AutoCloner

Multiple sequence alignment - TraesCS1D01G339800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G339800	chr1D	100.000	2582	0	0	1	2582	429701463	429704044	0.000000e+00	4769.0
1	TraesCS1D01G339800	chr1D	84.356	505	61	10	1096	1582	430105023	430105527	1.800000e-131	479.0
2	TraesCS1D01G339800	chr1A	91.535	2339	116	32	262	2582	527179040	527181314	0.000000e+00	3147.0
3	TraesCS1D01G339800	chr1A	80.503	477	75	10	1124	1582	527745318	527745794	1.470000e-92	350.0
4	TraesCS1D01G339800	chr1A	93.694	111	6	1	134	244	527178947	527179056	5.720000e-37	165.0
5	TraesCS1D01G339800	chr1B	91.679	1358	49	28	262	1589	580637108	580638431	0.000000e+00	1823.0
6	TraesCS1D01G339800	chr1B	84.064	502	62	11	1099	1582	581099150	581099651	3.890000e-128	468.0
7	TraesCS1D01G339800	chr1B	91.532	248	15	3	1	248	580636886	580637127	1.140000e-88	337.0
8	TraesCS1D01G339800	chr1B	85.393	89	8	5	1680	1767	180297073	180297157	1.270000e-13	87.9
9	TraesCS1D01G339800	chr1B	80.583	103	20	0	27	129	578098915	578098813	2.130000e-11	80.5
10	TraesCS1D01G339800	chr5D	90.293	546	48	2	2041	2582	454266213	454266757	0.000000e+00	710.0
11	TraesCS1D01G339800	chr5D	85.531	546	59	9	2041	2582	454290390	454290919	1.040000e-153	553.0
12	TraesCS1D01G339800	chr5D	87.773	458	52	1	2041	2494	454214181	454214638	1.360000e-147	532.0
13	TraesCS1D01G339800	chr5B	85.049	515	70	2	2041	2551	694316866	694317377	3.810000e-143	518.0
14	TraesCS1D01G339800	chr5B	87.692	65	6	2	67	130	216648463	216648526	9.910000e-10	75.0
15	TraesCS1D01G339800	chr6A	84.047	514	74	5	2041	2550	425247939	425247430	2.990000e-134	488.0
16	TraesCS1D01G339800	chr4A	82.873	543	85	3	2041	2579	34755128	34754590	5.000000e-132	481.0
17	TraesCS1D01G339800	chr4A	82.873	543	86	2	2041	2579	34765421	34764882	5.000000e-132	481.0
18	TraesCS1D01G339800	chr4A	82.320	543	88	3	2041	2579	34758558	34758020	5.030000e-127	464.0
19	TraesCS1D01G339800	chr4A	84.848	99	10	5	1677	1774	35625878	35625784	7.610000e-16	95.3
20	TraesCS1D01G339800	chr4A	83.333	96	13	3	1673	1768	608188030	608187938	4.580000e-13	86.1
21	TraesCS1D01G339800	chr7B	90.000	120	12	0	10	129	629411760	629411641	3.440000e-34	156.0
22	TraesCS1D01G339800	chr7B	88.636	88	10	0	1241	1328	685883769	685883856	9.770000e-20	108.0
23	TraesCS1D01G339800	chr7B	85.714	91	8	5	1678	1767	366056289	366056203	9.840000e-15	91.6
24	TraesCS1D01G339800	chr7B	84.783	92	9	5	1678	1768	734366929	734366842	1.270000e-13	87.9
25	TraesCS1D01G339800	chr7B	93.220	59	2	2	34	92	109033149	109033205	4.580000e-13	86.1
26	TraesCS1D01G339800	chr7D	86.139	101	8	5	34	129	146621618	146621717	1.260000e-18	104.0
27	TraesCS1D01G339800	chr7D	83.333	84	9	4	48	129	522919329	522919409	3.560000e-09	73.1
28	TraesCS1D01G339800	chr2D	90.000	80	6	2	1658	1737	36796199	36796276	4.550000e-18	102.0
29	TraesCS1D01G339800	chr3B	92.647	68	4	1	1689	1755	267239160	267239093	2.110000e-16	97.1
30	TraesCS1D01G339800	chr3A	85.393	89	8	5	1680	1767	658801189	658801105	1.270000e-13	87.9
31	TraesCS1D01G339800	chr7A	79.167	96	18	2	35	129	603099405	603099499	5.960000e-07	65.8
32	TraesCS1D01G339800	chr6D	96.875	32	1	0	1935	1966	298399916	298399947	1.000000e-03	54.7
33	TraesCS1D01G339800	chr6D	96.875	32	1	0	1935	1966	298403343	298403374	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G339800	chr1D	429701463	429704044	2581	False	4769.0	4769	100.0000	1	2582	1	chr1D.!!$F1	2581
1	TraesCS1D01G339800	chr1D	430105023	430105527	504	False	479.0	479	84.3560	1096	1582	1	chr1D.!!$F2	486
2	TraesCS1D01G339800	chr1A	527178947	527181314	2367	False	1656.0	3147	92.6145	134	2582	2	chr1A.!!$F2	2448
3	TraesCS1D01G339800	chr1B	580636886	580638431	1545	False	1080.0	1823	91.6055	1	1589	2	chr1B.!!$F3	1588
4	TraesCS1D01G339800	chr1B	581099150	581099651	501	False	468.0	468	84.0640	1099	1582	1	chr1B.!!$F2	483
5	TraesCS1D01G339800	chr5D	454266213	454266757	544	False	710.0	710	90.2930	2041	2582	1	chr5D.!!$F2	541
6	TraesCS1D01G339800	chr5D	454290390	454290919	529	False	553.0	553	85.5310	2041	2582	1	chr5D.!!$F3	541
7	TraesCS1D01G339800	chr5B	694316866	694317377	511	False	518.0	518	85.0490	2041	2551	1	chr5B.!!$F2	510
8	TraesCS1D01G339800	chr6A	425247430	425247939	509	True	488.0	488	84.0470	2041	2550	1	chr6A.!!$R1	509
9	TraesCS1D01G339800	chr4A	34764882	34765421	539	True	481.0	481	82.8730	2041	2579	1	chr4A.!!$R1	538
10	TraesCS1D01G339800	chr4A	34754590	34758558	3968	True	472.5	481	82.5965	2041	2579	2	chr4A.!!$R4	538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
947	968	0.17691	TCTTGATCATTGCCGCCGTA	59.823	50.0	0.0	0.0	0.0	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1981	2056	0.03601	AAGCGATGTGGACAGAAGGG	60.036	55.0	0.0	0.0	0.0	3.95	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
162	163	1.213094	ACGACGCCGAGTTGTTTCTG	61.213	55.000	0.00	0.00	44.87	3.02
244	245	3.023119	TGTGAAAGAAACATGTGGCACT	58.977	40.909	19.83	1.19	0.00	4.40
245	246	3.181488	TGTGAAAGAAACATGTGGCACTG	60.181	43.478	19.83	15.98	0.00	3.66
246	247	3.066621	GTGAAAGAAACATGTGGCACTGA	59.933	43.478	19.83	0.00	0.00	3.41
247	248	3.066621	TGAAAGAAACATGTGGCACTGAC	59.933	43.478	19.83	10.83	0.00	3.51
248	249	1.609208	AGAAACATGTGGCACTGACC	58.391	50.000	19.83	8.85	0.00	4.02
249	250	0.598065	GAAACATGTGGCACTGACCC	59.402	55.000	19.83	0.19	0.00	4.46
250	251	0.185901	AAACATGTGGCACTGACCCT	59.814	50.000	19.83	0.00	0.00	4.34
251	252	0.250901	AACATGTGGCACTGACCCTC	60.251	55.000	19.83	0.00	0.00	4.30
252	253	1.376086	CATGTGGCACTGACCCTCA	59.624	57.895	19.83	0.00	0.00	3.86
253	254	0.250858	CATGTGGCACTGACCCTCAA	60.251	55.000	19.83	0.00	30.57	3.02
254	255	0.478072	ATGTGGCACTGACCCTCAAA	59.522	50.000	19.83	0.00	30.57	2.69
255	256	0.257328	TGTGGCACTGACCCTCAAAA	59.743	50.000	19.83	0.00	0.00	2.44
256	257	1.341482	TGTGGCACTGACCCTCAAAAA	60.341	47.619	19.83	0.00	0.00	1.94
299	300	4.640201	ACAGACAGTGTTGTTGTAGCAAAT	59.360	37.500	0.00	0.00	34.94	2.32
462	468	2.561373	GCCGTGGAGAAAAAGGCG	59.439	61.111	0.00	0.00	38.28	5.52
509	522	1.677552	GGGACCGTGGAACAGTCAT	59.322	57.895	0.00	0.00	41.80	3.06
618	636	4.794241	CGCGCGGCCGAAAGAAAG	62.794	66.667	33.48	11.01	36.29	2.62
619	637	4.460873	GCGCGGCCGAAAGAAAGG	62.461	66.667	33.48	7.41	36.29	3.11
620	638	2.740826	CGCGGCCGAAAGAAAGGA	60.741	61.111	33.48	0.00	36.29	3.36
621	639	2.322081	CGCGGCCGAAAGAAAGGAA	61.322	57.895	33.48	0.00	36.29	3.36
713	731	4.653888	CCCCGCACGTTTTCCCCT	62.654	66.667	0.00	0.00	0.00	4.79
745	764	2.338257	CCTAGCTAGGCTGCTCGC	59.662	66.667	26.62	3.70	42.97	5.03
746	765	2.199652	CCTAGCTAGGCTGCTCGCT	61.200	63.158	26.62	13.37	42.97	4.93
747	766	0.891449	CCTAGCTAGGCTGCTCGCTA	60.891	60.000	26.62	13.99	42.97	4.26
748	767	0.521291	CTAGCTAGGCTGCTCGCTAG	59.479	60.000	21.27	21.27	43.89	3.42
749	768	0.891449	TAGCTAGGCTGCTCGCTAGG	60.891	60.000	13.45	0.00	42.97	3.02
750	769	2.338257	CTAGGCTGCTCGCTAGGC	59.662	66.667	0.00	0.00	40.69	3.93
870	891	3.721370	GACCCCGGGCATCAGCAAT	62.721	63.158	17.73	0.00	44.61	3.56
872	893	3.282157	CCCGGGCATCAGCAATCG	61.282	66.667	8.08	0.00	44.61	3.34
947	968	0.176910	TCTTGATCATTGCCGCCGTA	59.823	50.000	0.00	0.00	0.00	4.02
1097	1118	1.126488	GGCCTCCTGTCATCATCTCA	58.874	55.000	0.00	0.00	0.00	3.27
1589	1664	2.802816	GCGGCAGAATGTAGGATTGTAG	59.197	50.000	0.00	0.00	39.31	2.74
1590	1665	3.741388	GCGGCAGAATGTAGGATTGTAGT	60.741	47.826	0.00	0.00	39.31	2.73
1591	1666	4.500887	GCGGCAGAATGTAGGATTGTAGTA	60.501	45.833	0.00	0.00	39.31	1.82
1619	1694	4.465512	GCCTTGTGCACGCGATGG	62.466	66.667	15.93	10.28	40.77	3.51
1655	1730	4.957954	CCAATTCCAGGGAAGAATCATTCA	59.042	41.667	6.91	0.00	37.56	2.57
1687	1762	8.964533	AATCAGATGATGTATAGTACTCCCTT	57.035	34.615	0.00	0.00	34.49	3.95
1760	1835	6.634837	CGTAGTAGTGATCTAAATGCACAGAG	59.365	42.308	0.00	0.00	35.08	3.35
1764	1839	4.125703	GTGATCTAAATGCACAGAGGGAG	58.874	47.826	0.00	0.00	32.96	4.30
1770	1845	0.532573	ATGCACAGAGGGAGTACGTG	59.467	55.000	0.00	0.00	0.00	4.49
1787	1862	4.146745	ACGTGGTAGGTTTTCTTGTCTT	57.853	40.909	0.00	0.00	0.00	3.01
1835	1910	3.247006	AGGGCACTGTTGTATTACTCG	57.753	47.619	0.00	0.00	0.00	4.18
1837	1912	1.664151	GGCACTGTTGTATTACTCGCC	59.336	52.381	0.00	0.00	0.00	5.54
1848	1923	4.757657	TGTATTACTCGCCATCTCTCTCTC	59.242	45.833	0.00	0.00	0.00	3.20
1852	1927	2.703536	ACTCGCCATCTCTCTCTCTCTA	59.296	50.000	0.00	0.00	0.00	2.43
1962	2037	2.047655	TTCGTGCCGTGATCCACC	60.048	61.111	0.00	0.00	0.00	4.61
1970	2045	0.750850	CCGTGATCCACCGGAATACT	59.249	55.000	9.46	0.00	34.34	2.12
1981	2056	1.900486	CCGGAATACTGGATACCCTCC	59.100	57.143	0.00	0.00	44.87	4.30
1990	2065	1.344087	TGGATACCCTCCCCTTCTGTC	60.344	57.143	0.00	0.00	44.23	3.51
1992	2067	0.722676	ATACCCTCCCCTTCTGTCCA	59.277	55.000	0.00	0.00	0.00	4.02
1994	2069	1.538876	CCCTCCCCTTCTGTCCACA	60.539	63.158	0.00	0.00	0.00	4.17
2071	2146	3.795755	TCCCTCCCTCCTTGAAATCTA	57.204	47.619	0.00	0.00	0.00	1.98
2194	2269	2.165641	GCTTTAACAACATGGGGGTAGC	59.834	50.000	0.00	0.00	0.00	3.58
2343	2418	5.494724	CCTCCTTGAGAATGTTCTTGATCA	58.505	41.667	0.00	0.00	37.73	2.92
2350	2425	5.163281	AGAATGTTCTTGATCAGAGCAGT	57.837	39.130	13.81	12.03	45.12	4.40
2413	2494	0.462581	CACCTCCACCATCATGTCGG	60.463	60.000	0.00	0.00	0.00	4.79
2416	2497	2.896854	CCACCATCATGTCGGCGG	60.897	66.667	7.21	0.30	0.00	6.13
2433	2514	1.941668	GCGGCTGAAGTGTAGAAGCTT	60.942	52.381	0.00	0.00	35.93	3.74
2454	2538	0.033504	GAAGGTGACAAGACAGCGGA	59.966	55.000	0.00	0.00	42.15	5.54
2504	2603	4.319177	CTTGAAAGACCTTCCATCGAGTT	58.681	43.478	0.00	0.00	32.53	3.01
2523	2622	5.333875	CGAGTTAACTTCCTTAGCAACAACC	60.334	44.000	10.02	0.00	0.00	3.77

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	9.675464	TTTTGACCAAGTTTCTAGAGAAAACTA	57.325	29.630	8.39	0.00	44.58	2.24
140	141	0.599204	AAACAACTCGGCGTCGTCAT	60.599	50.000	10.18	0.00	37.69	3.06
162	163	5.577164	ACATACTGTGCTCGAGAAAATACAC	59.423	40.000	18.75	13.75	0.00	2.90
259	260	4.081752	TGTCTGTGCCACATGTTTCTTTTT	60.082	37.500	0.00	0.00	0.00	1.94
260	261	3.446873	TGTCTGTGCCACATGTTTCTTTT	59.553	39.130	0.00	0.00	0.00	2.27
261	262	3.023119	TGTCTGTGCCACATGTTTCTTT	58.977	40.909	0.00	0.00	0.00	2.52
262	263	2.620115	CTGTCTGTGCCACATGTTTCTT	59.380	45.455	0.00	0.00	0.00	2.52
263	264	2.224606	CTGTCTGTGCCACATGTTTCT	58.775	47.619	0.00	0.00	0.00	2.52
264	265	1.949525	ACTGTCTGTGCCACATGTTTC	59.050	47.619	0.00	0.00	0.00	2.78
265	266	1.677576	CACTGTCTGTGCCACATGTTT	59.322	47.619	0.00	0.00	40.06	2.83
266	267	1.311859	CACTGTCTGTGCCACATGTT	58.688	50.000	0.00	0.00	40.06	2.71
267	268	3.011085	CACTGTCTGTGCCACATGT	57.989	52.632	0.00	0.00	40.06	3.21
462	468	1.079057	GGAAGCTTCCTCCCGACAC	60.079	63.158	33.98	7.94	44.11	3.67
509	522	4.383861	CAGCTGCTCGGCACCTGA	62.384	66.667	12.98	0.00	42.76	3.86
616	634	2.248950	TCCTTGGGGTTTTCCTTTCCTT	59.751	45.455	0.00	0.00	40.46	3.36
617	635	1.863581	TCCTTGGGGTTTTCCTTTCCT	59.136	47.619	0.00	0.00	40.46	3.36
618	636	2.391926	TCCTTGGGGTTTTCCTTTCC	57.608	50.000	0.00	0.00	40.46	3.13
619	637	4.641396	CAATTCCTTGGGGTTTTCCTTTC	58.359	43.478	0.00	0.00	40.46	2.62
620	638	3.181445	GCAATTCCTTGGGGTTTTCCTTT	60.181	43.478	0.00	0.00	35.06	3.11
621	639	2.371841	GCAATTCCTTGGGGTTTTCCTT	59.628	45.455	0.00	0.00	35.06	3.36
749	768	0.729690	GGAATTTCTCGTGGCAGAGC	59.270	55.000	8.52	0.00	38.12	4.09
750	769	1.002366	CGGAATTTCTCGTGGCAGAG	58.998	55.000	7.40	7.40	39.52	3.35
751	770	1.019278	GCGGAATTTCTCGTGGCAGA	61.019	55.000	0.00	0.00	0.00	4.26
760	779	1.244019	GCTGTGGTGGCGGAATTTCT	61.244	55.000	0.00	0.00	0.00	2.52
859	878	1.004927	GTTACGTCGATTGCTGATGCC	60.005	52.381	0.00	0.00	38.71	4.40
860	879	1.658596	TGTTACGTCGATTGCTGATGC	59.341	47.619	0.00	0.00	40.20	3.91
861	880	2.029244	GGTGTTACGTCGATTGCTGATG	59.971	50.000	0.00	0.00	0.00	3.07
862	881	2.268298	GGTGTTACGTCGATTGCTGAT	58.732	47.619	0.00	0.00	0.00	2.90
863	882	1.000052	TGGTGTTACGTCGATTGCTGA	60.000	47.619	0.00	0.00	0.00	4.26
864	883	1.390123	CTGGTGTTACGTCGATTGCTG	59.610	52.381	0.00	0.00	0.00	4.41
870	891	0.386476	AAGTGCTGGTGTTACGTCGA	59.614	50.000	0.00	0.00	0.00	4.20
872	893	2.033151	GTGAAAGTGCTGGTGTTACGTC	60.033	50.000	0.00	0.00	0.00	4.34
920	941	1.742761	CAATGATCAAGAGCGTGGGT	58.257	50.000	0.00	0.00	0.00	4.51
947	968	3.450115	GTACGTCCCGAGCAGGCT	61.450	66.667	0.00	0.00	39.21	4.58
1589	1664	3.743886	GCACAAGGCAGAAAATACGTAC	58.256	45.455	0.00	0.00	43.97	3.67
1591	1666	2.989422	GCACAAGGCAGAAAATACGT	57.011	45.000	0.00	0.00	43.97	3.57
1615	1690	3.721087	TTGGGAAGAAGGAGAACCATC	57.279	47.619	0.00	0.00	38.94	3.51
1619	1694	4.013050	CTGGAATTGGGAAGAAGGAGAAC	58.987	47.826	0.00	0.00	0.00	3.01
1655	1730	9.030452	GTACTATACATCATCTGATTCTTCCCT	57.970	37.037	0.00	0.00	31.21	4.20
1736	1811	6.920758	CCTCTGTGCATTTAGATCACTACTAC	59.079	42.308	0.00	0.00	0.00	2.73
1752	1827	1.532604	CCACGTACTCCCTCTGTGCA	61.533	60.000	0.00	0.00	0.00	4.57
1760	1835	2.564504	AGAAAACCTACCACGTACTCCC	59.435	50.000	0.00	0.00	0.00	4.30
1764	1839	4.625028	AGACAAGAAAACCTACCACGTAC	58.375	43.478	0.00	0.00	0.00	3.67
1770	1845	4.448060	CGAGTCAAGACAAGAAAACCTACC	59.552	45.833	2.72	0.00	0.00	3.18
1787	1862	1.078918	CATGCTCCTTGCCGAGTCA	60.079	57.895	0.00	0.00	42.00	3.41
1812	1887	5.357257	CGAGTAATACAACAGTGCCCTAAT	58.643	41.667	0.00	0.00	0.00	1.73
1835	1910	5.815581	TCCTAATAGAGAGAGAGAGATGGC	58.184	45.833	0.00	0.00	0.00	4.40
1837	1912	9.300681	ACAATTCCTAATAGAGAGAGAGAGATG	57.699	37.037	0.00	0.00	0.00	2.90
1848	1923	9.469807	CTACACTTGCTACAATTCCTAATAGAG	57.530	37.037	0.00	0.00	0.00	2.43
1852	1927	6.316390	GTGCTACACTTGCTACAATTCCTAAT	59.684	38.462	0.00	0.00	0.00	1.73
1981	2056	0.036010	AAGCGATGTGGACAGAAGGG	60.036	55.000	0.00	0.00	0.00	3.95
1990	2065	3.000041	TGCAACTACTTAAGCGATGTGG	59.000	45.455	1.29	0.00	0.00	4.17
1992	2067	2.673368	GCTGCAACTACTTAAGCGATGT	59.327	45.455	1.29	0.00	0.00	3.06
2034	2109	2.173569	AGGGATGTTAGGAGCCATGAAC	59.826	50.000	0.00	0.00	0.00	3.18
2036	2111	2.050144	GAGGGATGTTAGGAGCCATGA	58.950	52.381	0.00	0.00	0.00	3.07
2112	2187	0.615331	AGGACCATCGAGTGCAATGT	59.385	50.000	0.00	0.00	0.00	2.71
2156	2231	2.203126	CCATCTCCGCCTTCAGCC	60.203	66.667	0.00	0.00	38.78	4.85
2159	2234	0.908910	TAAAGCCATCTCCGCCTTCA	59.091	50.000	0.00	0.00	0.00	3.02
2343	2418	2.534042	TAGTGCCCTCTAACTGCTCT	57.466	50.000	0.00	0.00	33.80	4.09
2350	2425	3.726790	TGGGTGTTATAGTGCCCTCTAA	58.273	45.455	0.00	0.00	41.59	2.10
2413	2494	0.390472	AGCTTCTACACTTCAGCCGC	60.390	55.000	0.00	0.00	32.25	6.53
2416	2497	3.045601	TCCAAGCTTCTACACTTCAGC	57.954	47.619	0.00	0.00	0.00	4.26
2433	2514	0.249868	CGCTGTCTTGTCACCTTCCA	60.250	55.000	0.00	0.00	0.00	3.53
2454	2538	0.608856	TGCGCCATGATCTTGGTTGT	60.609	50.000	24.31	0.00	39.11	3.32
2504	2603	4.217550	GCATGGTTGTTGCTAAGGAAGTTA	59.782	41.667	0.00	0.00	37.14	2.24
2523	2622	0.822532	GATCCTGGAGGGCTTGCATG	60.823	60.000	1.52	0.00	35.41	4.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.