA 59.309 38.462 17.71 0.00 40.19 1.82
608 2141 5.516696 CGAACACTCATGATTCGTCAATACT 59.483 40.000 17.71 0.00 40.19 2.12
609 2142 5.718246 CGAACACTCATGATTCGTCAATAC 58.282 41.667 17.71 0.00 40.19 1.89
610 2143 5.949233 CGAACACTCATGATTCGTCAATA 57.051 39.130 17.71 0.00 40.19 1.90
730 2267 0.250124 CCGGGCGCTAATTATGTCCA 60.250 55.000 7.64 0.00 0.00 4.02
731 2268 1.574702 GCCGGGCGCTAATTATGTCC 61.575 60.000 7.64 0.00 0.00 4.02
747 2284 2.591571 TGATCATCTGAACTCTGCCG 57.408 50.000 0.00 0.00 0.00 5.69
810 2347 0.539051 AGAGAGAAGGCAATGTCGGG 59.461 55.000 0.00 0.00 0.00 5.14
857 2394 3.616956 TTATGCACTACTTGAGCTGCT 57.383 42.857 0.00 0.00 34.89 4.24
862 2399 5.625251 CACAAGCTTTATGCACTACTTGAG 58.375 41.667 18.21 10.18 45.94 3.02
863 2400 4.083324 GCACAAGCTTTATGCACTACTTGA 60.083 41.667 22.09 0.00 45.94 3.02
884 2442 1.591703 CGCTACTGGGACTTGAGCA 59.408 57.895 0.00 0.00 32.55 4.26
911 2469 1.263217 CGACCTTAAAGCGTGCAAGTT 59.737 47.619 0.59 0.00 0.00 2.66
928 2486 3.706373 TGAGCTTGGAGGGGCGAC 61.706 66.667 0.00 0.00 0.00 5.19
937 2495 1.143305 CTTCTCGTGTGTGAGCTTGG 58.857 55.000 0.00 0.00 35.90 3.61
954 2534 1.469308 CTACAACTCCGACTCGAGCTT 59.531 52.381 13.61 0.00 32.79 3.74
960 2540 4.335874 TCTTGCTATCTACAACTCCGACTC 59.664 45.833 0.00 0.00 0.00 3.36
966 2546 4.759782 TGGCTTCTTGCTATCTACAACTC 58.240 43.478 0.00 0.00 42.39 3.01
975 2555 2.291153 TGGCTTCTTGGCTTCTTGCTAT 60.291 45.455 0.00 0.00 42.39 2.97
980 2560 1.143684 TGACTGGCTTCTTGGCTTCTT 59.856 47.619 0.00 0.00 42.34 2.52
1047 2627 1.513622 GGACTCTCCTTGCTCCGAC 59.486 63.158 0.00 0.00 32.53 4.79
1061 2641 4.379243 CCTTGTGCTCGCCGGACT 62.379 66.667 5.05 0.00 34.66 3.85
1073 2662 1.228367 CTCTTGCCACTGCCCTTGT 60.228 57.895 0.00 0.00 36.33 3.16
1081 2670 2.282745 GGCCTTGCTCTTGCCACT 60.283 61.111 0.00 0.00 44.70 4.00
1102 2691 1.222113 GCGGGGAGAAAGAGAAGGG 59.778 63.158 0.00 0.00 0.00 3.95
1110 2699 2.970639 CACGAGAGCGGGGAGAAA 59.029 61.111 0.00 0.00 43.17 2.52
1116 2705 4.200283 GAGAGCCACGAGAGCGGG 62.200 72.222 0.00 0.00 43.17 6.13
1247 2839 3.399181 CCACCTTAGCCGGGCTGA 61.399 66.667 31.26 22.42 40.10 4.26
1509 3101 4.436998 GCCTGGAGGTCACGGTCG 62.437 72.222 0.00 0.00 37.57 4.79
1807 3399 4.796231 CGACTCCCTGAACGCCCG 62.796 72.222 0.00 0.00 0.00 6.13
2146 6229 1.367471 GTTTCAGGCTGGCAAACCC 59.633 57.895 15.73 0.00 33.59 4.11
2208 7035 6.624861 GCGGATGTAAGAATTTGTTTCCATCA 60.625 38.462 14.76 0.00 34.65 3.07
2213 7040 4.095610 CGGCGGATGTAAGAATTTGTTTC 58.904 43.478 0.00 0.00 34.31 2.78
2286 7113 8.296713 TCCTTTGTACTTTCAATGCATTCTTAC 58.703 33.333 9.53 7.13 0.00 2.34
2290 7117 9.455847 GATATCCTTTGTACTTTCAATGCATTC 57.544 33.333 9.53 0.00 0.00 2.67
2293 7120 6.821160 TCGATATCCTTTGTACTTTCAATGCA 59.179 34.615 0.00 0.00 0.00 3.96
2295 7122 9.045223 TGATCGATATCCTTTGTACTTTCAATG 57.955 33.333 0.00 0.00 0.00 2.82
2337 7164 1.828832 GGCAGTAGTGATCGTTCTCG 58.171 55.000 0.42 0.00 38.55 4.04
2338 7165 1.828832 CGGCAGTAGTGATCGTTCTC 58.171 55.000 0.42 0.00 0.00 2.87
2339 7166 0.179134 GCGGCAGTAGTGATCGTTCT 60.179 55.000 0.42 0.00 0.00 3.01
2340 7167 1.146358 GGCGGCAGTAGTGATCGTTC 61.146 60.000 3.07 0.00 0.00 3.95
2341 7168 1.153628 GGCGGCAGTAGTGATCGTT 60.154 57.895 3.07 0.00 0.00 3.85
2342 7169 2.284798 CTGGCGGCAGTAGTGATCGT 62.285 60.000 29.42 0.00 0.00 3.73
2343 7170 1.589993 CTGGCGGCAGTAGTGATCG 60.590 63.158 29.42 2.52 0.00 3.69
2344 7171 0.249238 CTCTGGCGGCAGTAGTGATC 60.249 60.000 34.57 0.00 0.00 2.92
2345 7172 1.819229 CTCTGGCGGCAGTAGTGAT 59.181 57.895 34.57 0.00 0.00 3.06
2346 7173 3.006756 GCTCTGGCGGCAGTAGTGA 62.007 63.158 34.57 17.20 0.00 3.41
2347 7174 2.510238 GCTCTGGCGGCAGTAGTG 60.510 66.667 34.57 23.49 0.00 2.74
2358 7185 4.838486 GTCGACGGCTCGCTCTGG 62.838 72.222 0.00 0.00 39.96 3.86
2395 7222 3.014085 TAAAGCCGGCTCCGACAGG 62.014 63.158 32.93 0.00 42.83 4.00
2396 7223 1.810030 GTAAAGCCGGCTCCGACAG 60.810 63.158 32.93 0.00 42.83 3.51
2397 7224 2.263540 GTAAAGCCGGCTCCGACA 59.736 61.111 32.93 10.48 42.83 4.35
2398 7225 2.510918 GGTAAAGCCGGCTCCGAC 60.511 66.667 32.93 25.78 42.83 4.79
2399 7226 2.288025 AAGGTAAAGCCGGCTCCGA 61.288 57.895 32.93 15.57 43.70 4.55
2400 7227 2.106683 CAAGGTAAAGCCGGCTCCG 61.107 63.158 32.93 11.24 43.70 4.63
2401 7228 1.002502 ACAAGGTAAAGCCGGCTCC 60.003 57.895 32.93 26.75 43.70 4.70
2402 7229 1.359459 CGACAAGGTAAAGCCGGCTC 61.359 60.000 32.93 18.07 43.70 4.70
2403 7230 1.375523 CGACAAGGTAAAGCCGGCT 60.376 57.895 27.08 27.08 43.70 5.52
2404 7231 0.743345 ATCGACAAGGTAAAGCCGGC 60.743 55.000 21.89 21.89 43.70 6.13
2405 7232 2.589798 TATCGACAAGGTAAAGCCGG 57.410 50.000 0.00 0.00 43.70 6.13
2406 7233 2.280708 CGTTATCGACAAGGTAAAGCCG 59.719 50.000 0.00 0.00 40.04 5.52
2407 7234 2.606272 CCGTTATCGACAAGGTAAAGCC 59.394 50.000 0.00 0.00 39.71 4.35
2408 7235 2.030091 GCCGTTATCGACAAGGTAAAGC 59.970 50.000 0.00 0.00 39.71 3.51
2409 7236 3.518590 AGCCGTTATCGACAAGGTAAAG 58.481 45.455 0.00 0.00 39.71 1.85
2410 7237 3.598019 AGCCGTTATCGACAAGGTAAA 57.402 42.857 0.00 0.00 39.71 2.01
2411 7238 3.067180 CCTAGCCGTTATCGACAAGGTAA 59.933 47.826 0.00 0.00 39.71 2.85
2412 7239 2.620115 CCTAGCCGTTATCGACAAGGTA 59.380 50.000 0.00 0.00 39.71 3.08
2413 7240 1.407979 CCTAGCCGTTATCGACAAGGT 59.592 52.381 0.00 0.00 39.71 3.50
2414 7241 1.679680 TCCTAGCCGTTATCGACAAGG 59.320 52.381 0.00 0.00 39.71 3.61
2415 7242 3.181489 ACTTCCTAGCCGTTATCGACAAG 60.181 47.826 0.00 0.00 39.71 3.16
2416 7243 2.756760 ACTTCCTAGCCGTTATCGACAA 59.243 45.455 0.00 0.00 39.71 3.18
2417 7244 2.357009 GACTTCCTAGCCGTTATCGACA 59.643 50.000 0.00 0.00 39.71 4.35
2418 7245 2.617774 AGACTTCCTAGCCGTTATCGAC 59.382 50.000 0.00 0.00 39.71 4.20
2419 7246 2.928334 AGACTTCCTAGCCGTTATCGA 58.072 47.619 0.00 0.00 39.71 3.59
2420 7247 3.630101 GAAGACTTCCTAGCCGTTATCG 58.370 50.000 3.63 0.00 0.00 2.92
2421 7248 3.066481 ACGAAGACTTCCTAGCCGTTATC 59.934 47.826 9.63 0.00 0.00 1.75
2422 7249 3.022406 ACGAAGACTTCCTAGCCGTTAT 58.978 45.455 9.63 0.00 0.00 1.89
2423 7250 2.163010 CACGAAGACTTCCTAGCCGTTA 59.837 50.000 9.63 0.00 0.00 3.18
2424 7251 1.067776 CACGAAGACTTCCTAGCCGTT 60.068 52.381 9.63 0.00 0.00 4.44
2425 7252 0.526662 CACGAAGACTTCCTAGCCGT 59.473 55.000 9.63 0.74 0.00 5.68
2426 7253 0.802607 GCACGAAGACTTCCTAGCCG 60.803 60.000 9.63 0.10 0.00 5.52
2427 7254 0.246635 TGCACGAAGACTTCCTAGCC 59.753 55.000 9.63 0.00 0.00 3.93
2428 7255 1.336887 TGTGCACGAAGACTTCCTAGC 60.337 52.381 13.13 11.00 0.00 3.42
2429 7256 2.724977 TGTGCACGAAGACTTCCTAG 57.275 50.000 13.13 1.28 0.00 3.02
2430 7257 2.930887 GCATGTGCACGAAGACTTCCTA 60.931 50.000 13.13 0.00 41.59 2.94
2431 7258 1.800805 CATGTGCACGAAGACTTCCT 58.199 50.000 13.13 0.00 0.00 3.36
2432 7259 0.166814 GCATGTGCACGAAGACTTCC 59.833 55.000 13.13 0.00 41.59 3.46
2433 7260 0.166814 GGCATGTGCACGAAGACTTC 59.833 55.000 13.13 5.03 44.36 3.01
2434 7261 0.534877 TGGCATGTGCACGAAGACTT 60.535 50.000 13.13 0.00 44.36 3.01
2435 7262 0.321919 ATGGCATGTGCACGAAGACT 60.322 50.000 13.13 0.00 44.36 3.24
2436 7263 1.368641 TATGGCATGTGCACGAAGAC 58.631 50.000 13.13 7.14 44.36 3.01
2437 7264 2.009051 CTTATGGCATGTGCACGAAGA 58.991 47.619 13.13 0.00 44.36 2.87
2438 7265 1.064505 CCTTATGGCATGTGCACGAAG 59.935 52.381 13.13 5.47 44.36 3.79
2439 7266 1.093972 CCTTATGGCATGTGCACGAA 58.906 50.000 13.13 0.00 44.36 3.85
2440 7267 0.251634 TCCTTATGGCATGTGCACGA 59.748 50.000 13.13 1.58 44.36 4.35
2441 7268 0.378257 GTCCTTATGGCATGTGCACG 59.622 55.000 13.13 0.00 44.36 5.34
2442 7269 0.740737 GGTCCTTATGGCATGTGCAC 59.259 55.000 10.75 10.75 44.36 4.57
2443 7270 0.330941 TGGTCCTTATGGCATGTGCA 59.669 50.000 10.98 0.00 44.36 4.57
2444 7271 1.134946 GTTGGTCCTTATGGCATGTGC 59.865 52.381 10.98 0.00 41.14 4.57
2445 7272 2.164219 GTGTTGGTCCTTATGGCATGTG 59.836 50.000 10.98 2.33 0.00 3.21
2446 7273 2.446435 GTGTTGGTCCTTATGGCATGT 58.554 47.619 10.98 0.00 0.00 3.21
2447 7274 1.750778 GGTGTTGGTCCTTATGGCATG 59.249 52.381 10.98 0.00 0.00 4.06
2448 7275 1.640670 AGGTGTTGGTCCTTATGGCAT 59.359 47.619 4.88 4.88 30.18 4.40
2449 7276 1.072266 AGGTGTTGGTCCTTATGGCA 58.928 50.000 0.00 0.00 30.18 4.92
2450 7277 2.092323 GAAGGTGTTGGTCCTTATGGC 58.908 52.381 0.00 0.00 44.19 4.40
2451 7278 3.433306 TGAAGGTGTTGGTCCTTATGG 57.567 47.619 0.00 0.00 44.19 2.74
2452 7279 3.191371 GCTTGAAGGTGTTGGTCCTTATG 59.809 47.826 0.00 0.00 44.19 1.90
2453 7280 3.421844 GCTTGAAGGTGTTGGTCCTTAT 58.578 45.455 0.00 0.00 44.19 1.73
2454 7281 2.488347 GGCTTGAAGGTGTTGGTCCTTA 60.488 50.000 0.00 0.00 44.19 2.69
2455 7282 1.692411 GCTTGAAGGTGTTGGTCCTT 58.308 50.000 0.00 0.00 46.44 3.36
2456 7283 0.178990 GGCTTGAAGGTGTTGGTCCT 60.179 55.000 0.00 0.00 36.81 3.85
2457 7284 1.515521 CGGCTTGAAGGTGTTGGTCC 61.516 60.000 0.00 0.00 0.00 4.46
2458 7285 1.949257 CGGCTTGAAGGTGTTGGTC 59.051 57.895 0.00 0.00 0.00 4.02
2459 7286 2.193536 GCGGCTTGAAGGTGTTGGT 61.194 57.895 0.00 0.00 0.00 3.67
2460 7287 2.133742 CTGCGGCTTGAAGGTGTTGG 62.134 60.000 0.00 0.00 0.00 3.77
2461 7288 1.283793 CTGCGGCTTGAAGGTGTTG 59.716 57.895 0.00 0.00 0.00 3.33
2462 7289 0.751643 AACTGCGGCTTGAAGGTGTT 60.752 50.000 0.00 0.00 0.00 3.32
2463 7290 1.152963 AACTGCGGCTTGAAGGTGT 60.153 52.632 0.00 0.00 0.00 4.16
2464 7291 1.283793 CAACTGCGGCTTGAAGGTG 59.716 57.895 0.00 0.00 33.55 4.00
2465 7292 1.152963 ACAACTGCGGCTTGAAGGT 60.153 52.632 8.72 0.00 0.00 3.50
2466 7293 1.576421 GACAACTGCGGCTTGAAGG 59.424 57.895 8.72 0.00 0.00 3.46
2467 7294 1.576421 GGACAACTGCGGCTTGAAG 59.424 57.895 8.72 0.00 0.00 3.02
2468 7295 1.896660 GGGACAACTGCGGCTTGAA 60.897 57.895 8.72 0.00 0.00 2.69
2469 7296 2.281484 GGGACAACTGCGGCTTGA 60.281 61.111 8.72 0.00 0.00 3.02
2470 7297 2.281761 AGGGACAACTGCGGCTTG 60.282 61.111 0.00 0.53 0.00 4.01
2471 7298 2.281761 CAGGGACAACTGCGGCTT 60.282 61.111 0.00 0.00 0.00 4.35
2472 7299 3.120086 AACAGGGACAACTGCGGCT 62.120 57.895 0.00 0.00 42.21 5.52
2473 7300 2.594592 AACAGGGACAACTGCGGC 60.595 61.111 0.00 0.00 42.21 6.53
2474 7301 0.817634 TTCAACAGGGACAACTGCGG 60.818 55.000 0.00 0.00 42.21 5.69
2475 7302 0.307760 GTTCAACAGGGACAACTGCG 59.692 55.000 0.00 0.00 42.21 5.18
2476 7303 0.668535 GGTTCAACAGGGACAACTGC 59.331 55.000 0.00 0.00 42.21 4.40
2477 7304 1.133792 AGGGTTCAACAGGGACAACTG 60.134 52.381 0.00 0.00 44.03 3.16
2478 7305 1.222567 AGGGTTCAACAGGGACAACT 58.777 50.000 0.00 0.00 0.00 3.16
2479 7306 1.681264 CAAGGGTTCAACAGGGACAAC 59.319 52.381 0.00 0.00 0.00 3.32
2480 7307 2.026905 GCAAGGGTTCAACAGGGACAA 61.027 52.381 0.00 0.00 0.00 3.18
2481 7308 0.467290 GCAAGGGTTCAACAGGGACA 60.467 55.000 0.00 0.00 0.00 4.02
2482 7309 0.467290 TGCAAGGGTTCAACAGGGAC 60.467 55.000 0.00 0.00 0.00 4.46
2483 7310 0.482446 ATGCAAGGGTTCAACAGGGA 59.518 50.000 0.00 0.00 0.00 4.20
2484 7311 2.094675 CTATGCAAGGGTTCAACAGGG 58.905 52.381 0.00 0.00 0.00 4.45
2485 7312 3.071874 TCTATGCAAGGGTTCAACAGG 57.928 47.619 0.00 0.00 0.00 4.00
2486 7313 6.057533 TCATATCTATGCAAGGGTTCAACAG 58.942 40.000 0.00 0.00 33.76 3.16
2487 7314 6.000246 TCATATCTATGCAAGGGTTCAACA 58.000 37.500 0.00 0.00 33.76 3.33
2488 7315 6.514048 GCTTCATATCTATGCAAGGGTTCAAC 60.514 42.308 0.00 0.00 33.76 3.18
2489 7316 5.532406 GCTTCATATCTATGCAAGGGTTCAA 59.468 40.000 0.00 0.00 33.76 2.69
2490 7317 5.065914 GCTTCATATCTATGCAAGGGTTCA 58.934 41.667 0.00 0.00 33.76 3.18
2491 7318 5.049129 GTGCTTCATATCTATGCAAGGGTTC 60.049 44.000 0.00 0.00 35.34 3.62
2492 7319 4.823989 GTGCTTCATATCTATGCAAGGGTT 59.176 41.667 0.00 0.00 35.34 4.11
2493 7320 4.392940 GTGCTTCATATCTATGCAAGGGT 58.607 43.478 0.00 0.00 35.34 4.34
2494 7321 3.755378 GGTGCTTCATATCTATGCAAGGG 59.245 47.826 0.00 0.00 35.34 3.95
2495 7322 4.392047 TGGTGCTTCATATCTATGCAAGG 58.608 43.478 0.00 0.00 35.34 3.61
2496 7323 6.381481 TTTGGTGCTTCATATCTATGCAAG 57.619 37.500 0.00 0.00 35.34 4.01
2497 7324 6.774170 AGATTTGGTGCTTCATATCTATGCAA 59.226 34.615 0.00 0.00 34.99 4.08
2498 7325 6.301486 AGATTTGGTGCTTCATATCTATGCA 58.699 36.000 9.60 0.00 34.99 3.96
2499 7326 6.429078 TGAGATTTGGTGCTTCATATCTATGC 59.571 38.462 10.71 0.00 36.21 3.14
2500 7327 7.094890 GGTGAGATTTGGTGCTTCATATCTATG 60.095 40.741 10.71 0.00 36.21 2.23
2501 7328 6.939163 GGTGAGATTTGGTGCTTCATATCTAT 59.061 38.462 10.71 0.00 36.21 1.98
2502 7329 6.126796 TGGTGAGATTTGGTGCTTCATATCTA 60.127 38.462 10.71 0.00 36.21 1.98
2503 7330 5.128919 GGTGAGATTTGGTGCTTCATATCT 58.871 41.667 10.59 10.59 37.87 1.98
2504 7331 4.883585 TGGTGAGATTTGGTGCTTCATATC 59.116 41.667 0.00 0.00 0.00 1.63
2505 7332 4.641989 GTGGTGAGATTTGGTGCTTCATAT 59.358 41.667 0.00 0.00 0.00 1.78
2506 7333 4.009675 GTGGTGAGATTTGGTGCTTCATA 58.990 43.478 0.00 0.00 0.00 2.15
2507 7334 2.821969 GTGGTGAGATTTGGTGCTTCAT 59.178 45.455 0.00 0.00 0.00 2.57
2508 7335 2.229792 GTGGTGAGATTTGGTGCTTCA 58.770 47.619 0.00 0.00 0.00 3.02
2509 7336 2.030805 GTGTGGTGAGATTTGGTGCTTC 60.031 50.000 0.00 0.00 0.00 3.86
2510 7337 1.956477 GTGTGGTGAGATTTGGTGCTT 59.044 47.619 0.00 0.00 0.00 3.91
2511 7338 1.133823 TGTGTGGTGAGATTTGGTGCT 60.134 47.619 0.00 0.00 0.00 4.40
2512 7339 1.317613 TGTGTGGTGAGATTTGGTGC 58.682 50.000 0.00 0.00 0.00 5.01
2513 7340 2.687425 TGTTGTGTGGTGAGATTTGGTG 59.313 45.455 0.00 0.00 0.00 4.17
2514 7341 3.011566 TGTTGTGTGGTGAGATTTGGT 57.988 42.857 0.00 0.00 0.00 3.67
2515 7342 4.589216 ATTGTTGTGTGGTGAGATTTGG 57.411 40.909 0.00 0.00 0.00 3.28
2516 7343 6.420604 GGTTTATTGTTGTGTGGTGAGATTTG 59.579 38.462 0.00 0.00 0.00 2.32
2517 7344 6.462347 GGGTTTATTGTTGTGTGGTGAGATTT 60.462 38.462 0.00 0.00 0.00 2.17
2518 7345 5.010617 GGGTTTATTGTTGTGTGGTGAGATT 59.989 40.000 0.00 0.00 0.00 2.40
2519 7346 4.522789 GGGTTTATTGTTGTGTGGTGAGAT 59.477 41.667 0.00 0.00 0.00 2.75
2520 7347 3.886505 GGGTTTATTGTTGTGTGGTGAGA 59.113 43.478 0.00 0.00 0.00 3.27
2521 7348 3.634448 TGGGTTTATTGTTGTGTGGTGAG 59.366 43.478 0.00 0.00 0.00 3.51
2522 7349 3.381908 GTGGGTTTATTGTTGTGTGGTGA 59.618 43.478 0.00 0.00 0.00 4.02
2523 7350 3.712187 GTGGGTTTATTGTTGTGTGGTG 58.288 45.455 0.00 0.00 0.00 4.17
2524 7351 2.359531 CGTGGGTTTATTGTTGTGTGGT 59.640 45.455 0.00 0.00 0.00 4.16
2525 7352 2.359531 ACGTGGGTTTATTGTTGTGTGG 59.640 45.455 0.00 0.00 0.00 4.17
2526 7353 3.065510 TGACGTGGGTTTATTGTTGTGTG 59.934 43.478 0.00 0.00 0.00 3.82
2527 7354 3.065648 GTGACGTGGGTTTATTGTTGTGT 59.934 43.478 0.00 0.00 0.00 3.72
2528 7355 3.314080 AGTGACGTGGGTTTATTGTTGTG 59.686 43.478 0.00 0.00 0.00 3.33
2529 7356 3.314080 CAGTGACGTGGGTTTATTGTTGT 59.686 43.478 0.00 0.00 0.00 3.32
2530 7357 3.851838 GCAGTGACGTGGGTTTATTGTTG 60.852 47.826 0.00 0.00 0.00 3.33
2531 7358 2.292292 GCAGTGACGTGGGTTTATTGTT 59.708 45.455 0.00 0.00 0.00 2.83
2532 7359 1.877443 GCAGTGACGTGGGTTTATTGT 59.123 47.619 0.00 0.00 0.00 2.71
2533 7360 1.199097 GGCAGTGACGTGGGTTTATTG 59.801 52.381 0.00 0.00 0.00 1.90
2534 7361 1.530323 GGCAGTGACGTGGGTTTATT 58.470 50.000 0.00 0.00 0.00 1.40
2535 7362 0.322187 GGGCAGTGACGTGGGTTTAT 60.322 55.000 0.00 0.00 0.00 1.40
2536 7363 1.071814 GGGCAGTGACGTGGGTTTA 59.928 57.895 0.00 0.00 0.00 2.01
2537 7364 2.203294 GGGCAGTGACGTGGGTTT 60.203 61.111 0.00 0.00 0.00 3.27
2538 7365 4.265056 GGGGCAGTGACGTGGGTT 62.265 66.667 0.00 0.00 0.00 4.11
2540 7367 4.263572 TTGGGGCAGTGACGTGGG 62.264 66.667 0.00 0.00 0.00 4.61
2541 7368 2.669569 CTTGGGGCAGTGACGTGG 60.670 66.667 0.00 0.00 0.00 4.94
2542 7369 2.669569 CCTTGGGGCAGTGACGTG 60.670 66.667 0.00 0.00 0.00 4.49
2543 7370 2.847234 TCCTTGGGGCAGTGACGT 60.847 61.111 0.00 0.00 0.00 4.34
2544 7371 2.046892 CTCCTTGGGGCAGTGACG 60.047 66.667 0.00 0.00 0.00 4.35
2545 7372 1.003233 GTCTCCTTGGGGCAGTGAC 60.003 63.158 0.00 0.00 0.00 3.67
2546 7373 2.583441 CGTCTCCTTGGGGCAGTGA 61.583 63.158 0.00 0.00 0.00 3.41
2547 7374 2.046892 CGTCTCCTTGGGGCAGTG 60.047 66.667 0.00 0.00 0.00 3.66
2548 7375 2.741878 TACCGTCTCCTTGGGGCAGT 62.742 60.000 0.00 0.00 0.00 4.40
2549 7376 1.550130 TTACCGTCTCCTTGGGGCAG 61.550 60.000 0.00 0.00 0.00 4.85
2550 7377 1.128809 TTTACCGTCTCCTTGGGGCA 61.129 55.000 0.00 0.00 0.00 5.36
2551 7378 0.037160 TTTTACCGTCTCCTTGGGGC 59.963 55.000 0.00 0.00 0.00 5.80
2552 7379 2.572209 TTTTTACCGTCTCCTTGGGG 57.428 50.000 0.00 0.00 0.00 4.96
2553 7380 3.689649 CAGATTTTTACCGTCTCCTTGGG 59.310 47.826 0.00 0.00 0.00 4.12
2554 7381 3.127030 GCAGATTTTTACCGTCTCCTTGG 59.873 47.826 0.00 0.00 0.00 3.61
2555 7382 4.003648 AGCAGATTTTTACCGTCTCCTTG 58.996 43.478 0.00 0.00 0.00 3.61
2556 7383 4.254492 GAGCAGATTTTTACCGTCTCCTT 58.746 43.478 0.00 0.00 0.00 3.36
2557 7384 3.369576 GGAGCAGATTTTTACCGTCTCCT 60.370 47.826 0.00 0.00 36.75 3.69
2558 7385 2.937149 GGAGCAGATTTTTACCGTCTCC 59.063 50.000 0.00 0.00 33.09 3.71
2559 7386 2.603560 CGGAGCAGATTTTTACCGTCTC 59.396 50.000 0.00 0.00 36.38 3.36
2560 7387 2.618053 CGGAGCAGATTTTTACCGTCT 58.382 47.619 0.00 0.00 36.38 4.18
2561 7388 1.664151 CCGGAGCAGATTTTTACCGTC 59.336 52.381 0.00 0.00 38.92 4.79
2562 7389 1.276989 TCCGGAGCAGATTTTTACCGT 59.723 47.619 0.00 0.00 38.92 4.83
2563 7390 1.933853 CTCCGGAGCAGATTTTTACCG 59.066 52.381 20.67 0.00 40.03 4.02
2580 7407 1.428620 GTAGTCGACACGGAGCTCC 59.571 63.158 23.79 23.79 0.00 4.70
2581 7408 1.060622 CGTAGTCGACACGGAGCTC 59.939 63.158 23.75 4.71 39.71 4.09
2582 7409 1.670406 ACGTAGTCGACACGGAGCT 60.670 57.895 29.98 15.69 43.59 4.09
2583 7410 1.511464 CACGTAGTCGACACGGAGC 60.511 63.158 29.98 11.26 41.61 4.70
2584 7411 1.511464 GCACGTAGTCGACACGGAG 60.511 63.158 29.98 24.69 41.61 4.63
2585 7412 2.178892 CTGCACGTAGTCGACACGGA 62.179 60.000 29.98 18.82 41.61 4.69
2586 7413 1.796355 CTGCACGTAGTCGACACGG 60.796 63.158 29.98 22.92 41.61 4.94
2587 7414 1.058590 GTCTGCACGTAGTCGACACG 61.059 60.000 27.26 27.26 41.61 4.49
2588 7415 1.058590 CGTCTGCACGTAGTCGACAC 61.059 60.000 19.50 12.61 41.61 3.67
2589 7416 1.205820 CGTCTGCACGTAGTCGACA 59.794 57.895 19.50 0.48 41.61 4.35
2590 7417 0.110509 TTCGTCTGCACGTAGTCGAC 60.111 55.000 7.70 7.70 46.76 4.20
2591 7418 0.800631 ATTCGTCTGCACGTAGTCGA 59.199 50.000 4.00 4.00 46.76 4.20
2592 7419 0.907837 CATTCGTCTGCACGTAGTCG 59.092 55.000 0.00 0.00 46.76 4.18
2593 7420 2.257974 TCATTCGTCTGCACGTAGTC 57.742 50.000 0.00 0.00 46.76 2.59
2594 7421 2.717580 TTCATTCGTCTGCACGTAGT 57.282 45.000 0.00 0.00 46.76 2.73
2595 7422 4.170125 GAATTCATTCGTCTGCACGTAG 57.830 45.455 0.00 0.00 46.76 3.51
2607 7434 6.317391 AGTTTTGATCCTCCTCGAATTCATTC 59.683 38.462 6.22 0.00 0.00 2.67
2608 7435 6.183347 AGTTTTGATCCTCCTCGAATTCATT 58.817 36.000 6.22 0.00 0.00 2.57
2609 7436 5.749462 AGTTTTGATCCTCCTCGAATTCAT 58.251 37.500 6.22 0.00 0.00 2.57
2610 7437 5.165961 AGTTTTGATCCTCCTCGAATTCA 57.834 39.130 6.22 0.00 0.00 2.57
2632 7459 8.105097 TGGATTCATTTGAATTTGTCTTACGA 57.895 30.769 7.20 0.00 44.14 3.43
2635 7462 9.076781 TCACTGGATTCATTTGAATTTGTCTTA 57.923 29.630 7.20 0.00 44.14 2.10
2638 7465 8.767478 ATTCACTGGATTCATTTGAATTTGTC 57.233 30.769 7.20 0.00 44.14 3.18
2650 7477 3.054139 CCCTCCAAGATTCACTGGATTCA 60.054 47.826 7.69 0.00 0.00 2.57
2651 7478 3.549794 CCCTCCAAGATTCACTGGATTC 58.450 50.000 7.69 0.00 0.00 2.52
2653 7480 1.849039 CCCCTCCAAGATTCACTGGAT 59.151 52.381 7.69 0.00 0.00 3.41
2654 7481 1.203428 TCCCCTCCAAGATTCACTGGA 60.203 52.381 7.16 7.16 0.00 3.86
2655 7482 1.211457 CTCCCCTCCAAGATTCACTGG 59.789 57.143 0.00 0.00 0.00 4.00
2663 7787 2.118403 ACAAACTCTCCCCTCCAAGA 57.882 50.000 0.00 0.00 0.00 3.02
2667 7791 1.003696 CCTGAACAAACTCTCCCCTCC 59.996 57.143 0.00 0.00 0.00 4.30
2668 7792 1.700186 ACCTGAACAAACTCTCCCCTC 59.300 52.381 0.00 0.00 0.00 4.30
2681 7805 0.185175 AGTCCACCCCAAACCTGAAC 59.815 55.000 0.00 0.00 0.00 3.18
2682 7806 1.822425 TAGTCCACCCCAAACCTGAA 58.178 50.000 0.00 0.00 0.00 3.02
2683 7807 2.053747 ATAGTCCACCCCAAACCTGA 57.946 50.000 0.00 0.00 0.00 3.86
2685 7809 1.835531 CGTATAGTCCACCCCAAACCT 59.164 52.381 0.00 0.00 0.00 3.50
2698 7822 5.009010 CCAACAACCGGTATAGACGTATAGT 59.991 44.000 8.00 0.00 0.00 2.12
2699 7823 5.239306 TCCAACAACCGGTATAGACGTATAG 59.761 44.000 8.00 0.00 0.00 1.31
2700 7824 5.008613 GTCCAACAACCGGTATAGACGTATA 59.991 44.000 8.00 0.00 0.00 1.47
2701 7825 3.953612 TCCAACAACCGGTATAGACGTAT 59.046 43.478 8.00 0.00 0.00 3.06
2702 7826 3.128589 GTCCAACAACCGGTATAGACGTA 59.871 47.826 8.00 0.00 0.00 3.57
2703 7827 2.094545 GTCCAACAACCGGTATAGACGT 60.095 50.000 8.00 0.00 0.00 4.34
2704 7828 2.094597 TGTCCAACAACCGGTATAGACG 60.095 50.000 8.00 0.00 0.00 4.18
2705 7829 3.194116 TCTGTCCAACAACCGGTATAGAC 59.806 47.826 8.00 11.65 0.00 2.59
2706 7830 3.433343 TCTGTCCAACAACCGGTATAGA 58.567 45.455 8.00 0.47 0.00 1.98
2707 7831 3.880047 TCTGTCCAACAACCGGTATAG 57.120 47.619 8.00 3.36 0.00 1.31
2712 7836 3.670625 TCTAATTCTGTCCAACAACCGG 58.329 45.455 0.00 0.00 0.00 5.28
2718 7842 5.245531 TGTGTCCATCTAATTCTGTCCAAC 58.754 41.667 0.00 0.00 0.00 3.77
2739 7863 6.403866 TGCTTCCACATGACTAAATTTTGT 57.596 33.333 4.91 4.91 0.00 2.83
2761 7885 8.279695 TGTGTTTTCATTGTCGTGATATTTTG 57.720 30.769 0.00 0.00 0.00 2.44
2805 7930 8.786826 AATTTGTTTCTGATATAGTGGTTCGA 57.213 30.769 0.00 0.00 0.00 3.71
2819 7944 7.969387 TTGACTCGAAAGAAATTTGTTTCTG 57.031 32.000 28.09 23.38 40.81 3.02
2836 7961 3.936902 TCTTTTTCGGTGTTTGACTCG 57.063 42.857 0.00 0.00 0.00 4.18
2837 7962 7.190871 TGTAATTCTTTTTCGGTGTTTGACTC 58.809 34.615 0.00 0.00 0.00 3.36
2840 7965 8.934507 ATTTGTAATTCTTTTTCGGTGTTTGA 57.065 26.923 0.00 0.00 0.00 2.69
2841 7966 9.419737 CAATTTGTAATTCTTTTTCGGTGTTTG 57.580 29.630 0.00 0.00 0.00 2.93
2843 7968 8.934507 TCAATTTGTAATTCTTTTTCGGTGTT 57.065 26.923 0.00 0.00 0.00 3.32
2854 7979 9.598517 TGAGCAAACTTTTCAATTTGTAATTCT 57.401 25.926 0.00 0.00 37.96 2.40
2855 7980 9.853921 CTGAGCAAACTTTTCAATTTGTAATTC 57.146 29.630 0.00 0.00 37.96 2.17
2866 7991 4.207165 ACTTAGGCTGAGCAAACTTTTCA 58.793 39.130 6.82 0.00 0.00 2.69
2901 8026 3.371102 TCAGAAAACTCGACTGGTCTG 57.629 47.619 0.00 3.32 35.01 3.51
2905 8030 4.500837 CGTATCATCAGAAAACTCGACTGG 59.499 45.833 0.00 0.00 33.19 4.00
2933 8059 3.895232 TGAAGAGGGCACTACTTGATC 57.105 47.619 5.54 0.00 0.00 2.92
2936 8062 6.115446 TCAATAATGAAGAGGGCACTACTTG 58.885 40.000 5.54 0.00 30.99 3.16
2952 8078 6.925610 TCCACGGAGAAAAGATCAATAATG 57.074 37.500 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.