Multiple sequence alignment - TraesCS1D01G340100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G340100 chr1D 100.000 4428 0 0 1 4428 430225513 430229940 0.000000e+00 8178
1 TraesCS1D01G340100 chr1D 93.832 1670 95 8 1036 2700 159136640 159138306 0.000000e+00 2507
2 TraesCS1D01G340100 chr1D 89.800 1049 79 18 2699 3735 341028343 341027311 0.000000e+00 1319
3 TraesCS1D01G340100 chr1D 90.835 862 77 2 2699 3559 465901511 465900651 0.000000e+00 1153
4 TraesCS1D01G340100 chr1D 92.044 729 49 5 1 729 185646476 185647195 0.000000e+00 1016
5 TraesCS1D01G340100 chr1D 87.538 329 30 3 729 1046 465901835 465901507 1.950000e-98 370
6 TraesCS1D01G340100 chr4D 94.934 1658 77 7 1047 2698 211393924 211392268 0.000000e+00 2590
7 TraesCS1D01G340100 chr4D 94.167 1663 84 10 1047 2699 275665165 275663506 0.000000e+00 2521
8 TraesCS1D01G340100 chr4D 93.397 1666 103 7 1040 2699 196634153 196635817 0.000000e+00 2460
9 TraesCS1D01G340100 chr4D 90.970 742 35 4 1 712 211395062 211394323 0.000000e+00 970
10 TraesCS1D01G340100 chr4D 85.154 714 80 14 1 712 182969797 182970486 0.000000e+00 708
11 TraesCS1D01G340100 chr4D 86.254 662 78 2 1 662 141823643 141824291 0.000000e+00 706
12 TraesCS1D01G340100 chr3A 93.848 1658 95 7 1047 2699 360068689 360067034 0.000000e+00 2490
13 TraesCS1D01G340100 chr3A 88.693 1079 90 9 2700 3748 127072646 127073722 0.000000e+00 1288
14 TraesCS1D01G340100 chr3A 90.703 882 80 2 2700 3580 127857301 127856421 0.000000e+00 1173
15 TraesCS1D01G340100 chr3A 85.890 730 78 11 1 723 355241163 355241874 0.000000e+00 754
16 TraesCS1D01G340100 chr3A 86.409 596 57 5 1 574 270632913 270632320 8.080000e-177 630
17 TraesCS1D01G340100 chr3A 95.312 64 3 0 3837 3900 127074026 127074089 7.840000e-18 102
18 TraesCS1D01G340100 chr3D 93.803 1662 92 7 1047 2699 254704551 254706210 0.000000e+00 2488
19 TraesCS1D01G340100 chr3D 90.545 973 83 7 2700 3668 120144108 120145075 0.000000e+00 1279
20 TraesCS1D01G340100 chr3D 91.497 882 72 1 2699 3580 121340346 121339468 0.000000e+00 1210
21 TraesCS1D01G340100 chr3D 92.006 713 43 10 1 702 254711686 254712395 0.000000e+00 989
22 TraesCS1D01G340100 chr3D 88.450 329 26 5 729 1046 120143784 120144111 1.930000e-103 387
23 TraesCS1D01G340100 chr5B 93.731 1659 93 9 1047 2698 267187917 267189571 0.000000e+00 2477
24 TraesCS1D01G340100 chr5B 87.293 968 88 13 2812 3748 507801316 507800353 0.000000e+00 1074
25 TraesCS1D01G340100 chr5B 89.320 412 35 6 3904 4312 655194288 655193883 3.950000e-140 508
26 TraesCS1D01G340100 chr5B 88.073 327 28 3 729 1044 507801728 507801402 1.160000e-100 377
27 TraesCS1D01G340100 chr5B 94.118 68 3 1 3837 3903 507798268 507798201 7.840000e-18 102
28 TraesCS1D01G340100 chr5B 93.878 49 3 0 3768 3816 507798458 507798410 1.710000e-09 75
29 TraesCS1D01G340100 chr7D 93.667 1658 96 8 1047 2698 331768940 331767286 0.000000e+00 2471
30 TraesCS1D01G340100 chr7D 89.806 412 33 6 3904 4311 29309004 29308598 1.830000e-143 520
31 TraesCS1D01G340100 chr5D 93.539 1656 103 4 1047 2699 311426670 311428324 0.000000e+00 2462
32 TraesCS1D01G340100 chr5D 90.845 710 50 7 1 709 298672092 298672787 0.000000e+00 937
33 TraesCS1D01G340100 chr5D 86.667 735 75 12 1 735 311431109 311431820 0.000000e+00 793
34 TraesCS1D01G340100 chr5D 91.748 412 28 4 3904 4311 510564268 510563859 6.430000e-158 568
35 TraesCS1D01G340100 chr6D 88.497 1078 93 17 2699 3748 452126374 452125300 0.000000e+00 1275
36 TraesCS1D01G340100 chr6D 88.205 585 49 1 3 567 283599719 283600303 0.000000e+00 680
37 TraesCS1D01G340100 chr6D 84.586 532 58 13 44 573 227913413 227912904 1.420000e-139 507
38 TraesCS1D01G340100 chr6D 89.362 329 24 3 729 1046 452126698 452126370 1.920000e-108 403
39 TraesCS1D01G340100 chr6D 76.064 376 60 15 3 376 217731202 217730855 7.620000e-38 169
40 TraesCS1D01G340100 chr6D 84.028 144 9 8 3760 3903 452125240 452125111 4.650000e-25 126
41 TraesCS1D01G340100 chr3B 89.247 1023 80 18 2699 3699 146980837 146979823 0.000000e+00 1253
42 TraesCS1D01G340100 chr3B 91.226 889 67 5 2699 3580 173006205 173005321 0.000000e+00 1199
43 TraesCS1D01G340100 chr3B 88.450 329 27 4 729 1046 172213107 172213435 1.930000e-103 387
44 TraesCS1D01G340100 chr3B 87.842 329 29 5 729 1046 172171815 172172143 4.180000e-100 375
45 TraesCS1D01G340100 chr3B 87.805 328 29 4 730 1046 146981160 146980833 1.500000e-99 374
46 TraesCS1D01G340100 chr1B 88.656 1049 91 18 2699 3735 456712630 456711598 0.000000e+00 1253
47 TraesCS1D01G340100 chr1B 89.058 329 25 3 729 1046 456712954 456712626 8.920000e-107 398
48 TraesCS1D01G340100 chr1B 87.538 329 30 3 729 1046 642700174 642699846 1.950000e-98 370
49 TraesCS1D01G340100 chr1A 91.644 730 47 3 1 730 260777309 260778024 0.000000e+00 998
50 TraesCS1D01G340100 chr1A 86.420 810 76 24 2941 3735 440712901 440712111 0.000000e+00 856
51 TraesCS1D01G340100 chr1A 87.566 571 50 13 3 573 355817340 355817889 3.730000e-180 641
52 TraesCS1D01G340100 chr1A 85.114 571 64 10 3 573 349864046 349864595 8.310000e-157 564
53 TraesCS1D01G340100 chr1A 80.778 463 75 13 3 464 176195478 176195927 2.530000e-92 350
54 TraesCS1D01G340100 chr4A 87.397 730 67 18 3 732 274980133 274980837 0.000000e+00 815
55 TraesCS1D01G340100 chr4A 90.754 411 30 6 3904 4311 191162649 191162244 3.900000e-150 542
56 TraesCS1D01G340100 chr4A 90.722 97 9 0 4331 4427 567485762 567485858 3.590000e-26 130
57 TraesCS1D01G340100 chr5A 86.008 729 78 16 5 731 243203657 243202951 0.000000e+00 760
58 TraesCS1D01G340100 chr2B 86.125 591 61 4 3 574 484308800 484308212 6.290000e-173 617
59 TraesCS1D01G340100 chr2D 91.525 413 27 6 3904 4311 44611669 44612078 2.990000e-156 562
60 TraesCS1D01G340100 chr2D 83.913 230 29 8 2 229 334198811 334199034 3.470000e-51 213
61 TraesCS1D01G340100 chr6A 91.304 414 31 3 3904 4313 74975750 74975338 1.080000e-155 560
62 TraesCS1D01G340100 chr2A 89.855 414 35 5 3904 4314 27370190 27369781 3.920000e-145 525
63 TraesCS1D01G340100 chr2A 89.294 411 38 4 3904 4311 679465479 679465886 1.100000e-140 510
64 TraesCS1D01G340100 chr2A 88.889 414 38 5 3904 4311 691764740 691764329 1.840000e-138 503
65 TraesCS1D01G340100 chr6B 80.872 596 88 10 3 573 540111395 540110801 3.140000e-121 446


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G340100 chr1D 430225513 430229940 4427 False 8178.000000 8178 100.000000 1 4428 1 chr1D.!!$F3 4427
1 TraesCS1D01G340100 chr1D 159136640 159138306 1666 False 2507.000000 2507 93.832000 1036 2700 1 chr1D.!!$F1 1664
2 TraesCS1D01G340100 chr1D 341027311 341028343 1032 True 1319.000000 1319 89.800000 2699 3735 1 chr1D.!!$R1 1036
3 TraesCS1D01G340100 chr1D 185646476 185647195 719 False 1016.000000 1016 92.044000 1 729 1 chr1D.!!$F2 728
4 TraesCS1D01G340100 chr1D 465900651 465901835 1184 True 761.500000 1153 89.186500 729 3559 2 chr1D.!!$R2 2830
5 TraesCS1D01G340100 chr4D 275663506 275665165 1659 True 2521.000000 2521 94.167000 1047 2699 1 chr4D.!!$R1 1652
6 TraesCS1D01G340100 chr4D 196634153 196635817 1664 False 2460.000000 2460 93.397000 1040 2699 1 chr4D.!!$F3 1659
7 TraesCS1D01G340100 chr4D 211392268 211395062 2794 True 1780.000000 2590 92.952000 1 2698 2 chr4D.!!$R2 2697
8 TraesCS1D01G340100 chr4D 182969797 182970486 689 False 708.000000 708 85.154000 1 712 1 chr4D.!!$F2 711
9 TraesCS1D01G340100 chr4D 141823643 141824291 648 False 706.000000 706 86.254000 1 662 1 chr4D.!!$F1 661
10 TraesCS1D01G340100 chr3A 360067034 360068689 1655 True 2490.000000 2490 93.848000 1047 2699 1 chr3A.!!$R3 1652
11 TraesCS1D01G340100 chr3A 127856421 127857301 880 True 1173.000000 1173 90.703000 2700 3580 1 chr3A.!!$R1 880
12 TraesCS1D01G340100 chr3A 355241163 355241874 711 False 754.000000 754 85.890000 1 723 1 chr3A.!!$F1 722
13 TraesCS1D01G340100 chr3A 127072646 127074089 1443 False 695.000000 1288 92.002500 2700 3900 2 chr3A.!!$F2 1200
14 TraesCS1D01G340100 chr3A 270632320 270632913 593 True 630.000000 630 86.409000 1 574 1 chr3A.!!$R2 573
15 TraesCS1D01G340100 chr3D 254704551 254706210 1659 False 2488.000000 2488 93.803000 1047 2699 1 chr3D.!!$F1 1652
16 TraesCS1D01G340100 chr3D 121339468 121340346 878 True 1210.000000 1210 91.497000 2699 3580 1 chr3D.!!$R1 881
17 TraesCS1D01G340100 chr3D 254711686 254712395 709 False 989.000000 989 92.006000 1 702 1 chr3D.!!$F2 701
18 TraesCS1D01G340100 chr3D 120143784 120145075 1291 False 833.000000 1279 89.497500 729 3668 2 chr3D.!!$F3 2939
19 TraesCS1D01G340100 chr5B 267187917 267189571 1654 False 2477.000000 2477 93.731000 1047 2698 1 chr5B.!!$F1 1651
20 TraesCS1D01G340100 chr5B 507798201 507801728 3527 True 407.000000 1074 90.840500 729 3903 4 chr5B.!!$R2 3174
21 TraesCS1D01G340100 chr7D 331767286 331768940 1654 True 2471.000000 2471 93.667000 1047 2698 1 chr7D.!!$R2 1651
22 TraesCS1D01G340100 chr5D 311426670 311431820 5150 False 1627.500000 2462 90.103000 1 2699 2 chr5D.!!$F2 2698
23 TraesCS1D01G340100 chr5D 298672092 298672787 695 False 937.000000 937 90.845000 1 709 1 chr5D.!!$F1 708
24 TraesCS1D01G340100 chr6D 283599719 283600303 584 False 680.000000 680 88.205000 3 567 1 chr6D.!!$F1 564
25 TraesCS1D01G340100 chr6D 452125111 452126698 1587 True 601.333333 1275 87.295667 729 3903 3 chr6D.!!$R3 3174
26 TraesCS1D01G340100 chr6D 227912904 227913413 509 True 507.000000 507 84.586000 44 573 1 chr6D.!!$R2 529
27 TraesCS1D01G340100 chr3B 173005321 173006205 884 True 1199.000000 1199 91.226000 2699 3580 1 chr3B.!!$R1 881
28 TraesCS1D01G340100 chr3B 146979823 146981160 1337 True 813.500000 1253 88.526000 730 3699 2 chr3B.!!$R2 2969
29 TraesCS1D01G340100 chr1B 456711598 456712954 1356 True 825.500000 1253 88.857000 729 3735 2 chr1B.!!$R2 3006
30 TraesCS1D01G340100 chr1A 260777309 260778024 715 False 998.000000 998 91.644000 1 730 1 chr1A.!!$F2 729
31 TraesCS1D01G340100 chr1A 440712111 440712901 790 True 856.000000 856 86.420000 2941 3735 1 chr1A.!!$R1 794
32 TraesCS1D01G340100 chr1A 355817340 355817889 549 False 641.000000 641 87.566000 3 573 1 chr1A.!!$F4 570
33 TraesCS1D01G340100 chr1A 349864046 349864595 549 False 564.000000 564 85.114000 3 573 1 chr1A.!!$F3 570
34 TraesCS1D01G340100 chr4A 274980133 274980837 704 False 815.000000 815 87.397000 3 732 1 chr4A.!!$F1 729
35 TraesCS1D01G340100 chr5A 243202951 243203657 706 True 760.000000 760 86.008000 5 731 1 chr5A.!!$R1 726
36 TraesCS1D01G340100 chr2B 484308212 484308800 588 True 617.000000 617 86.125000 3 574 1 chr2B.!!$R1 571
37 TraesCS1D01G340100 chr6B 540110801 540111395 594 True 446.000000 446 80.872000 3 573 1 chr6B.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 5026 0.251354 GCAGATGCTGTCCTCTCCAA 59.749 55.000 0.00 0.0 38.21 3.53 F
923 5679 0.892755 TCAGCTGGAACGATAACGGT 59.107 50.000 15.13 0.0 44.28 4.83 F
1796 6561 1.041437 GGTCCCACCGAGATTCCTAG 58.959 60.000 0.00 0.0 0.00 3.02 F
2707 7489 1.202639 TCGATCCTACAATGCGGCAAT 60.203 47.619 6.82 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 6518 1.066215 CATGATCAACTCGGTGGGACA 60.066 52.381 0.00 0.0 0.00 4.02 R
2707 7489 0.179015 TCGCCTTTGCCAACAAGGTA 60.179 50.000 0.83 0.0 40.61 3.08 R
3097 7879 0.034670 GGCAGGCCTTGAAGATCTGT 60.035 55.000 0.00 0.0 0.00 3.41 R
4138 11067 0.109532 TCGTTGCATCCTGGGTTGAA 59.890 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 4458 1.597027 ACAAAGAGCACGTTCCCCG 60.597 57.895 0.00 0.00 44.03 5.73
37 4477 1.133976 CGGAGGCCAGAATTTGAGGAT 60.134 52.381 5.01 0.00 0.00 3.24
318 4787 1.546476 AGATGTGAAGGTCACCGAGAC 59.454 52.381 5.96 0.00 46.40 3.36
435 4906 2.908940 AGCAGTGCCAGTTGCCAC 60.909 61.111 12.58 0.00 41.17 5.01
552 5026 0.251354 GCAGATGCTGTCCTCTCCAA 59.749 55.000 0.00 0.00 38.21 3.53
594 5068 2.176273 GTGCCTAGAGTGCCGCATG 61.176 63.158 0.00 0.00 33.08 4.06
638 5114 3.019799 TGGTAACTTGTTGCCAAAGGA 57.980 42.857 18.39 0.00 33.72 3.36
723 5210 7.170393 TCTCTTGCTACTTGCTACTTTGATA 57.830 36.000 0.00 0.00 43.37 2.15
746 5233 4.007644 CTCTGCACCGAGGTGGCA 62.008 66.667 22.19 18.12 45.49 4.92
771 5413 2.187946 GCATCAGGGAGGACGTGG 59.812 66.667 0.00 0.00 35.71 4.94
776 5418 2.052690 CAGGGAGGACGTGGTCGAT 61.053 63.158 0.00 0.00 40.62 3.59
777 5419 1.753463 AGGGAGGACGTGGTCGATC 60.753 63.158 0.00 0.00 40.62 3.69
815 5509 2.762887 TGATGCCGAGATCTTGAACTCT 59.237 45.455 11.89 0.00 0.00 3.24
846 5602 4.141287 CACCAATGACCACCTTAAGACAA 58.859 43.478 3.36 0.00 0.00 3.18
851 5607 6.464222 CAATGACCACCTTAAGACAACTCTA 58.536 40.000 3.36 0.00 0.00 2.43
860 5616 1.617322 AGACAACTCTAGTCGGCACA 58.383 50.000 0.00 0.00 40.84 4.57
870 5626 1.602323 GTCGGCACAAACCCATCCA 60.602 57.895 0.00 0.00 0.00 3.41
919 5675 3.270027 CCAATGTCAGCTGGAACGATAA 58.730 45.455 15.13 0.00 34.35 1.75
923 5679 0.892755 TCAGCTGGAACGATAACGGT 59.107 50.000 15.13 0.00 44.28 4.83
933 5689 1.814527 GATAACGGTGGCCTCGACT 59.185 57.895 22.17 12.59 0.00 4.18
988 5749 1.902508 TCGAGCACCCAGAGAAATTCT 59.097 47.619 0.00 0.00 36.25 2.40
1005 5766 3.953712 TTCTAGAAGTTCGGCATGTCA 57.046 42.857 0.00 0.00 0.00 3.58
1017 5778 1.374947 CATGTCACCGTCCAAGGGT 59.625 57.895 0.00 0.00 36.70 4.34
1043 5804 1.622607 TTCTACGGGCCACCAGGATG 61.623 60.000 4.39 0.00 36.89 3.51
1397 6161 4.159693 GTCCAAAACCCAAAGTCAAACTCT 59.840 41.667 0.00 0.00 0.00 3.24
1400 6164 2.736670 ACCCAAAGTCAAACTCTGCT 57.263 45.000 0.00 0.00 0.00 4.24
1450 6214 3.745975 CGAGTTCTTTTGACATAGCCACA 59.254 43.478 0.00 0.00 0.00 4.17
1459 6223 2.025981 TGACATAGCCACAGCCAGAAAT 60.026 45.455 0.00 0.00 41.25 2.17
1518 6282 1.135527 CACCGAGATGGCAATGCAAAT 59.864 47.619 7.79 0.00 43.94 2.32
1537 6301 5.617087 GCAAATTCTCTGTTTCCCTTCGTAC 60.617 44.000 0.00 0.00 0.00 3.67
1565 6329 3.195661 GGTCTTACCGAAATGAGCGATT 58.804 45.455 0.00 0.00 0.00 3.34
1611 6375 4.950205 ACTCTCTGTTTCCCTTCGTAAA 57.050 40.909 0.00 0.00 0.00 2.01
1677 6441 4.762251 GCCTGACCAATTCTCTGTTTACTT 59.238 41.667 0.00 0.00 0.00 2.24
1679 6443 6.128254 GCCTGACCAATTCTCTGTTTACTTAC 60.128 42.308 0.00 0.00 0.00 2.34
1742 6506 3.197983 CCGAGATGAGGTTTTTCCCTAGT 59.802 47.826 0.00 0.00 34.03 2.57
1754 6518 3.689872 TTCCCTAGTCCTAGCACATCT 57.310 47.619 0.00 0.00 31.95 2.90
1796 6561 1.041437 GGTCCCACCGAGATTCCTAG 58.959 60.000 0.00 0.00 0.00 3.02
1840 6605 4.295857 GGTCTCACCGAGTTCTTCTATC 57.704 50.000 0.00 0.00 0.00 2.08
2024 6790 3.770933 CCAAGACATTCCAATCCAACCAT 59.229 43.478 0.00 0.00 0.00 3.55
2092 6859 5.271598 TCATCTTTCCACCATAGCCAAATT 58.728 37.500 0.00 0.00 0.00 1.82
2258 7033 3.699538 GTGGAGTTGAACCAAGGAGTTTT 59.300 43.478 0.00 0.00 39.22 2.43
2286 7061 2.617308 CAAGGAGATCGCCTACTTCGTA 59.383 50.000 19.20 0.00 42.39 3.43
2295 7070 6.485984 AGATCGCCTACTTCGTAAAGATCTAA 59.514 38.462 0.00 0.00 40.93 2.10
2391 7168 2.680352 GAGCCCTCCGTGGACTCA 60.680 66.667 3.76 0.00 38.35 3.41
2461 7238 3.963428 GATAGCACCACCTATCGGAAT 57.037 47.619 0.00 0.00 35.71 3.01
2480 7257 2.459060 TCACGCCAAAAATCTCCGTA 57.541 45.000 0.00 0.00 0.00 4.02
2560 7337 7.636150 TTACTTTCCGCTACTACACTCTTAT 57.364 36.000 0.00 0.00 0.00 1.73
2612 7389 6.486657 ACTTGTGCTAAGTTGCTAAAATCTGA 59.513 34.615 1.75 0.00 0.00 3.27
2632 7409 7.510549 TCTGACAAGACTTAAAATTGGGAAG 57.489 36.000 0.00 0.00 0.00 3.46
2707 7489 1.202639 TCGATCCTACAATGCGGCAAT 60.203 47.619 6.82 0.00 0.00 3.56
2825 7607 2.463876 CTAACATGCGCGAGATCTTCA 58.536 47.619 12.10 0.00 0.00 3.02
2834 7616 1.714794 CGAGATCTTCAACAAGGCGT 58.285 50.000 0.00 0.00 0.00 5.68
3004 7786 1.522355 CTTCATCATCGGCGCCACT 60.522 57.895 28.98 10.00 0.00 4.00
3058 7840 3.550431 CCCGGTCGCCTGGATCAT 61.550 66.667 0.00 0.00 28.73 2.45
3097 7879 0.249868 CAGACGAGGCCTCACAACAA 60.250 55.000 31.67 0.00 0.00 2.83
3241 8023 3.744530 GCAAGTACGCCATTAGGGAAGAT 60.745 47.826 0.00 0.00 40.01 2.40
3258 8040 5.893824 GGGAAGATATTGAAAAGGACATGGT 59.106 40.000 0.00 0.00 0.00 3.55
3265 8047 2.225091 TGAAAAGGACATGGTGAGGCAT 60.225 45.455 0.00 0.00 0.00 4.40
3410 8192 1.628846 TCAGAAAGTACCAGGCCTTCC 59.371 52.381 0.00 0.00 0.00 3.46
3417 8199 4.033776 CCAGGCCTTCCCGCAGAA 62.034 66.667 0.00 0.00 39.21 3.02
3458 8240 2.048127 GCACCGAGTTCCGCTTCT 60.048 61.111 0.00 0.00 36.84 2.85
3507 8295 3.379445 CCACACCTCCGCGGTAGT 61.379 66.667 27.15 20.58 46.94 2.73
3529 8317 5.830457 AGTTGATGAGGATGAAGACGATCTA 59.170 40.000 0.00 0.00 0.00 1.98
3634 8463 8.604035 TCTCTTCATGTATAGAATTTTCGTTGC 58.396 33.333 0.00 0.00 0.00 4.17
3635 8464 7.398746 TCTTCATGTATAGAATTTTCGTTGCG 58.601 34.615 0.00 0.00 0.00 4.85
3636 8465 6.656314 TCATGTATAGAATTTTCGTTGCGT 57.344 33.333 0.00 0.00 0.00 5.24
3638 8467 8.187354 TCATGTATAGAATTTTCGTTGCGTAA 57.813 30.769 0.00 0.00 0.00 3.18
3639 8468 8.325282 TCATGTATAGAATTTTCGTTGCGTAAG 58.675 33.333 0.00 0.00 43.44 2.34
3641 8470 8.242085 TGTATAGAATTTTCGTTGCGTAAGAA 57.758 30.769 0.00 0.00 43.02 2.52
3650 8479 9.997482 ATTTTCGTTGCGTAAGAATTTACATAT 57.003 25.926 0.00 0.00 39.29 1.78
3699 8615 3.904136 ATTCTCCTTGTTGTGCTTTCG 57.096 42.857 0.00 0.00 0.00 3.46
3738 8654 4.760204 AGCCTAAGCGTTAACTGAATTGTT 59.240 37.500 3.71 0.00 46.67 2.83
3748 8664 7.285069 CGTTAACTGAATTGTTGATTACACGA 58.715 34.615 3.71 0.00 36.21 4.35
3749 8665 7.955324 CGTTAACTGAATTGTTGATTACACGAT 59.045 33.333 3.71 0.00 36.21 3.73
3758 8767 4.221041 TGTTGATTACACGATCTACCACCA 59.779 41.667 0.00 0.00 32.94 4.17
3765 10557 3.381908 ACACGATCTACCACCATTCTCTC 59.618 47.826 0.00 0.00 0.00 3.20
3766 10558 3.634448 CACGATCTACCACCATTCTCTCT 59.366 47.826 0.00 0.00 0.00 3.10
3798 10590 0.321671 GCTCCTGCACAAGACCACTA 59.678 55.000 0.00 0.00 39.41 2.74
3803 10595 3.135712 TCCTGCACAAGACCACTAGAAAA 59.864 43.478 0.00 0.00 0.00 2.29
3831 10759 9.643693 AAAAGGAGAATAGTTGCATGTTTAATG 57.356 29.630 0.00 0.00 0.00 1.90
3832 10760 8.579850 AAGGAGAATAGTTGCATGTTTAATGA 57.420 30.769 0.00 0.00 0.00 2.57
3833 10761 8.579850 AGGAGAATAGTTGCATGTTTAATGAA 57.420 30.769 0.00 0.00 0.00 2.57
3834 10762 9.193806 AGGAGAATAGTTGCATGTTTAATGAAT 57.806 29.630 0.00 0.00 0.00 2.57
3835 10763 9.241317 GGAGAATAGTTGCATGTTTAATGAATG 57.759 33.333 0.00 0.00 0.00 2.67
3840 10768 5.182950 AGTTGCATGTTTAATGAATGTCCGA 59.817 36.000 0.00 0.00 0.00 4.55
3900 10829 4.393371 GTCTGAAACTTATGGCTCTCAACC 59.607 45.833 0.00 0.00 0.00 3.77
3903 10832 2.386661 ACTTATGGCTCTCAACCGTG 57.613 50.000 0.00 0.00 0.00 4.94
3904 10833 1.899814 ACTTATGGCTCTCAACCGTGA 59.100 47.619 0.00 0.00 0.00 4.35
3905 10834 2.271800 CTTATGGCTCTCAACCGTGAC 58.728 52.381 0.00 0.00 0.00 3.67
3906 10835 0.172578 TATGGCTCTCAACCGTGACG 59.827 55.000 0.00 0.00 0.00 4.35
3907 10836 3.112709 GGCTCTCAACCGTGACGC 61.113 66.667 0.00 0.00 0.00 5.19
3908 10837 3.470567 GCTCTCAACCGTGACGCG 61.471 66.667 3.53 3.53 40.95 6.01
3917 10846 3.403057 CGTGACGCGGACTTGGTG 61.403 66.667 12.47 0.00 36.85 4.17
3918 10847 3.712881 GTGACGCGGACTTGGTGC 61.713 66.667 12.47 0.00 0.00 5.01
3919 10848 3.923864 TGACGCGGACTTGGTGCT 61.924 61.111 12.47 0.00 0.00 4.40
3920 10849 3.112709 GACGCGGACTTGGTGCTC 61.113 66.667 12.47 0.00 0.00 4.26
3921 10850 3.575351 GACGCGGACTTGGTGCTCT 62.575 63.158 12.47 0.00 0.00 4.09
3922 10851 2.811317 CGCGGACTTGGTGCTCTC 60.811 66.667 0.00 0.00 0.00 3.20
3923 10852 2.343758 GCGGACTTGGTGCTCTCA 59.656 61.111 0.00 0.00 0.00 3.27
3924 10853 1.739562 GCGGACTTGGTGCTCTCAG 60.740 63.158 0.00 0.00 0.00 3.35
3925 10854 1.967535 CGGACTTGGTGCTCTCAGA 59.032 57.895 0.00 0.00 0.00 3.27
3926 10855 0.534412 CGGACTTGGTGCTCTCAGAT 59.466 55.000 0.00 0.00 0.00 2.90
3927 10856 1.751351 CGGACTTGGTGCTCTCAGATA 59.249 52.381 0.00 0.00 0.00 1.98
3928 10857 2.480416 CGGACTTGGTGCTCTCAGATAC 60.480 54.545 0.00 0.00 0.00 2.24
3929 10858 2.159028 GGACTTGGTGCTCTCAGATACC 60.159 54.545 1.99 1.99 0.00 2.73
3930 10859 1.834263 ACTTGGTGCTCTCAGATACCC 59.166 52.381 5.93 0.00 32.20 3.69
3931 10860 0.824109 TTGGTGCTCTCAGATACCCG 59.176 55.000 5.93 0.00 32.20 5.28
3932 10861 1.068250 GGTGCTCTCAGATACCCGC 59.932 63.158 0.00 0.00 0.00 6.13
3933 10862 1.299468 GTGCTCTCAGATACCCGCG 60.299 63.158 0.00 0.00 0.00 6.46
3934 10863 2.355244 GCTCTCAGATACCCGCGC 60.355 66.667 0.00 0.00 0.00 6.86
3935 10864 3.120105 CTCTCAGATACCCGCGCA 58.880 61.111 8.75 0.00 0.00 6.09
3936 10865 1.299468 CTCTCAGATACCCGCGCAC 60.299 63.158 8.75 0.00 0.00 5.34
3937 10866 2.279517 CTCAGATACCCGCGCACC 60.280 66.667 8.75 0.00 0.00 5.01
3938 10867 3.792053 CTCAGATACCCGCGCACCC 62.792 68.421 8.75 0.00 0.00 4.61
3939 10868 3.849951 CAGATACCCGCGCACCCT 61.850 66.667 8.75 0.00 0.00 4.34
3940 10869 2.123597 AGATACCCGCGCACCCTA 60.124 61.111 8.75 0.00 0.00 3.53
3941 10870 1.533273 AGATACCCGCGCACCCTAT 60.533 57.895 8.75 0.00 0.00 2.57
3942 10871 0.251474 AGATACCCGCGCACCCTATA 60.251 55.000 8.75 0.00 0.00 1.31
3943 10872 0.822164 GATACCCGCGCACCCTATAT 59.178 55.000 8.75 0.00 0.00 0.86
3944 10873 0.535335 ATACCCGCGCACCCTATATG 59.465 55.000 8.75 0.00 0.00 1.78
3945 10874 2.162338 TACCCGCGCACCCTATATGC 62.162 60.000 8.75 0.00 39.81 3.14
3946 10875 2.030412 CCGCGCACCCTATATGCA 59.970 61.111 8.75 0.00 43.57 3.96
3947 10876 1.596752 CCGCGCACCCTATATGCAA 60.597 57.895 8.75 0.00 43.57 4.08
3948 10877 1.163420 CCGCGCACCCTATATGCAAA 61.163 55.000 8.75 0.00 43.57 3.68
3949 10878 0.660488 CGCGCACCCTATATGCAAAA 59.340 50.000 8.75 0.00 43.57 2.44
3950 10879 1.064803 CGCGCACCCTATATGCAAAAA 59.935 47.619 8.75 0.00 43.57 1.94
4069 10998 8.345565 AGAAATGATTTATATTGACTTCACGGC 58.654 33.333 0.00 0.00 0.00 5.68
4070 10999 7.566760 AATGATTTATATTGACTTCACGGCA 57.433 32.000 0.00 0.00 0.00 5.69
4071 11000 6.993786 TGATTTATATTGACTTCACGGCAA 57.006 33.333 0.00 0.00 0.00 4.52
4072 11001 7.384439 TGATTTATATTGACTTCACGGCAAA 57.616 32.000 0.00 0.00 0.00 3.68
4073 11002 7.821652 TGATTTATATTGACTTCACGGCAAAA 58.178 30.769 0.00 0.00 0.00 2.44
4074 11003 8.300286 TGATTTATATTGACTTCACGGCAAAAA 58.700 29.630 0.00 0.00 0.00 1.94
4101 11030 9.343103 AGACAAGTTTATGACGATAATATAGCG 57.657 33.333 0.00 0.00 44.20 4.26
4124 11053 8.993121 AGCGTGTATAGTACTTGTATATAACGT 58.007 33.333 0.00 0.00 32.89 3.99
4125 11054 9.599322 GCGTGTATAGTACTTGTATATAACGTT 57.401 33.333 5.88 5.88 32.89 3.99
4147 11076 4.829064 TTTTGTCGAATCTTCAACCCAG 57.171 40.909 0.00 0.00 0.00 4.45
4148 11077 2.472695 TGTCGAATCTTCAACCCAGG 57.527 50.000 0.00 0.00 0.00 4.45
4149 11078 1.974957 TGTCGAATCTTCAACCCAGGA 59.025 47.619 0.00 0.00 0.00 3.86
4150 11079 2.571653 TGTCGAATCTTCAACCCAGGAT 59.428 45.455 0.00 0.00 0.00 3.24
4151 11080 2.939103 GTCGAATCTTCAACCCAGGATG 59.061 50.000 0.00 0.00 0.00 3.51
4152 11081 1.672881 CGAATCTTCAACCCAGGATGC 59.327 52.381 0.00 0.00 31.97 3.91
4153 11082 2.726821 GAATCTTCAACCCAGGATGCA 58.273 47.619 0.00 0.00 31.97 3.96
4154 11083 2.905415 ATCTTCAACCCAGGATGCAA 57.095 45.000 0.00 0.00 31.97 4.08
4155 11084 1.909700 TCTTCAACCCAGGATGCAAC 58.090 50.000 0.00 0.00 31.97 4.17
4156 11085 0.523072 CTTCAACCCAGGATGCAACG 59.477 55.000 0.00 0.00 31.97 4.10
4157 11086 0.109532 TTCAACCCAGGATGCAACGA 59.890 50.000 0.00 0.00 31.97 3.85
4158 11087 0.109532 TCAACCCAGGATGCAACGAA 59.890 50.000 0.00 0.00 31.97 3.85
4159 11088 0.958091 CAACCCAGGATGCAACGAAA 59.042 50.000 0.00 0.00 31.97 3.46
4160 11089 1.068333 CAACCCAGGATGCAACGAAAG 60.068 52.381 0.00 0.00 31.97 2.62
4161 11090 0.110486 ACCCAGGATGCAACGAAAGT 59.890 50.000 0.00 0.00 40.81 2.66
4162 11091 0.804989 CCCAGGATGCAACGAAAGTC 59.195 55.000 0.00 0.00 38.18 3.01
4163 11092 1.522668 CCAGGATGCAACGAAAGTCA 58.477 50.000 0.00 0.00 38.18 3.41
4164 11093 2.086869 CCAGGATGCAACGAAAGTCAT 58.913 47.619 0.00 0.00 38.18 3.06
4165 11094 2.489329 CCAGGATGCAACGAAAGTCATT 59.511 45.455 0.00 0.00 38.18 2.57
4166 11095 3.426695 CCAGGATGCAACGAAAGTCATTC 60.427 47.826 0.00 0.00 38.18 2.67
4167 11096 5.634282 CCAGGATGCAACGAAAGTCATTCT 61.634 45.833 0.00 0.00 38.18 2.40
4168 11097 7.373531 CCAGGATGCAACGAAAGTCATTCTC 62.374 48.000 0.00 0.00 38.18 2.87
4177 11106 6.900568 ACGAAAGTCATTCTCTGATGAATC 57.099 37.500 0.00 0.00 44.19 2.52
4178 11107 6.638610 ACGAAAGTCATTCTCTGATGAATCT 58.361 36.000 0.00 0.00 44.19 2.40
4179 11108 7.102346 ACGAAAGTCATTCTCTGATGAATCTT 58.898 34.615 0.00 0.00 44.19 2.40
4180 11109 7.605691 ACGAAAGTCATTCTCTGATGAATCTTT 59.394 33.333 0.00 11.62 44.19 2.52
4181 11110 8.449397 CGAAAGTCATTCTCTGATGAATCTTTT 58.551 33.333 12.33 8.45 37.75 2.27
4279 11208 9.971922 ACTAATTTCTTTTTGCATATAGGATGC 57.028 29.630 2.55 2.55 44.76 3.91
4285 11214 3.540211 GCATATAGGATGCGCTGGT 57.460 52.632 9.73 0.00 35.17 4.00
4286 11215 2.672961 GCATATAGGATGCGCTGGTA 57.327 50.000 9.73 0.00 35.17 3.25
4287 11216 2.271800 GCATATAGGATGCGCTGGTAC 58.728 52.381 9.73 0.00 35.17 3.34
4288 11217 2.893637 CATATAGGATGCGCTGGTACC 58.106 52.381 9.73 4.43 0.00 3.34
4289 11218 1.263356 TATAGGATGCGCTGGTACCC 58.737 55.000 10.07 0.41 0.00 3.69
4290 11219 0.762842 ATAGGATGCGCTGGTACCCA 60.763 55.000 10.07 0.00 0.00 4.51
4300 11229 3.906115 TGGTACCCAGGTTCTCCTT 57.094 52.632 10.07 0.00 43.07 3.36
4301 11230 1.652947 TGGTACCCAGGTTCTCCTTC 58.347 55.000 10.07 0.00 43.07 3.46
4302 11231 1.132657 TGGTACCCAGGTTCTCCTTCA 60.133 52.381 10.07 0.00 43.07 3.02
4303 11232 2.197465 GGTACCCAGGTTCTCCTTCAT 58.803 52.381 0.00 0.00 43.07 2.57
4304 11233 2.092914 GGTACCCAGGTTCTCCTTCATG 60.093 54.545 0.00 0.00 43.07 3.07
4305 11234 1.747444 ACCCAGGTTCTCCTTCATGT 58.253 50.000 0.00 0.00 43.07 3.21
4306 11235 2.065799 ACCCAGGTTCTCCTTCATGTT 58.934 47.619 0.00 0.00 43.07 2.71
4307 11236 2.447047 ACCCAGGTTCTCCTTCATGTTT 59.553 45.455 0.00 0.00 43.07 2.83
4308 11237 3.117131 ACCCAGGTTCTCCTTCATGTTTT 60.117 43.478 0.00 0.00 43.07 2.43
4309 11238 3.507622 CCCAGGTTCTCCTTCATGTTTTC 59.492 47.826 0.00 0.00 43.07 2.29
4310 11239 3.507622 CCAGGTTCTCCTTCATGTTTTCC 59.492 47.826 0.00 0.00 43.07 3.13
4311 11240 3.507622 CAGGTTCTCCTTCATGTTTTCCC 59.492 47.826 0.00 0.00 43.07 3.97
4312 11241 3.399305 AGGTTCTCCTTCATGTTTTCCCT 59.601 43.478 0.00 0.00 42.12 4.20
4313 11242 3.759086 GGTTCTCCTTCATGTTTTCCCTC 59.241 47.826 0.00 0.00 0.00 4.30
4314 11243 4.507512 GGTTCTCCTTCATGTTTTCCCTCT 60.508 45.833 0.00 0.00 0.00 3.69
4315 11244 4.559862 TCTCCTTCATGTTTTCCCTCTC 57.440 45.455 0.00 0.00 0.00 3.20
4316 11245 3.909995 TCTCCTTCATGTTTTCCCTCTCA 59.090 43.478 0.00 0.00 0.00 3.27
4317 11246 4.350816 TCTCCTTCATGTTTTCCCTCTCAA 59.649 41.667 0.00 0.00 0.00 3.02
4318 11247 4.398319 TCCTTCATGTTTTCCCTCTCAAC 58.602 43.478 0.00 0.00 0.00 3.18
4319 11248 3.507622 CCTTCATGTTTTCCCTCTCAACC 59.492 47.826 0.00 0.00 0.00 3.77
4320 11249 2.778299 TCATGTTTTCCCTCTCAACCG 58.222 47.619 0.00 0.00 0.00 4.44
4321 11250 2.105821 TCATGTTTTCCCTCTCAACCGT 59.894 45.455 0.00 0.00 0.00 4.83
4322 11251 2.249844 TGTTTTCCCTCTCAACCGTC 57.750 50.000 0.00 0.00 0.00 4.79
4323 11252 1.202722 TGTTTTCCCTCTCAACCGTCC 60.203 52.381 0.00 0.00 0.00 4.79
4324 11253 1.071857 GTTTTCCCTCTCAACCGTCCT 59.928 52.381 0.00 0.00 0.00 3.85
4325 11254 1.430992 TTTCCCTCTCAACCGTCCTT 58.569 50.000 0.00 0.00 0.00 3.36
4326 11255 1.430992 TTCCCTCTCAACCGTCCTTT 58.569 50.000 0.00 0.00 0.00 3.11
4327 11256 0.974383 TCCCTCTCAACCGTCCTTTC 59.026 55.000 0.00 0.00 0.00 2.62
4328 11257 0.685097 CCCTCTCAACCGTCCTTTCA 59.315 55.000 0.00 0.00 0.00 2.69
4329 11258 1.608283 CCCTCTCAACCGTCCTTTCAC 60.608 57.143 0.00 0.00 0.00 3.18
4330 11259 1.070134 CCTCTCAACCGTCCTTTCACA 59.930 52.381 0.00 0.00 0.00 3.58
4331 11260 2.408050 CTCTCAACCGTCCTTTCACAG 58.592 52.381 0.00 0.00 0.00 3.66
4332 11261 1.760613 TCTCAACCGTCCTTTCACAGT 59.239 47.619 0.00 0.00 0.00 3.55
4333 11262 2.960384 TCTCAACCGTCCTTTCACAGTA 59.040 45.455 0.00 0.00 0.00 2.74
4334 11263 3.057734 CTCAACCGTCCTTTCACAGTAC 58.942 50.000 0.00 0.00 0.00 2.73
4335 11264 2.696707 TCAACCGTCCTTTCACAGTACT 59.303 45.455 0.00 0.00 0.00 2.73
4336 11265 3.890756 TCAACCGTCCTTTCACAGTACTA 59.109 43.478 0.00 0.00 0.00 1.82
4337 11266 4.022589 TCAACCGTCCTTTCACAGTACTAG 60.023 45.833 0.00 0.00 0.00 2.57
4338 11267 3.759581 ACCGTCCTTTCACAGTACTAGA 58.240 45.455 0.00 0.00 0.00 2.43
4339 11268 3.505293 ACCGTCCTTTCACAGTACTAGAC 59.495 47.826 0.00 0.00 0.00 2.59
4340 11269 3.504906 CCGTCCTTTCACAGTACTAGACA 59.495 47.826 0.00 0.00 0.00 3.41
4341 11270 4.022589 CCGTCCTTTCACAGTACTAGACAA 60.023 45.833 0.00 0.00 0.00 3.18
4342 11271 5.508489 CCGTCCTTTCACAGTACTAGACAAA 60.508 44.000 0.00 0.00 0.00 2.83
4343 11272 5.629849 CGTCCTTTCACAGTACTAGACAAAG 59.370 44.000 0.00 2.29 0.00 2.77
4344 11273 6.514063 GTCCTTTCACAGTACTAGACAAAGT 58.486 40.000 0.00 0.00 0.00 2.66
4345 11274 6.421202 GTCCTTTCACAGTACTAGACAAAGTG 59.579 42.308 0.00 0.00 0.00 3.16
4346 11275 5.696724 CCTTTCACAGTACTAGACAAAGTGG 59.303 44.000 0.00 0.00 31.98 4.00
4347 11276 4.252971 TCACAGTACTAGACAAAGTGGC 57.747 45.455 0.00 0.00 31.98 5.01
4348 11277 2.987149 CACAGTACTAGACAAAGTGGCG 59.013 50.000 0.00 0.00 0.00 5.69
4349 11278 1.993370 CAGTACTAGACAAAGTGGCGC 59.007 52.381 0.00 0.00 0.00 6.53
4350 11279 1.067071 AGTACTAGACAAAGTGGCGCC 60.067 52.381 22.73 22.73 0.00 6.53
4351 11280 0.248289 TACTAGACAAAGTGGCGCCC 59.752 55.000 26.77 15.80 0.00 6.13
4352 11281 1.296715 CTAGACAAAGTGGCGCCCT 59.703 57.895 26.77 18.07 0.00 5.19
4353 11282 0.741221 CTAGACAAAGTGGCGCCCTC 60.741 60.000 26.77 17.42 0.00 4.30
4354 11283 2.180159 TAGACAAAGTGGCGCCCTCC 62.180 60.000 26.77 12.19 0.00 4.30
4375 11304 4.752879 GCGACCGGCTACAGGCAA 62.753 66.667 0.00 0.00 44.01 4.52
4376 11305 2.509336 CGACCGGCTACAGGCAAG 60.509 66.667 0.00 0.00 44.01 4.01
4377 11306 2.663196 GACCGGCTACAGGCAAGT 59.337 61.111 0.00 0.00 44.01 3.16
4378 11307 1.895238 GACCGGCTACAGGCAAGTA 59.105 57.895 0.00 0.00 44.01 2.24
4379 11308 0.179108 GACCGGCTACAGGCAAGTAG 60.179 60.000 0.00 11.42 43.39 2.57
4380 11309 0.903454 ACCGGCTACAGGCAAGTAGT 60.903 55.000 0.00 0.00 42.68 2.73
4381 11310 0.249398 CCGGCTACAGGCAAGTAGTT 59.751 55.000 15.52 0.00 42.68 2.24
4382 11311 1.338769 CCGGCTACAGGCAAGTAGTTT 60.339 52.381 15.52 0.00 42.68 2.66
4383 11312 1.732259 CGGCTACAGGCAAGTAGTTTG 59.268 52.381 15.52 5.50 42.68 2.93
4384 11313 2.779506 GGCTACAGGCAAGTAGTTTGT 58.220 47.619 15.52 0.00 42.68 2.83
4385 11314 2.484264 GGCTACAGGCAAGTAGTTTGTG 59.516 50.000 15.52 0.00 42.68 3.33
4386 11315 3.139077 GCTACAGGCAAGTAGTTTGTGT 58.861 45.455 15.52 0.00 42.68 3.72
4387 11316 3.058914 GCTACAGGCAAGTAGTTTGTGTG 60.059 47.826 15.52 0.00 42.68 3.82
4388 11317 1.676006 ACAGGCAAGTAGTTTGTGTGC 59.324 47.619 0.00 0.00 39.08 4.57
4389 11318 0.944386 AGGCAAGTAGTTTGTGTGCG 59.056 50.000 0.00 0.00 39.08 5.34
4390 11319 0.941542 GGCAAGTAGTTTGTGTGCGA 59.058 50.000 0.00 0.00 39.08 5.10
4391 11320 1.535462 GGCAAGTAGTTTGTGTGCGAT 59.465 47.619 0.00 0.00 39.08 4.58
4392 11321 2.031157 GGCAAGTAGTTTGTGTGCGATT 60.031 45.455 0.00 0.00 39.08 3.34
4393 11322 3.550030 GGCAAGTAGTTTGTGTGCGATTT 60.550 43.478 0.00 0.00 39.08 2.17
4394 11323 4.041723 GCAAGTAGTTTGTGTGCGATTTT 58.958 39.130 0.00 0.00 39.08 1.82
4395 11324 5.209240 GCAAGTAGTTTGTGTGCGATTTTA 58.791 37.500 0.00 0.00 39.08 1.52
4396 11325 5.339611 GCAAGTAGTTTGTGTGCGATTTTAG 59.660 40.000 0.00 0.00 39.08 1.85
4397 11326 6.655062 CAAGTAGTTTGTGTGCGATTTTAGA 58.345 36.000 0.00 0.00 31.92 2.10
4398 11327 7.298122 CAAGTAGTTTGTGTGCGATTTTAGAT 58.702 34.615 0.00 0.00 31.92 1.98
4399 11328 6.831769 AGTAGTTTGTGTGCGATTTTAGATG 58.168 36.000 0.00 0.00 0.00 2.90
4400 11329 5.046910 AGTTTGTGTGCGATTTTAGATGG 57.953 39.130 0.00 0.00 0.00 3.51
4401 11330 4.518970 AGTTTGTGTGCGATTTTAGATGGT 59.481 37.500 0.00 0.00 0.00 3.55
4402 11331 4.418013 TTGTGTGCGATTTTAGATGGTG 57.582 40.909 0.00 0.00 0.00 4.17
4403 11332 3.407698 TGTGTGCGATTTTAGATGGTGT 58.592 40.909 0.00 0.00 0.00 4.16
4404 11333 3.188254 TGTGTGCGATTTTAGATGGTGTG 59.812 43.478 0.00 0.00 0.00 3.82
4405 11334 3.435327 GTGTGCGATTTTAGATGGTGTGA 59.565 43.478 0.00 0.00 0.00 3.58
4406 11335 3.684305 TGTGCGATTTTAGATGGTGTGAG 59.316 43.478 0.00 0.00 0.00 3.51
4407 11336 2.677836 TGCGATTTTAGATGGTGTGAGC 59.322 45.455 0.00 0.00 0.00 4.26
4408 11337 2.032178 GCGATTTTAGATGGTGTGAGCC 59.968 50.000 0.00 0.00 0.00 4.70
4409 11338 3.535561 CGATTTTAGATGGTGTGAGCCT 58.464 45.455 0.00 0.00 0.00 4.58
4410 11339 3.557595 CGATTTTAGATGGTGTGAGCCTC 59.442 47.826 0.00 0.00 0.00 4.70
4411 11340 4.517285 GATTTTAGATGGTGTGAGCCTCA 58.483 43.478 0.00 0.00 0.00 3.86
4412 11341 4.365514 TTTTAGATGGTGTGAGCCTCAA 57.634 40.909 0.00 0.00 0.00 3.02
4413 11342 4.574674 TTTAGATGGTGTGAGCCTCAAT 57.425 40.909 0.00 0.00 0.00 2.57
4414 11343 2.414994 AGATGGTGTGAGCCTCAATG 57.585 50.000 0.00 0.00 0.00 2.82
4415 11344 1.911357 AGATGGTGTGAGCCTCAATGA 59.089 47.619 0.00 0.00 0.00 2.57
4416 11345 2.508716 AGATGGTGTGAGCCTCAATGAT 59.491 45.455 0.00 0.00 0.00 2.45
4417 11346 2.118313 TGGTGTGAGCCTCAATGATG 57.882 50.000 0.00 0.00 0.00 3.07
4418 11347 1.340308 TGGTGTGAGCCTCAATGATGG 60.340 52.381 0.00 0.00 0.00 3.51
4419 11348 1.386533 GTGTGAGCCTCAATGATGGG 58.613 55.000 0.00 0.00 0.00 4.00
4420 11349 0.994247 TGTGAGCCTCAATGATGGGT 59.006 50.000 0.00 3.72 36.70 4.51
4421 11350 1.355381 TGTGAGCCTCAATGATGGGTT 59.645 47.619 0.00 0.00 33.83 4.11
4422 11351 1.747355 GTGAGCCTCAATGATGGGTTG 59.253 52.381 0.00 0.00 33.83 3.77
4423 11352 1.634973 TGAGCCTCAATGATGGGTTGA 59.365 47.619 0.00 0.00 33.83 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 4451 2.211468 AATTCTGGCCTCCGGGGAAC 62.211 60.000 0.37 0.00 37.23 3.62
18 4458 2.744352 ATCCTCAAATTCTGGCCTCC 57.256 50.000 3.32 0.00 0.00 4.30
37 4477 4.233632 TGCATCCATGACAACCTCATTA 57.766 40.909 0.00 0.00 37.53 1.90
318 4787 2.036992 AGCTTCTCAACAGTGGTCTGAG 59.963 50.000 11.11 11.11 43.76 3.35
349 4818 5.485353 AGGTCTGTCATTCCTGTCTTCAATA 59.515 40.000 0.00 0.00 0.00 1.90
435 4906 5.236478 GCTGAAGTAGTAGCTCTAGAGTCTG 59.764 48.000 20.75 12.00 36.99 3.51
552 5026 1.219124 CCAGTGTGCGTAGATGGCT 59.781 57.895 0.00 0.00 0.00 4.75
594 5068 3.515330 AGCTCAAAAATGCATAGTGCC 57.485 42.857 0.00 0.00 44.23 5.01
638 5114 7.732593 AGCCTAATGATCTATACACTTTCTCCT 59.267 37.037 0.00 0.00 0.00 3.69
723 5210 1.302033 CCTCGGTGCAGAGCAAACT 60.302 57.895 0.00 0.00 41.47 2.66
746 5233 1.298993 CTCCCTGATGCACTGCAGT 59.701 57.895 15.25 15.25 43.65 4.40
771 5413 1.598601 GGTGTCGTCCTCTAGATCGAC 59.401 57.143 24.80 24.80 43.37 4.20
776 5418 3.081710 TCAATGGTGTCGTCCTCTAGA 57.918 47.619 0.00 0.00 0.00 2.43
777 5419 3.711086 CATCAATGGTGTCGTCCTCTAG 58.289 50.000 0.00 0.00 0.00 2.43
815 5509 3.469564 GTCATTGGTGACGGCCATA 57.530 52.632 2.24 0.00 44.71 2.74
846 5602 0.320697 GGGTTTGTGCCGACTAGAGT 59.679 55.000 0.00 0.00 0.00 3.24
851 5607 1.303317 GGATGGGTTTGTGCCGACT 60.303 57.895 0.00 0.00 0.00 4.18
860 5616 1.675219 ACGTAGCGTGGATGGGTTT 59.325 52.632 0.00 0.00 39.18 3.27
870 5626 1.347564 CGACGATCTCACGTAGCGT 59.652 57.895 0.00 0.00 46.52 5.07
919 5675 1.303888 TCTTAGTCGAGGCCACCGT 60.304 57.895 5.01 0.00 0.00 4.83
933 5689 3.633418 GGTCTCTTGTAGCTCCCTCTTA 58.367 50.000 0.00 0.00 0.00 2.10
945 5706 1.254954 GGTACTGGACGGTCTCTTGT 58.745 55.000 8.23 4.91 0.00 3.16
988 5749 2.380084 GGTGACATGCCGAACTTCTA 57.620 50.000 0.00 0.00 0.00 2.10
1005 5766 2.122547 AGGACACCCTTGGACGGT 60.123 61.111 0.00 0.00 40.78 4.83
1017 5778 1.077805 TGGCCCGTAGAAGAGGACA 59.922 57.895 0.00 0.00 35.90 4.02
1043 5804 2.414161 GGGATTAGTTGCACTTTCACGC 60.414 50.000 0.00 0.00 0.00 5.34
1045 5806 2.161609 CGGGGATTAGTTGCACTTTCAC 59.838 50.000 0.00 0.00 0.00 3.18
1397 6161 4.082733 CGGATAGATCAAATCGGTAGAGCA 60.083 45.833 0.00 0.00 0.00 4.26
1400 6164 3.192844 GCCGGATAGATCAAATCGGTAGA 59.807 47.826 5.05 0.00 0.00 2.59
1450 6214 4.446371 CGAATTGTCTAGGATTTCTGGCT 58.554 43.478 0.00 0.00 0.00 4.75
1459 6223 2.758979 GGTGAGACCGAATTGTCTAGGA 59.241 50.000 0.00 0.00 45.41 2.94
1518 6282 2.967201 TGGTACGAAGGGAAACAGAGAA 59.033 45.455 0.00 0.00 0.00 2.87
1565 6329 3.998672 GCGAACTCGGTGGGACCA 61.999 66.667 0.69 0.00 38.47 4.02
1611 6375 5.238650 CACTCATTTCGGTAAGACCAAAACT 59.761 40.000 0.00 0.00 38.47 2.66
1677 6441 4.279922 TCGGTGAGACTGATTTCAACAGTA 59.720 41.667 0.00 0.00 46.57 2.74
1679 6443 3.653344 TCGGTGAGACTGATTTCAACAG 58.347 45.455 0.00 0.00 40.68 3.16
1742 6506 1.195115 GTGGGACAGATGTGCTAGGA 58.805 55.000 4.44 0.00 41.80 2.94
1754 6518 1.066215 CATGATCAACTCGGTGGGACA 60.066 52.381 0.00 0.00 0.00 4.02
1904 6669 2.317900 TGAATAGAGAAGGGGTGGAGGA 59.682 50.000 0.00 0.00 0.00 3.71
2024 6790 6.268847 GGGAAGGCTAGAGATCAAGATTCTTA 59.731 42.308 0.00 0.00 0.00 2.10
2092 6859 4.442052 CCAACACTCAACTCTCTCTCACAA 60.442 45.833 0.00 0.00 0.00 3.33
2258 7033 3.780624 GCGATCTCCTTGCCCTTAA 57.219 52.632 0.00 0.00 0.00 1.85
2286 7061 2.832129 TGCCTCACTCGGTTAGATCTTT 59.168 45.455 0.00 0.00 0.00 2.52
2295 7070 1.534235 AGGACTTGCCTCACTCGGT 60.534 57.895 0.00 0.00 46.97 4.69
2332 7107 3.525199 AGAAGCAACCTTGTCTATCCCAT 59.475 43.478 0.00 0.00 0.00 4.00
2391 7168 2.006888 CATGAAGGATAACGGTTGCGT 58.993 47.619 3.07 0.00 0.00 5.24
2461 7238 2.459060 TACGGAGATTTTTGGCGTGA 57.541 45.000 0.00 0.00 0.00 4.35
2480 7257 4.702131 GGAGAAGGCAAACACAATGTAGAT 59.298 41.667 0.00 0.00 0.00 1.98
2560 7337 5.418524 AGCAATCAACCTACACATGCAATTA 59.581 36.000 0.00 0.00 34.89 1.40
2612 7389 5.243954 GCCTCTTCCCAATTTTAAGTCTTGT 59.756 40.000 0.00 0.00 0.00 3.16
2632 7409 8.056407 ACTTGACCAAATAAAAATCTAGCCTC 57.944 34.615 0.00 0.00 0.00 4.70
2707 7489 0.179015 TCGCCTTTGCCAACAAGGTA 60.179 50.000 0.83 0.00 40.61 3.08
2810 7592 1.662629 CTTGTTGAAGATCTCGCGCAT 59.337 47.619 8.75 0.00 0.00 4.73
2825 7607 1.893808 CAGACTGGCACGCCTTGTT 60.894 57.895 9.92 0.00 36.94 2.83
2847 7629 0.303493 GTCGAAGAAAAGCACGCACA 59.697 50.000 0.00 0.00 39.69 4.57
3004 7786 5.566032 CGAGTCAATAATGTCCGGCCTATTA 60.566 44.000 0.00 1.82 0.00 0.98
3046 7828 2.006805 AGATGAGATGATCCAGGCGA 57.993 50.000 0.00 0.00 0.00 5.54
3055 7837 3.326006 GCAAGGGGATGTAGATGAGATGA 59.674 47.826 0.00 0.00 0.00 2.92
3058 7840 2.050144 GGCAAGGGGATGTAGATGAGA 58.950 52.381 0.00 0.00 0.00 3.27
3093 7875 3.152341 CAGGCCTTGAAGATCTGTTGTT 58.848 45.455 0.00 0.00 0.00 2.83
3097 7879 0.034670 GGCAGGCCTTGAAGATCTGT 60.035 55.000 0.00 0.00 0.00 3.41
3241 8023 4.016444 GCCTCACCATGTCCTTTTCAATA 58.984 43.478 0.00 0.00 0.00 1.90
3258 8040 0.925558 TTTGCCCATCCTATGCCTCA 59.074 50.000 0.00 0.00 0.00 3.86
3265 8047 1.367346 TGGTGTCTTTGCCCATCCTA 58.633 50.000 0.00 0.00 0.00 2.94
3417 8199 1.344496 ACCCCCTAGACTATTGCAGCT 60.344 52.381 0.00 0.00 0.00 4.24
3425 8207 0.685458 GTGCCGAACCCCCTAGACTA 60.685 60.000 0.00 0.00 0.00 2.59
3504 8286 5.830457 AGATCGTCTTCATCCTCATCAACTA 59.170 40.000 0.00 0.00 0.00 2.24
3507 8295 6.907853 ATAGATCGTCTTCATCCTCATCAA 57.092 37.500 0.00 0.00 0.00 2.57
3529 8317 6.721318 ACAATGGTTACTGGATCACTTGTAT 58.279 36.000 0.00 0.00 0.00 2.29
3611 8432 7.180079 ACGCAACGAAAATTCTATACATGAAG 58.820 34.615 0.00 0.00 0.00 3.02
3622 8450 8.206516 TGTAAATTCTTACGCAACGAAAATTC 57.793 30.769 0.00 0.00 40.38 2.17
3680 8514 2.639065 ACGAAAGCACAACAAGGAGAA 58.361 42.857 0.00 0.00 0.00 2.87
3681 8515 2.325583 ACGAAAGCACAACAAGGAGA 57.674 45.000 0.00 0.00 0.00 3.71
3699 8615 6.037726 GCTTAGGCTAGTTTTCAGAGTCTAC 58.962 44.000 0.00 0.00 35.22 2.59
3738 8654 5.362717 AGAATGGTGGTAGATCGTGTAATCA 59.637 40.000 0.00 0.00 0.00 2.57
3748 8664 4.407296 GGTTGAGAGAGAATGGTGGTAGAT 59.593 45.833 0.00 0.00 0.00 1.98
3749 8665 3.769844 GGTTGAGAGAGAATGGTGGTAGA 59.230 47.826 0.00 0.00 0.00 2.59
3758 8767 3.308046 GCAAAGAGGGGTTGAGAGAGAAT 60.308 47.826 0.00 0.00 0.00 2.40
3765 10557 0.695347 AGGAGCAAAGAGGGGTTGAG 59.305 55.000 0.00 0.00 0.00 3.02
3766 10558 0.401738 CAGGAGCAAAGAGGGGTTGA 59.598 55.000 0.00 0.00 0.00 3.18
3812 10604 9.023967 GGACATTCATTAAACATGCAACTATTC 57.976 33.333 0.00 0.00 0.00 1.75
3828 10756 9.740239 CAATGAGAAATTAATCGGACATTCATT 57.260 29.630 0.00 0.00 33.29 2.57
3829 10757 9.123902 TCAATGAGAAATTAATCGGACATTCAT 57.876 29.630 0.00 0.00 0.00 2.57
3830 10758 8.504812 TCAATGAGAAATTAATCGGACATTCA 57.495 30.769 0.00 0.00 0.00 2.57
3831 10759 9.226345 GTTCAATGAGAAATTAATCGGACATTC 57.774 33.333 0.00 0.00 38.13 2.67
3832 10760 8.960591 AGTTCAATGAGAAATTAATCGGACATT 58.039 29.630 0.00 0.00 38.13 2.71
3833 10761 8.511604 AGTTCAATGAGAAATTAATCGGACAT 57.488 30.769 0.00 0.00 38.13 3.06
3834 10762 7.921786 AGTTCAATGAGAAATTAATCGGACA 57.078 32.000 0.00 0.00 38.13 4.02
3835 10763 8.237267 ACAAGTTCAATGAGAAATTAATCGGAC 58.763 33.333 0.00 0.00 42.13 4.79
3900 10829 3.403057 CACCAAGTCCGCGTCACG 61.403 66.667 4.92 0.00 43.15 4.35
3903 10832 3.112709 GAGCACCAAGTCCGCGTC 61.113 66.667 4.92 0.00 0.00 5.19
3904 10833 3.575351 GAGAGCACCAAGTCCGCGT 62.575 63.158 4.92 0.00 0.00 6.01
3905 10834 2.811317 GAGAGCACCAAGTCCGCG 60.811 66.667 0.00 0.00 0.00 6.46
3906 10835 1.739562 CTGAGAGCACCAAGTCCGC 60.740 63.158 0.00 0.00 0.00 5.54
3907 10836 0.534412 ATCTGAGAGCACCAAGTCCG 59.466 55.000 0.00 0.00 0.00 4.79
3908 10837 2.159028 GGTATCTGAGAGCACCAAGTCC 60.159 54.545 10.28 0.00 0.00 3.85
3909 10838 2.159028 GGGTATCTGAGAGCACCAAGTC 60.159 54.545 15.44 0.00 32.42 3.01
3910 10839 1.834263 GGGTATCTGAGAGCACCAAGT 59.166 52.381 15.44 0.00 32.42 3.16
3911 10840 1.202463 CGGGTATCTGAGAGCACCAAG 60.202 57.143 15.44 7.15 32.42 3.61
3912 10841 0.824109 CGGGTATCTGAGAGCACCAA 59.176 55.000 15.44 0.00 32.42 3.67
3913 10842 1.676678 GCGGGTATCTGAGAGCACCA 61.677 60.000 15.44 0.00 32.42 4.17
3914 10843 1.068250 GCGGGTATCTGAGAGCACC 59.932 63.158 7.34 7.34 0.00 5.01
3915 10844 1.299468 CGCGGGTATCTGAGAGCAC 60.299 63.158 0.00 0.00 0.00 4.40
3916 10845 3.120105 CGCGGGTATCTGAGAGCA 58.880 61.111 0.00 0.00 0.00 4.26
3917 10846 2.355244 GCGCGGGTATCTGAGAGC 60.355 66.667 8.83 0.00 0.00 4.09
3918 10847 1.299468 GTGCGCGGGTATCTGAGAG 60.299 63.158 8.83 0.00 0.00 3.20
3919 10848 2.782222 GGTGCGCGGGTATCTGAGA 61.782 63.158 8.83 0.00 0.00 3.27
3920 10849 2.279517 GGTGCGCGGGTATCTGAG 60.280 66.667 8.83 0.00 0.00 3.35
3921 10850 2.914756 TAGGGTGCGCGGGTATCTGA 62.915 60.000 8.83 0.00 0.00 3.27
3922 10851 1.816863 ATAGGGTGCGCGGGTATCTG 61.817 60.000 8.83 0.00 0.00 2.90
3923 10852 0.251474 TATAGGGTGCGCGGGTATCT 60.251 55.000 8.83 1.71 0.00 1.98
3924 10853 0.822164 ATATAGGGTGCGCGGGTATC 59.178 55.000 8.83 0.00 0.00 2.24
3925 10854 0.535335 CATATAGGGTGCGCGGGTAT 59.465 55.000 8.83 0.00 0.00 2.73
3926 10855 1.969085 CATATAGGGTGCGCGGGTA 59.031 57.895 8.83 0.00 0.00 3.69
3927 10856 2.741092 CATATAGGGTGCGCGGGT 59.259 61.111 8.83 0.00 0.00 5.28
3928 10857 2.742372 GCATATAGGGTGCGCGGG 60.742 66.667 8.83 0.00 32.29 6.13
3929 10858 1.163420 TTTGCATATAGGGTGCGCGG 61.163 55.000 8.83 0.00 45.37 6.46
3930 10859 0.660488 TTTTGCATATAGGGTGCGCG 59.340 50.000 0.00 0.00 45.37 6.86
3931 10860 2.861462 TTTTTGCATATAGGGTGCGC 57.139 45.000 0.00 0.00 45.37 6.09
4043 10972 8.345565 GCCGTGAAGTCAATATAAATCATTTCT 58.654 33.333 0.00 0.00 0.00 2.52
4044 10973 8.128582 TGCCGTGAAGTCAATATAAATCATTTC 58.871 33.333 0.00 0.00 0.00 2.17
4045 10974 7.995289 TGCCGTGAAGTCAATATAAATCATTT 58.005 30.769 0.00 0.00 0.00 2.32
4046 10975 7.566760 TGCCGTGAAGTCAATATAAATCATT 57.433 32.000 0.00 0.00 0.00 2.57
4047 10976 7.566760 TTGCCGTGAAGTCAATATAAATCAT 57.433 32.000 0.00 0.00 0.00 2.45
4048 10977 6.993786 TTGCCGTGAAGTCAATATAAATCA 57.006 33.333 0.00 0.00 0.00 2.57
4049 10978 8.682128 TTTTTGCCGTGAAGTCAATATAAATC 57.318 30.769 0.00 0.00 0.00 2.17
4075 11004 9.343103 CGCTATATTATCGTCATAAACTTGTCT 57.657 33.333 0.00 0.00 0.00 3.41
4076 11005 9.125906 ACGCTATATTATCGTCATAAACTTGTC 57.874 33.333 0.00 0.00 0.00 3.18
4077 11006 8.912658 CACGCTATATTATCGTCATAAACTTGT 58.087 33.333 0.00 0.00 33.84 3.16
4078 11007 8.912658 ACACGCTATATTATCGTCATAAACTTG 58.087 33.333 0.00 0.00 33.84 3.16
4086 11015 9.591792 AGTACTATACACGCTATATTATCGTCA 57.408 33.333 0.00 0.00 33.84 4.35
4098 11027 8.993121 ACGTTATATACAAGTACTATACACGCT 58.007 33.333 0.00 0.00 0.00 5.07
4099 11028 9.599322 AACGTTATATACAAGTACTATACACGC 57.401 33.333 0.00 0.00 0.00 5.34
4125 11054 4.037446 CCTGGGTTGAAGATTCGACAAAAA 59.963 41.667 13.58 0.00 42.23 1.94
4126 11055 3.568007 CCTGGGTTGAAGATTCGACAAAA 59.432 43.478 13.58 0.11 42.23 2.44
4127 11056 3.146066 CCTGGGTTGAAGATTCGACAAA 58.854 45.455 13.58 2.17 42.23 2.83
4128 11057 2.370519 TCCTGGGTTGAAGATTCGACAA 59.629 45.455 13.58 2.46 42.23 3.18
4129 11058 1.974957 TCCTGGGTTGAAGATTCGACA 59.025 47.619 13.58 0.00 42.23 4.35
4130 11059 2.762535 TCCTGGGTTGAAGATTCGAC 57.237 50.000 4.61 4.61 40.20 4.20
4131 11060 2.680805 GCATCCTGGGTTGAAGATTCGA 60.681 50.000 0.00 0.00 0.00 3.71
4132 11061 1.672881 GCATCCTGGGTTGAAGATTCG 59.327 52.381 0.00 0.00 0.00 3.34
4133 11062 2.726821 TGCATCCTGGGTTGAAGATTC 58.273 47.619 0.00 0.00 0.00 2.52
4134 11063 2.827921 GTTGCATCCTGGGTTGAAGATT 59.172 45.455 0.00 0.00 0.00 2.40
4135 11064 2.450476 GTTGCATCCTGGGTTGAAGAT 58.550 47.619 0.00 0.00 0.00 2.40
4136 11065 1.881925 CGTTGCATCCTGGGTTGAAGA 60.882 52.381 0.00 0.00 0.00 2.87
4137 11066 0.523072 CGTTGCATCCTGGGTTGAAG 59.477 55.000 0.00 0.00 0.00 3.02
4138 11067 0.109532 TCGTTGCATCCTGGGTTGAA 59.890 50.000 0.00 0.00 0.00 2.69
4139 11068 0.109532 TTCGTTGCATCCTGGGTTGA 59.890 50.000 0.00 0.00 0.00 3.18
4140 11069 0.958091 TTTCGTTGCATCCTGGGTTG 59.042 50.000 0.00 0.00 0.00 3.77
4141 11070 1.247567 CTTTCGTTGCATCCTGGGTT 58.752 50.000 0.00 0.00 0.00 4.11
4142 11071 0.110486 ACTTTCGTTGCATCCTGGGT 59.890 50.000 0.00 0.00 0.00 4.51
4143 11072 0.804989 GACTTTCGTTGCATCCTGGG 59.195 55.000 0.00 0.00 0.00 4.45
4144 11073 1.522668 TGACTTTCGTTGCATCCTGG 58.477 50.000 0.00 0.00 0.00 4.45
4145 11074 3.438087 AGAATGACTTTCGTTGCATCCTG 59.562 43.478 0.00 0.00 39.46 3.86
4146 11075 3.679389 AGAATGACTTTCGTTGCATCCT 58.321 40.909 0.00 0.00 39.46 3.24
4147 11076 3.686726 AGAGAATGACTTTCGTTGCATCC 59.313 43.478 0.00 0.00 39.46 3.51
4148 11077 4.389992 TCAGAGAATGACTTTCGTTGCATC 59.610 41.667 0.00 0.00 39.46 3.91
4149 11078 4.318332 TCAGAGAATGACTTTCGTTGCAT 58.682 39.130 0.00 0.00 39.46 3.96
4150 11079 3.727726 TCAGAGAATGACTTTCGTTGCA 58.272 40.909 0.00 0.00 39.46 4.08
4151 11080 4.389992 TCATCAGAGAATGACTTTCGTTGC 59.610 41.667 0.00 0.00 41.91 4.17
4152 11081 6.471976 TTCATCAGAGAATGACTTTCGTTG 57.528 37.500 0.00 0.20 41.91 4.10
4153 11082 7.102346 AGATTCATCAGAGAATGACTTTCGTT 58.898 34.615 0.00 0.00 41.91 3.85
4154 11083 6.638610 AGATTCATCAGAGAATGACTTTCGT 58.361 36.000 0.00 0.00 41.91 3.85
4155 11084 7.536895 AAGATTCATCAGAGAATGACTTTCG 57.463 36.000 0.00 0.00 41.91 3.46
4253 11182 9.971922 GCATCCTATATGCAAAAAGAAATTAGT 57.028 29.630 5.14 0.00 44.00 2.24
4254 11183 9.121517 CGCATCCTATATGCAAAAAGAAATTAG 57.878 33.333 10.30 0.00 44.75 1.73
4255 11184 7.594758 GCGCATCCTATATGCAAAAAGAAATTA 59.405 33.333 0.30 0.00 44.75 1.40
4256 11185 6.421801 GCGCATCCTATATGCAAAAAGAAATT 59.578 34.615 0.30 0.00 44.75 1.82
4257 11186 5.922544 GCGCATCCTATATGCAAAAAGAAAT 59.077 36.000 0.30 0.00 44.75 2.17
4258 11187 5.067674 AGCGCATCCTATATGCAAAAAGAAA 59.932 36.000 11.47 0.00 44.75 2.52
4259 11188 4.580167 AGCGCATCCTATATGCAAAAAGAA 59.420 37.500 11.47 0.00 44.75 2.52
4260 11189 4.023792 CAGCGCATCCTATATGCAAAAAGA 60.024 41.667 11.47 0.00 44.75 2.52
4261 11190 4.224433 CAGCGCATCCTATATGCAAAAAG 58.776 43.478 11.47 0.00 44.75 2.27
4262 11191 3.004629 CCAGCGCATCCTATATGCAAAAA 59.995 43.478 11.47 0.00 44.75 1.94
4263 11192 2.553602 CCAGCGCATCCTATATGCAAAA 59.446 45.455 11.47 0.00 44.75 2.44
4264 11193 2.153645 CCAGCGCATCCTATATGCAAA 58.846 47.619 11.47 0.00 44.75 3.68
4265 11194 1.072173 ACCAGCGCATCCTATATGCAA 59.928 47.619 11.47 0.00 44.75 4.08
4266 11195 0.686789 ACCAGCGCATCCTATATGCA 59.313 50.000 11.47 0.00 44.75 3.96
4267 11196 2.271800 GTACCAGCGCATCCTATATGC 58.728 52.381 11.47 0.00 41.35 3.14
4268 11197 2.893637 GGTACCAGCGCATCCTATATG 58.106 52.381 11.47 0.00 0.00 1.78
4291 11220 3.759086 GAGGGAAAACATGAAGGAGAACC 59.241 47.826 0.00 0.00 0.00 3.62
4292 11221 4.657013 AGAGGGAAAACATGAAGGAGAAC 58.343 43.478 0.00 0.00 0.00 3.01
4293 11222 4.350816 TGAGAGGGAAAACATGAAGGAGAA 59.649 41.667 0.00 0.00 0.00 2.87
4294 11223 3.909995 TGAGAGGGAAAACATGAAGGAGA 59.090 43.478 0.00 0.00 0.00 3.71
4295 11224 4.292186 TGAGAGGGAAAACATGAAGGAG 57.708 45.455 0.00 0.00 0.00 3.69
4296 11225 4.398319 GTTGAGAGGGAAAACATGAAGGA 58.602 43.478 0.00 0.00 0.00 3.36
4297 11226 3.507622 GGTTGAGAGGGAAAACATGAAGG 59.492 47.826 0.00 0.00 0.00 3.46
4298 11227 3.189287 CGGTTGAGAGGGAAAACATGAAG 59.811 47.826 0.00 0.00 0.00 3.02
4299 11228 3.146066 CGGTTGAGAGGGAAAACATGAA 58.854 45.455 0.00 0.00 0.00 2.57
4300 11229 2.105821 ACGGTTGAGAGGGAAAACATGA 59.894 45.455 0.00 0.00 0.00 3.07
4301 11230 2.484264 GACGGTTGAGAGGGAAAACATG 59.516 50.000 0.00 0.00 0.00 3.21
4302 11231 2.552373 GGACGGTTGAGAGGGAAAACAT 60.552 50.000 0.00 0.00 0.00 2.71
4303 11232 1.202722 GGACGGTTGAGAGGGAAAACA 60.203 52.381 0.00 0.00 0.00 2.83
4304 11233 1.071857 AGGACGGTTGAGAGGGAAAAC 59.928 52.381 0.00 0.00 0.00 2.43
4305 11234 1.430992 AGGACGGTTGAGAGGGAAAA 58.569 50.000 0.00 0.00 0.00 2.29
4306 11235 1.430992 AAGGACGGTTGAGAGGGAAA 58.569 50.000 0.00 0.00 0.00 3.13
4307 11236 1.346722 GAAAGGACGGTTGAGAGGGAA 59.653 52.381 0.00 0.00 0.00 3.97
4308 11237 0.974383 GAAAGGACGGTTGAGAGGGA 59.026 55.000 0.00 0.00 0.00 4.20
4309 11238 0.685097 TGAAAGGACGGTTGAGAGGG 59.315 55.000 0.00 0.00 0.00 4.30
4310 11239 1.070134 TGTGAAAGGACGGTTGAGAGG 59.930 52.381 0.00 0.00 0.00 3.69
4311 11240 2.224066 ACTGTGAAAGGACGGTTGAGAG 60.224 50.000 0.00 0.00 30.92 3.20
4312 11241 1.760613 ACTGTGAAAGGACGGTTGAGA 59.239 47.619 0.00 0.00 30.92 3.27
4313 11242 2.240493 ACTGTGAAAGGACGGTTGAG 57.760 50.000 0.00 0.00 30.92 3.02
4314 11243 2.696707 AGTACTGTGAAAGGACGGTTGA 59.303 45.455 0.00 0.00 45.49 3.18
4315 11244 3.107642 AGTACTGTGAAAGGACGGTTG 57.892 47.619 0.00 0.00 45.49 3.77
4316 11245 4.022503 GTCTAGTACTGTGAAAGGACGGTT 60.023 45.833 5.39 0.00 45.49 4.44
4317 11246 3.505293 GTCTAGTACTGTGAAAGGACGGT 59.495 47.826 5.39 0.00 45.49 4.83
4318 11247 3.504906 TGTCTAGTACTGTGAAAGGACGG 59.495 47.826 5.39 0.00 45.49 4.79
4319 11248 4.761235 TGTCTAGTACTGTGAAAGGACG 57.239 45.455 5.39 0.00 45.49 4.79
4320 11249 6.421202 CACTTTGTCTAGTACTGTGAAAGGAC 59.579 42.308 5.39 3.50 40.51 3.85
4321 11250 6.462487 CCACTTTGTCTAGTACTGTGAAAGGA 60.462 42.308 5.39 0.00 31.18 3.36
4322 11251 5.696724 CCACTTTGTCTAGTACTGTGAAAGG 59.303 44.000 5.39 0.00 31.18 3.11
4323 11252 5.177696 GCCACTTTGTCTAGTACTGTGAAAG 59.822 44.000 5.39 10.50 31.18 2.62
4324 11253 5.054477 GCCACTTTGTCTAGTACTGTGAAA 58.946 41.667 5.39 0.00 31.18 2.69
4325 11254 4.628074 GCCACTTTGTCTAGTACTGTGAA 58.372 43.478 5.39 0.00 31.18 3.18
4326 11255 3.305131 CGCCACTTTGTCTAGTACTGTGA 60.305 47.826 5.39 0.71 31.18 3.58
4327 11256 2.987149 CGCCACTTTGTCTAGTACTGTG 59.013 50.000 5.39 2.94 0.00 3.66
4328 11257 2.609737 GCGCCACTTTGTCTAGTACTGT 60.610 50.000 5.39 0.00 0.00 3.55
4329 11258 1.993370 GCGCCACTTTGTCTAGTACTG 59.007 52.381 5.39 0.00 0.00 2.74
4330 11259 1.067071 GGCGCCACTTTGTCTAGTACT 60.067 52.381 24.80 0.00 0.00 2.73
4331 11260 1.356938 GGCGCCACTTTGTCTAGTAC 58.643 55.000 24.80 0.00 0.00 2.73
4332 11261 0.248289 GGGCGCCACTTTGTCTAGTA 59.752 55.000 30.85 0.00 0.00 1.82
4333 11262 1.003718 GGGCGCCACTTTGTCTAGT 60.004 57.895 30.85 0.00 0.00 2.57
4334 11263 0.741221 GAGGGCGCCACTTTGTCTAG 60.741 60.000 30.85 0.00 0.00 2.43
4335 11264 1.295423 GAGGGCGCCACTTTGTCTA 59.705 57.895 30.85 0.00 0.00 2.59
4336 11265 2.032681 GAGGGCGCCACTTTGTCT 59.967 61.111 30.85 14.42 0.00 3.41
4337 11266 3.056328 GGAGGGCGCCACTTTGTC 61.056 66.667 30.85 13.65 0.00 3.18
4358 11287 4.752879 TTGCCTGTAGCCGGTCGC 62.753 66.667 1.90 0.00 42.71 5.19
4359 11288 1.940883 TACTTGCCTGTAGCCGGTCG 61.941 60.000 1.90 0.00 42.71 4.79
4360 11289 0.179108 CTACTTGCCTGTAGCCGGTC 60.179 60.000 1.90 0.00 42.71 4.79
4361 11290 0.903454 ACTACTTGCCTGTAGCCGGT 60.903 55.000 1.90 0.00 42.53 5.28
4362 11291 0.249398 AACTACTTGCCTGTAGCCGG 59.751 55.000 0.00 0.00 42.53 6.13
4363 11292 1.732259 CAAACTACTTGCCTGTAGCCG 59.268 52.381 11.59 0.20 42.53 5.52
4364 11293 2.484264 CACAAACTACTTGCCTGTAGCC 59.516 50.000 11.59 0.00 42.53 3.93
4365 11294 3.058914 CACACAAACTACTTGCCTGTAGC 60.059 47.826 11.59 0.00 42.53 3.58
4366 11295 3.058914 GCACACAAACTACTTGCCTGTAG 60.059 47.826 10.48 10.48 43.88 2.74
4367 11296 2.875933 GCACACAAACTACTTGCCTGTA 59.124 45.455 0.00 0.00 38.75 2.74
4368 11297 1.676006 GCACACAAACTACTTGCCTGT 59.324 47.619 0.00 0.00 38.75 4.00
4369 11298 1.334059 CGCACACAAACTACTTGCCTG 60.334 52.381 0.00 0.00 38.75 4.85
4370 11299 0.944386 CGCACACAAACTACTTGCCT 59.056 50.000 0.00 0.00 38.75 4.75
4371 11300 0.941542 TCGCACACAAACTACTTGCC 59.058 50.000 0.00 0.00 38.75 4.52
4372 11301 2.969443 ATCGCACACAAACTACTTGC 57.031 45.000 0.00 0.00 38.75 4.01
4373 11302 6.655062 TCTAAAATCGCACACAAACTACTTG 58.345 36.000 0.00 0.00 41.19 3.16
4374 11303 6.854496 TCTAAAATCGCACACAAACTACTT 57.146 33.333 0.00 0.00 0.00 2.24
4375 11304 6.128282 CCATCTAAAATCGCACACAAACTACT 60.128 38.462 0.00 0.00 0.00 2.57
4376 11305 6.021596 CCATCTAAAATCGCACACAAACTAC 58.978 40.000 0.00 0.00 0.00 2.73
4377 11306 5.703592 ACCATCTAAAATCGCACACAAACTA 59.296 36.000 0.00 0.00 0.00 2.24
4378 11307 4.518970 ACCATCTAAAATCGCACACAAACT 59.481 37.500 0.00 0.00 0.00 2.66
4379 11308 4.616802 CACCATCTAAAATCGCACACAAAC 59.383 41.667 0.00 0.00 0.00 2.93
4380 11309 4.277174 ACACCATCTAAAATCGCACACAAA 59.723 37.500 0.00 0.00 0.00 2.83
4381 11310 3.818210 ACACCATCTAAAATCGCACACAA 59.182 39.130 0.00 0.00 0.00 3.33
4382 11311 3.188254 CACACCATCTAAAATCGCACACA 59.812 43.478 0.00 0.00 0.00 3.72
4383 11312 3.435327 TCACACCATCTAAAATCGCACAC 59.565 43.478 0.00 0.00 0.00 3.82
4384 11313 3.669536 TCACACCATCTAAAATCGCACA 58.330 40.909 0.00 0.00 0.00 4.57
4385 11314 3.485877 GCTCACACCATCTAAAATCGCAC 60.486 47.826 0.00 0.00 0.00 5.34
4386 11315 2.677836 GCTCACACCATCTAAAATCGCA 59.322 45.455 0.00 0.00 0.00 5.10
4387 11316 2.032178 GGCTCACACCATCTAAAATCGC 59.968 50.000 0.00 0.00 0.00 4.58
4388 11317 3.535561 AGGCTCACACCATCTAAAATCG 58.464 45.455 0.00 0.00 0.00 3.34
4389 11318 4.517285 TGAGGCTCACACCATCTAAAATC 58.483 43.478 14.43 0.00 0.00 2.17
4390 11319 4.574674 TGAGGCTCACACCATCTAAAAT 57.425 40.909 14.43 0.00 0.00 1.82
4391 11320 4.365514 TTGAGGCTCACACCATCTAAAA 57.634 40.909 18.55 0.00 0.00 1.52
4392 11321 4.019411 TCATTGAGGCTCACACCATCTAAA 60.019 41.667 18.55 0.00 0.00 1.85
4393 11322 3.519107 TCATTGAGGCTCACACCATCTAA 59.481 43.478 18.55 0.00 0.00 2.10
4394 11323 3.106827 TCATTGAGGCTCACACCATCTA 58.893 45.455 18.55 0.00 0.00 1.98
4395 11324 1.911357 TCATTGAGGCTCACACCATCT 59.089 47.619 18.55 0.00 0.00 2.90
4396 11325 2.408271 TCATTGAGGCTCACACCATC 57.592 50.000 18.55 0.00 0.00 3.51
4397 11326 2.651455 CATCATTGAGGCTCACACCAT 58.349 47.619 18.55 5.01 0.00 3.55
4398 11327 1.340308 CCATCATTGAGGCTCACACCA 60.340 52.381 18.55 2.27 0.00 4.17
4399 11328 1.386533 CCATCATTGAGGCTCACACC 58.613 55.000 18.55 0.00 0.00 4.16
4400 11329 1.340405 ACCCATCATTGAGGCTCACAC 60.340 52.381 18.55 0.00 0.00 3.82
4401 11330 0.994247 ACCCATCATTGAGGCTCACA 59.006 50.000 18.55 9.21 0.00 3.58
4402 11331 1.747355 CAACCCATCATTGAGGCTCAC 59.253 52.381 18.55 0.00 0.00 3.51
4403 11332 1.634973 TCAACCCATCATTGAGGCTCA 59.365 47.619 14.43 14.43 32.34 4.26
4404 11333 2.295885 CTCAACCCATCATTGAGGCTC 58.704 52.381 7.79 7.79 46.21 4.70
4405 11334 2.431954 CTCAACCCATCATTGAGGCT 57.568 50.000 6.81 0.00 46.21 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.