Multiple sequence alignment - TraesCS1D01G339000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G339000 chr1D 100.000 6472 0 0 994 7465 428617893 428611422 0.000000e+00 11952.0
1 TraesCS1D01G339000 chr1D 98.536 4645 32 6 1002 5644 414710722 414715332 0.000000e+00 8168.0
2 TraesCS1D01G339000 chr1D 100.000 619 0 0 1 619 428618886 428618268 0.000000e+00 1144.0
3 TraesCS1D01G339000 chr1D 91.600 250 20 1 2071 2319 143369337 143369586 1.990000e-90 344.0
4 TraesCS1D01G339000 chr1D 100.000 138 0 0 466 603 414710297 414710434 9.610000e-64 255.0
5 TraesCS1D01G339000 chr1D 93.151 73 5 0 7392 7464 100458984 100459056 2.850000e-19 108.0
6 TraesCS1D01G339000 chr3D 98.227 4625 34 6 1014 5635 572506466 572501887 0.000000e+00 8043.0
7 TraesCS1D01G339000 chr3D 93.145 1342 29 23 4338 5636 578904034 578905355 0.000000e+00 1910.0
8 TraesCS1D01G339000 chr3D 90.400 250 22 2 2074 2322 612525046 612524798 2.010000e-85 327.0
9 TraesCS1D01G339000 chr3D 98.684 152 2 0 466 617 572506997 572506846 3.430000e-68 270.0
10 TraesCS1D01G339000 chr3D 96.104 154 6 0 466 619 578902737 578902890 1.240000e-62 252.0
11 TraesCS1D01G339000 chr3D 93.056 72 5 0 7393 7464 498049621 498049692 1.020000e-18 106.0
12 TraesCS1D01G339000 chr3D 88.462 78 9 0 7388 7465 611672981 611672904 2.220000e-15 95.3
13 TraesCS1D01G339000 chr7D 96.857 4072 92 7 1007 5064 69450135 69446086 0.000000e+00 6778.0
14 TraesCS1D01G339000 chr7D 98.057 1853 30 1 2503 4349 443143627 443141775 0.000000e+00 3217.0
15 TraesCS1D01G339000 chr7D 97.627 590 13 1 5043 5632 69446076 69445488 0.000000e+00 1011.0
16 TraesCS1D01G339000 chr5A 95.314 2497 89 6 2501 4986 137043715 137041236 0.000000e+00 3938.0
17 TraesCS1D01G339000 chr5A 93.384 1723 77 13 994 2703 137045405 137043707 0.000000e+00 2516.0
18 TraesCS1D01G339000 chr5A 95.690 580 21 3 5058 5636 609201102 609201678 0.000000e+00 929.0
19 TraesCS1D01G339000 chr5A 95.156 578 25 1 5064 5638 137041125 137040548 0.000000e+00 909.0
20 TraesCS1D01G339000 chr5A 94.771 153 8 0 467 619 137046780 137046628 9.680000e-59 239.0
21 TraesCS1D01G339000 chr5A 94.194 155 9 0 465 619 597253800 597253646 3.480000e-58 237.0
22 TraesCS1D01G339000 chr5A 92.547 161 12 0 2490 2650 2932403 2932243 1.620000e-56 231.0
23 TraesCS1D01G339000 chr5A 92.547 161 12 0 2490 2650 3030754 3030594 1.620000e-56 231.0
24 TraesCS1D01G339000 chr5A 91.667 168 12 2 453 619 609196634 609196800 1.620000e-56 231.0
25 TraesCS1D01G339000 chr3B 97.141 2099 47 5 2501 4587 779514441 779516538 0.000000e+00 3531.0
26 TraesCS1D01G339000 chr3B 96.951 2099 50 6 2501 4587 804137487 804135391 0.000000e+00 3509.0
27 TraesCS1D01G339000 chr3B 95.509 579 22 3 5058 5635 779517547 779518122 0.000000e+00 922.0
28 TraesCS1D01G339000 chr3B 95.337 579 25 1 5058 5636 735975273 735975849 0.000000e+00 918.0
29 TraesCS1D01G339000 chr3B 98.086 209 4 0 4731 4939 735974831 735975039 1.530000e-96 364.0
30 TraesCS1D01G339000 chr3B 86.744 347 17 7 1240 1566 735973631 735973968 7.120000e-95 359.0
31 TraesCS1D01G339000 chr3B 96.032 126 5 0 4939 5064 735975100 735975225 9.820000e-49 206.0
32 TraesCS1D01G339000 chr3B 96.032 126 5 0 4939 5064 804134806 804134681 9.820000e-49 206.0
33 TraesCS1D01G339000 chr3B 90.722 97 6 3 4567 4662 735974750 735974844 7.860000e-25 126.0
34 TraesCS1D01G339000 chr3B 90.722 97 6 3 4566 4661 804135177 804135083 7.860000e-25 126.0
35 TraesCS1D01G339000 chr3B 90.278 72 7 0 7393 7464 52195276 52195347 2.220000e-15 95.3
36 TraesCS1D01G339000 chr3B 80.952 84 10 3 2505 2582 377145532 377145615 2.250000e-05 62.1
37 TraesCS1D01G339000 chr3B 97.059 34 1 0 2505 2538 779514513 779514546 2.910000e-04 58.4
38 TraesCS1D01G339000 chr2B 97.095 2100 47 6 2501 4587 520923539 520925637 0.000000e+00 3528.0
39 TraesCS1D01G339000 chr2B 93.840 763 40 2 2506 3261 26898218 26897456 0.000000e+00 1142.0
40 TraesCS1D01G339000 chr2B 95.361 582 24 2 5058 5639 520926372 520926950 0.000000e+00 922.0
41 TraesCS1D01G339000 chr2B 97.899 238 2 3 2084 2319 53461660 53461896 6.970000e-110 409.0
42 TraesCS1D01G339000 chr2B 98.086 209 4 0 4731 4939 520925933 520926141 1.530000e-96 364.0
43 TraesCS1D01G339000 chr2B 86.167 347 19 7 1240 1566 53460500 53460837 1.540000e-91 348.0
44 TraesCS1D01G339000 chr2B 93.750 208 8 2 2392 2596 26899070 26898865 2.620000e-79 307.0
45 TraesCS1D01G339000 chr2B 96.104 154 6 0 466 619 53460129 53460282 1.240000e-62 252.0
46 TraesCS1D01G339000 chr2B 96.575 146 5 0 994 1139 53460357 53460502 7.480000e-60 243.0
47 TraesCS1D01G339000 chr2B 96.032 126 5 0 4939 5064 520926202 520926327 9.820000e-49 206.0
48 TraesCS1D01G339000 chr2B 96.739 92 2 1 1949 2039 53461442 53461533 1.300000e-32 152.0
49 TraesCS1D01G339000 chr2B 98.305 59 1 0 2382 2440 53461969 53462027 3.680000e-18 104.0
50 TraesCS1D01G339000 chr2B 100.000 34 0 0 2122 2155 53461549 53461582 6.250000e-06 63.9
51 TraesCS1D01G339000 chr5B 96.665 2099 53 6 2501 4587 355613903 355615996 0.000000e+00 3472.0
52 TraesCS1D01G339000 chr5B 98.086 209 4 0 4731 4939 262567122 262566914 1.530000e-96 364.0
53 TraesCS1D01G339000 chr5B 86.744 347 17 7 1240 1566 262568322 262567985 7.120000e-95 359.0
54 TraesCS1D01G339000 chr5B 96.154 78 2 1 4585 4662 262567185 262567109 7.860000e-25 126.0
55 TraesCS1D01G339000 chr5B 97.059 34 1 0 2505 2538 355613975 355614008 2.910000e-04 58.4
56 TraesCS1D01G339000 chr1B 93.081 1402 64 17 5639 7017 580438862 580437471 0.000000e+00 2021.0
57 TraesCS1D01G339000 chr1B 86.809 470 37 14 2 467 580439308 580438860 1.120000e-137 501.0
58 TraesCS1D01G339000 chr1B 84.350 377 30 7 7016 7391 580437439 580437091 7.170000e-90 342.0
59 TraesCS1D01G339000 chr1B 90.411 73 7 0 7392 7464 151093181 151093109 6.170000e-16 97.1
60 TraesCS1D01G339000 chr1B 96.970 33 1 0 4693 4725 686841936 686841904 1.000000e-03 56.5
61 TraesCS1D01G339000 chr1A 90.805 1218 47 20 5938 7113 526738242 526737048 0.000000e+00 1568.0
62 TraesCS1D01G339000 chr1A 95.156 578 26 1 5058 5635 565151279 565151854 0.000000e+00 911.0
63 TraesCS1D01G339000 chr1A 86.179 369 33 12 110 467 526738844 526738483 4.230000e-102 383.0
64 TraesCS1D01G339000 chr1A 98.086 209 4 0 4731 4939 565150837 565151045 1.530000e-96 364.0
65 TraesCS1D01G339000 chr1A 86.744 347 17 7 1240 1566 565149645 565149982 7.120000e-95 359.0
66 TraesCS1D01G339000 chr1A 84.644 267 18 8 5639 5904 526738485 526738241 2.080000e-60 244.0
67 TraesCS1D01G339000 chr1A 95.890 146 6 0 994 1139 565149502 565149647 3.480000e-58 237.0
68 TraesCS1D01G339000 chr1A 96.032 126 5 0 4939 5064 565151106 565151231 9.820000e-49 206.0
69 TraesCS1D01G339000 chr1A 83.550 231 24 7 7157 7387 526737048 526736832 3.530000e-48 204.0
70 TraesCS1D01G339000 chr1A 89.691 97 7 3 4567 4662 565150756 565150850 3.660000e-23 121.0
71 TraesCS1D01G339000 chr1A 94.521 73 4 0 7392 7464 104946165 104946093 6.120000e-21 113.0
72 TraesCS1D01G339000 chr1A 96.970 33 1 0 4693 4725 592089263 592089231 1.000000e-03 56.5
73 TraesCS1D01G339000 chr7B 86.096 712 43 16 1004 1689 747327612 747326931 0.000000e+00 715.0
74 TraesCS1D01G339000 chr7B 98.450 129 2 0 1706 1834 747326802 747326674 2.100000e-55 228.0
75 TraesCS1D01G339000 chr6B 87.905 587 41 14 994 1566 202352655 202353225 0.000000e+00 664.0
76 TraesCS1D01G339000 chr6B 94.660 206 11 0 1118 1323 636392735 636392940 3.360000e-83 320.0
77 TraesCS1D01G339000 chr6B 85.338 266 33 4 7016 7280 54899261 54899001 3.430000e-68 270.0
78 TraesCS1D01G339000 chr6B 83.883 273 31 8 7013 7280 54697071 54697335 1.610000e-61 248.0
79 TraesCS1D01G339000 chr6B 83.643 269 38 5 7013 7280 54729070 54729333 1.610000e-61 248.0
80 TraesCS1D01G339000 chr6B 83.643 269 38 5 7013 7280 54775570 54775833 1.610000e-61 248.0
81 TraesCS1D01G339000 chr6A 87.822 583 44 12 996 1566 146494456 146493889 0.000000e+00 658.0
82 TraesCS1D01G339000 chr6A 83.730 252 24 12 7040 7281 29127663 29127419 9.750000e-54 222.0
83 TraesCS1D01G339000 chr6D 92.233 206 16 0 1118 1323 422078620 422078825 7.330000e-75 292.0
84 TraesCS1D01G339000 chr6D 88.158 76 9 0 7390 7465 361169346 361169421 2.870000e-14 91.6
85 TraesCS1D01G339000 chr5D 88.546 227 17 4 2071 2295 73775278 73775497 4.440000e-67 267.0
86 TraesCS1D01G339000 chr5D 87.168 226 24 4 2088 2309 67965709 67965933 1.240000e-62 252.0
87 TraesCS1D01G339000 chrUn 94.156 154 9 0 466 619 103403644 103403491 1.250000e-57 235.0
88 TraesCS1D01G339000 chrUn 92.593 162 10 2 460 619 30054129 30054290 1.620000e-56 231.0
89 TraesCS1D01G339000 chrUn 87.755 196 20 4 7087 7281 103500944 103501136 7.540000e-55 226.0
90 TraesCS1D01G339000 chr3A 81.203 266 42 8 7039 7302 564558988 564558729 2.730000e-49 207.0
91 TraesCS1D01G339000 chr4B 88.889 162 18 0 2490 2651 14523846 14524007 4.570000e-47 200.0
92 TraesCS1D01G339000 chr2A 94.030 67 4 0 7397 7463 650104958 650105024 1.330000e-17 102.0
93 TraesCS1D01G339000 chr2D 88.158 76 9 0 7390 7465 87244295 87244220 2.870000e-14 91.6
94 TraesCS1D01G339000 chr2D 97.143 35 1 0 1912 1946 636921913 636921879 8.090000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G339000 chr1D 428611422 428618886 7464 True 6548.000000 11952 100.000000 1 7465 2 chr1D.!!$R1 7464
1 TraesCS1D01G339000 chr1D 414710297 414715332 5035 False 4211.500000 8168 99.268000 466 5644 2 chr1D.!!$F3 5178
2 TraesCS1D01G339000 chr3D 572501887 572506997 5110 True 4156.500000 8043 98.455500 466 5635 2 chr3D.!!$R3 5169
3 TraesCS1D01G339000 chr3D 578902737 578905355 2618 False 1081.000000 1910 94.624500 466 5636 2 chr3D.!!$F2 5170
4 TraesCS1D01G339000 chr7D 69445488 69450135 4647 True 3894.500000 6778 97.242000 1007 5632 2 chr7D.!!$R2 4625
5 TraesCS1D01G339000 chr7D 443141775 443143627 1852 True 3217.000000 3217 98.057000 2503 4349 1 chr7D.!!$R1 1846
6 TraesCS1D01G339000 chr5A 137040548 137046780 6232 True 1900.500000 3938 94.656250 467 5638 4 chr5A.!!$R4 5171
7 TraesCS1D01G339000 chr5A 609201102 609201678 576 False 929.000000 929 95.690000 5058 5636 1 chr5A.!!$F2 578
8 TraesCS1D01G339000 chr3B 779514441 779518122 3681 False 1503.800000 3531 96.569667 2501 5635 3 chr3B.!!$F4 3134
9 TraesCS1D01G339000 chr3B 804134681 804137487 2806 True 1280.333333 3509 94.568333 2501 5064 3 chr3B.!!$R1 2563
10 TraesCS1D01G339000 chr3B 735973631 735975849 2218 False 394.600000 918 93.384200 1240 5636 5 chr3B.!!$F3 4396
11 TraesCS1D01G339000 chr2B 520923539 520926950 3411 False 1255.000000 3528 96.643500 2501 5639 4 chr2B.!!$F2 3138
12 TraesCS1D01G339000 chr2B 26897456 26899070 1614 True 724.500000 1142 93.795000 2392 3261 2 chr2B.!!$R1 869
13 TraesCS1D01G339000 chr2B 53460129 53462027 1898 False 224.557143 409 95.969857 466 2440 7 chr2B.!!$F1 1974
14 TraesCS1D01G339000 chr5B 355613903 355615996 2093 False 1765.200000 3472 96.862000 2501 4587 2 chr5B.!!$F1 2086
15 TraesCS1D01G339000 chr5B 262566914 262568322 1408 True 283.000000 364 93.661333 1240 4939 3 chr5B.!!$R1 3699
16 TraesCS1D01G339000 chr1B 580437091 580439308 2217 True 954.666667 2021 88.080000 2 7391 3 chr1B.!!$R3 7389
17 TraesCS1D01G339000 chr1A 526736832 526738844 2012 True 599.750000 1568 86.294500 110 7387 4 chr1A.!!$R3 7277
18 TraesCS1D01G339000 chr1A 565149502 565151854 2352 False 366.333333 911 93.599833 994 5635 6 chr1A.!!$F1 4641
19 TraesCS1D01G339000 chr7B 747326674 747327612 938 True 471.500000 715 92.273000 1004 1834 2 chr7B.!!$R1 830
20 TraesCS1D01G339000 chr6B 202352655 202353225 570 False 664.000000 664 87.905000 994 1566 1 chr6B.!!$F4 572
21 TraesCS1D01G339000 chr6A 146493889 146494456 567 True 658.000000 658 87.822000 996 1566 1 chr6A.!!$R2 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.812811 GCTGCTCGCAATGATCCTCA 60.813 55.000 0.00 0.0 38.92 3.86 F
450 455 1.473258 GCACATAGCCCATGGTGAAA 58.527 50.000 11.73 0.0 39.13 2.69 F
451 456 2.034124 GCACATAGCCCATGGTGAAAT 58.966 47.619 11.73 0.0 39.13 2.17 F
457 462 2.328319 AGCCCATGGTGAAATTGTTGT 58.672 42.857 11.73 0.0 0.00 3.32 F
2975 5564 0.543174 GGTGTGGGACTGGAGAGACT 60.543 60.000 0.00 0.0 0.00 3.24 F
5661 9765 0.108520 TAAACGCGGACAGTGGGATC 60.109 55.000 12.47 0.0 33.90 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1187 2181 3.986006 GGTGCTGGGACGACGACA 61.986 66.667 0.00 0.00 0.00 4.35 R
2425 4071 4.032960 TGGTGCTAGGAATGACATTTGT 57.967 40.909 1.39 0.00 0.00 2.83 R
2975 5564 8.515695 AACATTCTTGATCTCTGCATATTCAA 57.484 30.769 0.00 0.00 0.00 2.69 R
3510 6099 3.063997 GTGTGAAGATTATTGGTCTGCGG 59.936 47.826 0.00 0.00 0.00 5.69 R
5928 10038 0.250038 CTCCATGTATGTCGGGCAGG 60.250 60.000 0.00 0.00 0.00 4.85 R
7112 11286 0.239347 GCACCTGTGTGATCACTTGC 59.761 55.000 25.55 19.83 45.76 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.275291 AGCAGCTGTATGTGTACCGTT 59.725 47.619 16.64 0.00 0.00 4.44
79 80 3.430374 GCTGTATGTGTACCGTTGGATCT 60.430 47.826 0.00 0.00 0.00 2.75
81 82 3.764972 TGTATGTGTACCGTTGGATCTGA 59.235 43.478 0.00 0.00 0.00 3.27
82 83 3.973206 ATGTGTACCGTTGGATCTGAA 57.027 42.857 0.00 0.00 0.00 3.02
83 84 3.755112 TGTGTACCGTTGGATCTGAAA 57.245 42.857 0.00 0.00 0.00 2.69
84 85 4.074627 TGTGTACCGTTGGATCTGAAAA 57.925 40.909 0.00 0.00 0.00 2.29
85 86 4.647611 TGTGTACCGTTGGATCTGAAAAT 58.352 39.130 0.00 0.00 0.00 1.82
87 88 4.693566 GTGTACCGTTGGATCTGAAAATGA 59.306 41.667 0.00 0.00 0.00 2.57
88 89 5.354234 GTGTACCGTTGGATCTGAAAATGAT 59.646 40.000 0.00 0.00 0.00 2.45
89 90 6.537301 GTGTACCGTTGGATCTGAAAATGATA 59.463 38.462 0.00 0.00 0.00 2.15
90 91 6.537301 TGTACCGTTGGATCTGAAAATGATAC 59.463 38.462 0.00 0.00 0.00 2.24
91 92 4.570772 ACCGTTGGATCTGAAAATGATACG 59.429 41.667 0.00 0.00 0.00 3.06
93 94 5.064707 CCGTTGGATCTGAAAATGATACGTT 59.935 40.000 0.00 0.00 0.00 3.99
94 95 6.403200 CCGTTGGATCTGAAAATGATACGTTT 60.403 38.462 0.00 0.00 0.00 3.60
95 96 7.021196 CGTTGGATCTGAAAATGATACGTTTT 58.979 34.615 0.00 0.00 0.00 2.43
96 97 8.172484 CGTTGGATCTGAAAATGATACGTTTTA 58.828 33.333 0.00 0.00 0.00 1.52
123 124 1.227639 CATGGAGTATGCAGCTGCTC 58.772 55.000 36.61 25.65 42.42 4.26
136 137 0.812811 GCTGCTCGCAATGATCCTCA 60.813 55.000 0.00 0.00 38.92 3.86
191 196 7.660208 ACTCACTAATGATACGTTTGAGGTTTT 59.340 33.333 0.00 0.00 34.55 2.43
312 317 3.254903 TCATGAGTTAGTACGTGTGCACT 59.745 43.478 19.41 0.00 0.00 4.40
313 318 4.456566 TCATGAGTTAGTACGTGTGCACTA 59.543 41.667 19.41 1.23 0.00 2.74
318 323 6.364165 TGAGTTAGTACGTGTGCACTATTTTC 59.636 38.462 19.41 4.56 0.00 2.29
325 330 7.918562 AGTACGTGTGCACTATTTTCAAAATTT 59.081 29.630 19.41 0.00 0.00 1.82
341 346 8.614469 TTCAAAATTTAAATTTCGGCAAGGAT 57.386 26.923 22.96 5.06 37.62 3.24
343 348 8.502387 TCAAAATTTAAATTTCGGCAAGGATTG 58.498 29.630 22.96 14.53 42.52 2.67
362 367 8.706322 AGGATTGGTCTAACAATACAAAGTTT 57.294 30.769 5.77 0.00 42.84 2.66
363 368 9.802039 AGGATTGGTCTAACAATACAAAGTTTA 57.198 29.630 5.77 0.00 42.84 2.01
368 373 9.562408 TGGTCTAACAATACAAAGTTTATGTCA 57.438 29.630 0.00 0.00 32.27 3.58
395 400 8.905660 ATGAATTTGAAAACATTGGATTCACA 57.094 26.923 6.04 1.87 35.59 3.58
396 401 8.905660 TGAATTTGAAAACATTGGATTCACAT 57.094 26.923 6.04 3.73 33.13 3.21
397 402 9.339850 TGAATTTGAAAACATTGGATTCACATT 57.660 25.926 13.39 13.39 36.62 2.71
411 416 9.541143 TTGGATTCACATTTAAAAGAAGTTTCC 57.459 29.630 0.00 5.40 0.00 3.13
412 417 8.700051 TGGATTCACATTTAAAAGAAGTTTCCA 58.300 29.630 12.99 12.99 29.17 3.53
413 418 9.541143 GGATTCACATTTAAAAGAAGTTTCCAA 57.459 29.630 0.00 0.00 0.00 3.53
416 421 8.885494 TCACATTTAAAAGAAGTTTCCAATGG 57.115 30.769 0.00 0.00 35.83 3.16
417 422 8.482128 TCACATTTAAAAGAAGTTTCCAATGGT 58.518 29.630 0.00 0.00 35.83 3.55
418 423 8.550376 CACATTTAAAAGAAGTTTCCAATGGTG 58.450 33.333 0.00 0.00 35.83 4.17
419 424 8.264347 ACATTTAAAAGAAGTTTCCAATGGTGT 58.736 29.630 0.00 0.00 35.83 4.16
420 425 9.757227 CATTTAAAAGAAGTTTCCAATGGTGTA 57.243 29.630 0.00 0.00 31.81 2.90
425 430 9.679661 AAAAGAAGTTTCCAATGGTGTAATTTT 57.320 25.926 0.00 0.00 0.00 1.82
426 431 9.679661 AAAGAAGTTTCCAATGGTGTAATTTTT 57.320 25.926 0.00 0.00 0.00 1.94
448 453 4.984194 GCACATAGCCCATGGTGA 57.016 55.556 11.73 0.00 39.13 4.02
449 454 3.189568 GCACATAGCCCATGGTGAA 57.810 52.632 11.73 0.00 39.13 3.18
450 455 1.473258 GCACATAGCCCATGGTGAAA 58.527 50.000 11.73 0.00 39.13 2.69
451 456 2.034124 GCACATAGCCCATGGTGAAAT 58.966 47.619 11.73 0.00 39.13 2.17
452 457 2.431782 GCACATAGCCCATGGTGAAATT 59.568 45.455 11.73 0.00 39.13 1.82
453 458 3.738899 GCACATAGCCCATGGTGAAATTG 60.739 47.826 11.73 2.20 39.13 2.32
454 459 3.448301 CACATAGCCCATGGTGAAATTGT 59.552 43.478 11.73 3.88 39.13 2.71
455 460 4.081531 CACATAGCCCATGGTGAAATTGTT 60.082 41.667 11.73 0.00 39.13 2.83
456 461 4.081531 ACATAGCCCATGGTGAAATTGTTG 60.082 41.667 11.73 0.00 39.13 3.33
457 462 2.328319 AGCCCATGGTGAAATTGTTGT 58.672 42.857 11.73 0.00 0.00 3.32
458 463 3.505386 AGCCCATGGTGAAATTGTTGTA 58.495 40.909 11.73 0.00 0.00 2.41
459 464 3.900601 AGCCCATGGTGAAATTGTTGTAA 59.099 39.130 11.73 0.00 0.00 2.41
460 465 4.346418 AGCCCATGGTGAAATTGTTGTAAA 59.654 37.500 11.73 0.00 0.00 2.01
1173 2167 4.722535 AGCTTCCTCCCGCCCTCA 62.723 66.667 0.00 0.00 0.00 3.86
1721 3073 6.867550 AGCAGCCTAGAAAAATTAAACATCC 58.132 36.000 0.00 0.00 0.00 3.51
2975 5564 0.543174 GGTGTGGGACTGGAGAGACT 60.543 60.000 0.00 0.00 0.00 3.24
3152 5741 0.970937 TCCTTCATCTTCGTCCGGCT 60.971 55.000 0.00 0.00 0.00 5.52
3338 5927 3.800826 GTGACCTCACCACCTTTGT 57.199 52.632 0.00 0.00 40.85 2.83
3510 6099 3.002348 GCTATGTTGTCTAATTCCCGTGC 59.998 47.826 0.00 0.00 0.00 5.34
3544 6133 3.354948 TCTTCACACATAGCCAAGCAT 57.645 42.857 0.00 0.00 0.00 3.79
4373 7231 7.435068 TCTGGTCAAGTTAAATCAGCTAAAC 57.565 36.000 0.00 0.00 0.00 2.01
4384 7242 3.222173 TCAGCTAAACCAAAGAGGCAA 57.778 42.857 0.00 0.00 43.14 4.52
4636 7836 9.472361 GTACTGAATAAAACTGTTCTGTACTGA 57.528 33.333 19.21 0.00 45.80 3.41
4637 7837 8.958119 ACTGAATAAAACTGTTCTGTACTGAA 57.042 30.769 10.80 10.80 35.59 3.02
4638 7838 9.561069 ACTGAATAAAACTGTTCTGTACTGAAT 57.439 29.630 16.94 4.29 35.59 2.57
4646 7846 8.732746 AACTGTTCTGTACTGAATAAAACTGT 57.267 30.769 16.94 11.67 0.00 3.55
4647 7847 8.732746 ACTGTTCTGTACTGAATAAAACTGTT 57.267 30.769 16.94 0.00 0.00 3.16
4648 7848 8.827677 ACTGTTCTGTACTGAATAAAACTGTTC 58.172 33.333 16.94 2.83 0.00 3.18
4649 7849 8.958119 TGTTCTGTACTGAATAAAACTGTTCT 57.042 30.769 16.94 0.00 0.00 3.01
4650 7850 8.826710 TGTTCTGTACTGAATAAAACTGTTCTG 58.173 33.333 16.94 0.00 0.00 3.02
4651 7851 8.827677 GTTCTGTACTGAATAAAACTGTTCTGT 58.172 33.333 16.94 0.00 39.08 3.41
5463 9554 0.115152 TCTCTGGGTGCTGAGGAGAA 59.885 55.000 0.00 0.00 31.28 2.87
5464 9555 0.248843 CTCTGGGTGCTGAGGAGAAC 59.751 60.000 0.00 0.00 0.00 3.01
5465 9556 1.079543 CTGGGTGCTGAGGAGAACG 60.080 63.158 0.00 0.00 0.00 3.95
5466 9557 2.266055 GGGTGCTGAGGAGAACGG 59.734 66.667 0.00 0.00 0.00 4.44
5467 9558 2.266055 GGTGCTGAGGAGAACGGG 59.734 66.667 0.00 0.00 0.00 5.28
5468 9559 2.266055 GTGCTGAGGAGAACGGGG 59.734 66.667 0.00 0.00 0.00 5.73
5469 9560 3.003173 TGCTGAGGAGAACGGGGG 61.003 66.667 0.00 0.00 0.00 5.40
5470 9561 2.683933 GCTGAGGAGAACGGGGGA 60.684 66.667 0.00 0.00 0.00 4.81
5471 9562 2.726351 GCTGAGGAGAACGGGGGAG 61.726 68.421 0.00 0.00 0.00 4.30
5472 9563 2.038975 TGAGGAGAACGGGGGAGG 59.961 66.667 0.00 0.00 0.00 4.30
5473 9564 2.363361 GAGGAGAACGGGGGAGGA 59.637 66.667 0.00 0.00 0.00 3.71
5474 9565 1.305887 GAGGAGAACGGGGGAGGAA 60.306 63.158 0.00 0.00 0.00 3.36
5475 9566 1.306226 AGGAGAACGGGGGAGGAAG 60.306 63.158 0.00 0.00 0.00 3.46
5648 9752 4.274705 GGAGGGAGTACTACTAGTAAACGC 59.725 50.000 4.77 7.07 31.62 4.84
5660 9764 0.390735 GTAAACGCGGACAGTGGGAT 60.391 55.000 12.47 0.00 33.90 3.85
5661 9765 0.108520 TAAACGCGGACAGTGGGATC 60.109 55.000 12.47 0.00 33.90 3.36
5662 9766 2.107041 AAACGCGGACAGTGGGATCA 62.107 55.000 12.47 0.00 33.90 2.92
5664 9768 1.811266 CGCGGACAGTGGGATCAAG 60.811 63.158 0.00 0.00 0.00 3.02
5665 9769 1.296715 GCGGACAGTGGGATCAAGT 59.703 57.895 0.00 0.00 0.00 3.16
5666 9770 0.321653 GCGGACAGTGGGATCAAGTT 60.322 55.000 0.00 0.00 0.00 2.66
5705 9809 3.506067 AGCCGAACCCAAAGACAAAATAG 59.494 43.478 0.00 0.00 0.00 1.73
5712 9816 6.670695 ACCCAAAGACAAAATAGCTGAAAT 57.329 33.333 0.00 0.00 0.00 2.17
5752 9856 4.280677 GGTGACAGAAATTTGGAACCATCA 59.719 41.667 0.00 0.00 31.56 3.07
5754 9858 4.892345 TGACAGAAATTTGGAACCATCACA 59.108 37.500 0.00 0.00 0.00 3.58
5785 9889 1.076438 CCCCCTTTGTCTCTTCCCTT 58.924 55.000 0.00 0.00 0.00 3.95
5796 9900 5.094387 TGTCTCTTCCCTTCTAATCCAACT 58.906 41.667 0.00 0.00 0.00 3.16
5811 9915 3.426615 TCCAACTCTCTCTGAGACCTTC 58.573 50.000 2.58 0.00 45.39 3.46
5812 9916 3.161067 CCAACTCTCTCTGAGACCTTCA 58.839 50.000 2.58 0.00 45.39 3.02
5814 9918 4.381825 CCAACTCTCTCTGAGACCTTCATG 60.382 50.000 2.58 0.00 45.39 3.07
5815 9919 4.314522 ACTCTCTCTGAGACCTTCATGA 57.685 45.455 2.58 0.00 45.39 3.07
5816 9920 4.671831 ACTCTCTCTGAGACCTTCATGAA 58.328 43.478 8.12 8.12 45.39 2.57
5853 9959 1.734655 ACCCCTCACTCACATTCAGT 58.265 50.000 0.00 0.00 0.00 3.41
5873 9983 1.621992 TGAGACCTCAGACTCACACC 58.378 55.000 0.00 0.00 39.41 4.16
5925 10035 1.101049 GCCTCTGTCTCTCGCTAGCT 61.101 60.000 13.93 0.00 0.00 3.32
5928 10038 1.330521 CTCTGTCTCTCGCTAGCTGTC 59.669 57.143 13.93 0.00 0.00 3.51
5931 10041 0.380378 GTCTCTCGCTAGCTGTCCTG 59.620 60.000 13.93 0.00 0.00 3.86
6284 10399 4.807631 TGATCGACCCGGCCGAGA 62.808 66.667 30.73 20.10 39.55 4.04
6303 10418 1.830477 GAGCCTCAGATGACTCCTTGT 59.170 52.381 0.00 0.00 0.00 3.16
6304 10419 1.554160 AGCCTCAGATGACTCCTTGTG 59.446 52.381 0.00 0.00 0.00 3.33
6441 10556 3.316308 GCAGACTGTTCTTGTCCAAATGT 59.684 43.478 3.99 0.00 35.21 2.71
6442 10557 4.790766 GCAGACTGTTCTTGTCCAAATGTG 60.791 45.833 3.99 0.00 35.21 3.21
6443 10558 3.316308 AGACTGTTCTTGTCCAAATGTGC 59.684 43.478 0.00 0.00 35.21 4.57
6444 10559 3.023119 ACTGTTCTTGTCCAAATGTGCA 58.977 40.909 0.00 0.00 0.00 4.57
6499 10619 2.831526 TGTCTTCCTGTGATGATCCGAA 59.168 45.455 0.00 0.00 0.00 4.30
6511 10635 1.330306 GATCCGAACGAACGAACGAA 58.670 50.000 11.97 1.00 37.03 3.85
6559 10685 0.405198 TGGTGACTGGCCATGTGAAT 59.595 50.000 5.51 0.00 0.00 2.57
6564 10690 2.571202 TGACTGGCCATGTGAATAGTGA 59.429 45.455 5.51 0.00 0.00 3.41
6784 10917 3.305720 AGCCAGGGAGAATATGACGTTA 58.694 45.455 0.00 0.00 0.00 3.18
6828 10964 1.915141 CAAAGTGGGGCTGATCAACT 58.085 50.000 0.00 0.00 0.00 3.16
6844 10980 0.984995 AACTACTGGGGGAGTCAAGC 59.015 55.000 0.00 0.00 35.96 4.01
6906 11042 2.360350 AGTCCCGGTTACGCTCGA 60.360 61.111 0.00 0.00 39.22 4.04
6937 11075 0.548989 TGGTCCAAATATCCGGTGGG 59.451 55.000 8.10 0.00 32.95 4.61
6987 11125 1.274703 GGGTGGAGAGATGGCCTTCA 61.275 60.000 19.98 0.00 0.00 3.02
7009 11147 2.359975 GGGAACTTGCGTCCAGGG 60.360 66.667 0.00 0.00 0.00 4.45
7014 11152 2.594303 CTTGCGTCCAGGGCAACA 60.594 61.111 0.00 0.00 44.79 3.33
7069 11243 2.420547 CCAGCAGGAGCAGCTACATTTA 60.421 50.000 7.59 0.00 45.49 1.40
7071 11245 2.503356 AGCAGGAGCAGCTACATTTAGT 59.497 45.455 7.59 0.00 45.49 2.24
7073 11247 3.064545 GCAGGAGCAGCTACATTTAGTTG 59.935 47.826 7.59 0.00 39.06 3.16
7074 11248 4.507710 CAGGAGCAGCTACATTTAGTTGA 58.492 43.478 7.59 0.00 38.49 3.18
7075 11249 5.121811 CAGGAGCAGCTACATTTAGTTGAT 58.878 41.667 7.59 0.09 38.49 2.57
7077 11251 6.763135 CAGGAGCAGCTACATTTAGTTGATTA 59.237 38.462 7.59 0.00 38.49 1.75
7078 11252 7.443575 CAGGAGCAGCTACATTTAGTTGATTAT 59.556 37.037 7.59 0.00 38.49 1.28
7080 11254 9.273016 GGAGCAGCTACATTTAGTTGATTATTA 57.727 33.333 0.00 0.00 38.49 0.98
7112 11286 1.072173 TGTGATGTCAGGTCTGGTTGG 59.928 52.381 0.00 0.00 0.00 3.77
7139 11313 2.122144 ACACAGGTGCCCCCACTA 60.122 61.111 0.00 0.00 41.75 2.74
7146 11320 4.169696 TGCCCCCACTAATCCGCG 62.170 66.667 0.00 0.00 0.00 6.46
7180 11354 1.697432 ACTAGTGCCTGCTGGTGTAAA 59.303 47.619 11.69 0.00 35.27 2.01
7182 11356 0.890996 AGTGCCTGCTGGTGTAAAGC 60.891 55.000 11.69 0.00 41.22 3.51
7278 11452 2.423898 TTCGATCCCCAGCGGAGTC 61.424 63.158 0.00 0.00 46.60 3.36
7281 11455 2.835431 ATCCCCAGCGGAGTCGAG 60.835 66.667 0.00 0.00 46.60 4.04
7283 11457 2.280404 ATCCCCAGCGGAGTCGAGTA 62.280 60.000 0.00 0.00 46.60 2.59
7284 11458 2.050350 CCCCAGCGGAGTCGAGTAA 61.050 63.158 0.00 0.00 39.00 2.24
7285 11459 1.392710 CCCCAGCGGAGTCGAGTAAT 61.393 60.000 0.00 0.00 39.00 1.89
7286 11460 0.460311 CCCAGCGGAGTCGAGTAATT 59.540 55.000 0.00 0.00 39.00 1.40
7287 11461 1.134788 CCCAGCGGAGTCGAGTAATTT 60.135 52.381 0.00 0.00 39.00 1.82
7288 11462 2.618053 CCAGCGGAGTCGAGTAATTTT 58.382 47.619 0.00 0.00 39.00 1.82
7289 11463 3.000727 CCAGCGGAGTCGAGTAATTTTT 58.999 45.455 0.00 0.00 39.00 1.94
7290 11464 3.181520 CCAGCGGAGTCGAGTAATTTTTG 60.182 47.826 0.00 0.00 39.00 2.44
7291 11465 3.000727 AGCGGAGTCGAGTAATTTTTGG 58.999 45.455 0.00 0.00 39.00 3.28
7292 11466 2.740447 GCGGAGTCGAGTAATTTTTGGT 59.260 45.455 0.00 0.00 39.00 3.67
7293 11467 3.928375 GCGGAGTCGAGTAATTTTTGGTA 59.072 43.478 0.00 0.00 39.00 3.25
7294 11468 4.201656 GCGGAGTCGAGTAATTTTTGGTAC 60.202 45.833 0.00 0.00 39.00 3.34
7295 11469 4.925054 CGGAGTCGAGTAATTTTTGGTACA 59.075 41.667 0.00 0.00 39.00 2.90
7296 11470 5.579511 CGGAGTCGAGTAATTTTTGGTACAT 59.420 40.000 0.00 0.00 36.90 2.29
7301 11475 9.458374 AGTCGAGTAATTTTTGGTACATTTTTG 57.542 29.630 0.00 0.00 39.30 2.44
7302 11476 9.240159 GTCGAGTAATTTTTGGTACATTTTTGT 57.760 29.630 0.00 0.00 39.30 2.83
7313 11487 6.831976 TGGTACATTTTTGTTTTATGCCCTT 58.168 32.000 0.00 0.00 0.00 3.95
7322 11496 8.880878 TTTTGTTTTATGCCCTTCTAGTTTTC 57.119 30.769 0.00 0.00 0.00 2.29
7327 11501 3.140325 TGCCCTTCTAGTTTTCAGTGG 57.860 47.619 0.00 0.00 0.00 4.00
7329 11503 2.880167 GCCCTTCTAGTTTTCAGTGGGG 60.880 54.545 0.00 0.00 34.29 4.96
7332 11506 3.328050 CCTTCTAGTTTTCAGTGGGGTCT 59.672 47.826 0.00 0.00 0.00 3.85
7344 11518 4.140782 TCAGTGGGGTCTGAGCCTATAATA 60.141 45.833 23.77 4.50 39.20 0.98
7345 11519 4.221703 CAGTGGGGTCTGAGCCTATAATAG 59.778 50.000 23.77 5.63 37.61 1.73
7368 11542 9.905713 ATAGCAATATTTTAACAGAGTCAAGGA 57.094 29.630 0.00 0.00 0.00 3.36
7370 11544 7.337942 AGCAATATTTTAACAGAGTCAAGGAGG 59.662 37.037 0.00 0.00 0.00 4.30
7372 11546 9.231297 CAATATTTTAACAGAGTCAAGGAGGAA 57.769 33.333 0.00 0.00 0.00 3.36
7374 11548 9.981460 ATATTTTAACAGAGTCAAGGAGGAATT 57.019 29.630 0.00 0.00 0.00 2.17
7375 11549 7.510549 TTTTAACAGAGTCAAGGAGGAATTG 57.489 36.000 0.00 0.00 0.00 2.32
7381 11555 4.829492 AGAGTCAAGGAGGAATTGGTTTTG 59.171 41.667 0.00 0.00 0.00 2.44
7391 11565 4.528206 AGGAATTGGTTTTGCCCTTTCTAG 59.472 41.667 0.00 0.00 36.04 2.43
7392 11566 4.283467 GGAATTGGTTTTGCCCTTTCTAGT 59.717 41.667 0.00 0.00 36.04 2.57
7393 11567 5.479027 GGAATTGGTTTTGCCCTTTCTAGTA 59.521 40.000 0.00 0.00 36.04 1.82
7394 11568 5.977489 ATTGGTTTTGCCCTTTCTAGTAC 57.023 39.130 0.00 0.00 36.04 2.73
7395 11569 4.717279 TGGTTTTGCCCTTTCTAGTACT 57.283 40.909 0.00 0.00 36.04 2.73
7396 11570 4.648651 TGGTTTTGCCCTTTCTAGTACTC 58.351 43.478 0.00 0.00 36.04 2.59
7397 11571 4.008330 GGTTTTGCCCTTTCTAGTACTCC 58.992 47.826 0.00 0.00 0.00 3.85
7398 11572 3.994931 TTTGCCCTTTCTAGTACTCCC 57.005 47.619 0.00 0.00 0.00 4.30
7399 11573 2.942604 TGCCCTTTCTAGTACTCCCT 57.057 50.000 0.00 0.00 0.00 4.20
7400 11574 2.748388 TGCCCTTTCTAGTACTCCCTC 58.252 52.381 0.00 0.00 0.00 4.30
7401 11575 2.040939 GCCCTTTCTAGTACTCCCTCC 58.959 57.143 0.00 0.00 0.00 4.30
7402 11576 2.308690 CCCTTTCTAGTACTCCCTCCG 58.691 57.143 0.00 0.00 0.00 4.63
7403 11577 2.357986 CCCTTTCTAGTACTCCCTCCGT 60.358 54.545 0.00 0.00 0.00 4.69
7404 11578 3.363627 CCTTTCTAGTACTCCCTCCGTT 58.636 50.000 0.00 0.00 0.00 4.44
7405 11579 3.380954 CCTTTCTAGTACTCCCTCCGTTC 59.619 52.174 0.00 0.00 0.00 3.95
7406 11580 2.725221 TCTAGTACTCCCTCCGTTCC 57.275 55.000 0.00 0.00 0.00 3.62
7407 11581 1.918262 TCTAGTACTCCCTCCGTTCCA 59.082 52.381 0.00 0.00 0.00 3.53
7408 11582 2.512896 TCTAGTACTCCCTCCGTTCCAT 59.487 50.000 0.00 0.00 0.00 3.41
7409 11583 3.718434 TCTAGTACTCCCTCCGTTCCATA 59.282 47.826 0.00 0.00 0.00 2.74
7410 11584 3.614568 AGTACTCCCTCCGTTCCATAT 57.385 47.619 0.00 0.00 0.00 1.78
7411 11585 3.924922 AGTACTCCCTCCGTTCCATATT 58.075 45.455 0.00 0.00 0.00 1.28
7412 11586 5.070823 AGTACTCCCTCCGTTCCATATTA 57.929 43.478 0.00 0.00 0.00 0.98
7413 11587 5.461327 AGTACTCCCTCCGTTCCATATTAA 58.539 41.667 0.00 0.00 0.00 1.40
7414 11588 6.082707 AGTACTCCCTCCGTTCCATATTAAT 58.917 40.000 0.00 0.00 0.00 1.40
7415 11589 5.906772 ACTCCCTCCGTTCCATATTAATT 57.093 39.130 0.00 0.00 0.00 1.40
7416 11590 5.621193 ACTCCCTCCGTTCCATATTAATTG 58.379 41.667 0.00 0.00 0.00 2.32
7417 11591 5.132144 ACTCCCTCCGTTCCATATTAATTGT 59.868 40.000 0.00 0.00 0.00 2.71
7418 11592 5.617252 TCCCTCCGTTCCATATTAATTGTC 58.383 41.667 0.00 0.00 0.00 3.18
7419 11593 4.451096 CCCTCCGTTCCATATTAATTGTCG 59.549 45.833 0.00 0.00 0.00 4.35
7420 11594 4.084013 CCTCCGTTCCATATTAATTGTCGC 60.084 45.833 0.00 0.00 0.00 5.19
7421 11595 4.699637 TCCGTTCCATATTAATTGTCGCT 58.300 39.130 0.00 0.00 0.00 4.93
7422 11596 4.748102 TCCGTTCCATATTAATTGTCGCTC 59.252 41.667 0.00 0.00 0.00 5.03
7423 11597 4.509970 CCGTTCCATATTAATTGTCGCTCA 59.490 41.667 0.00 0.00 0.00 4.26
7424 11598 5.007234 CCGTTCCATATTAATTGTCGCTCAA 59.993 40.000 0.00 0.00 40.53 3.02
7425 11599 6.457663 CCGTTCCATATTAATTGTCGCTCAAA 60.458 38.462 0.00 0.00 39.62 2.69
7426 11600 6.410914 CGTTCCATATTAATTGTCGCTCAAAC 59.589 38.462 0.00 0.00 39.62 2.93
7427 11601 6.043327 TCCATATTAATTGTCGCTCAAACG 57.957 37.500 0.00 0.00 39.62 3.60
7428 11602 5.007234 TCCATATTAATTGTCGCTCAAACGG 59.993 40.000 0.00 0.00 39.62 4.44
7429 11603 5.007234 CCATATTAATTGTCGCTCAAACGGA 59.993 40.000 0.00 0.00 39.62 4.69
7430 11604 6.293407 CCATATTAATTGTCGCTCAAACGGAT 60.293 38.462 0.00 0.00 39.62 4.18
7431 11605 2.900122 AATTGTCGCTCAAACGGATG 57.100 45.000 0.00 0.00 39.62 3.51
7432 11606 1.808411 ATTGTCGCTCAAACGGATGT 58.192 45.000 0.00 0.00 39.62 3.06
7433 11607 2.442212 TTGTCGCTCAAACGGATGTA 57.558 45.000 0.00 0.00 32.64 2.29
7434 11608 2.665649 TGTCGCTCAAACGGATGTAT 57.334 45.000 0.00 0.00 0.00 2.29
7435 11609 2.536365 TGTCGCTCAAACGGATGTATC 58.464 47.619 0.00 0.00 0.00 2.24
7436 11610 2.165641 TGTCGCTCAAACGGATGTATCT 59.834 45.455 0.00 0.00 0.00 1.98
7437 11611 3.379057 TGTCGCTCAAACGGATGTATCTA 59.621 43.478 0.00 0.00 0.00 1.98
7438 11612 3.975670 GTCGCTCAAACGGATGTATCTAG 59.024 47.826 0.00 0.00 0.00 2.43
7439 11613 3.630769 TCGCTCAAACGGATGTATCTAGT 59.369 43.478 0.00 0.00 0.00 2.57
7440 11614 4.818005 TCGCTCAAACGGATGTATCTAGTA 59.182 41.667 0.00 0.00 0.00 1.82
7441 11615 4.910456 CGCTCAAACGGATGTATCTAGTAC 59.090 45.833 0.00 0.00 0.00 2.73
7442 11616 5.277876 CGCTCAAACGGATGTATCTAGTACT 60.278 44.000 0.00 0.00 34.27 2.73
7443 11617 5.915758 GCTCAAACGGATGTATCTAGTACTG 59.084 44.000 5.39 0.00 34.27 2.74
7444 11618 6.238676 GCTCAAACGGATGTATCTAGTACTGA 60.239 42.308 5.39 1.42 34.27 3.41
7445 11619 7.634671 TCAAACGGATGTATCTAGTACTGAA 57.365 36.000 5.39 0.00 34.27 3.02
7446 11620 8.058667 TCAAACGGATGTATCTAGTACTGAAA 57.941 34.615 5.39 0.00 34.27 2.69
7447 11621 8.692710 TCAAACGGATGTATCTAGTACTGAAAT 58.307 33.333 5.39 0.00 34.27 2.17
7448 11622 9.961265 CAAACGGATGTATCTAGTACTGAAATA 57.039 33.333 5.39 0.00 34.27 1.40
7451 11625 9.298250 ACGGATGTATCTAGTACTGAAATATGT 57.702 33.333 5.39 0.00 34.27 2.29
7452 11626 9.776158 CGGATGTATCTAGTACTGAAATATGTC 57.224 37.037 5.39 3.73 34.27 3.06
7456 11630 9.862149 TGTATCTAGTACTGAAATATGTCTGGA 57.138 33.333 5.39 0.00 34.27 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 9.567776 TCCATGGACATTATAAAACGTATCATT 57.432 29.630 11.44 0.00 0.00 2.57
84 85 9.219603 CTCCATGGACATTATAAAACGTATCAT 57.780 33.333 11.44 0.00 0.00 2.45
85 86 8.208224 ACTCCATGGACATTATAAAACGTATCA 58.792 33.333 11.44 0.00 0.00 2.15
88 89 9.483916 CATACTCCATGGACATTATAAAACGTA 57.516 33.333 11.44 7.41 0.00 3.57
89 90 7.041372 GCATACTCCATGGACATTATAAAACGT 60.041 37.037 11.44 5.21 34.97 3.99
90 91 7.041440 TGCATACTCCATGGACATTATAAAACG 60.041 37.037 11.44 0.00 34.97 3.60
91 92 8.165239 TGCATACTCCATGGACATTATAAAAC 57.835 34.615 11.44 0.53 34.97 2.43
93 94 6.430925 GCTGCATACTCCATGGACATTATAAA 59.569 38.462 11.44 0.00 34.97 1.40
94 95 5.939883 GCTGCATACTCCATGGACATTATAA 59.060 40.000 11.44 0.17 34.97 0.98
95 96 5.249163 AGCTGCATACTCCATGGACATTATA 59.751 40.000 11.44 0.00 34.97 0.98
96 97 4.042560 AGCTGCATACTCCATGGACATTAT 59.957 41.667 11.44 5.19 34.97 1.28
97 98 3.392285 AGCTGCATACTCCATGGACATTA 59.608 43.478 11.44 2.77 34.97 1.90
98 99 2.174210 AGCTGCATACTCCATGGACATT 59.826 45.455 11.44 0.21 34.97 2.71
99 100 1.773052 AGCTGCATACTCCATGGACAT 59.227 47.619 11.44 4.16 34.97 3.06
100 101 1.134310 CAGCTGCATACTCCATGGACA 60.134 52.381 11.44 6.05 34.97 4.02
101 102 1.590932 CAGCTGCATACTCCATGGAC 58.409 55.000 11.44 0.63 34.97 4.02
102 103 0.179037 GCAGCTGCATACTCCATGGA 60.179 55.000 33.36 15.27 41.59 3.41
103 104 0.179026 AGCAGCTGCATACTCCATGG 60.179 55.000 38.24 4.97 45.16 3.66
104 105 1.227639 GAGCAGCTGCATACTCCATG 58.772 55.000 38.24 0.00 45.16 3.66
105 106 0.249784 CGAGCAGCTGCATACTCCAT 60.250 55.000 38.24 17.06 45.16 3.41
106 107 1.142531 CGAGCAGCTGCATACTCCA 59.857 57.895 38.24 0.00 45.16 3.86
107 108 2.243264 GCGAGCAGCTGCATACTCC 61.243 63.158 38.24 18.56 45.16 3.85
108 109 3.317847 GCGAGCAGCTGCATACTC 58.682 61.111 38.24 25.61 45.16 2.59
165 170 6.282199 ACCTCAAACGTATCATTAGTGAGT 57.718 37.500 0.00 0.00 37.87 3.41
191 196 4.378356 GCTGCAATCATGACACGAGTTTAA 60.378 41.667 0.00 0.00 0.00 1.52
313 318 9.676195 CCTTGCCGAAATTTAAATTTTGAAAAT 57.324 25.926 30.31 9.82 40.61 1.82
318 323 7.750014 CCAATCCTTGCCGAAATTTAAATTTTG 59.250 33.333 25.06 25.06 38.64 2.44
325 330 4.340617 AGACCAATCCTTGCCGAAATTTA 58.659 39.130 0.00 0.00 0.00 1.40
332 337 2.107950 TGTTAGACCAATCCTTGCCG 57.892 50.000 0.00 0.00 0.00 5.69
369 374 9.339850 TGTGAATCCAATGTTTTCAAATTCATT 57.660 25.926 0.00 0.00 34.47 2.57
370 375 8.905660 TGTGAATCCAATGTTTTCAAATTCAT 57.094 26.923 0.00 0.00 34.47 2.57
371 376 8.905660 ATGTGAATCCAATGTTTTCAAATTCA 57.094 26.923 0.00 0.00 31.66 2.57
385 390 9.541143 GGAAACTTCTTTTAAATGTGAATCCAA 57.459 29.630 1.46 0.00 0.00 3.53
386 391 8.700051 TGGAAACTTCTTTTAAATGTGAATCCA 58.300 29.630 11.61 11.61 0.00 3.41
387 392 9.541143 TTGGAAACTTCTTTTAAATGTGAATCC 57.459 29.630 1.46 5.94 0.00 3.01
390 395 9.323985 CCATTGGAAACTTCTTTTAAATGTGAA 57.676 29.630 0.00 1.19 33.38 3.18
391 396 8.482128 ACCATTGGAAACTTCTTTTAAATGTGA 58.518 29.630 10.37 0.00 33.38 3.58
392 397 8.550376 CACCATTGGAAACTTCTTTTAAATGTG 58.450 33.333 10.37 0.00 33.38 3.21
393 398 8.264347 ACACCATTGGAAACTTCTTTTAAATGT 58.736 29.630 10.37 0.00 33.38 2.71
394 399 8.661352 ACACCATTGGAAACTTCTTTTAAATG 57.339 30.769 10.37 0.00 34.21 2.32
399 404 9.679661 AAAATTACACCATTGGAAACTTCTTTT 57.320 25.926 10.37 4.03 0.00 2.27
400 405 9.679661 AAAAATTACACCATTGGAAACTTCTTT 57.320 25.926 10.37 0.00 0.00 2.52
431 436 1.473258 TTTCACCATGGGCTATGTGC 58.527 50.000 18.09 0.00 41.94 4.57
432 437 3.448301 ACAATTTCACCATGGGCTATGTG 59.552 43.478 18.09 9.70 34.87 3.21
433 438 3.711863 ACAATTTCACCATGGGCTATGT 58.288 40.909 18.09 10.21 34.87 2.29
434 439 4.081531 ACAACAATTTCACCATGGGCTATG 60.082 41.667 18.09 5.10 36.50 2.23
435 440 4.095946 ACAACAATTTCACCATGGGCTAT 58.904 39.130 18.09 0.74 0.00 2.97
436 441 3.505386 ACAACAATTTCACCATGGGCTA 58.495 40.909 18.09 0.00 0.00 3.93
437 442 2.328319 ACAACAATTTCACCATGGGCT 58.672 42.857 18.09 0.00 0.00 5.19
438 443 2.837532 ACAACAATTTCACCATGGGC 57.162 45.000 18.09 0.00 0.00 5.36
439 444 5.465056 GTGTTTACAACAATTTCACCATGGG 59.535 40.000 18.09 5.22 44.16 4.00
440 445 5.465056 GGTGTTTACAACAATTTCACCATGG 59.535 40.000 11.19 11.19 44.16 3.66
441 446 6.279882 AGGTGTTTACAACAATTTCACCATG 58.720 36.000 12.74 0.00 44.16 3.66
442 447 6.478512 AGGTGTTTACAACAATTTCACCAT 57.521 33.333 12.74 0.00 44.16 3.55
443 448 5.923733 AGGTGTTTACAACAATTTCACCA 57.076 34.783 12.74 0.00 44.16 4.17
444 449 7.034685 AGTAGGTGTTTACAACAATTTCACC 57.965 36.000 0.18 0.00 44.16 4.02
445 450 7.136772 GGAGTAGGTGTTTACAACAATTTCAC 58.863 38.462 0.18 0.00 44.16 3.18
446 451 6.263617 GGGAGTAGGTGTTTACAACAATTTCA 59.736 38.462 0.18 0.00 44.16 2.69
447 452 6.489022 AGGGAGTAGGTGTTTACAACAATTTC 59.511 38.462 0.18 0.00 44.16 2.17
448 453 6.370453 AGGGAGTAGGTGTTTACAACAATTT 58.630 36.000 0.18 0.00 44.16 1.82
449 454 5.948842 AGGGAGTAGGTGTTTACAACAATT 58.051 37.500 0.18 0.00 44.16 2.32
450 455 5.514310 GGAGGGAGTAGGTGTTTACAACAAT 60.514 44.000 0.18 0.00 44.16 2.71
451 456 4.202388 GGAGGGAGTAGGTGTTTACAACAA 60.202 45.833 0.18 0.00 44.16 2.83
452 457 3.325716 GGAGGGAGTAGGTGTTTACAACA 59.674 47.826 0.18 0.00 39.52 3.33
453 458 3.615834 CGGAGGGAGTAGGTGTTTACAAC 60.616 52.174 0.00 0.00 0.00 3.32
454 459 2.564062 CGGAGGGAGTAGGTGTTTACAA 59.436 50.000 0.00 0.00 0.00 2.41
455 460 2.173519 CGGAGGGAGTAGGTGTTTACA 58.826 52.381 0.00 0.00 0.00 2.41
456 461 2.174360 ACGGAGGGAGTAGGTGTTTAC 58.826 52.381 0.00 0.00 0.00 2.01
457 462 2.610438 ACGGAGGGAGTAGGTGTTTA 57.390 50.000 0.00 0.00 0.00 2.01
458 463 1.622312 GAACGGAGGGAGTAGGTGTTT 59.378 52.381 0.00 0.00 0.00 2.83
459 464 1.264295 GAACGGAGGGAGTAGGTGTT 58.736 55.000 0.00 0.00 0.00 3.32
460 465 0.964358 CGAACGGAGGGAGTAGGTGT 60.964 60.000 0.00 0.00 0.00 4.16
461 466 1.664321 CCGAACGGAGGGAGTAGGTG 61.664 65.000 7.53 0.00 37.50 4.00
462 467 1.379576 CCGAACGGAGGGAGTAGGT 60.380 63.158 7.53 0.00 37.50 3.08
463 468 1.077212 TCCGAACGGAGGGAGTAGG 60.077 63.158 12.04 0.00 39.76 3.18
464 469 4.651867 TCCGAACGGAGGGAGTAG 57.348 61.111 12.04 0.00 39.76 2.57
1187 2181 3.986006 GGTGCTGGGACGACGACA 61.986 66.667 0.00 0.00 0.00 4.35
2425 4071 4.032960 TGGTGCTAGGAATGACATTTGT 57.967 40.909 1.39 0.00 0.00 2.83
2975 5564 8.515695 AACATTCTTGATCTCTGCATATTCAA 57.484 30.769 0.00 0.00 0.00 2.69
3510 6099 3.063997 GTGTGAAGATTATTGGTCTGCGG 59.936 47.826 0.00 0.00 0.00 5.69
3544 6133 9.076781 TCCAACATTGTAAAGAGATTGAAATGA 57.923 29.630 0.00 0.00 33.11 2.57
4373 7231 5.712152 ACTATTTTCAGTTGCCTCTTTGG 57.288 39.130 0.00 0.00 39.35 3.28
4384 7242 7.067496 TCTTGTGGAGAGAACTATTTTCAGT 57.933 36.000 0.00 0.00 0.00 3.41
4638 7838 8.726988 GGCATTATTCAGTACAGAACAGTTTTA 58.273 33.333 2.45 0.00 0.00 1.52
4639 7839 7.309194 GGGCATTATTCAGTACAGAACAGTTTT 60.309 37.037 2.45 0.00 0.00 2.43
4640 7840 6.151144 GGGCATTATTCAGTACAGAACAGTTT 59.849 38.462 2.45 0.00 0.00 2.66
4641 7841 5.648092 GGGCATTATTCAGTACAGAACAGTT 59.352 40.000 2.45 0.00 0.00 3.16
4642 7842 5.186198 GGGCATTATTCAGTACAGAACAGT 58.814 41.667 2.45 0.00 0.00 3.55
4643 7843 5.185454 TGGGCATTATTCAGTACAGAACAG 58.815 41.667 2.45 0.00 0.00 3.16
4644 7844 5.172687 TGGGCATTATTCAGTACAGAACA 57.827 39.130 2.45 0.00 0.00 3.18
4645 7845 6.509418 TTTGGGCATTATTCAGTACAGAAC 57.491 37.500 2.45 0.00 0.00 3.01
4646 7846 7.178274 ACAATTTGGGCATTATTCAGTACAGAA 59.822 33.333 2.93 2.93 0.00 3.02
4647 7847 6.663093 ACAATTTGGGCATTATTCAGTACAGA 59.337 34.615 0.78 0.00 0.00 3.41
4648 7848 6.866480 ACAATTTGGGCATTATTCAGTACAG 58.134 36.000 0.78 0.00 0.00 2.74
4649 7849 6.849085 ACAATTTGGGCATTATTCAGTACA 57.151 33.333 0.78 0.00 0.00 2.90
4650 7850 7.767261 TGTACAATTTGGGCATTATTCAGTAC 58.233 34.615 0.00 0.00 0.00 2.73
4651 7851 7.946381 TGTACAATTTGGGCATTATTCAGTA 57.054 32.000 0.00 0.00 0.00 2.74
4652 7852 6.849085 TGTACAATTTGGGCATTATTCAGT 57.151 33.333 0.00 0.00 0.00 3.41
4653 7853 6.757947 CCTTGTACAATTTGGGCATTATTCAG 59.242 38.462 9.13 0.00 0.00 3.02
4654 7854 6.438741 TCCTTGTACAATTTGGGCATTATTCA 59.561 34.615 9.13 0.00 0.00 2.57
4655 7855 6.872920 TCCTTGTACAATTTGGGCATTATTC 58.127 36.000 9.13 0.00 0.00 1.75
5466 9557 3.715848 ATCCCCCGTCTTCCTCCCC 62.716 68.421 0.00 0.00 0.00 4.81
5467 9558 2.040779 ATCCCCCGTCTTCCTCCC 60.041 66.667 0.00 0.00 0.00 4.30
5468 9559 2.444256 CCATCCCCCGTCTTCCTCC 61.444 68.421 0.00 0.00 0.00 4.30
5469 9560 1.689582 ACCATCCCCCGTCTTCCTC 60.690 63.158 0.00 0.00 0.00 3.71
5470 9561 1.995626 CACCATCCCCCGTCTTCCT 60.996 63.158 0.00 0.00 0.00 3.36
5471 9562 2.590092 CACCATCCCCCGTCTTCC 59.410 66.667 0.00 0.00 0.00 3.46
5472 9563 2.590092 CCACCATCCCCCGTCTTC 59.410 66.667 0.00 0.00 0.00 2.87
5473 9564 3.728373 GCCACCATCCCCCGTCTT 61.728 66.667 0.00 0.00 0.00 3.01
5611 9715 2.029623 TCCCTCCGTTCGGATTTAGAG 58.970 52.381 14.34 2.06 33.34 2.43
5648 9752 3.328382 TTAACTTGATCCCACTGTCCG 57.672 47.619 0.00 0.00 0.00 4.79
5705 9809 9.045223 ACCACTTAAAAATTCAGAAATTTCAGC 57.955 29.630 19.99 0.00 42.82 4.26
5712 9816 8.287439 TCTGTCACCACTTAAAAATTCAGAAA 57.713 30.769 0.00 0.00 0.00 2.52
5752 9856 1.231068 GGGGGATGCCATGACATGT 59.769 57.895 14.26 0.00 0.00 3.21
5754 9858 0.638292 AAAGGGGGATGCCATGACAT 59.362 50.000 5.30 0.00 0.00 3.06
5785 9889 5.044476 AGGTCTCAGAGAGAGTTGGATTAGA 60.044 44.000 0.00 0.00 44.98 2.10
5853 9959 1.964223 GGTGTGAGTCTGAGGTCTCAA 59.036 52.381 9.09 0.68 41.41 3.02
5873 9983 4.834453 CCGCTGAGGCAGAGCTGG 62.834 72.222 0.00 5.55 38.60 4.85
5928 10038 0.250038 CTCCATGTATGTCGGGCAGG 60.250 60.000 0.00 0.00 0.00 4.85
5931 10041 1.609061 CCATCTCCATGTATGTCGGGC 60.609 57.143 0.00 0.00 0.00 6.13
5977 10089 0.971447 AGCCGGTGAAGTAGGAGGAC 60.971 60.000 1.90 0.00 0.00 3.85
6119 10231 2.046892 GCAGGCGCTCTTCCTCAA 60.047 61.111 7.64 0.00 34.30 3.02
6284 10399 1.554160 CACAAGGAGTCATCTGAGGCT 59.446 52.381 0.00 0.00 0.00 4.58
6303 10418 5.008613 CGACAAGGAAAATCAGAGGAAAACA 59.991 40.000 0.00 0.00 0.00 2.83
6304 10419 5.008712 ACGACAAGGAAAATCAGAGGAAAAC 59.991 40.000 0.00 0.00 0.00 2.43
6354 10469 4.728102 TCGCAACTACCGCCACCG 62.728 66.667 0.00 0.00 0.00 4.94
6441 10556 0.323816 ACTCGAGAGGGAGTCATGCA 60.324 55.000 21.68 0.00 43.63 3.96
6442 10557 2.499214 ACTCGAGAGGGAGTCATGC 58.501 57.895 21.68 0.00 43.63 4.06
6472 10587 2.027745 TCATCACAGGAAGACAAGGAGC 60.028 50.000 0.00 0.00 0.00 4.70
6499 10619 1.523934 GGTCACAATTCGTTCGTTCGT 59.476 47.619 2.67 0.00 0.00 3.85
6532 10656 2.513895 CCAGTCACCACCCGGTTT 59.486 61.111 0.00 0.00 46.31 3.27
6559 10685 1.072489 TGACGGCCAATTTGGTCACTA 59.928 47.619 19.55 2.28 43.88 2.74
6706 10839 5.393243 CCTTCCCTACCGATCGAATCTATTC 60.393 48.000 18.66 0.00 0.00 1.75
6719 10852 1.861982 TCTCTTTCCCTTCCCTACCG 58.138 55.000 0.00 0.00 0.00 4.02
6784 10917 6.256757 GCGTTCAGCTCACTTATCTCTAAAAT 59.743 38.462 0.00 0.00 44.04 1.82
6828 10964 2.634639 TTAGCTTGACTCCCCCAGTA 57.365 50.000 0.00 0.00 34.41 2.74
6937 11075 3.831911 TCCCCTTTTGTGAACATTCCATC 59.168 43.478 0.00 0.00 0.00 3.51
7069 11243 9.355215 CACAACGAACTACTCTAATAATCAACT 57.645 33.333 0.00 0.00 0.00 3.16
7073 11247 9.517609 ACATCACAACGAACTACTCTAATAATC 57.482 33.333 0.00 0.00 0.00 1.75
7074 11248 9.517609 GACATCACAACGAACTACTCTAATAAT 57.482 33.333 0.00 0.00 0.00 1.28
7075 11249 8.517056 TGACATCACAACGAACTACTCTAATAA 58.483 33.333 0.00 0.00 0.00 1.40
7077 11251 6.920817 TGACATCACAACGAACTACTCTAAT 58.079 36.000 0.00 0.00 0.00 1.73
7078 11252 6.321848 TGACATCACAACGAACTACTCTAA 57.678 37.500 0.00 0.00 0.00 2.10
7080 11254 4.321304 CCTGACATCACAACGAACTACTCT 60.321 45.833 0.00 0.00 0.00 3.24
7081 11255 3.921021 CCTGACATCACAACGAACTACTC 59.079 47.826 0.00 0.00 0.00 2.59
7082 11256 3.321111 ACCTGACATCACAACGAACTACT 59.679 43.478 0.00 0.00 0.00 2.57
7083 11257 3.650139 ACCTGACATCACAACGAACTAC 58.350 45.455 0.00 0.00 0.00 2.73
7112 11286 0.239347 GCACCTGTGTGATCACTTGC 59.761 55.000 25.55 19.83 45.76 4.01
7139 11313 2.586079 CGAGCCATCACGCGGATT 60.586 61.111 12.47 0.00 32.57 3.01
7146 11320 2.810650 CACTAGTTACCGAGCCATCAC 58.189 52.381 0.00 0.00 0.00 3.06
7180 11354 5.636121 TGACGAATGTAATCAAACGTTAGCT 59.364 36.000 0.00 0.00 38.56 3.32
7182 11356 6.948228 CACTGACGAATGTAATCAAACGTTAG 59.052 38.462 0.00 0.00 42.06 2.34
7273 11447 6.980051 ATGTACCAAAAATTACTCGACTCC 57.020 37.500 0.00 0.00 0.00 3.85
7284 11458 9.958234 GGCATAAAACAAAAATGTACCAAAAAT 57.042 25.926 0.00 0.00 0.00 1.82
7285 11459 8.406297 GGGCATAAAACAAAAATGTACCAAAAA 58.594 29.630 0.00 0.00 0.00 1.94
7286 11460 7.775561 AGGGCATAAAACAAAAATGTACCAAAA 59.224 29.630 0.00 0.00 0.00 2.44
7287 11461 7.283329 AGGGCATAAAACAAAAATGTACCAAA 58.717 30.769 0.00 0.00 0.00 3.28
7288 11462 6.831976 AGGGCATAAAACAAAAATGTACCAA 58.168 32.000 0.00 0.00 0.00 3.67
7289 11463 6.426646 AGGGCATAAAACAAAAATGTACCA 57.573 33.333 0.00 0.00 0.00 3.25
7290 11464 7.158697 AGAAGGGCATAAAACAAAAATGTACC 58.841 34.615 0.00 0.00 0.00 3.34
7291 11465 9.353999 CTAGAAGGGCATAAAACAAAAATGTAC 57.646 33.333 0.00 0.00 0.00 2.90
7292 11466 9.084533 ACTAGAAGGGCATAAAACAAAAATGTA 57.915 29.630 0.00 0.00 0.00 2.29
7293 11467 7.962441 ACTAGAAGGGCATAAAACAAAAATGT 58.038 30.769 0.00 0.00 0.00 2.71
7294 11468 8.831715 AACTAGAAGGGCATAAAACAAAAATG 57.168 30.769 0.00 0.00 0.00 2.32
7295 11469 9.845740 AAAACTAGAAGGGCATAAAACAAAAAT 57.154 25.926 0.00 0.00 0.00 1.82
7296 11470 9.320352 GAAAACTAGAAGGGCATAAAACAAAAA 57.680 29.630 0.00 0.00 0.00 1.94
7301 11475 7.084486 CACTGAAAACTAGAAGGGCATAAAAC 58.916 38.462 0.00 0.00 0.00 2.43
7302 11476 6.208599 CCACTGAAAACTAGAAGGGCATAAAA 59.791 38.462 0.00 0.00 0.00 1.52
7306 11480 3.562176 CCCACTGAAAACTAGAAGGGCAT 60.562 47.826 0.00 0.00 31.21 4.40
7313 11487 3.578716 CTCAGACCCCACTGAAAACTAGA 59.421 47.826 0.00 0.00 44.62 2.43
7322 11496 2.088104 TATAGGCTCAGACCCCACTG 57.912 55.000 0.00 0.00 39.02 3.66
7327 11501 4.891992 TTGCTATTATAGGCTCAGACCC 57.108 45.455 1.12 0.00 0.00 4.46
7344 11518 7.337942 CCTCCTTGACTCTGTTAAAATATTGCT 59.662 37.037 0.00 0.00 0.00 3.91
7345 11519 7.336931 TCCTCCTTGACTCTGTTAAAATATTGC 59.663 37.037 0.00 0.00 0.00 3.56
7362 11536 2.632512 GGCAAAACCAATTCCTCCTTGA 59.367 45.455 0.00 0.00 38.86 3.02
7367 11541 3.324846 AGAAAGGGCAAAACCAATTCCTC 59.675 43.478 0.00 0.00 42.05 3.71
7368 11542 3.317406 AGAAAGGGCAAAACCAATTCCT 58.683 40.909 0.00 0.00 42.05 3.36
7370 11544 5.468540 ACTAGAAAGGGCAAAACCAATTC 57.531 39.130 0.00 0.00 42.05 2.17
7372 11546 5.641155 AGTACTAGAAAGGGCAAAACCAAT 58.359 37.500 0.00 0.00 42.05 3.16
7374 11548 4.506095 GGAGTACTAGAAAGGGCAAAACCA 60.506 45.833 0.00 0.00 42.05 3.67
7375 11549 4.008330 GGAGTACTAGAAAGGGCAAAACC 58.992 47.826 0.00 0.00 37.93 3.27
7381 11555 2.040939 GGAGGGAGTACTAGAAAGGGC 58.959 57.143 0.00 0.00 0.00 5.19
7391 11565 5.796424 TTAATATGGAACGGAGGGAGTAC 57.204 43.478 0.00 0.00 0.00 2.73
7392 11566 6.328148 ACAATTAATATGGAACGGAGGGAGTA 59.672 38.462 0.00 0.00 0.00 2.59
7393 11567 5.132144 ACAATTAATATGGAACGGAGGGAGT 59.868 40.000 0.00 0.00 0.00 3.85
7394 11568 5.621193 ACAATTAATATGGAACGGAGGGAG 58.379 41.667 0.00 0.00 0.00 4.30
7395 11569 5.617252 GACAATTAATATGGAACGGAGGGA 58.383 41.667 0.00 0.00 0.00 4.20
7396 11570 4.451096 CGACAATTAATATGGAACGGAGGG 59.549 45.833 0.00 0.00 0.00 4.30
7397 11571 4.084013 GCGACAATTAATATGGAACGGAGG 60.084 45.833 0.00 0.00 0.00 4.30
7398 11572 4.750098 AGCGACAATTAATATGGAACGGAG 59.250 41.667 0.00 0.00 0.00 4.63
7399 11573 4.699637 AGCGACAATTAATATGGAACGGA 58.300 39.130 0.00 0.00 0.00 4.69
7400 11574 4.509970 TGAGCGACAATTAATATGGAACGG 59.490 41.667 0.00 0.00 0.00 4.44
7401 11575 5.651172 TGAGCGACAATTAATATGGAACG 57.349 39.130 0.00 0.00 0.00 3.95
7402 11576 6.410914 CGTTTGAGCGACAATTAATATGGAAC 59.589 38.462 0.00 0.00 38.36 3.62
7403 11577 6.457663 CCGTTTGAGCGACAATTAATATGGAA 60.458 38.462 0.00 0.00 38.36 3.53
7404 11578 5.007234 CCGTTTGAGCGACAATTAATATGGA 59.993 40.000 0.00 0.00 38.36 3.41
7405 11579 5.007234 TCCGTTTGAGCGACAATTAATATGG 59.993 40.000 0.00 1.72 38.36 2.74
7406 11580 6.043327 TCCGTTTGAGCGACAATTAATATG 57.957 37.500 0.00 0.00 38.36 1.78
7407 11581 6.260050 ACATCCGTTTGAGCGACAATTAATAT 59.740 34.615 0.00 0.00 38.36 1.28
7408 11582 5.583061 ACATCCGTTTGAGCGACAATTAATA 59.417 36.000 0.00 0.00 38.36 0.98
7409 11583 4.394920 ACATCCGTTTGAGCGACAATTAAT 59.605 37.500 0.00 0.00 38.36 1.40
7410 11584 3.749088 ACATCCGTTTGAGCGACAATTAA 59.251 39.130 0.00 0.00 38.36 1.40
7411 11585 3.331150 ACATCCGTTTGAGCGACAATTA 58.669 40.909 0.00 0.00 38.36 1.40
7412 11586 2.151202 ACATCCGTTTGAGCGACAATT 58.849 42.857 0.00 0.00 38.36 2.32
7413 11587 1.808411 ACATCCGTTTGAGCGACAAT 58.192 45.000 0.00 0.00 38.36 2.71
7414 11588 2.442212 TACATCCGTTTGAGCGACAA 57.558 45.000 0.00 0.00 36.65 3.18
7415 11589 2.165641 AGATACATCCGTTTGAGCGACA 59.834 45.455 0.00 0.00 0.00 4.35
7416 11590 2.810650 AGATACATCCGTTTGAGCGAC 58.189 47.619 0.00 0.00 0.00 5.19
7417 11591 3.630769 ACTAGATACATCCGTTTGAGCGA 59.369 43.478 0.00 0.00 0.00 4.93
7418 11592 3.966154 ACTAGATACATCCGTTTGAGCG 58.034 45.455 0.00 0.00 0.00 5.03
7419 11593 5.915758 CAGTACTAGATACATCCGTTTGAGC 59.084 44.000 0.00 0.00 36.09 4.26
7420 11594 7.260558 TCAGTACTAGATACATCCGTTTGAG 57.739 40.000 0.00 0.00 36.09 3.02
7421 11595 7.634671 TTCAGTACTAGATACATCCGTTTGA 57.365 36.000 0.00 0.00 36.09 2.69
7422 11596 8.873215 ATTTCAGTACTAGATACATCCGTTTG 57.127 34.615 0.00 0.00 36.09 2.93
7425 11599 9.298250 ACATATTTCAGTACTAGATACATCCGT 57.702 33.333 0.00 0.00 36.09 4.69
7426 11600 9.776158 GACATATTTCAGTACTAGATACATCCG 57.224 37.037 0.00 0.00 36.09 4.18
7430 11604 9.862149 TCCAGACATATTTCAGTACTAGATACA 57.138 33.333 0.00 0.00 36.09 2.29
7434 11608 9.862149 TGTATCCAGACATATTTCAGTACTAGA 57.138 33.333 0.00 0.00 0.00 2.43
7437 11611 8.589338 GGATGTATCCAGACATATTTCAGTACT 58.411 37.037 6.03 0.00 46.38 2.73
7438 11612 8.764524 GGATGTATCCAGACATATTTCAGTAC 57.235 38.462 6.03 0.00 46.38 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.