Multiple sequence alignment - TraesCS1D01G340000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G340000 chr1D 100.000 2583 0 0 1 2583 430108082 430110664 0.000000e+00 4771
1 TraesCS1D01G340000 chr1D 94.371 2185 86 14 412 2583 278102464 278100304 0.000000e+00 3319
2 TraesCS1D01G340000 chr4D 95.188 2182 94 7 407 2583 502108821 502106646 0.000000e+00 3437
3 TraesCS1D01G340000 chr4D 95.087 2178 89 9 411 2582 481887028 481889193 0.000000e+00 3413
4 TraesCS1D01G340000 chr3D 94.884 2189 95 9 405 2583 553937355 553935174 0.000000e+00 3406
5 TraesCS1D01G340000 chr3D 89.057 265 28 1 145 408 120122770 120123034 6.890000e-86 327
6 TraesCS1D01G340000 chr5A 94.792 2189 96 8 405 2583 619775392 619773212 0.000000e+00 3395
7 TraesCS1D01G340000 chr2A 94.240 2205 105 15 391 2583 704738849 704736655 0.000000e+00 3349
8 TraesCS1D01G340000 chr7A 94.230 2201 110 13 389 2583 661594045 661591856 0.000000e+00 3345
9 TraesCS1D01G340000 chr2D 94.495 2180 101 12 408 2583 350066011 350068175 0.000000e+00 3343
10 TraesCS1D01G340000 chr2D 94.292 2190 99 17 404 2580 498273316 498275492 0.000000e+00 3328
11 TraesCS1D01G340000 chr2D 92.958 142 9 1 8 149 128458740 128458600 3.370000e-49 206
12 TraesCS1D01G340000 chr7D 96.212 132 5 0 20 151 117761504 117761373 1.560000e-52 217
13 TraesCS1D01G340000 chr1B 94.964 139 6 1 8 146 332086321 332086458 1.560000e-52 217
14 TraesCS1D01G340000 chr6D 96.183 131 5 0 20 150 433639339 433639209 5.600000e-52 215
15 TraesCS1D01G340000 chr3B 95.522 134 5 1 20 153 368537721 368537853 2.010000e-51 213
16 TraesCS1D01G340000 chr7B 93.571 140 8 1 13 152 140609537 140609399 9.370000e-50 207
17 TraesCS1D01G340000 chr5B 93.571 140 8 1 20 158 660144584 660144723 9.370000e-50 207
18 TraesCS1D01G340000 chr5B 89.873 158 13 3 6 163 24512675 24512829 1.570000e-47 200
19 TraesCS1D01G340000 chr6B 93.007 143 7 3 13 154 234690566 234690706 3.370000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G340000 chr1D 430108082 430110664 2582 False 4771 4771 100.000 1 2583 1 chr1D.!!$F1 2582
1 TraesCS1D01G340000 chr1D 278100304 278102464 2160 True 3319 3319 94.371 412 2583 1 chr1D.!!$R1 2171
2 TraesCS1D01G340000 chr4D 502106646 502108821 2175 True 3437 3437 95.188 407 2583 1 chr4D.!!$R1 2176
3 TraesCS1D01G340000 chr4D 481887028 481889193 2165 False 3413 3413 95.087 411 2582 1 chr4D.!!$F1 2171
4 TraesCS1D01G340000 chr3D 553935174 553937355 2181 True 3406 3406 94.884 405 2583 1 chr3D.!!$R1 2178
5 TraesCS1D01G340000 chr5A 619773212 619775392 2180 True 3395 3395 94.792 405 2583 1 chr5A.!!$R1 2178
6 TraesCS1D01G340000 chr2A 704736655 704738849 2194 True 3349 3349 94.240 391 2583 1 chr2A.!!$R1 2192
7 TraesCS1D01G340000 chr7A 661591856 661594045 2189 True 3345 3345 94.230 389 2583 1 chr7A.!!$R1 2194
8 TraesCS1D01G340000 chr2D 350066011 350068175 2164 False 3343 3343 94.495 408 2583 1 chr2D.!!$F1 2175
9 TraesCS1D01G340000 chr2D 498273316 498275492 2176 False 3328 3328 94.292 404 2580 1 chr2D.!!$F2 2176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.032615 TGCCACTTTTGGTTGGTCCT 60.033 50.0 0.0 0.0 45.98 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2184 0.03759 TGGCCGGAGCTAACAACATT 59.962 50.0 5.05 0.0 39.73 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.874744 GATGAGTTACTTAACATCTTACTCCC 57.125 38.462 5.59 0.00 38.62 4.30
26 27 8.611051 ATGAGTTACTTAACATCTTACTCCCT 57.389 34.615 2.10 0.00 38.62 4.20
27 28 8.064336 TGAGTTACTTAACATCTTACTCCCTC 57.936 38.462 2.10 0.00 38.62 4.30
28 29 7.894364 TGAGTTACTTAACATCTTACTCCCTCT 59.106 37.037 2.10 0.00 38.62 3.69
29 30 8.068892 AGTTACTTAACATCTTACTCCCTCTG 57.931 38.462 2.10 0.00 38.62 3.35
30 31 7.674772 AGTTACTTAACATCTTACTCCCTCTGT 59.325 37.037 2.10 0.00 38.62 3.41
31 32 6.532988 ACTTAACATCTTACTCCCTCTGTC 57.467 41.667 0.00 0.00 0.00 3.51
32 33 5.422650 ACTTAACATCTTACTCCCTCTGTCC 59.577 44.000 0.00 0.00 0.00 4.02
33 34 2.379972 ACATCTTACTCCCTCTGTCCG 58.620 52.381 0.00 0.00 0.00 4.79
34 35 2.025226 ACATCTTACTCCCTCTGTCCGA 60.025 50.000 0.00 0.00 0.00 4.55
35 36 2.893215 TCTTACTCCCTCTGTCCGAA 57.107 50.000 0.00 0.00 0.00 4.30
36 37 3.165087 TCTTACTCCCTCTGTCCGAAA 57.835 47.619 0.00 0.00 0.00 3.46
37 38 3.503365 TCTTACTCCCTCTGTCCGAAAA 58.497 45.455 0.00 0.00 0.00 2.29
38 39 4.094476 TCTTACTCCCTCTGTCCGAAAAT 58.906 43.478 0.00 0.00 0.00 1.82
39 40 5.266788 TCTTACTCCCTCTGTCCGAAAATA 58.733 41.667 0.00 0.00 0.00 1.40
40 41 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
41 42 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
42 43 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
43 44 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
44 45 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
45 46 3.933332 CCCTCTGTCCGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
46 47 4.562757 CCCTCTGTCCGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
47 48 5.178797 CCTCTGTCCGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
48 49 5.292101 CCTCTGTCCGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
49 50 5.789521 TCTGTCCGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
50 51 6.227522 TCTGTCCGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
51 52 6.708502 TCTGTCCGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
52 53 7.227711 TCTGTCCGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
53 54 7.881142 TGTCCGAAAATACTTGTCATCAAAAT 58.119 30.769 0.00 0.00 32.87 1.82
54 55 7.807433 TGTCCGAAAATACTTGTCATCAAAATG 59.193 33.333 0.00 0.00 32.87 2.32
55 56 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
56 57 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
57 58 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
65 66 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
101 102 9.978044 AAACTAAAATACGTCTAGATACATCCC 57.022 33.333 0.00 0.00 0.00 3.85
102 103 8.120140 ACTAAAATACGTCTAGATACATCCCC 57.880 38.462 0.00 0.00 0.00 4.81
103 104 7.949006 ACTAAAATACGTCTAGATACATCCCCT 59.051 37.037 0.00 0.00 0.00 4.79
104 105 7.613551 AAAATACGTCTAGATACATCCCCTT 57.386 36.000 0.00 0.00 0.00 3.95
105 106 7.613551 AAATACGTCTAGATACATCCCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
106 107 7.613551 AATACGTCTAGATACATCCCCTTTT 57.386 36.000 0.00 0.00 0.00 2.27
107 108 8.716674 AATACGTCTAGATACATCCCCTTTTA 57.283 34.615 0.00 0.00 0.00 1.52
108 109 8.896722 ATACGTCTAGATACATCCCCTTTTAT 57.103 34.615 0.00 0.00 0.00 1.40
109 110 7.229581 ACGTCTAGATACATCCCCTTTTATC 57.770 40.000 0.00 0.00 0.00 1.75
110 111 6.210984 ACGTCTAGATACATCCCCTTTTATCC 59.789 42.308 0.00 0.00 0.00 2.59
111 112 6.210784 CGTCTAGATACATCCCCTTTTATCCA 59.789 42.308 0.00 0.00 0.00 3.41
112 113 7.093289 CGTCTAGATACATCCCCTTTTATCCAT 60.093 40.741 0.00 0.00 0.00 3.41
113 114 8.606830 GTCTAGATACATCCCCTTTTATCCATT 58.393 37.037 0.00 0.00 0.00 3.16
114 115 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
115 116 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
120 121 8.852671 ACATCCCCTTTTATCCATTTTAATGA 57.147 30.769 4.07 0.00 38.70 2.57
121 122 8.704668 ACATCCCCTTTTATCCATTTTAATGAC 58.295 33.333 4.07 0.00 38.70 3.06
122 123 8.703743 CATCCCCTTTTATCCATTTTAATGACA 58.296 33.333 4.07 0.00 38.70 3.58
123 124 8.671987 TCCCCTTTTATCCATTTTAATGACAA 57.328 30.769 4.07 0.00 38.70 3.18
124 125 9.105844 TCCCCTTTTATCCATTTTAATGACAAA 57.894 29.630 4.07 0.00 38.70 2.83
125 126 9.904198 CCCCTTTTATCCATTTTAATGACAAAT 57.096 29.630 4.07 0.00 38.70 2.32
133 134 9.762933 ATCCATTTTAATGACAAATATTTCCGG 57.237 29.630 0.00 0.00 38.70 5.14
134 135 8.972127 TCCATTTTAATGACAAATATTTCCGGA 58.028 29.630 0.00 0.00 38.70 5.14
135 136 9.030301 CCATTTTAATGACAAATATTTCCGGAC 57.970 33.333 1.83 0.00 38.70 4.79
136 137 8.742188 CATTTTAATGACAAATATTTCCGGACG 58.258 33.333 1.83 0.00 38.70 4.79
137 138 4.893424 AATGACAAATATTTCCGGACGG 57.107 40.909 1.83 3.96 0.00 4.79
138 139 3.613494 TGACAAATATTTCCGGACGGA 57.387 42.857 1.83 9.76 43.52 4.69
139 140 3.527533 TGACAAATATTTCCGGACGGAG 58.472 45.455 13.64 3.15 46.06 4.63
140 141 2.870411 GACAAATATTTCCGGACGGAGG 59.130 50.000 13.64 0.00 46.06 4.30
141 142 2.502538 ACAAATATTTCCGGACGGAGGA 59.497 45.455 13.64 7.39 46.06 3.71
142 143 3.054948 ACAAATATTTCCGGACGGAGGAA 60.055 43.478 13.64 6.93 46.06 3.36
146 147 2.571548 TTCCGGACGGAGGAAGTAC 58.428 57.895 13.64 0.00 46.06 2.73
147 148 0.251297 TTCCGGACGGAGGAAGTACA 60.251 55.000 13.64 0.00 46.06 2.90
148 149 0.251297 TCCGGACGGAGGAAGTACAA 60.251 55.000 9.76 0.00 39.76 2.41
149 150 0.604578 CCGGACGGAGGAAGTACAAA 59.395 55.000 4.40 0.00 37.50 2.83
150 151 1.001181 CCGGACGGAGGAAGTACAAAA 59.999 52.381 4.40 0.00 37.50 2.44
151 152 2.354403 CCGGACGGAGGAAGTACAAAAT 60.354 50.000 4.40 0.00 37.50 1.82
152 153 3.332034 CGGACGGAGGAAGTACAAAATT 58.668 45.455 0.00 0.00 0.00 1.82
153 154 4.497300 CGGACGGAGGAAGTACAAAATTA 58.503 43.478 0.00 0.00 0.00 1.40
154 155 4.328169 CGGACGGAGGAAGTACAAAATTAC 59.672 45.833 0.00 0.00 0.00 1.89
155 156 5.485620 GGACGGAGGAAGTACAAAATTACT 58.514 41.667 0.00 0.00 33.48 2.24
156 157 5.936372 GGACGGAGGAAGTACAAAATTACTT 59.064 40.000 0.00 0.00 43.59 2.24
157 158 6.128363 GGACGGAGGAAGTACAAAATTACTTG 60.128 42.308 0.32 0.00 41.46 3.16
158 159 6.527423 ACGGAGGAAGTACAAAATTACTTGA 58.473 36.000 0.32 0.00 41.46 3.02
159 160 6.649557 ACGGAGGAAGTACAAAATTACTTGAG 59.350 38.462 0.32 0.00 41.46 3.02
160 161 6.402226 CGGAGGAAGTACAAAATTACTTGAGC 60.402 42.308 0.32 0.00 41.46 4.26
161 162 6.127980 GGAGGAAGTACAAAATTACTTGAGCC 60.128 42.308 0.32 0.00 41.46 4.70
162 163 6.303839 AGGAAGTACAAAATTACTTGAGCCA 58.696 36.000 0.32 0.00 41.46 4.75
163 164 6.431234 AGGAAGTACAAAATTACTTGAGCCAG 59.569 38.462 0.32 0.00 41.46 4.85
164 165 6.206829 GGAAGTACAAAATTACTTGAGCCAGT 59.793 38.462 0.32 0.00 41.46 4.00
165 166 7.255486 GGAAGTACAAAATTACTTGAGCCAGTT 60.255 37.037 0.32 0.00 41.46 3.16
166 167 7.582667 AGTACAAAATTACTTGAGCCAGTTT 57.417 32.000 0.00 0.00 0.00 2.66
167 168 7.425606 AGTACAAAATTACTTGAGCCAGTTTG 58.574 34.615 0.00 0.00 0.00 2.93
168 169 5.049828 ACAAAATTACTTGAGCCAGTTTGC 58.950 37.500 0.00 0.00 0.00 3.68
169 170 5.163416 ACAAAATTACTTGAGCCAGTTTGCT 60.163 36.000 0.00 0.00 46.37 3.91
175 176 3.736483 AGCCAGTTTGCTCGTGTG 58.264 55.556 0.00 0.00 36.75 3.82
176 177 1.153168 AGCCAGTTTGCTCGTGTGT 60.153 52.632 0.00 0.00 36.75 3.72
177 178 0.748005 AGCCAGTTTGCTCGTGTGTT 60.748 50.000 0.00 0.00 36.75 3.32
178 179 0.317020 GCCAGTTTGCTCGTGTGTTC 60.317 55.000 0.00 0.00 0.00 3.18
179 180 1.299541 CCAGTTTGCTCGTGTGTTCT 58.700 50.000 0.00 0.00 0.00 3.01
180 181 1.003545 CCAGTTTGCTCGTGTGTTCTG 60.004 52.381 0.00 0.00 0.00 3.02
181 182 1.003545 CAGTTTGCTCGTGTGTTCTGG 60.004 52.381 0.00 0.00 0.00 3.86
182 183 1.134521 AGTTTGCTCGTGTGTTCTGGA 60.135 47.619 0.00 0.00 0.00 3.86
183 184 1.873591 GTTTGCTCGTGTGTTCTGGAT 59.126 47.619 0.00 0.00 0.00 3.41
184 185 2.254546 TTGCTCGTGTGTTCTGGATT 57.745 45.000 0.00 0.00 0.00 3.01
185 186 1.511850 TGCTCGTGTGTTCTGGATTG 58.488 50.000 0.00 0.00 0.00 2.67
186 187 0.166814 GCTCGTGTGTTCTGGATTGC 59.833 55.000 0.00 0.00 0.00 3.56
187 188 1.511850 CTCGTGTGTTCTGGATTGCA 58.488 50.000 0.00 0.00 0.00 4.08
188 189 2.079158 CTCGTGTGTTCTGGATTGCAT 58.921 47.619 0.00 0.00 0.00 3.96
189 190 2.485426 CTCGTGTGTTCTGGATTGCATT 59.515 45.455 0.00 0.00 0.00 3.56
190 191 2.884012 TCGTGTGTTCTGGATTGCATTT 59.116 40.909 0.00 0.00 0.00 2.32
191 192 2.981805 CGTGTGTTCTGGATTGCATTTG 59.018 45.455 0.00 0.00 0.00 2.32
192 193 2.733026 GTGTGTTCTGGATTGCATTTGC 59.267 45.455 0.00 0.00 42.50 3.68
193 194 2.288948 TGTGTTCTGGATTGCATTTGCC 60.289 45.455 0.00 0.00 41.18 4.52
194 195 1.969208 TGTTCTGGATTGCATTTGCCA 59.031 42.857 0.00 0.00 41.18 4.92
195 196 2.288948 TGTTCTGGATTGCATTTGCCAC 60.289 45.455 0.00 0.00 41.18 5.01
196 197 1.927487 TCTGGATTGCATTTGCCACT 58.073 45.000 0.00 0.00 41.18 4.00
197 198 2.250031 TCTGGATTGCATTTGCCACTT 58.750 42.857 0.00 0.00 41.18 3.16
198 199 2.633967 TCTGGATTGCATTTGCCACTTT 59.366 40.909 0.00 0.00 41.18 2.66
199 200 3.071312 TCTGGATTGCATTTGCCACTTTT 59.929 39.130 0.00 0.00 41.18 2.27
200 201 3.139850 TGGATTGCATTTGCCACTTTTG 58.860 40.909 0.00 0.00 41.18 2.44
202 203 2.706339 TTGCATTTGCCACTTTTGGT 57.294 40.000 0.00 0.00 45.98 3.67
203 204 2.706339 TGCATTTGCCACTTTTGGTT 57.294 40.000 0.00 0.00 45.98 3.67
204 205 2.286872 TGCATTTGCCACTTTTGGTTG 58.713 42.857 0.00 0.00 45.98 3.77
205 206 1.603326 GCATTTGCCACTTTTGGTTGG 59.397 47.619 0.00 0.00 45.98 3.77
206 207 2.916640 CATTTGCCACTTTTGGTTGGT 58.083 42.857 0.00 0.00 45.98 3.67
207 208 2.682155 TTTGCCACTTTTGGTTGGTC 57.318 45.000 0.00 0.00 45.98 4.02
208 209 0.827368 TTGCCACTTTTGGTTGGTCC 59.173 50.000 0.00 0.00 45.98 4.46
209 210 0.032615 TGCCACTTTTGGTTGGTCCT 60.033 50.000 0.00 0.00 45.98 3.85
210 211 1.119684 GCCACTTTTGGTTGGTCCTT 58.880 50.000 0.00 0.00 45.98 3.36
211 212 2.312390 GCCACTTTTGGTTGGTCCTTA 58.688 47.619 0.00 0.00 45.98 2.69
212 213 2.897326 GCCACTTTTGGTTGGTCCTTAT 59.103 45.455 0.00 0.00 45.98 1.73
213 214 3.306019 GCCACTTTTGGTTGGTCCTTATG 60.306 47.826 0.00 0.00 45.98 1.90
214 215 3.258123 CCACTTTTGGTTGGTCCTTATGG 59.742 47.826 0.00 0.00 38.23 2.74
215 216 4.148838 CACTTTTGGTTGGTCCTTATGGA 58.851 43.478 0.00 0.00 40.69 3.41
234 235 5.523438 TGGACCACCAGAAACAAATTTAC 57.477 39.130 0.00 0.00 41.77 2.01
235 236 4.036971 TGGACCACCAGAAACAAATTTACG 59.963 41.667 0.00 0.00 41.77 3.18
236 237 4.276431 GGACCACCAGAAACAAATTTACGA 59.724 41.667 0.00 0.00 35.97 3.43
237 238 5.048294 GGACCACCAGAAACAAATTTACGAT 60.048 40.000 0.00 0.00 35.97 3.73
238 239 6.399639 ACCACCAGAAACAAATTTACGATT 57.600 33.333 0.00 0.00 0.00 3.34
239 240 6.212955 ACCACCAGAAACAAATTTACGATTG 58.787 36.000 0.00 0.00 0.00 2.67
240 241 6.039941 ACCACCAGAAACAAATTTACGATTGA 59.960 34.615 0.00 0.00 0.00 2.57
241 242 6.920758 CCACCAGAAACAAATTTACGATTGAA 59.079 34.615 0.00 0.00 0.00 2.69
242 243 7.096230 CCACCAGAAACAAATTTACGATTGAAC 60.096 37.037 0.00 0.00 0.00 3.18
243 244 7.433719 CACCAGAAACAAATTTACGATTGAACA 59.566 33.333 0.00 0.00 0.00 3.18
244 245 7.434013 ACCAGAAACAAATTTACGATTGAACAC 59.566 33.333 0.00 0.00 0.00 3.32
245 246 7.647715 CCAGAAACAAATTTACGATTGAACACT 59.352 33.333 0.00 0.00 0.00 3.55
246 247 9.019764 CAGAAACAAATTTACGATTGAACACTT 57.980 29.630 0.00 0.00 0.00 3.16
251 252 9.620660 ACAAATTTACGATTGAACACTTATTCC 57.379 29.630 0.00 0.00 0.00 3.01
252 253 9.072294 CAAATTTACGATTGAACACTTATTCCC 57.928 33.333 0.00 0.00 0.00 3.97
253 254 6.411630 TTTACGATTGAACACTTATTCCCG 57.588 37.500 0.00 0.00 0.00 5.14
254 255 4.196626 ACGATTGAACACTTATTCCCGA 57.803 40.909 0.00 0.00 0.00 5.14
255 256 4.571919 ACGATTGAACACTTATTCCCGAA 58.428 39.130 0.00 0.00 0.00 4.30
256 257 4.390909 ACGATTGAACACTTATTCCCGAAC 59.609 41.667 0.00 0.00 0.00 3.95
257 258 4.630069 CGATTGAACACTTATTCCCGAACT 59.370 41.667 0.00 0.00 0.00 3.01
258 259 5.445939 CGATTGAACACTTATTCCCGAACTG 60.446 44.000 0.00 0.00 0.00 3.16
259 260 4.345859 TGAACACTTATTCCCGAACTGT 57.654 40.909 0.00 0.00 0.00 3.55
260 261 4.312443 TGAACACTTATTCCCGAACTGTC 58.688 43.478 0.00 0.00 0.00 3.51
261 262 3.329929 ACACTTATTCCCGAACTGTCC 57.670 47.619 0.00 0.00 0.00 4.02
262 263 2.904434 ACACTTATTCCCGAACTGTCCT 59.096 45.455 0.00 0.00 0.00 3.85
263 264 3.326880 ACACTTATTCCCGAACTGTCCTT 59.673 43.478 0.00 0.00 0.00 3.36
264 265 3.933332 CACTTATTCCCGAACTGTCCTTC 59.067 47.826 0.00 0.00 0.00 3.46
265 266 3.838903 ACTTATTCCCGAACTGTCCTTCT 59.161 43.478 0.00 0.00 0.00 2.85
266 267 5.021458 ACTTATTCCCGAACTGTCCTTCTA 58.979 41.667 0.00 0.00 0.00 2.10
267 268 5.482878 ACTTATTCCCGAACTGTCCTTCTAA 59.517 40.000 0.00 0.00 0.00 2.10
268 269 6.156429 ACTTATTCCCGAACTGTCCTTCTAAT 59.844 38.462 0.00 0.00 0.00 1.73
269 270 4.903045 TTCCCGAACTGTCCTTCTAATT 57.097 40.909 0.00 0.00 0.00 1.40
270 271 4.202245 TCCCGAACTGTCCTTCTAATTG 57.798 45.455 0.00 0.00 0.00 2.32
271 272 3.581332 TCCCGAACTGTCCTTCTAATTGT 59.419 43.478 0.00 0.00 0.00 2.71
272 273 4.041198 TCCCGAACTGTCCTTCTAATTGTT 59.959 41.667 0.00 0.00 0.00 2.83
273 274 4.760204 CCCGAACTGTCCTTCTAATTGTTT 59.240 41.667 0.00 0.00 0.00 2.83
274 275 5.334879 CCCGAACTGTCCTTCTAATTGTTTG 60.335 44.000 0.00 0.00 0.00 2.93
275 276 5.238650 CCGAACTGTCCTTCTAATTGTTTGT 59.761 40.000 0.00 0.00 0.00 2.83
276 277 6.238648 CCGAACTGTCCTTCTAATTGTTTGTT 60.239 38.462 0.00 0.00 0.00 2.83
277 278 6.851330 CGAACTGTCCTTCTAATTGTTTGTTC 59.149 38.462 0.00 0.00 0.00 3.18
278 279 7.466725 CGAACTGTCCTTCTAATTGTTTGTTCA 60.467 37.037 0.00 0.00 32.09 3.18
279 280 7.264373 ACTGTCCTTCTAATTGTTTGTTCAG 57.736 36.000 0.00 0.00 0.00 3.02
280 281 7.054124 ACTGTCCTTCTAATTGTTTGTTCAGA 58.946 34.615 0.00 0.00 0.00 3.27
281 282 7.556275 ACTGTCCTTCTAATTGTTTGTTCAGAA 59.444 33.333 0.00 0.00 0.00 3.02
282 283 8.463930 TGTCCTTCTAATTGTTTGTTCAGAAT 57.536 30.769 0.00 0.00 0.00 2.40
283 284 8.352201 TGTCCTTCTAATTGTTTGTTCAGAATG 58.648 33.333 0.00 0.00 37.54 2.67
284 285 7.809806 GTCCTTCTAATTGTTTGTTCAGAATGG 59.190 37.037 0.00 0.00 36.16 3.16
285 286 7.505585 TCCTTCTAATTGTTTGTTCAGAATGGT 59.494 33.333 0.00 0.00 36.16 3.55
286 287 8.792633 CCTTCTAATTGTTTGTTCAGAATGGTA 58.207 33.333 0.00 0.00 36.16 3.25
287 288 9.831737 CTTCTAATTGTTTGTTCAGAATGGTAG 57.168 33.333 0.00 0.00 36.16 3.18
288 289 8.918202 TCTAATTGTTTGTTCAGAATGGTAGT 57.082 30.769 0.00 0.00 36.16 2.73
289 290 9.349713 TCTAATTGTTTGTTCAGAATGGTAGTT 57.650 29.630 0.00 0.00 36.16 2.24
293 294 9.912634 ATTGTTTGTTCAGAATGGTAGTTATTG 57.087 29.630 0.00 0.00 36.16 1.90
294 295 8.458573 TGTTTGTTCAGAATGGTAGTTATTGT 57.541 30.769 0.00 0.00 36.16 2.71
295 296 8.564574 TGTTTGTTCAGAATGGTAGTTATTGTC 58.435 33.333 0.00 0.00 36.16 3.18
296 297 6.961359 TGTTCAGAATGGTAGTTATTGTCG 57.039 37.500 0.00 0.00 36.16 4.35
297 298 6.693466 TGTTCAGAATGGTAGTTATTGTCGA 58.307 36.000 0.00 0.00 36.16 4.20
298 299 6.811665 TGTTCAGAATGGTAGTTATTGTCGAG 59.188 38.462 0.00 0.00 36.16 4.04
299 300 5.348986 TCAGAATGGTAGTTATTGTCGAGC 58.651 41.667 0.00 0.00 36.16 5.03
300 301 5.105513 TCAGAATGGTAGTTATTGTCGAGCA 60.106 40.000 0.00 0.00 36.16 4.26
301 302 5.233050 CAGAATGGTAGTTATTGTCGAGCAG 59.767 44.000 0.00 0.00 0.00 4.24
302 303 4.737855 ATGGTAGTTATTGTCGAGCAGT 57.262 40.909 0.00 0.00 0.00 4.40
303 304 3.845178 TGGTAGTTATTGTCGAGCAGTG 58.155 45.455 0.00 0.00 0.00 3.66
304 305 3.187700 GGTAGTTATTGTCGAGCAGTGG 58.812 50.000 0.00 0.00 0.00 4.00
305 306 3.119245 GGTAGTTATTGTCGAGCAGTGGA 60.119 47.826 0.00 0.00 0.00 4.02
306 307 3.238108 AGTTATTGTCGAGCAGTGGAG 57.762 47.619 0.00 0.00 0.00 3.86
307 308 1.661112 GTTATTGTCGAGCAGTGGAGC 59.339 52.381 0.00 0.00 0.00 4.70
308 309 0.175760 TATTGTCGAGCAGTGGAGCC 59.824 55.000 0.00 0.00 34.23 4.70
309 310 1.548357 ATTGTCGAGCAGTGGAGCCT 61.548 55.000 0.00 0.00 34.23 4.58
310 311 1.758440 TTGTCGAGCAGTGGAGCCTT 61.758 55.000 0.00 0.00 34.23 4.35
311 312 1.446966 GTCGAGCAGTGGAGCCTTC 60.447 63.158 0.00 0.00 34.23 3.46
312 313 1.607756 TCGAGCAGTGGAGCCTTCT 60.608 57.895 0.00 0.00 34.23 2.85
313 314 1.153667 CGAGCAGTGGAGCCTTCTC 60.154 63.158 0.00 0.00 38.62 2.87
314 315 1.153667 GAGCAGTGGAGCCTTCTCG 60.154 63.158 0.00 0.00 40.26 4.04
315 316 1.882989 GAGCAGTGGAGCCTTCTCGT 61.883 60.000 0.00 0.00 40.26 4.18
316 317 1.004440 GCAGTGGAGCCTTCTCGTT 60.004 57.895 0.00 0.00 40.26 3.85
317 318 0.246635 GCAGTGGAGCCTTCTCGTTA 59.753 55.000 0.00 0.00 40.26 3.18
318 319 1.337823 GCAGTGGAGCCTTCTCGTTAA 60.338 52.381 0.00 0.00 40.26 2.01
319 320 2.870435 GCAGTGGAGCCTTCTCGTTAAA 60.870 50.000 0.00 0.00 40.26 1.52
320 321 2.996621 CAGTGGAGCCTTCTCGTTAAAG 59.003 50.000 0.00 0.00 40.26 1.85
321 322 2.633481 AGTGGAGCCTTCTCGTTAAAGT 59.367 45.455 0.00 0.00 40.26 2.66
322 323 3.071167 AGTGGAGCCTTCTCGTTAAAGTT 59.929 43.478 0.00 0.00 40.26 2.66
323 324 3.186613 GTGGAGCCTTCTCGTTAAAGTTG 59.813 47.826 0.00 0.00 40.26 3.16
324 325 3.181458 TGGAGCCTTCTCGTTAAAGTTGT 60.181 43.478 0.00 0.00 40.26 3.32
325 326 3.186613 GGAGCCTTCTCGTTAAAGTTGTG 59.813 47.826 0.00 0.00 40.26 3.33
326 327 3.139077 AGCCTTCTCGTTAAAGTTGTGG 58.861 45.455 0.00 0.00 0.00 4.17
327 328 3.135994 GCCTTCTCGTTAAAGTTGTGGA 58.864 45.455 0.00 0.00 0.00 4.02
328 329 3.751698 GCCTTCTCGTTAAAGTTGTGGAT 59.248 43.478 0.00 0.00 0.00 3.41
329 330 4.378459 GCCTTCTCGTTAAAGTTGTGGATG 60.378 45.833 0.00 0.00 0.00 3.51
330 331 4.755123 CCTTCTCGTTAAAGTTGTGGATGT 59.245 41.667 0.00 0.00 0.00 3.06
331 332 5.238650 CCTTCTCGTTAAAGTTGTGGATGTT 59.761 40.000 0.00 0.00 0.00 2.71
332 333 5.666969 TCTCGTTAAAGTTGTGGATGTTG 57.333 39.130 0.00 0.00 0.00 3.33
333 334 4.513692 TCTCGTTAAAGTTGTGGATGTTGG 59.486 41.667 0.00 0.00 0.00 3.77
334 335 4.200874 TCGTTAAAGTTGTGGATGTTGGT 58.799 39.130 0.00 0.00 0.00 3.67
335 336 4.035792 TCGTTAAAGTTGTGGATGTTGGTG 59.964 41.667 0.00 0.00 0.00 4.17
336 337 4.201970 CGTTAAAGTTGTGGATGTTGGTGT 60.202 41.667 0.00 0.00 0.00 4.16
337 338 5.656480 GTTAAAGTTGTGGATGTTGGTGTT 58.344 37.500 0.00 0.00 0.00 3.32
338 339 3.799281 AAGTTGTGGATGTTGGTGTTG 57.201 42.857 0.00 0.00 0.00 3.33
339 340 2.733956 AGTTGTGGATGTTGGTGTTGT 58.266 42.857 0.00 0.00 0.00 3.32
340 341 2.687935 AGTTGTGGATGTTGGTGTTGTC 59.312 45.455 0.00 0.00 0.00 3.18
341 342 2.425312 GTTGTGGATGTTGGTGTTGTCA 59.575 45.455 0.00 0.00 0.00 3.58
342 343 2.020720 TGTGGATGTTGGTGTTGTCAC 58.979 47.619 0.00 0.00 43.19 3.67
362 363 2.171003 CCTTGGTGGTCTCCAAAATCC 58.829 52.381 6.06 0.00 45.26 3.01
363 364 1.812571 CTTGGTGGTCTCCAAAATCCG 59.187 52.381 6.06 0.00 45.26 4.18
364 365 0.768622 TGGTGGTCTCCAAAATCCGT 59.231 50.000 0.00 0.00 34.18 4.69
365 366 1.165270 GGTGGTCTCCAAAATCCGTG 58.835 55.000 0.00 0.00 34.18 4.94
366 367 0.521735 GTGGTCTCCAAAATCCGTGC 59.478 55.000 0.00 0.00 34.18 5.34
367 368 0.608035 TGGTCTCCAAAATCCGTGCC 60.608 55.000 0.00 0.00 0.00 5.01
368 369 0.322546 GGTCTCCAAAATCCGTGCCT 60.323 55.000 0.00 0.00 0.00 4.75
369 370 1.087501 GTCTCCAAAATCCGTGCCTC 58.912 55.000 0.00 0.00 0.00 4.70
370 371 0.035439 TCTCCAAAATCCGTGCCTCC 60.035 55.000 0.00 0.00 0.00 4.30
371 372 1.369091 CTCCAAAATCCGTGCCTCCG 61.369 60.000 0.00 0.00 0.00 4.63
372 373 2.485122 CAAAATCCGTGCCTCCGC 59.515 61.111 0.00 0.00 0.00 5.54
373 374 2.040544 CAAAATCCGTGCCTCCGCT 61.041 57.895 0.00 0.00 35.36 5.52
374 375 0.742990 CAAAATCCGTGCCTCCGCTA 60.743 55.000 0.00 0.00 35.36 4.26
375 376 0.180406 AAAATCCGTGCCTCCGCTAT 59.820 50.000 0.00 0.00 35.36 2.97
376 377 0.249911 AAATCCGTGCCTCCGCTATC 60.250 55.000 0.00 0.00 35.36 2.08
377 378 1.399744 AATCCGTGCCTCCGCTATCA 61.400 55.000 0.00 0.00 35.36 2.15
378 379 2.088674 ATCCGTGCCTCCGCTATCAC 62.089 60.000 0.00 0.00 35.36 3.06
379 380 2.279517 CGTGCCTCCGCTATCACC 60.280 66.667 0.00 0.00 35.36 4.02
380 381 2.109181 GTGCCTCCGCTATCACCC 59.891 66.667 0.00 0.00 35.36 4.61
381 382 2.364973 TGCCTCCGCTATCACCCA 60.365 61.111 0.00 0.00 35.36 4.51
382 383 2.423446 GCCTCCGCTATCACCCAG 59.577 66.667 0.00 0.00 0.00 4.45
383 384 2.134287 GCCTCCGCTATCACCCAGA 61.134 63.158 0.00 0.00 0.00 3.86
384 385 1.686325 GCCTCCGCTATCACCCAGAA 61.686 60.000 0.00 0.00 0.00 3.02
385 386 0.105039 CCTCCGCTATCACCCAGAAC 59.895 60.000 0.00 0.00 0.00 3.01
386 387 0.105039 CTCCGCTATCACCCAGAACC 59.895 60.000 0.00 0.00 0.00 3.62
387 388 1.146263 CCGCTATCACCCAGAACCC 59.854 63.158 0.00 0.00 0.00 4.11
388 389 1.338136 CCGCTATCACCCAGAACCCT 61.338 60.000 0.00 0.00 0.00 4.34
389 390 0.179073 CGCTATCACCCAGAACCCTG 60.179 60.000 0.00 0.00 40.09 4.45
390 391 1.204146 GCTATCACCCAGAACCCTGA 58.796 55.000 0.00 0.00 43.02 3.86
391 392 1.771255 GCTATCACCCAGAACCCTGAT 59.229 52.381 0.00 0.00 43.02 2.90
392 393 2.486191 GCTATCACCCAGAACCCTGATG 60.486 54.545 0.00 0.00 43.02 3.07
393 394 1.971149 ATCACCCAGAACCCTGATGA 58.029 50.000 0.00 0.00 43.02 2.92
394 395 1.279496 TCACCCAGAACCCTGATGAG 58.721 55.000 0.00 0.00 43.02 2.90
395 396 1.203300 TCACCCAGAACCCTGATGAGA 60.203 52.381 0.00 0.00 43.02 3.27
396 397 1.630369 CACCCAGAACCCTGATGAGAA 59.370 52.381 0.00 0.00 43.02 2.87
397 398 2.240667 CACCCAGAACCCTGATGAGAAT 59.759 50.000 0.00 0.00 43.02 2.40
398 399 3.455910 CACCCAGAACCCTGATGAGAATA 59.544 47.826 0.00 0.00 43.02 1.75
399 400 3.713764 ACCCAGAACCCTGATGAGAATAG 59.286 47.826 0.00 0.00 43.02 1.73
400 401 3.713764 CCCAGAACCCTGATGAGAATAGT 59.286 47.826 0.00 0.00 43.02 2.12
409 410 5.936956 CCCTGATGAGAATAGTCATTAAGGC 59.063 44.000 9.47 0.00 38.54 4.35
486 488 0.461961 TTTGGTTGCCTGGTTTTCCG 59.538 50.000 0.00 0.00 44.36 4.30
559 561 1.940883 AACGCTCGGATCGGCAGTTA 61.941 55.000 6.19 0.00 0.00 2.24
582 584 4.074526 GAGCCAGGCTGAGTGCGA 62.075 66.667 22.26 0.00 39.88 5.10
737 747 1.086565 TCCCTACTACCTCACCACCA 58.913 55.000 0.00 0.00 0.00 4.17
921 947 4.382541 GCACCCCCTCCCCCTTTG 62.383 72.222 0.00 0.00 0.00 2.77
922 948 2.863988 CACCCCCTCCCCCTTTGT 60.864 66.667 0.00 0.00 0.00 2.83
923 949 2.863988 ACCCCCTCCCCCTTTGTG 60.864 66.667 0.00 0.00 0.00 3.33
1260 1286 1.613630 GACCTTCAGGAGCAGGGGA 60.614 63.158 0.00 0.00 38.94 4.81
1343 1372 1.559682 GCCATAACCAGAGGTTCAGGA 59.440 52.381 18.28 0.00 43.05 3.86
1350 1379 2.169352 ACCAGAGGTTCAGGATCATTCG 59.831 50.000 0.00 0.00 27.29 3.34
1733 1764 8.484641 TGACTTTGATCTGAAGTTCACATATC 57.515 34.615 13.75 6.35 37.46 1.63
1748 1779 1.134007 CATATCTGTTGGCTGGCTGGA 60.134 52.381 2.00 0.00 0.00 3.86
1831 1862 1.843368 TCCCCGACGACAAGTTCTAT 58.157 50.000 0.00 0.00 0.00 1.98
1887 1918 4.469469 TTCTTCCACCCTTCAGGAAAAT 57.531 40.909 0.00 0.00 42.91 1.82
1945 1976 0.901124 CTAGGACTGCACAGGAGCTT 59.099 55.000 2.21 0.00 34.99 3.74
1986 2017 5.105146 CCAGCCTTAGAGTAACTGTTGAGAT 60.105 44.000 2.69 0.00 0.00 2.75
2056 2087 2.335681 TCCACCCATACTCCACTCAA 57.664 50.000 0.00 0.00 0.00 3.02
2060 2091 3.600388 CACCCATACTCCACTCAAGTTC 58.400 50.000 0.00 0.00 0.00 3.01
2129 2160 1.804151 GCTTTGATGAACACGTGCCTA 59.196 47.619 17.22 1.58 0.00 3.93
2238 2270 1.676678 GAGTGGGCAGAGGCGATGTA 61.677 60.000 0.00 0.00 42.47 2.29
2249 2281 3.447586 AGAGGCGATGTAGCTTAACAGAA 59.552 43.478 0.00 0.00 37.29 3.02
2265 2297 3.825328 ACAGAAGTCAGTGCAGGATTTT 58.175 40.909 0.00 0.00 0.00 1.82
2288 2325 7.880160 TTGAAGAAGATGGAAGAAGAACAAA 57.120 32.000 0.00 0.00 0.00 2.83
2330 2372 2.847327 AGCAGCAGCAGAAGTAGAAA 57.153 45.000 3.17 0.00 45.49 2.52
2352 2400 3.669939 AGAGGAGAGGAAGAGGAAGAG 57.330 52.381 0.00 0.00 0.00 2.85
2362 2422 2.173126 AGAGGAAGAGCTGGTAGCAT 57.827 50.000 0.00 0.00 45.56 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.697292 AGGGAGTAAGATGTTAAGTAACTCATC 58.303 37.037 5.21 0.00 37.12 2.92
1 2 8.611051 AGGGAGTAAGATGTTAAGTAACTCAT 57.389 34.615 5.21 0.00 37.12 2.90
2 3 7.894364 AGAGGGAGTAAGATGTTAAGTAACTCA 59.106 37.037 5.21 0.00 37.12 3.41
4 5 7.674772 ACAGAGGGAGTAAGATGTTAAGTAACT 59.325 37.037 3.07 0.00 37.12 2.24
5 6 7.838884 ACAGAGGGAGTAAGATGTTAAGTAAC 58.161 38.462 0.00 0.00 36.74 2.50
6 7 7.123847 GGACAGAGGGAGTAAGATGTTAAGTAA 59.876 40.741 0.00 0.00 0.00 2.24
7 8 6.606395 GGACAGAGGGAGTAAGATGTTAAGTA 59.394 42.308 0.00 0.00 0.00 2.24
9 10 5.450688 CGGACAGAGGGAGTAAGATGTTAAG 60.451 48.000 0.00 0.00 0.00 1.85
10 11 4.401519 CGGACAGAGGGAGTAAGATGTTAA 59.598 45.833 0.00 0.00 0.00 2.01
11 12 3.952323 CGGACAGAGGGAGTAAGATGTTA 59.048 47.826 0.00 0.00 0.00 2.41
12 13 2.761208 CGGACAGAGGGAGTAAGATGTT 59.239 50.000 0.00 0.00 0.00 2.71
14 15 2.656002 TCGGACAGAGGGAGTAAGATG 58.344 52.381 0.00 0.00 0.00 2.90
15 16 3.383698 TTCGGACAGAGGGAGTAAGAT 57.616 47.619 0.00 0.00 0.00 2.40
16 17 2.893215 TTCGGACAGAGGGAGTAAGA 57.107 50.000 0.00 0.00 0.00 2.10
17 18 3.955650 TTTTCGGACAGAGGGAGTAAG 57.044 47.619 0.00 0.00 0.00 2.34
18 19 5.021458 AGTATTTTCGGACAGAGGGAGTAA 58.979 41.667 0.00 0.00 0.00 2.24
19 20 4.607239 AGTATTTTCGGACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
20 21 3.442076 AGTATTTTCGGACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
22 23 3.581332 ACAAGTATTTTCGGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
23 24 3.933332 GACAAGTATTTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
24 25 4.566004 TGACAAGTATTTTCGGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
25 26 5.869344 TGATGACAAGTATTTTCGGACAGAG 59.131 40.000 0.00 0.00 0.00 3.35
26 27 5.789521 TGATGACAAGTATTTTCGGACAGA 58.210 37.500 0.00 0.00 0.00 3.41
27 28 6.480524 TTGATGACAAGTATTTTCGGACAG 57.519 37.500 0.00 0.00 0.00 3.51
28 29 6.869315 TTTGATGACAAGTATTTTCGGACA 57.131 33.333 0.00 0.00 37.32 4.02
29 30 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
30 31 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
31 32 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
32 33 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
39 40 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
75 76 9.978044 GGGATGTATCTAGACGTATTTTAGTTT 57.022 33.333 0.00 0.00 0.00 2.66
76 77 8.583296 GGGGATGTATCTAGACGTATTTTAGTT 58.417 37.037 0.00 0.00 0.00 2.24
77 78 7.949006 AGGGGATGTATCTAGACGTATTTTAGT 59.051 37.037 0.00 0.00 0.00 2.24
78 79 8.350852 AGGGGATGTATCTAGACGTATTTTAG 57.649 38.462 0.00 0.00 0.00 1.85
79 80 8.716674 AAGGGGATGTATCTAGACGTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
80 81 7.613551 AAGGGGATGTATCTAGACGTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
81 82 7.613551 AAAGGGGATGTATCTAGACGTATTT 57.386 36.000 0.00 0.00 0.00 1.40
82 83 7.613551 AAAAGGGGATGTATCTAGACGTATT 57.386 36.000 0.00 0.00 0.00 1.89
83 84 8.896722 ATAAAAGGGGATGTATCTAGACGTAT 57.103 34.615 0.00 0.00 0.00 3.06
84 85 7.395489 GGATAAAAGGGGATGTATCTAGACGTA 59.605 40.741 0.00 0.00 0.00 3.57
85 86 6.210984 GGATAAAAGGGGATGTATCTAGACGT 59.789 42.308 0.00 0.00 0.00 4.34
86 87 6.210784 TGGATAAAAGGGGATGTATCTAGACG 59.789 42.308 0.00 0.00 0.00 4.18
87 88 7.554959 TGGATAAAAGGGGATGTATCTAGAC 57.445 40.000 0.00 0.00 0.00 2.59
88 89 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
89 90 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
94 95 9.944079 TCATTAAAATGGATAAAAGGGGATGTA 57.056 29.630 3.00 0.00 37.03 2.29
95 96 8.704668 GTCATTAAAATGGATAAAAGGGGATGT 58.295 33.333 3.00 0.00 37.03 3.06
96 97 8.703743 TGTCATTAAAATGGATAAAAGGGGATG 58.296 33.333 3.00 0.00 37.03 3.51
97 98 8.852671 TGTCATTAAAATGGATAAAAGGGGAT 57.147 30.769 3.00 0.00 37.03 3.85
98 99 8.671987 TTGTCATTAAAATGGATAAAAGGGGA 57.328 30.769 3.00 0.00 37.03 4.81
99 100 9.904198 ATTTGTCATTAAAATGGATAAAAGGGG 57.096 29.630 3.00 0.00 37.03 4.79
107 108 9.762933 CCGGAAATATTTGTCATTAAAATGGAT 57.237 29.630 5.17 0.00 37.03 3.41
108 109 8.972127 TCCGGAAATATTTGTCATTAAAATGGA 58.028 29.630 0.00 0.00 37.03 3.41
109 110 9.030301 GTCCGGAAATATTTGTCATTAAAATGG 57.970 33.333 5.23 0.00 37.03 3.16
110 111 8.742188 CGTCCGGAAATATTTGTCATTAAAATG 58.258 33.333 5.23 0.00 37.75 2.32
111 112 7.918562 CCGTCCGGAAATATTTGTCATTAAAAT 59.081 33.333 5.23 0.00 37.50 1.82
112 113 7.120873 TCCGTCCGGAAATATTTGTCATTAAAA 59.879 33.333 5.23 0.00 42.05 1.52
113 114 6.598457 TCCGTCCGGAAATATTTGTCATTAAA 59.402 34.615 5.23 0.00 42.05 1.52
114 115 6.114089 TCCGTCCGGAAATATTTGTCATTAA 58.886 36.000 5.23 0.00 42.05 1.40
115 116 5.672503 TCCGTCCGGAAATATTTGTCATTA 58.327 37.500 5.23 0.00 42.05 1.90
116 117 4.519213 TCCGTCCGGAAATATTTGTCATT 58.481 39.130 5.23 0.00 42.05 2.57
117 118 4.127171 CTCCGTCCGGAAATATTTGTCAT 58.873 43.478 5.23 0.00 44.66 3.06
118 119 3.527533 CTCCGTCCGGAAATATTTGTCA 58.472 45.455 5.23 0.00 44.66 3.58
119 120 2.870411 CCTCCGTCCGGAAATATTTGTC 59.130 50.000 5.23 0.00 44.66 3.18
120 121 2.502538 TCCTCCGTCCGGAAATATTTGT 59.497 45.455 5.23 0.00 44.66 2.83
121 122 3.188159 TCCTCCGTCCGGAAATATTTG 57.812 47.619 5.23 0.00 44.66 2.32
122 123 3.199289 ACTTCCTCCGTCCGGAAATATTT 59.801 43.478 5.23 0.00 44.66 1.40
123 124 2.770232 ACTTCCTCCGTCCGGAAATATT 59.230 45.455 5.23 0.00 44.66 1.28
124 125 2.395619 ACTTCCTCCGTCCGGAAATAT 58.604 47.619 5.23 0.00 44.66 1.28
125 126 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
126 127 1.479730 GTACTTCCTCCGTCCGGAAAT 59.520 52.381 5.23 0.00 44.66 2.17
127 128 0.890683 GTACTTCCTCCGTCCGGAAA 59.109 55.000 5.23 1.47 44.66 3.13
128 129 0.251297 TGTACTTCCTCCGTCCGGAA 60.251 55.000 5.23 0.00 44.66 4.30
129 130 0.251297 TTGTACTTCCTCCGTCCGGA 60.251 55.000 0.00 0.00 42.90 5.14
130 131 0.604578 TTTGTACTTCCTCCGTCCGG 59.395 55.000 0.00 0.00 0.00 5.14
131 132 2.443887 TTTTGTACTTCCTCCGTCCG 57.556 50.000 0.00 0.00 0.00 4.79
132 133 5.485620 AGTAATTTTGTACTTCCTCCGTCC 58.514 41.667 0.00 0.00 29.76 4.79
133 134 6.647895 TCAAGTAATTTTGTACTTCCTCCGTC 59.352 38.462 0.00 0.00 41.38 4.79
134 135 6.527423 TCAAGTAATTTTGTACTTCCTCCGT 58.473 36.000 0.00 0.00 41.38 4.69
135 136 6.402226 GCTCAAGTAATTTTGTACTTCCTCCG 60.402 42.308 0.00 0.00 41.38 4.63
136 137 6.127980 GGCTCAAGTAATTTTGTACTTCCTCC 60.128 42.308 0.00 0.00 41.38 4.30
137 138 6.430000 TGGCTCAAGTAATTTTGTACTTCCTC 59.570 38.462 0.00 0.00 41.38 3.71
138 139 6.303839 TGGCTCAAGTAATTTTGTACTTCCT 58.696 36.000 0.00 0.00 41.38 3.36
139 140 6.206829 ACTGGCTCAAGTAATTTTGTACTTCC 59.793 38.462 0.00 0.00 41.38 3.46
140 141 7.203255 ACTGGCTCAAGTAATTTTGTACTTC 57.797 36.000 0.00 0.00 41.38 3.01
141 142 7.582667 AACTGGCTCAAGTAATTTTGTACTT 57.417 32.000 0.00 0.00 43.56 2.24
142 143 7.425606 CAAACTGGCTCAAGTAATTTTGTACT 58.574 34.615 0.00 0.00 35.80 2.73
143 144 6.143919 GCAAACTGGCTCAAGTAATTTTGTAC 59.856 38.462 0.00 0.00 0.00 2.90
144 145 6.040391 AGCAAACTGGCTCAAGTAATTTTGTA 59.960 34.615 0.00 0.00 41.05 2.41
145 146 5.049828 GCAAACTGGCTCAAGTAATTTTGT 58.950 37.500 0.00 0.00 0.00 2.83
146 147 5.291971 AGCAAACTGGCTCAAGTAATTTTG 58.708 37.500 0.00 0.00 41.05 2.44
147 148 5.535753 AGCAAACTGGCTCAAGTAATTTT 57.464 34.783 0.00 0.00 41.05 1.82
159 160 0.317020 GAACACACGAGCAAACTGGC 60.317 55.000 0.00 0.00 0.00 4.85
160 161 1.003545 CAGAACACACGAGCAAACTGG 60.004 52.381 0.00 0.00 0.00 4.00
161 162 1.003545 CCAGAACACACGAGCAAACTG 60.004 52.381 0.00 0.00 0.00 3.16
162 163 1.134521 TCCAGAACACACGAGCAAACT 60.135 47.619 0.00 0.00 0.00 2.66
163 164 1.295792 TCCAGAACACACGAGCAAAC 58.704 50.000 0.00 0.00 0.00 2.93
164 165 2.254546 ATCCAGAACACACGAGCAAA 57.745 45.000 0.00 0.00 0.00 3.68
165 166 1.872952 CAATCCAGAACACACGAGCAA 59.127 47.619 0.00 0.00 0.00 3.91
166 167 1.511850 CAATCCAGAACACACGAGCA 58.488 50.000 0.00 0.00 0.00 4.26
167 168 0.166814 GCAATCCAGAACACACGAGC 59.833 55.000 0.00 0.00 0.00 5.03
168 169 1.511850 TGCAATCCAGAACACACGAG 58.488 50.000 0.00 0.00 0.00 4.18
169 170 2.183478 ATGCAATCCAGAACACACGA 57.817 45.000 0.00 0.00 0.00 4.35
170 171 2.981805 CAAATGCAATCCAGAACACACG 59.018 45.455 0.00 0.00 0.00 4.49
171 172 2.733026 GCAAATGCAATCCAGAACACAC 59.267 45.455 0.00 0.00 41.59 3.82
172 173 2.288948 GGCAAATGCAATCCAGAACACA 60.289 45.455 7.80 0.00 44.36 3.72
173 174 2.288948 TGGCAAATGCAATCCAGAACAC 60.289 45.455 7.80 0.00 44.36 3.32
174 175 1.969208 TGGCAAATGCAATCCAGAACA 59.031 42.857 7.80 0.00 44.36 3.18
175 176 2.028748 AGTGGCAAATGCAATCCAGAAC 60.029 45.455 7.80 0.00 44.36 3.01
176 177 2.250031 AGTGGCAAATGCAATCCAGAA 58.750 42.857 7.80 0.00 44.36 3.02
177 178 1.927487 AGTGGCAAATGCAATCCAGA 58.073 45.000 7.80 0.00 44.36 3.86
178 179 2.754946 AAGTGGCAAATGCAATCCAG 57.245 45.000 7.80 0.00 44.36 3.86
179 180 3.139850 CAAAAGTGGCAAATGCAATCCA 58.860 40.909 7.80 0.00 44.36 3.41
180 181 2.485038 CCAAAAGTGGCAAATGCAATCC 59.515 45.455 7.80 0.00 44.36 3.01
181 182 3.817148 CCAAAAGTGGCAAATGCAATC 57.183 42.857 7.80 0.00 44.36 2.67
191 192 6.360924 CCATAAGGACCAACCAAAAGTGGC 62.361 50.000 0.00 0.00 43.13 5.01
192 193 3.258123 CCATAAGGACCAACCAAAAGTGG 59.742 47.826 0.00 0.00 44.33 4.00
193 194 4.148838 TCCATAAGGACCAACCAAAAGTG 58.851 43.478 0.00 0.00 39.61 3.16
194 195 4.463050 TCCATAAGGACCAACCAAAAGT 57.537 40.909 0.00 0.00 39.61 2.66
206 207 2.983192 TGTTTCTGGTGGTCCATAAGGA 59.017 45.455 0.00 0.00 43.43 3.36
207 208 3.433306 TGTTTCTGGTGGTCCATAAGG 57.567 47.619 0.00 0.00 43.43 2.69
208 209 5.982890 ATTTGTTTCTGGTGGTCCATAAG 57.017 39.130 0.00 0.00 43.43 1.73
209 210 6.739331 AAATTTGTTTCTGGTGGTCCATAA 57.261 33.333 0.00 0.00 43.43 1.90
210 211 6.072397 CGTAAATTTGTTTCTGGTGGTCCATA 60.072 38.462 0.00 0.00 43.43 2.74
211 212 5.278758 CGTAAATTTGTTTCTGGTGGTCCAT 60.279 40.000 0.00 0.00 43.43 3.41
212 213 4.036971 CGTAAATTTGTTTCTGGTGGTCCA 59.963 41.667 0.00 0.00 42.05 4.02
213 214 4.276431 TCGTAAATTTGTTTCTGGTGGTCC 59.724 41.667 0.00 0.00 0.00 4.46
214 215 5.427036 TCGTAAATTTGTTTCTGGTGGTC 57.573 39.130 0.00 0.00 0.00 4.02
215 216 6.039941 TCAATCGTAAATTTGTTTCTGGTGGT 59.960 34.615 0.00 0.00 0.00 4.16
216 217 6.442952 TCAATCGTAAATTTGTTTCTGGTGG 58.557 36.000 0.00 0.00 0.00 4.61
217 218 7.433719 TGTTCAATCGTAAATTTGTTTCTGGTG 59.566 33.333 0.00 0.00 0.00 4.17
218 219 7.434013 GTGTTCAATCGTAAATTTGTTTCTGGT 59.566 33.333 0.00 0.00 0.00 4.00
219 220 7.647715 AGTGTTCAATCGTAAATTTGTTTCTGG 59.352 33.333 0.00 0.00 0.00 3.86
220 221 8.560576 AGTGTTCAATCGTAAATTTGTTTCTG 57.439 30.769 0.00 0.00 0.00 3.02
225 226 9.620660 GGAATAAGTGTTCAATCGTAAATTTGT 57.379 29.630 0.00 0.00 0.00 2.83
226 227 9.072294 GGGAATAAGTGTTCAATCGTAAATTTG 57.928 33.333 0.00 0.00 0.00 2.32
227 228 7.966204 CGGGAATAAGTGTTCAATCGTAAATTT 59.034 33.333 0.00 0.00 0.00 1.82
228 229 7.334921 TCGGGAATAAGTGTTCAATCGTAAATT 59.665 33.333 0.00 0.00 0.00 1.82
229 230 6.819649 TCGGGAATAAGTGTTCAATCGTAAAT 59.180 34.615 0.00 0.00 0.00 1.40
230 231 6.164876 TCGGGAATAAGTGTTCAATCGTAAA 58.835 36.000 0.00 0.00 0.00 2.01
231 232 5.722263 TCGGGAATAAGTGTTCAATCGTAA 58.278 37.500 0.00 0.00 0.00 3.18
232 233 5.327616 TCGGGAATAAGTGTTCAATCGTA 57.672 39.130 0.00 0.00 0.00 3.43
233 234 4.196626 TCGGGAATAAGTGTTCAATCGT 57.803 40.909 0.00 0.00 0.00 3.73
234 235 4.630069 AGTTCGGGAATAAGTGTTCAATCG 59.370 41.667 0.00 0.00 0.00 3.34
235 236 5.411669 ACAGTTCGGGAATAAGTGTTCAATC 59.588 40.000 0.00 0.00 37.22 2.67
236 237 5.313712 ACAGTTCGGGAATAAGTGTTCAAT 58.686 37.500 0.00 0.00 37.22 2.57
237 238 4.710324 ACAGTTCGGGAATAAGTGTTCAA 58.290 39.130 0.00 0.00 37.22 2.69
238 239 4.312443 GACAGTTCGGGAATAAGTGTTCA 58.688 43.478 0.00 0.00 39.89 3.18
239 240 3.683340 GGACAGTTCGGGAATAAGTGTTC 59.317 47.826 0.00 0.00 39.89 3.18
240 241 3.326880 AGGACAGTTCGGGAATAAGTGTT 59.673 43.478 0.00 0.00 39.89 3.32
241 242 2.904434 AGGACAGTTCGGGAATAAGTGT 59.096 45.455 0.00 0.00 41.91 3.55
242 243 3.611766 AGGACAGTTCGGGAATAAGTG 57.388 47.619 0.00 0.00 34.18 3.16
243 244 3.838903 AGAAGGACAGTTCGGGAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
244 245 4.473477 AGAAGGACAGTTCGGGAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
245 246 6.555463 ATTAGAAGGACAGTTCGGGAATAA 57.445 37.500 0.00 0.00 0.00 1.40
246 247 6.070424 ACAATTAGAAGGACAGTTCGGGAATA 60.070 38.462 0.00 0.00 0.00 1.75
247 248 5.186198 CAATTAGAAGGACAGTTCGGGAAT 58.814 41.667 0.00 0.00 0.00 3.01
248 249 4.041198 ACAATTAGAAGGACAGTTCGGGAA 59.959 41.667 0.00 0.00 0.00 3.97
249 250 3.581332 ACAATTAGAAGGACAGTTCGGGA 59.419 43.478 0.00 0.00 0.00 5.14
250 251 3.939066 ACAATTAGAAGGACAGTTCGGG 58.061 45.455 0.00 0.00 0.00 5.14
251 252 5.238650 ACAAACAATTAGAAGGACAGTTCGG 59.761 40.000 0.00 0.00 0.00 4.30
252 253 6.300354 ACAAACAATTAGAAGGACAGTTCG 57.700 37.500 0.00 0.00 0.00 3.95
253 254 7.703328 TGAACAAACAATTAGAAGGACAGTTC 58.297 34.615 0.00 0.00 0.00 3.01
254 255 7.556275 TCTGAACAAACAATTAGAAGGACAGTT 59.444 33.333 0.00 0.00 0.00 3.16
255 256 7.054124 TCTGAACAAACAATTAGAAGGACAGT 58.946 34.615 0.00 0.00 0.00 3.55
256 257 7.496529 TCTGAACAAACAATTAGAAGGACAG 57.503 36.000 0.00 0.00 0.00 3.51
257 258 7.873719 TTCTGAACAAACAATTAGAAGGACA 57.126 32.000 0.00 0.00 0.00 4.02
258 259 7.809806 CCATTCTGAACAAACAATTAGAAGGAC 59.190 37.037 0.00 0.00 30.20 3.85
259 260 7.505585 ACCATTCTGAACAAACAATTAGAAGGA 59.494 33.333 0.00 0.00 30.20 3.36
260 261 7.661040 ACCATTCTGAACAAACAATTAGAAGG 58.339 34.615 0.00 0.00 0.00 3.46
261 262 9.831737 CTACCATTCTGAACAAACAATTAGAAG 57.168 33.333 0.00 0.00 0.00 2.85
262 263 9.349713 ACTACCATTCTGAACAAACAATTAGAA 57.650 29.630 0.00 0.00 0.00 2.10
263 264 8.918202 ACTACCATTCTGAACAAACAATTAGA 57.082 30.769 0.00 0.00 0.00 2.10
267 268 9.912634 CAATAACTACCATTCTGAACAAACAAT 57.087 29.630 0.00 0.00 0.00 2.71
268 269 8.908903 ACAATAACTACCATTCTGAACAAACAA 58.091 29.630 0.00 0.00 0.00 2.83
269 270 8.458573 ACAATAACTACCATTCTGAACAAACA 57.541 30.769 0.00 0.00 0.00 2.83
270 271 7.744715 CGACAATAACTACCATTCTGAACAAAC 59.255 37.037 0.00 0.00 0.00 2.93
271 272 7.658167 TCGACAATAACTACCATTCTGAACAAA 59.342 33.333 0.00 0.00 0.00 2.83
272 273 7.156000 TCGACAATAACTACCATTCTGAACAA 58.844 34.615 0.00 0.00 0.00 2.83
273 274 6.693466 TCGACAATAACTACCATTCTGAACA 58.307 36.000 0.00 0.00 0.00 3.18
274 275 6.237861 GCTCGACAATAACTACCATTCTGAAC 60.238 42.308 0.00 0.00 0.00 3.18
275 276 5.810587 GCTCGACAATAACTACCATTCTGAA 59.189 40.000 0.00 0.00 0.00 3.02
276 277 5.105513 TGCTCGACAATAACTACCATTCTGA 60.106 40.000 0.00 0.00 0.00 3.27
277 278 5.109210 TGCTCGACAATAACTACCATTCTG 58.891 41.667 0.00 0.00 0.00 3.02
278 279 5.105310 ACTGCTCGACAATAACTACCATTCT 60.105 40.000 0.00 0.00 0.00 2.40
279 280 5.005779 CACTGCTCGACAATAACTACCATTC 59.994 44.000 0.00 0.00 0.00 2.67
280 281 4.870426 CACTGCTCGACAATAACTACCATT 59.130 41.667 0.00 0.00 0.00 3.16
281 282 4.433615 CACTGCTCGACAATAACTACCAT 58.566 43.478 0.00 0.00 0.00 3.55
282 283 3.368013 CCACTGCTCGACAATAACTACCA 60.368 47.826 0.00 0.00 0.00 3.25
283 284 3.119245 TCCACTGCTCGACAATAACTACC 60.119 47.826 0.00 0.00 0.00 3.18
284 285 4.106029 TCCACTGCTCGACAATAACTAC 57.894 45.455 0.00 0.00 0.00 2.73
285 286 3.428999 GCTCCACTGCTCGACAATAACTA 60.429 47.826 0.00 0.00 0.00 2.24
286 287 2.675317 GCTCCACTGCTCGACAATAACT 60.675 50.000 0.00 0.00 0.00 2.24
287 288 1.661112 GCTCCACTGCTCGACAATAAC 59.339 52.381 0.00 0.00 0.00 1.89
288 289 1.405526 GGCTCCACTGCTCGACAATAA 60.406 52.381 0.00 0.00 0.00 1.40
289 290 0.175760 GGCTCCACTGCTCGACAATA 59.824 55.000 0.00 0.00 0.00 1.90
290 291 1.078848 GGCTCCACTGCTCGACAAT 60.079 57.895 0.00 0.00 0.00 2.71
291 292 1.758440 AAGGCTCCACTGCTCGACAA 61.758 55.000 0.00 0.00 0.00 3.18
292 293 2.159819 GAAGGCTCCACTGCTCGACA 62.160 60.000 0.00 0.00 0.00 4.35
293 294 1.446966 GAAGGCTCCACTGCTCGAC 60.447 63.158 0.00 0.00 0.00 4.20
294 295 1.599606 GAGAAGGCTCCACTGCTCGA 61.600 60.000 0.00 0.00 33.63 4.04
295 296 1.153667 GAGAAGGCTCCACTGCTCG 60.154 63.158 0.00 0.00 33.63 5.03
296 297 1.153667 CGAGAAGGCTCCACTGCTC 60.154 63.158 0.00 0.00 39.39 4.26
297 298 1.476007 AACGAGAAGGCTCCACTGCT 61.476 55.000 0.00 0.00 37.91 4.24
298 299 0.246635 TAACGAGAAGGCTCCACTGC 59.753 55.000 0.00 0.00 37.91 4.40
299 300 2.743636 TTAACGAGAAGGCTCCACTG 57.256 50.000 0.00 0.00 37.91 3.66
300 301 2.633481 ACTTTAACGAGAAGGCTCCACT 59.367 45.455 0.00 0.00 37.91 4.00
301 302 3.041508 ACTTTAACGAGAAGGCTCCAC 57.958 47.619 0.00 0.00 37.91 4.02
302 303 3.181458 ACAACTTTAACGAGAAGGCTCCA 60.181 43.478 0.00 0.00 37.91 3.86
303 304 3.186613 CACAACTTTAACGAGAAGGCTCC 59.813 47.826 0.00 0.00 37.91 4.70
304 305 3.186613 CCACAACTTTAACGAGAAGGCTC 59.813 47.826 0.00 0.00 37.81 4.70
305 306 3.139077 CCACAACTTTAACGAGAAGGCT 58.861 45.455 0.00 0.00 0.00 4.58
306 307 3.135994 TCCACAACTTTAACGAGAAGGC 58.864 45.455 0.00 0.00 0.00 4.35
307 308 4.755123 ACATCCACAACTTTAACGAGAAGG 59.245 41.667 0.00 0.00 0.00 3.46
308 309 5.924475 ACATCCACAACTTTAACGAGAAG 57.076 39.130 0.00 0.00 0.00 2.85
309 310 5.008217 CCAACATCCACAACTTTAACGAGAA 59.992 40.000 0.00 0.00 0.00 2.87
310 311 4.513692 CCAACATCCACAACTTTAACGAGA 59.486 41.667 0.00 0.00 0.00 4.04
311 312 4.274950 ACCAACATCCACAACTTTAACGAG 59.725 41.667 0.00 0.00 0.00 4.18
312 313 4.035792 CACCAACATCCACAACTTTAACGA 59.964 41.667 0.00 0.00 0.00 3.85
313 314 4.201970 ACACCAACATCCACAACTTTAACG 60.202 41.667 0.00 0.00 0.00 3.18
314 315 5.257082 ACACCAACATCCACAACTTTAAC 57.743 39.130 0.00 0.00 0.00 2.01
315 316 5.186021 ACAACACCAACATCCACAACTTTAA 59.814 36.000 0.00 0.00 0.00 1.52
316 317 4.707448 ACAACACCAACATCCACAACTTTA 59.293 37.500 0.00 0.00 0.00 1.85
317 318 3.513515 ACAACACCAACATCCACAACTTT 59.486 39.130 0.00 0.00 0.00 2.66
318 319 3.096092 ACAACACCAACATCCACAACTT 58.904 40.909 0.00 0.00 0.00 2.66
319 320 2.687935 GACAACACCAACATCCACAACT 59.312 45.455 0.00 0.00 0.00 3.16
320 321 2.425312 TGACAACACCAACATCCACAAC 59.575 45.455 0.00 0.00 0.00 3.32
321 322 2.425312 GTGACAACACCAACATCCACAA 59.575 45.455 0.00 0.00 40.74 3.33
322 323 2.020720 GTGACAACACCAACATCCACA 58.979 47.619 0.00 0.00 40.74 4.17
323 324 2.774439 GTGACAACACCAACATCCAC 57.226 50.000 0.00 0.00 40.74 4.02
344 345 1.144093 ACGGATTTTGGAGACCACCAA 59.856 47.619 0.00 0.00 46.44 3.67
345 346 0.768622 ACGGATTTTGGAGACCACCA 59.231 50.000 0.00 0.00 38.24 4.17
346 347 1.165270 CACGGATTTTGGAGACCACC 58.835 55.000 0.00 0.00 30.78 4.61
347 348 0.521735 GCACGGATTTTGGAGACCAC 59.478 55.000 0.00 0.00 30.78 4.16
348 349 0.608035 GGCACGGATTTTGGAGACCA 60.608 55.000 0.00 0.00 0.00 4.02
349 350 0.322546 AGGCACGGATTTTGGAGACC 60.323 55.000 0.00 0.00 0.00 3.85
350 351 1.087501 GAGGCACGGATTTTGGAGAC 58.912 55.000 0.00 0.00 0.00 3.36
351 352 0.035439 GGAGGCACGGATTTTGGAGA 60.035 55.000 0.00 0.00 0.00 3.71
352 353 1.369091 CGGAGGCACGGATTTTGGAG 61.369 60.000 0.00 0.00 0.00 3.86
353 354 1.376683 CGGAGGCACGGATTTTGGA 60.377 57.895 0.00 0.00 0.00 3.53
354 355 3.051392 GCGGAGGCACGGATTTTGG 62.051 63.158 3.88 0.00 39.62 3.28
355 356 0.742990 TAGCGGAGGCACGGATTTTG 60.743 55.000 3.88 0.00 43.41 2.44
356 357 0.180406 ATAGCGGAGGCACGGATTTT 59.820 50.000 3.88 0.00 43.41 1.82
357 358 0.249911 GATAGCGGAGGCACGGATTT 60.250 55.000 3.88 0.00 43.41 2.17
358 359 1.367840 GATAGCGGAGGCACGGATT 59.632 57.895 3.88 0.00 43.41 3.01
359 360 1.832608 TGATAGCGGAGGCACGGAT 60.833 57.895 3.88 0.00 43.41 4.18
360 361 2.441348 TGATAGCGGAGGCACGGA 60.441 61.111 3.88 0.00 43.41 4.69
361 362 2.279517 GTGATAGCGGAGGCACGG 60.280 66.667 3.88 0.00 43.41 4.94
362 363 2.279517 GGTGATAGCGGAGGCACG 60.280 66.667 0.00 0.00 43.41 5.34
363 364 2.109181 GGGTGATAGCGGAGGCAC 59.891 66.667 0.00 0.00 43.41 5.01
364 365 2.364973 TGGGTGATAGCGGAGGCA 60.365 61.111 0.00 0.00 43.41 4.75
365 366 1.686325 TTCTGGGTGATAGCGGAGGC 61.686 60.000 0.00 0.00 40.37 4.70
366 367 0.105039 GTTCTGGGTGATAGCGGAGG 59.895 60.000 0.00 0.00 0.00 4.30
367 368 0.105039 GGTTCTGGGTGATAGCGGAG 59.895 60.000 0.00 0.00 0.00 4.63
368 369 1.335132 GGGTTCTGGGTGATAGCGGA 61.335 60.000 0.00 0.00 0.00 5.54
369 370 1.146263 GGGTTCTGGGTGATAGCGG 59.854 63.158 0.00 0.00 0.00 5.52
370 371 0.179073 CAGGGTTCTGGGTGATAGCG 60.179 60.000 0.00 0.00 37.36 4.26
371 372 1.204146 TCAGGGTTCTGGGTGATAGC 58.796 55.000 0.00 0.00 41.23 2.97
372 373 3.041211 TCATCAGGGTTCTGGGTGATAG 58.959 50.000 0.00 0.00 41.23 2.08
373 374 3.041211 CTCATCAGGGTTCTGGGTGATA 58.959 50.000 0.00 0.00 41.23 2.15
374 375 1.842562 CTCATCAGGGTTCTGGGTGAT 59.157 52.381 0.00 0.00 41.23 3.06
375 376 1.203300 TCTCATCAGGGTTCTGGGTGA 60.203 52.381 0.00 0.00 41.23 4.02
376 377 1.279496 TCTCATCAGGGTTCTGGGTG 58.721 55.000 0.00 0.00 41.23 4.61
377 378 2.044793 TTCTCATCAGGGTTCTGGGT 57.955 50.000 0.00 0.00 41.23 4.51
378 379 3.713764 ACTATTCTCATCAGGGTTCTGGG 59.286 47.826 0.00 0.00 41.23 4.45
379 380 4.406972 TGACTATTCTCATCAGGGTTCTGG 59.593 45.833 0.00 0.00 41.23 3.86
380 381 5.604758 TGACTATTCTCATCAGGGTTCTG 57.395 43.478 0.00 0.00 42.21 3.02
381 382 6.821616 AATGACTATTCTCATCAGGGTTCT 57.178 37.500 0.00 0.00 30.12 3.01
382 383 7.659390 CCTTAATGACTATTCTCATCAGGGTTC 59.341 40.741 0.00 0.00 32.18 3.62
383 384 7.512992 CCTTAATGACTATTCTCATCAGGGTT 58.487 38.462 0.00 0.00 32.18 4.11
384 385 6.465035 GCCTTAATGACTATTCTCATCAGGGT 60.465 42.308 8.45 0.00 34.37 4.34
385 386 5.936956 GCCTTAATGACTATTCTCATCAGGG 59.063 44.000 8.45 0.00 34.37 4.45
386 387 5.936956 GGCCTTAATGACTATTCTCATCAGG 59.063 44.000 0.00 0.00 35.68 3.86
387 388 5.636965 CGGCCTTAATGACTATTCTCATCAG 59.363 44.000 0.00 0.00 30.12 2.90
388 389 5.070446 ACGGCCTTAATGACTATTCTCATCA 59.930 40.000 0.00 0.00 30.12 3.07
389 390 5.406780 CACGGCCTTAATGACTATTCTCATC 59.593 44.000 0.00 0.00 30.12 2.92
390 391 5.163301 ACACGGCCTTAATGACTATTCTCAT 60.163 40.000 0.00 0.00 31.84 2.90
391 392 4.161565 ACACGGCCTTAATGACTATTCTCA 59.838 41.667 0.00 0.00 0.00 3.27
392 393 4.694339 ACACGGCCTTAATGACTATTCTC 58.306 43.478 0.00 0.00 0.00 2.87
393 394 4.755266 ACACGGCCTTAATGACTATTCT 57.245 40.909 0.00 0.00 0.00 2.40
394 395 5.448632 CCAAACACGGCCTTAATGACTATTC 60.449 44.000 0.00 0.00 0.00 1.75
395 396 4.398044 CCAAACACGGCCTTAATGACTATT 59.602 41.667 0.00 0.00 0.00 1.73
396 397 3.945285 CCAAACACGGCCTTAATGACTAT 59.055 43.478 0.00 0.00 0.00 2.12
397 398 3.244630 ACCAAACACGGCCTTAATGACTA 60.245 43.478 0.00 0.00 0.00 2.59
398 399 2.159382 CCAAACACGGCCTTAATGACT 58.841 47.619 0.00 0.00 0.00 3.41
399 400 1.883926 ACCAAACACGGCCTTAATGAC 59.116 47.619 0.00 0.00 0.00 3.06
400 401 2.279935 ACCAAACACGGCCTTAATGA 57.720 45.000 0.00 0.00 0.00 2.57
748 758 4.814147 CCTATAGCGCAGATCTGAAATCA 58.186 43.478 27.04 6.90 0.00 2.57
918 944 3.805807 GCCTAACCACTGAGCTACACAAA 60.806 47.826 0.00 0.00 0.00 2.83
921 947 1.405661 GGCCTAACCACTGAGCTACAC 60.406 57.143 0.00 0.00 38.86 2.90
922 948 0.902531 GGCCTAACCACTGAGCTACA 59.097 55.000 0.00 0.00 38.86 2.74
923 949 0.179108 CGGCCTAACCACTGAGCTAC 60.179 60.000 0.00 0.00 39.03 3.58
969 995 1.536766 ACATCGACGGTTCGTTCAGTA 59.463 47.619 0.00 0.00 46.01 2.74
990 1016 1.133598 CGTGCGTCCATAACCTAGTCA 59.866 52.381 0.00 0.00 0.00 3.41
1231 1257 0.318441 CTGAAGGTCTCGACAAGCCA 59.682 55.000 0.00 0.00 0.00 4.75
1260 1286 5.373222 TGGTGTTTGCTATCTTGTAACAGT 58.627 37.500 0.00 0.00 30.16 3.55
1343 1372 1.464608 CCTGAACGTGTTGCGAATGAT 59.535 47.619 0.00 0.00 44.77 2.45
1350 1379 1.795768 TGATCTCCTGAACGTGTTGC 58.204 50.000 0.00 0.00 0.00 4.17
1409 1438 1.203313 TCCTCTAAGCTCCCCAACAGT 60.203 52.381 0.00 0.00 0.00 3.55
1484 1513 5.071788 TCACCTTGAAGTATGGATACCATCC 59.928 44.000 6.55 0.00 40.74 3.51
1701 1732 6.757897 ACTTCAGATCAAAGTCAACAACAA 57.242 33.333 7.49 0.00 31.36 2.83
1733 1764 1.975407 CCTTCCAGCCAGCCAACAG 60.975 63.158 0.00 0.00 0.00 3.16
1748 1779 1.452651 CATCATGCGCTGACCCCTT 60.453 57.895 9.73 0.00 36.48 3.95
1831 1862 1.202734 GCATAGCCAGCATCTCCAAGA 60.203 52.381 0.00 0.00 0.00 3.02
1887 1918 5.014858 AGAACTCGTTGAGATGGTACCTTA 58.985 41.667 14.36 0.00 33.32 2.69
1945 1976 4.287067 AGGCTGGAGTGTCTGAGATTAAAA 59.713 41.667 0.00 0.00 0.00 1.52
1986 2017 1.352017 TCTTCAGAGCTCCAAATGCCA 59.648 47.619 10.93 0.00 0.00 4.92
2056 2087 4.078639 ACAAGCAAGAACTAGCTGAACT 57.921 40.909 0.00 0.00 41.70 3.01
2060 2091 2.926165 GCAACAAGCAAGAACTAGCTG 58.074 47.619 0.00 0.00 44.79 4.24
2107 2138 0.593128 GCACGTGTTCATCAAAGCCT 59.407 50.000 18.38 0.00 0.00 4.58
2129 2160 0.827368 GGCTCGACATCTTCCTCCTT 59.173 55.000 0.00 0.00 0.00 3.36
2153 2184 0.037590 TGGCCGGAGCTAACAACATT 59.962 50.000 5.05 0.00 39.73 2.71
2238 2270 3.397482 CTGCACTGACTTCTGTTAAGCT 58.603 45.455 0.00 0.00 0.00 3.74
2249 2281 4.090761 TCTTCAAAATCCTGCACTGACT 57.909 40.909 0.00 0.00 0.00 3.41
2265 2297 7.880160 TTTTGTTCTTCTTCCATCTTCTTCA 57.120 32.000 0.00 0.00 0.00 3.02
2288 2325 1.002430 TGCTACTGCTGCTGCTACTTT 59.998 47.619 17.00 0.00 40.48 2.66
2330 2372 4.352893 CTCTTCCTCTTCCTCTCCTCTTT 58.647 47.826 0.00 0.00 0.00 2.52
2352 2400 2.231215 AGTTCATCGATGCTACCAGC 57.769 50.000 20.81 5.20 42.82 4.85
2362 2422 7.008332 TGACTAAATAGGGGATAGTTCATCGA 58.992 38.462 0.00 0.00 34.12 3.59
2526 2586 3.557228 AACATGGTGTTTGGTTGCAAT 57.443 38.095 0.59 0.00 37.26 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.