Multiple sequence alignment - TraesCS1D01G338900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G338900 chr1D 100.000 4314 0 0 1 4314 427943057 427938744 0.000000e+00 7967
1 TraesCS1D01G338900 chr1D 99.598 1741 6 1 504 2244 427911924 427913663 0.000000e+00 3175
2 TraesCS1D01G338900 chr1D 97.576 495 11 1 1 495 427911447 427911940 0.000000e+00 846
3 TraesCS1D01G338900 chr1D 93.000 300 20 1 2239 2538 427913933 427914231 1.840000e-118 436
4 TraesCS1D01G338900 chr1D 94.158 291 4 3 3587 3864 427939309 427939019 8.570000e-117 431
5 TraesCS1D01G338900 chr1D 94.158 291 4 3 3749 4039 427939471 427939194 8.570000e-117 431
6 TraesCS1D01G338900 chr1D 92.771 83 6 0 4072 4154 427938923 427938841 2.110000e-23 121
7 TraesCS1D01G338900 chr1D 92.771 83 6 0 4135 4217 427938986 427938904 2.110000e-23 121
8 TraesCS1D01G338900 chr1D 85.345 116 4 3 3587 3689 427939134 427939019 1.640000e-19 108
9 TraesCS1D01G338900 chr1D 85.345 116 4 3 3924 4039 427939471 427939369 1.640000e-19 108
10 TraesCS1D01G338900 chr1A 97.741 1328 21 3 2537 3864 584888615 584889933 0.000000e+00 2278
11 TraesCS1D01G338900 chr1A 96.757 740 23 1 1801 2540 584887845 584888583 0.000000e+00 1232
12 TraesCS1D01G338900 chr1A 94.885 567 13 5 3749 4314 584889656 584890207 0.000000e+00 872
13 TraesCS1D01G338900 chr1A 86.613 747 26 28 673 1402 584944921 584944232 0.000000e+00 758
14 TraesCS1D01G338900 chr1A 95.787 451 18 1 1801 2251 584944226 584943777 0.000000e+00 726
15 TraesCS1D01G338900 chr1A 93.210 486 30 3 5 490 584885742 584886224 0.000000e+00 712
16 TraesCS1D01G338900 chr1A 93.210 486 30 3 5 490 584946190 584945708 0.000000e+00 712
17 TraesCS1D01G338900 chr1A 95.710 303 13 0 2238 2540 584943759 584943457 5.010000e-134 488
18 TraesCS1D01G338900 chr1A 88.473 347 9 12 1062 1402 584887518 584887839 1.450000e-104 390
19 TraesCS1D01G338900 chr1A 97.115 104 2 1 522 624 584886222 584886325 1.590000e-39 174
20 TraesCS1D01G338900 chr1A 97.115 104 2 1 522 624 584945710 584945607 1.590000e-39 174
21 TraesCS1D01G338900 chr1A 92.771 83 6 0 4072 4154 584890030 584890112 2.110000e-23 121
22 TraesCS1D01G338900 chr1A 85.039 127 7 1 5 131 584885535 584885649 7.580000e-23 119
23 TraesCS1D01G338900 chr1A 83.077 130 10 1 5 134 584946397 584946280 1.640000e-19 108
24 TraesCS1D01G338900 chr1A 84.483 116 5 3 3924 4039 584889656 584889758 7.630000e-18 102
25 TraesCS1D01G338900 chr7B 82.022 178 19 9 288 457 717167926 717168098 5.820000e-29 139
26 TraesCS1D01G338900 chr7B 80.899 178 21 9 288 457 717243671 717243843 1.260000e-25 128
27 TraesCS1D01G338900 chr2B 82.803 157 18 5 300 454 556216962 556217111 9.730000e-27 132
28 TraesCS1D01G338900 chr3D 81.250 176 19 12 298 464 302228234 302228064 3.500000e-26 130
29 TraesCS1D01G338900 chr7D 82.581 155 13 7 314 460 438377148 438377000 1.630000e-24 124
30 TraesCS1D01G338900 chr7A 80.473 169 19 8 298 458 8325500 8325338 2.730000e-22 117
31 TraesCS1D01G338900 chr5A 79.191 173 25 8 27 190 356134142 356134312 4.560000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G338900 chr1D 427938744 427943057 4313 True 7967.000000 7967 100.000000 1 4314 1 chr1D.!!$R1 4313
1 TraesCS1D01G338900 chr1D 427911447 427914231 2784 False 1485.666667 3175 96.724667 1 2538 3 chr1D.!!$F1 2537
2 TraesCS1D01G338900 chr1D 427938841 427939471 630 True 220.000000 431 90.758000 3587 4217 6 chr1D.!!$R2 630
3 TraesCS1D01G338900 chr1A 584885535 584890207 4672 False 666.666667 2278 92.274889 5 4314 9 chr1A.!!$F1 4309
4 TraesCS1D01G338900 chr1A 584943457 584946397 2940 True 494.333333 758 91.918667 5 2540 6 chr1A.!!$R1 2535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 224 0.247736 GTCTTGGACTCACCTGCGAT 59.752 55.000 0.00 0.00 39.86 4.58 F
2026 2992 1.279496 CACAATGTCCTCCTCCTCCA 58.721 55.000 0.00 0.00 0.00 3.86 F
3100 4406 1.062206 GAGTAGTCCCGTTCGAGCG 59.938 63.158 15.26 15.26 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 3178 3.818773 AGTGGTTTACATGTTGTAGCACC 59.181 43.478 22.33 13.35 37.80 5.01 R
3211 4517 0.235665 AAAGCAACACGCAGATGACG 59.764 50.000 0.00 0.00 46.13 4.35 R
3955 5436 4.576053 CAGTTGAAACATTCAGACTGACCA 59.424 41.667 19.33 0.00 43.48 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 224 0.247736 GTCTTGGACTCACCTGCGAT 59.752 55.000 0.00 0.00 39.86 4.58
144 348 2.244117 GAGGAAGGACGCTGGCATCA 62.244 60.000 0.00 0.00 0.00 3.07
261 465 1.880819 TAAGGAGGGGAACGACACGC 61.881 60.000 0.00 0.00 0.00 5.34
491 695 9.569167 GGTTAAACTTCTCAAATAATAAGTGCC 57.431 33.333 0.00 0.00 32.69 5.01
494 698 7.759489 AACTTCTCAAATAATAAGTGCCACA 57.241 32.000 0.00 0.00 32.69 4.17
495 699 7.759489 ACTTCTCAAATAATAAGTGCCACAA 57.241 32.000 0.00 0.00 31.20 3.33
496 700 7.820648 ACTTCTCAAATAATAAGTGCCACAAG 58.179 34.615 0.00 0.00 31.20 3.16
497 701 7.448469 ACTTCTCAAATAATAAGTGCCACAAGT 59.552 33.333 0.00 0.00 31.20 3.16
498 702 7.759489 TCTCAAATAATAAGTGCCACAAGTT 57.241 32.000 0.00 0.00 0.00 2.66
499 703 8.177119 TCTCAAATAATAAGTGCCACAAGTTT 57.823 30.769 0.00 0.00 0.00 2.66
500 704 8.296713 TCTCAAATAATAAGTGCCACAAGTTTC 58.703 33.333 0.00 0.00 0.00 2.78
501 705 7.946207 TCAAATAATAAGTGCCACAAGTTTCA 58.054 30.769 0.00 0.00 0.00 2.69
502 706 8.417106 TCAAATAATAAGTGCCACAAGTTTCAA 58.583 29.630 0.00 0.00 0.00 2.69
503 707 9.039870 CAAATAATAAGTGCCACAAGTTTCAAA 57.960 29.630 0.00 0.00 0.00 2.69
504 708 9.606631 AAATAATAAGTGCCACAAGTTTCAAAA 57.393 25.926 0.00 0.00 0.00 2.44
505 709 9.606631 AATAATAAGTGCCACAAGTTTCAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
2026 2992 1.279496 CACAATGTCCTCCTCCTCCA 58.721 55.000 0.00 0.00 0.00 3.86
2251 3523 5.683876 ACCACTACTAACATGCTTGATCT 57.316 39.130 6.60 0.00 0.00 2.75
2287 3559 2.076863 CGCCGAACCTCTTTCATCTTT 58.923 47.619 0.00 0.00 33.24 2.52
2293 3565 5.703130 CCGAACCTCTTTCATCTTTTCTTCT 59.297 40.000 0.00 0.00 33.24 2.85
2298 3570 6.266330 ACCTCTTTCATCTTTTCTTCTTTGGG 59.734 38.462 0.00 0.00 0.00 4.12
2555 3861 4.134563 GGCCCGTTATCATGTAAATCACT 58.865 43.478 0.00 0.00 0.00 3.41
2612 3918 9.378551 TCTTTTAGCTTATGTCGTATTGATTGT 57.621 29.630 0.00 0.00 0.00 2.71
2652 3958 7.043961 TGAACTGTGTTAGATAGATGCCTAG 57.956 40.000 0.00 0.00 0.00 3.02
2692 3998 1.316651 TGTGTGCAGTGCATTGCTTA 58.683 45.000 30.80 18.64 44.38 3.09
3100 4406 1.062206 GAGTAGTCCCGTTCGAGCG 59.938 63.158 15.26 15.26 0.00 5.03
3133 4439 2.668457 GGCGCTTATCCGATACATGAAG 59.332 50.000 7.64 0.00 0.00 3.02
3184 4490 4.966965 ATCTCTCAAGATACGTGTCGTT 57.033 40.909 6.66 0.00 40.57 3.85
3210 4516 2.135139 GCTGGGCAAGTTAAACTTTGC 58.865 47.619 10.52 10.52 36.03 3.68
3211 4517 2.754472 CTGGGCAAGTTAAACTTTGCC 58.246 47.619 22.24 22.24 44.34 4.52
3339 4645 2.033065 GCAGAGAATGCGACTATTGCAG 60.033 50.000 0.00 0.00 46.99 4.41
3363 4669 6.881065 AGCAATGTAATAGTGATGTTGTGACT 59.119 34.615 0.00 0.00 0.00 3.41
3364 4670 8.040727 AGCAATGTAATAGTGATGTTGTGACTA 58.959 33.333 0.00 0.00 30.95 2.59
3365 4671 8.664798 GCAATGTAATAGTGATGTTGTGACTAA 58.335 33.333 0.00 0.00 30.17 2.24
3457 4763 6.584563 CCCGTAAATTTTCTGTTGGTGTTATG 59.415 38.462 0.00 0.00 0.00 1.90
3861 5342 7.062906 CTGAAAGTTCTGATCACTCTGAATG 57.937 40.000 0.00 0.00 40.22 2.67
3862 5343 6.528321 TGAAAGTTCTGATCACTCTGAATGT 58.472 36.000 0.00 0.00 40.22 2.71
3863 5344 6.994496 TGAAAGTTCTGATCACTCTGAATGTT 59.006 34.615 0.00 0.00 40.22 2.71
3864 5345 6.798315 AAGTTCTGATCACTCTGAATGTTG 57.202 37.500 0.00 0.00 40.22 3.33
3865 5346 6.106648 AGTTCTGATCACTCTGAATGTTGA 57.893 37.500 0.00 0.00 40.22 3.18
3866 5347 6.528321 AGTTCTGATCACTCTGAATGTTGAA 58.472 36.000 0.00 0.00 40.22 2.69
3867 5348 7.166851 AGTTCTGATCACTCTGAATGTTGAAT 58.833 34.615 0.00 0.00 40.22 2.57
3868 5349 7.664731 AGTTCTGATCACTCTGAATGTTGAATT 59.335 33.333 0.00 0.00 40.22 2.17
3869 5350 8.939929 GTTCTGATCACTCTGAATGTTGAATTA 58.060 33.333 0.00 0.00 40.22 1.40
3870 5351 8.484641 TCTGATCACTCTGAATGTTGAATTAC 57.515 34.615 0.00 0.00 0.00 1.89
3871 5352 8.096414 TCTGATCACTCTGAATGTTGAATTACA 58.904 33.333 0.00 0.00 0.00 2.41
3872 5353 8.260270 TGATCACTCTGAATGTTGAATTACAG 57.740 34.615 0.00 0.00 0.00 2.74
3873 5354 8.096414 TGATCACTCTGAATGTTGAATTACAGA 58.904 33.333 0.00 0.00 34.13 3.41
3874 5355 7.658179 TCACTCTGAATGTTGAATTACAGAC 57.342 36.000 0.00 0.00 32.31 3.51
3875 5356 7.216494 TCACTCTGAATGTTGAATTACAGACA 58.784 34.615 0.00 0.00 32.31 3.41
3876 5357 7.879677 TCACTCTGAATGTTGAATTACAGACAT 59.120 33.333 0.00 0.00 34.40 3.06
3877 5358 8.509690 CACTCTGAATGTTGAATTACAGACATT 58.490 33.333 0.66 0.66 39.88 2.71
3878 5359 8.509690 ACTCTGAATGTTGAATTACAGACATTG 58.490 33.333 5.41 0.00 38.71 2.82
3879 5360 8.620116 TCTGAATGTTGAATTACAGACATTGA 57.380 30.769 5.41 0.00 38.71 2.57
3880 5361 8.506437 TCTGAATGTTGAATTACAGACATTGAC 58.494 33.333 5.41 0.00 38.71 3.18
3881 5362 8.164058 TGAATGTTGAATTACAGACATTGACA 57.836 30.769 5.41 0.00 38.71 3.58
3882 5363 8.291740 TGAATGTTGAATTACAGACATTGACAG 58.708 33.333 5.41 0.00 38.71 3.51
3883 5364 7.984422 ATGTTGAATTACAGACATTGACAGA 57.016 32.000 0.00 0.00 31.50 3.41
3884 5365 7.425577 TGTTGAATTACAGACATTGACAGAG 57.574 36.000 0.00 0.00 0.00 3.35
3885 5366 6.992123 TGTTGAATTACAGACATTGACAGAGT 59.008 34.615 0.00 0.00 0.00 3.24
3886 5367 7.498900 TGTTGAATTACAGACATTGACAGAGTT 59.501 33.333 0.00 0.00 0.00 3.01
3887 5368 7.658179 TGAATTACAGACATTGACAGAGTTC 57.342 36.000 0.00 0.00 0.00 3.01
3888 5369 7.445121 TGAATTACAGACATTGACAGAGTTCT 58.555 34.615 0.00 0.00 0.00 3.01
3890 5371 4.944619 ACAGACATTGACAGAGTTCTGA 57.055 40.909 15.63 0.00 46.59 3.27
3891 5372 5.282055 ACAGACATTGACAGAGTTCTGAA 57.718 39.130 15.63 1.36 46.59 3.02
3892 5373 5.295950 ACAGACATTGACAGAGTTCTGAAG 58.704 41.667 15.63 3.60 46.59 3.02
3893 5374 4.689812 CAGACATTGACAGAGTTCTGAAGG 59.310 45.833 15.63 5.16 46.59 3.46
3894 5375 4.346418 AGACATTGACAGAGTTCTGAAGGT 59.654 41.667 15.63 8.10 46.59 3.50
3895 5376 5.041191 ACATTGACAGAGTTCTGAAGGTT 57.959 39.130 15.63 0.00 46.59 3.50
3896 5377 4.818546 ACATTGACAGAGTTCTGAAGGTTG 59.181 41.667 15.63 8.57 46.59 3.77
3897 5378 4.753516 TTGACAGAGTTCTGAAGGTTGA 57.246 40.909 15.63 0.00 46.59 3.18
3898 5379 4.327982 TGACAGAGTTCTGAAGGTTGAG 57.672 45.455 15.63 0.00 46.59 3.02
3899 5380 3.960755 TGACAGAGTTCTGAAGGTTGAGA 59.039 43.478 15.63 0.00 46.59 3.27
3900 5381 4.590647 TGACAGAGTTCTGAAGGTTGAGAT 59.409 41.667 15.63 0.00 46.59 2.75
3901 5382 5.070981 TGACAGAGTTCTGAAGGTTGAGATT 59.929 40.000 15.63 0.00 46.59 2.40
3902 5383 5.934781 ACAGAGTTCTGAAGGTTGAGATTT 58.065 37.500 15.63 0.00 46.59 2.17
3903 5384 6.360618 ACAGAGTTCTGAAGGTTGAGATTTT 58.639 36.000 15.63 0.00 46.59 1.82
3904 5385 6.484977 ACAGAGTTCTGAAGGTTGAGATTTTC 59.515 38.462 15.63 0.00 46.59 2.29
3905 5386 6.709846 CAGAGTTCTGAAGGTTGAGATTTTCT 59.290 38.462 2.97 0.00 46.59 2.52
3906 5387 6.709846 AGAGTTCTGAAGGTTGAGATTTTCTG 59.290 38.462 0.00 0.00 0.00 3.02
3907 5388 6.360618 AGTTCTGAAGGTTGAGATTTTCTGT 58.639 36.000 0.00 0.00 0.00 3.41
3908 5389 7.509546 AGTTCTGAAGGTTGAGATTTTCTGTA 58.490 34.615 0.00 0.00 0.00 2.74
3909 5390 8.160106 AGTTCTGAAGGTTGAGATTTTCTGTAT 58.840 33.333 0.00 0.00 0.00 2.29
3910 5391 8.447053 GTTCTGAAGGTTGAGATTTTCTGTATC 58.553 37.037 0.00 0.00 0.00 2.24
3911 5392 7.911651 TCTGAAGGTTGAGATTTTCTGTATCT 58.088 34.615 0.00 0.00 35.12 1.98
3912 5393 9.035890 TCTGAAGGTTGAGATTTTCTGTATCTA 57.964 33.333 0.00 0.00 32.64 1.98
3913 5394 9.829507 CTGAAGGTTGAGATTTTCTGTATCTAT 57.170 33.333 0.00 0.00 32.64 1.98
3942 5423 9.607988 TTAGAGTGAAATTTACTGACAAGTTGA 57.392 29.630 10.54 0.00 37.88 3.18
3943 5424 8.506168 AGAGTGAAATTTACTGACAAGTTGAA 57.494 30.769 10.54 0.00 37.88 2.69
3944 5425 9.125026 AGAGTGAAATTTACTGACAAGTTGAAT 57.875 29.630 10.54 0.00 37.88 2.57
3945 5426 9.173939 GAGTGAAATTTACTGACAAGTTGAATG 57.826 33.333 10.54 1.27 37.88 2.67
3946 5427 8.686334 AGTGAAATTTACTGACAAGTTGAATGT 58.314 29.630 10.54 7.18 37.88 2.71
3947 5428 9.301153 GTGAAATTTACTGACAAGTTGAATGTT 57.699 29.630 10.54 0.00 37.88 2.71
3948 5429 9.299963 TGAAATTTACTGACAAGTTGAATGTTG 57.700 29.630 10.54 0.00 37.88 3.33
3949 5430 9.515020 GAAATTTACTGACAAGTTGAATGTTGA 57.485 29.630 10.54 0.00 37.88 3.18
3950 5431 9.868277 AAATTTACTGACAAGTTGAATGTTGAA 57.132 25.926 10.54 4.49 37.88 2.69
3951 5432 9.868277 AATTTACTGACAAGTTGAATGTTGAAA 57.132 25.926 10.54 4.19 37.88 2.69
3953 5434 9.868277 TTTACTGACAAGTTGAATGTTGAAATT 57.132 25.926 10.54 0.00 37.88 1.82
3954 5435 9.868277 TTACTGACAAGTTGAATGTTGAAATTT 57.132 25.926 10.54 0.00 37.88 1.82
3955 5436 8.776376 ACTGACAAGTTGAATGTTGAAATTTT 57.224 26.923 10.54 0.00 30.14 1.82
3956 5437 8.658609 ACTGACAAGTTGAATGTTGAAATTTTG 58.341 29.630 10.54 0.00 30.14 2.44
3957 5438 7.972527 TGACAAGTTGAATGTTGAAATTTTGG 58.027 30.769 10.54 0.00 0.00 3.28
3958 5439 7.605691 TGACAAGTTGAATGTTGAAATTTTGGT 59.394 29.630 10.54 0.00 0.00 3.67
3959 5440 7.973601 ACAAGTTGAATGTTGAAATTTTGGTC 58.026 30.769 10.54 0.00 0.00 4.02
3960 5441 7.605691 ACAAGTTGAATGTTGAAATTTTGGTCA 59.394 29.630 10.54 0.00 0.00 4.02
3961 5442 7.775397 AGTTGAATGTTGAAATTTTGGTCAG 57.225 32.000 0.00 0.00 0.00 3.51
3962 5443 7.330262 AGTTGAATGTTGAAATTTTGGTCAGT 58.670 30.769 0.00 0.00 0.00 3.41
3963 5444 7.492344 AGTTGAATGTTGAAATTTTGGTCAGTC 59.508 33.333 0.00 0.50 0.00 3.51
3964 5445 7.111247 TGAATGTTGAAATTTTGGTCAGTCT 57.889 32.000 0.00 0.00 0.00 3.24
3965 5446 6.979817 TGAATGTTGAAATTTTGGTCAGTCTG 59.020 34.615 0.00 0.00 0.00 3.51
3966 5447 6.713762 ATGTTGAAATTTTGGTCAGTCTGA 57.286 33.333 0.00 0.00 0.00 3.27
3967 5448 6.522625 TGTTGAAATTTTGGTCAGTCTGAA 57.477 33.333 3.51 0.00 0.00 3.02
3968 5449 7.111247 TGTTGAAATTTTGGTCAGTCTGAAT 57.889 32.000 3.51 0.00 0.00 2.57
3969 5450 6.979817 TGTTGAAATTTTGGTCAGTCTGAATG 59.020 34.615 3.51 0.00 0.00 2.67
3970 5451 6.713762 TGAAATTTTGGTCAGTCTGAATGT 57.286 33.333 3.51 0.00 0.00 2.71
3971 5452 7.111247 TGAAATTTTGGTCAGTCTGAATGTT 57.889 32.000 3.51 0.00 0.00 2.71
3972 5453 7.555087 TGAAATTTTGGTCAGTCTGAATGTTT 58.445 30.769 3.51 1.07 0.00 2.83
3973 5454 7.706179 TGAAATTTTGGTCAGTCTGAATGTTTC 59.294 33.333 3.51 9.81 0.00 2.78
3974 5455 6.713762 ATTTTGGTCAGTCTGAATGTTTCA 57.286 33.333 3.51 0.24 38.17 2.69
3975 5456 6.522625 TTTTGGTCAGTCTGAATGTTTCAA 57.477 33.333 3.51 5.89 39.58 2.69
3976 5457 5.499139 TTGGTCAGTCTGAATGTTTCAAC 57.501 39.130 3.51 0.00 39.58 3.18
3977 5458 4.780815 TGGTCAGTCTGAATGTTTCAACT 58.219 39.130 3.51 0.00 39.58 3.16
3978 5459 4.576053 TGGTCAGTCTGAATGTTTCAACTG 59.424 41.667 3.51 17.20 42.91 3.16
3979 5460 4.816385 GGTCAGTCTGAATGTTTCAACTGA 59.184 41.667 19.56 19.56 45.02 3.41
3980 5461 5.296780 GGTCAGTCTGAATGTTTCAACTGAA 59.703 40.000 22.24 12.76 46.50 3.02
3981 5462 6.016777 GGTCAGTCTGAATGTTTCAACTGAAT 60.017 38.462 22.24 5.20 46.50 2.57
3982 5463 6.854892 GTCAGTCTGAATGTTTCAACTGAATG 59.145 38.462 22.24 13.34 46.50 2.67
3983 5464 6.543465 TCAGTCTGAATGTTTCAACTGAATGT 59.457 34.615 20.35 0.00 44.69 2.71
3984 5465 7.067372 TCAGTCTGAATGTTTCAACTGAATGTT 59.933 33.333 20.35 0.00 44.69 2.71
3985 5466 7.703621 CAGTCTGAATGTTTCAACTGAATGTTT 59.296 33.333 17.82 0.00 43.48 2.83
3986 5467 8.902806 AGTCTGAATGTTTCAACTGAATGTTTA 58.097 29.630 0.00 0.00 39.58 2.01
3987 5468 9.173939 GTCTGAATGTTTCAACTGAATGTTTAG 57.826 33.333 0.00 0.00 39.58 1.85
3988 5469 9.119418 TCTGAATGTTTCAACTGAATGTTTAGA 57.881 29.630 0.00 0.00 39.58 2.10
3989 5470 9.390795 CTGAATGTTTCAACTGAATGTTTAGAG 57.609 33.333 0.00 0.00 39.58 2.43
3990 5471 8.902806 TGAATGTTTCAACTGAATGTTTAGAGT 58.097 29.630 0.00 0.00 36.63 3.24
3991 5472 9.173939 GAATGTTTCAACTGAATGTTTAGAGTG 57.826 33.333 0.00 0.00 36.63 3.51
3992 5473 7.857734 TGTTTCAACTGAATGTTTAGAGTGA 57.142 32.000 0.00 0.00 36.63 3.41
3993 5474 7.919690 TGTTTCAACTGAATGTTTAGAGTGAG 58.080 34.615 0.00 0.00 36.63 3.51
3994 5475 7.768582 TGTTTCAACTGAATGTTTAGAGTGAGA 59.231 33.333 0.00 0.00 36.63 3.27
3995 5476 8.778358 GTTTCAACTGAATGTTTAGAGTGAGAT 58.222 33.333 0.00 0.00 36.63 2.75
3996 5477 8.908786 TTCAACTGAATGTTTAGAGTGAGATT 57.091 30.769 0.00 0.00 36.63 2.40
3997 5478 8.908786 TCAACTGAATGTTTAGAGTGAGATTT 57.091 30.769 0.00 0.00 36.63 2.17
3998 5479 9.342308 TCAACTGAATGTTTAGAGTGAGATTTT 57.658 29.630 0.00 0.00 36.63 1.82
3999 5480 9.604626 CAACTGAATGTTTAGAGTGAGATTTTC 57.395 33.333 0.00 0.00 36.63 2.29
4000 5481 9.566432 AACTGAATGTTTAGAGTGAGATTTTCT 57.434 29.630 0.00 0.00 34.84 2.52
4001 5482 8.997323 ACTGAATGTTTAGAGTGAGATTTTCTG 58.003 33.333 0.00 0.00 0.00 3.02
4002 5483 8.908786 TGAATGTTTAGAGTGAGATTTTCTGT 57.091 30.769 0.00 0.00 0.00 3.41
4003 5484 9.996554 TGAATGTTTAGAGTGAGATTTTCTGTA 57.003 29.630 0.00 0.00 0.00 2.74
4270 5752 8.901793 TGCTGCAACATTCAGATTTTGTATATA 58.098 29.630 0.00 0.00 33.54 0.86
4271 5753 9.903682 GCTGCAACATTCAGATTTTGTATATAT 57.096 29.630 0.00 0.00 33.54 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.913262 ACCATCGCAGGTGAGTCCA 60.913 57.895 0.00 0.00 41.30 4.02
6 7 2.982130 ACCATCGCAGGTGAGTCC 59.018 61.111 0.00 0.00 41.30 3.85
20 224 0.460109 CAGCAGCGCTATGTACACCA 60.460 55.000 10.99 0.00 36.40 4.17
144 348 2.456073 AGGTCCACTTACGGATAGCT 57.544 50.000 0.00 0.00 37.41 3.32
507 711 3.712020 CACACGTGTGGCACTTTTT 57.288 47.368 35.65 1.12 42.10 1.94
662 1495 3.016736 CAAACGATGTGCTCCCCTAAAT 58.983 45.455 0.00 0.00 0.00 1.40
2212 3178 3.818773 AGTGGTTTACATGTTGTAGCACC 59.181 43.478 22.33 13.35 37.80 5.01
2251 3523 1.826921 GCGGGGTCTACGATCCTCA 60.827 63.158 0.00 0.00 32.50 3.86
2287 3559 6.394809 GTTTCTCACAAAACCCAAAGAAGAA 58.605 36.000 0.00 0.00 33.86 2.52
2298 3570 2.096819 TCAGCACGGTTTCTCACAAAAC 59.903 45.455 0.00 0.00 38.21 2.43
2555 3861 2.356125 GGGCCTCAGATCAAGCAACTTA 60.356 50.000 0.84 0.00 0.00 2.24
2612 3918 4.464597 ACAGTTCAGCAGGGTTTGTAAAAA 59.535 37.500 0.00 0.00 0.00 1.94
2652 3958 5.967674 CACAAAGATGCAGAAACGATATTCC 59.032 40.000 0.00 0.00 0.00 3.01
2692 3998 7.704899 GCAGTTTACAACAGTCCAATTTTAAGT 59.295 33.333 0.00 0.00 0.00 2.24
2741 4047 6.373774 CACTATCTCAAGCCAAAACTGAAGAT 59.626 38.462 0.00 0.00 0.00 2.40
3184 4490 5.862678 AGTTTAACTTGCCCAGCTTAAAA 57.137 34.783 0.00 0.00 0.00 1.52
3210 4516 1.568612 AAGCAACACGCAGATGACGG 61.569 55.000 0.00 0.00 46.13 4.79
3211 4517 0.235665 AAAGCAACACGCAGATGACG 59.764 50.000 0.00 0.00 46.13 4.35
3339 4645 7.076842 AGTCACAACATCACTATTACATTGC 57.923 36.000 0.00 0.00 0.00 3.56
3392 4698 8.116651 ACTACACAACAATGGCAAATATAACA 57.883 30.769 0.00 0.00 0.00 2.41
3457 4763 7.307694 TGCAAGAAATCATAATCACAACAGAC 58.692 34.615 0.00 0.00 0.00 3.51
3830 5311 9.050601 AGAGTGATCAGAACTTTCAGTTTAAAG 57.949 33.333 0.00 0.00 38.80 1.85
3831 5312 8.830580 CAGAGTGATCAGAACTTTCAGTTTAAA 58.169 33.333 0.00 0.00 38.80 1.52
3832 5313 8.204160 TCAGAGTGATCAGAACTTTCAGTTTAA 58.796 33.333 0.00 0.00 38.80 1.52
3833 5314 7.726216 TCAGAGTGATCAGAACTTTCAGTTTA 58.274 34.615 0.00 0.00 38.80 2.01
3834 5315 6.586344 TCAGAGTGATCAGAACTTTCAGTTT 58.414 36.000 0.00 0.00 38.80 2.66
3835 5316 6.166984 TCAGAGTGATCAGAACTTTCAGTT 57.833 37.500 0.00 0.00 41.95 3.16
3836 5317 5.798125 TCAGAGTGATCAGAACTTTCAGT 57.202 39.130 0.00 0.00 0.00 3.41
3837 5318 6.649973 ACATTCAGAGTGATCAGAACTTTCAG 59.350 38.462 0.00 0.00 0.00 3.02
3838 5319 6.528321 ACATTCAGAGTGATCAGAACTTTCA 58.472 36.000 0.00 0.00 0.00 2.69
3839 5320 7.172190 TCAACATTCAGAGTGATCAGAACTTTC 59.828 37.037 0.00 0.00 0.00 2.62
3840 5321 6.994496 TCAACATTCAGAGTGATCAGAACTTT 59.006 34.615 0.00 0.00 0.00 2.66
3841 5322 6.528321 TCAACATTCAGAGTGATCAGAACTT 58.472 36.000 0.00 0.00 0.00 2.66
3842 5323 6.106648 TCAACATTCAGAGTGATCAGAACT 57.893 37.500 0.00 0.00 0.00 3.01
3843 5324 6.791887 TTCAACATTCAGAGTGATCAGAAC 57.208 37.500 0.00 0.00 0.00 3.01
3844 5325 7.991084 AATTCAACATTCAGAGTGATCAGAA 57.009 32.000 0.00 0.00 0.00 3.02
3845 5326 8.096414 TGTAATTCAACATTCAGAGTGATCAGA 58.904 33.333 0.00 0.00 0.00 3.27
3846 5327 8.260270 TGTAATTCAACATTCAGAGTGATCAG 57.740 34.615 0.00 0.00 0.00 2.90
3847 5328 8.096414 TCTGTAATTCAACATTCAGAGTGATCA 58.904 33.333 0.00 0.00 0.00 2.92
3848 5329 8.386606 GTCTGTAATTCAACATTCAGAGTGATC 58.613 37.037 0.00 0.00 33.57 2.92
3849 5330 7.879677 TGTCTGTAATTCAACATTCAGAGTGAT 59.120 33.333 0.00 0.00 33.57 3.06
3850 5331 7.216494 TGTCTGTAATTCAACATTCAGAGTGA 58.784 34.615 0.00 0.00 33.57 3.41
3851 5332 7.425577 TGTCTGTAATTCAACATTCAGAGTG 57.574 36.000 0.00 0.00 33.57 3.51
3852 5333 8.509690 CAATGTCTGTAATTCAACATTCAGAGT 58.490 33.333 0.00 0.00 36.57 3.24
3853 5334 8.724229 TCAATGTCTGTAATTCAACATTCAGAG 58.276 33.333 0.00 0.00 36.57 3.35
3854 5335 8.506437 GTCAATGTCTGTAATTCAACATTCAGA 58.494 33.333 0.00 0.00 36.57 3.27
3855 5336 8.291740 TGTCAATGTCTGTAATTCAACATTCAG 58.708 33.333 0.00 0.00 36.57 3.02
3856 5337 8.164058 TGTCAATGTCTGTAATTCAACATTCA 57.836 30.769 0.00 0.00 36.57 2.57
3857 5338 8.506437 TCTGTCAATGTCTGTAATTCAACATTC 58.494 33.333 0.00 0.00 36.57 2.67
3858 5339 8.394971 TCTGTCAATGTCTGTAATTCAACATT 57.605 30.769 0.00 0.00 37.78 2.71
3859 5340 7.663081 ACTCTGTCAATGTCTGTAATTCAACAT 59.337 33.333 0.00 0.00 33.06 2.71
3860 5341 6.992123 ACTCTGTCAATGTCTGTAATTCAACA 59.008 34.615 0.00 0.00 0.00 3.33
3861 5342 7.426929 ACTCTGTCAATGTCTGTAATTCAAC 57.573 36.000 0.00 0.00 0.00 3.18
3862 5343 7.933577 AGAACTCTGTCAATGTCTGTAATTCAA 59.066 33.333 0.00 0.00 0.00 2.69
3863 5344 7.386025 CAGAACTCTGTCAATGTCTGTAATTCA 59.614 37.037 0.00 0.00 39.09 2.57
3864 5345 7.600375 TCAGAACTCTGTCAATGTCTGTAATTC 59.400 37.037 6.61 0.00 44.12 2.17
3865 5346 7.445121 TCAGAACTCTGTCAATGTCTGTAATT 58.555 34.615 6.61 0.00 44.12 1.40
3866 5347 6.997655 TCAGAACTCTGTCAATGTCTGTAAT 58.002 36.000 6.61 0.00 44.12 1.89
3867 5348 6.405278 TCAGAACTCTGTCAATGTCTGTAA 57.595 37.500 6.61 0.00 44.12 2.41
3868 5349 6.405278 TTCAGAACTCTGTCAATGTCTGTA 57.595 37.500 6.61 0.00 44.12 2.74
3869 5350 4.944619 TCAGAACTCTGTCAATGTCTGT 57.055 40.909 6.61 0.00 44.12 3.41
3870 5351 4.689812 CCTTCAGAACTCTGTCAATGTCTG 59.310 45.833 6.61 0.00 44.12 3.51
3871 5352 4.346418 ACCTTCAGAACTCTGTCAATGTCT 59.654 41.667 6.61 0.00 44.12 3.41
3872 5353 4.636249 ACCTTCAGAACTCTGTCAATGTC 58.364 43.478 6.61 0.00 44.12 3.06
3873 5354 4.696479 ACCTTCAGAACTCTGTCAATGT 57.304 40.909 6.61 0.00 44.12 2.71
3874 5355 5.059161 TCAACCTTCAGAACTCTGTCAATG 58.941 41.667 6.61 2.45 44.12 2.82
3875 5356 5.070981 TCTCAACCTTCAGAACTCTGTCAAT 59.929 40.000 6.61 0.00 44.12 2.57
3876 5357 4.405680 TCTCAACCTTCAGAACTCTGTCAA 59.594 41.667 6.61 0.00 44.12 3.18
3877 5358 3.960755 TCTCAACCTTCAGAACTCTGTCA 59.039 43.478 6.61 0.00 44.12 3.58
3878 5359 4.592485 TCTCAACCTTCAGAACTCTGTC 57.408 45.455 6.61 0.00 44.12 3.51
3879 5360 5.559148 AATCTCAACCTTCAGAACTCTGT 57.441 39.130 6.61 0.00 44.12 3.41
3880 5361 6.709846 AGAAAATCTCAACCTTCAGAACTCTG 59.290 38.462 0.00 0.00 45.08 3.35
3881 5362 6.709846 CAGAAAATCTCAACCTTCAGAACTCT 59.290 38.462 0.00 0.00 0.00 3.24
3882 5363 6.484977 ACAGAAAATCTCAACCTTCAGAACTC 59.515 38.462 0.00 0.00 0.00 3.01
3883 5364 6.360618 ACAGAAAATCTCAACCTTCAGAACT 58.639 36.000 0.00 0.00 0.00 3.01
3884 5365 6.625873 ACAGAAAATCTCAACCTTCAGAAC 57.374 37.500 0.00 0.00 0.00 3.01
3885 5366 8.378565 AGATACAGAAAATCTCAACCTTCAGAA 58.621 33.333 0.00 0.00 0.00 3.02
3886 5367 7.911651 AGATACAGAAAATCTCAACCTTCAGA 58.088 34.615 0.00 0.00 0.00 3.27
3887 5368 9.829507 ATAGATACAGAAAATCTCAACCTTCAG 57.170 33.333 0.00 0.00 35.36 3.02
3916 5397 9.607988 TCAACTTGTCAGTAAATTTCACTCTAA 57.392 29.630 0.00 0.00 30.68 2.10
3917 5398 9.607988 TTCAACTTGTCAGTAAATTTCACTCTA 57.392 29.630 0.00 0.00 30.68 2.43
3918 5399 8.506168 TTCAACTTGTCAGTAAATTTCACTCT 57.494 30.769 0.00 0.00 30.68 3.24
3919 5400 9.173939 CATTCAACTTGTCAGTAAATTTCACTC 57.826 33.333 0.00 0.00 30.68 3.51
3920 5401 8.686334 ACATTCAACTTGTCAGTAAATTTCACT 58.314 29.630 0.00 0.00 30.68 3.41
3921 5402 8.856490 ACATTCAACTTGTCAGTAAATTTCAC 57.144 30.769 0.00 0.00 30.68 3.18
3922 5403 9.299963 CAACATTCAACTTGTCAGTAAATTTCA 57.700 29.630 0.00 0.00 30.68 2.69
3923 5404 9.515020 TCAACATTCAACTTGTCAGTAAATTTC 57.485 29.630 0.00 0.00 30.68 2.17
3924 5405 9.868277 TTCAACATTCAACTTGTCAGTAAATTT 57.132 25.926 0.00 0.00 30.68 1.82
3925 5406 9.868277 TTTCAACATTCAACTTGTCAGTAAATT 57.132 25.926 0.00 0.00 30.68 1.82
3927 5408 9.868277 AATTTCAACATTCAACTTGTCAGTAAA 57.132 25.926 0.00 0.00 30.68 2.01
3928 5409 9.868277 AAATTTCAACATTCAACTTGTCAGTAA 57.132 25.926 0.00 0.00 30.68 2.24
3929 5410 9.868277 AAAATTTCAACATTCAACTTGTCAGTA 57.132 25.926 0.00 0.00 30.68 2.74
3930 5411 8.658609 CAAAATTTCAACATTCAACTTGTCAGT 58.341 29.630 0.00 0.00 33.11 3.41
3931 5412 8.117988 CCAAAATTTCAACATTCAACTTGTCAG 58.882 33.333 0.00 0.00 0.00 3.51
3932 5413 7.605691 ACCAAAATTTCAACATTCAACTTGTCA 59.394 29.630 0.00 0.00 0.00 3.58
3933 5414 7.973601 ACCAAAATTTCAACATTCAACTTGTC 58.026 30.769 0.00 0.00 0.00 3.18
3934 5415 7.605691 TGACCAAAATTTCAACATTCAACTTGT 59.394 29.630 0.00 0.00 0.00 3.16
3935 5416 7.972527 TGACCAAAATTTCAACATTCAACTTG 58.027 30.769 0.00 0.00 0.00 3.16
3936 5417 7.823799 ACTGACCAAAATTTCAACATTCAACTT 59.176 29.630 0.00 0.00 0.00 2.66
3937 5418 7.330262 ACTGACCAAAATTTCAACATTCAACT 58.670 30.769 0.00 0.00 0.00 3.16
3938 5419 7.492344 AGACTGACCAAAATTTCAACATTCAAC 59.508 33.333 0.00 0.00 0.00 3.18
3939 5420 7.492020 CAGACTGACCAAAATTTCAACATTCAA 59.508 33.333 0.00 0.00 0.00 2.69
3940 5421 6.979817 CAGACTGACCAAAATTTCAACATTCA 59.020 34.615 0.00 0.00 0.00 2.57
3941 5422 7.202526 TCAGACTGACCAAAATTTCAACATTC 58.797 34.615 0.00 0.00 0.00 2.67
3942 5423 7.111247 TCAGACTGACCAAAATTTCAACATT 57.889 32.000 0.00 0.00 0.00 2.71
3943 5424 6.713762 TCAGACTGACCAAAATTTCAACAT 57.286 33.333 0.00 0.00 0.00 2.71
3944 5425 6.522625 TTCAGACTGACCAAAATTTCAACA 57.477 33.333 4.15 0.00 0.00 3.33
3945 5426 6.980397 ACATTCAGACTGACCAAAATTTCAAC 59.020 34.615 4.15 0.00 0.00 3.18
3946 5427 7.111247 ACATTCAGACTGACCAAAATTTCAA 57.889 32.000 4.15 0.00 0.00 2.69
3947 5428 6.713762 ACATTCAGACTGACCAAAATTTCA 57.286 33.333 4.15 0.00 0.00 2.69
3948 5429 7.706179 TGAAACATTCAGACTGACCAAAATTTC 59.294 33.333 4.15 9.87 34.08 2.17
3949 5430 7.555087 TGAAACATTCAGACTGACCAAAATTT 58.445 30.769 4.15 0.87 34.08 1.82
3950 5431 7.111247 TGAAACATTCAGACTGACCAAAATT 57.889 32.000 4.15 0.00 34.08 1.82
3951 5432 6.713762 TGAAACATTCAGACTGACCAAAAT 57.286 33.333 4.15 0.00 34.08 1.82
3952 5433 6.152661 AGTTGAAACATTCAGACTGACCAAAA 59.847 34.615 4.15 0.00 41.38 2.44
3953 5434 5.652014 AGTTGAAACATTCAGACTGACCAAA 59.348 36.000 4.15 0.00 41.38 3.28
3954 5435 5.066375 CAGTTGAAACATTCAGACTGACCAA 59.934 40.000 19.33 0.85 43.48 3.67
3955 5436 4.576053 CAGTTGAAACATTCAGACTGACCA 59.424 41.667 19.33 0.00 43.48 4.02
3956 5437 4.816385 TCAGTTGAAACATTCAGACTGACC 59.184 41.667 20.98 0.00 43.90 4.02
3957 5438 5.991328 TCAGTTGAAACATTCAGACTGAC 57.009 39.130 20.98 8.10 43.90 3.51
3958 5439 6.543465 ACATTCAGTTGAAACATTCAGACTGA 59.457 34.615 20.98 20.98 45.23 3.41
3959 5440 6.732154 ACATTCAGTTGAAACATTCAGACTG 58.268 36.000 18.66 18.66 42.91 3.51
3960 5441 6.949352 ACATTCAGTTGAAACATTCAGACT 57.051 33.333 0.00 0.00 41.38 3.24
3961 5442 7.992180 AAACATTCAGTTGAAACATTCAGAC 57.008 32.000 0.00 0.00 41.19 3.51
3962 5443 9.119418 TCTAAACATTCAGTTGAAACATTCAGA 57.881 29.630 0.00 0.00 41.19 3.27
3963 5444 9.390795 CTCTAAACATTCAGTTGAAACATTCAG 57.609 33.333 0.00 0.00 41.19 3.02
3964 5445 8.902806 ACTCTAAACATTCAGTTGAAACATTCA 58.097 29.630 0.00 0.00 41.19 2.57
3965 5446 9.173939 CACTCTAAACATTCAGTTGAAACATTC 57.826 33.333 0.00 0.00 41.19 2.67
3966 5447 8.902806 TCACTCTAAACATTCAGTTGAAACATT 58.097 29.630 0.00 0.00 41.19 2.71
3967 5448 8.450578 TCACTCTAAACATTCAGTTGAAACAT 57.549 30.769 0.00 0.00 41.19 2.71
3968 5449 7.768582 TCTCACTCTAAACATTCAGTTGAAACA 59.231 33.333 0.00 0.00 41.19 2.83
3969 5450 8.142994 TCTCACTCTAAACATTCAGTTGAAAC 57.857 34.615 0.00 0.00 41.19 2.78
3970 5451 8.908786 ATCTCACTCTAAACATTCAGTTGAAA 57.091 30.769 0.00 0.00 41.19 2.69
3971 5452 8.908786 AATCTCACTCTAAACATTCAGTTGAA 57.091 30.769 0.00 0.00 41.19 2.69
3972 5453 8.908786 AAATCTCACTCTAAACATTCAGTTGA 57.091 30.769 0.00 0.00 41.19 3.18
3973 5454 9.604626 GAAAATCTCACTCTAAACATTCAGTTG 57.395 33.333 0.00 0.00 41.19 3.16
3974 5455 9.566432 AGAAAATCTCACTCTAAACATTCAGTT 57.434 29.630 0.00 0.00 43.89 3.16
3975 5456 8.997323 CAGAAAATCTCACTCTAAACATTCAGT 58.003 33.333 0.00 0.00 0.00 3.41
3976 5457 8.997323 ACAGAAAATCTCACTCTAAACATTCAG 58.003 33.333 0.00 0.00 0.00 3.02
3977 5458 8.908786 ACAGAAAATCTCACTCTAAACATTCA 57.091 30.769 0.00 0.00 0.00 2.57
3986 5467 9.213799 GTTCAAAGATACAGAAAATCTCACTCT 57.786 33.333 0.00 0.00 32.48 3.24
3987 5468 9.213799 AGTTCAAAGATACAGAAAATCTCACTC 57.786 33.333 0.00 0.00 32.48 3.51
3988 5469 8.997323 CAGTTCAAAGATACAGAAAATCTCACT 58.003 33.333 0.00 0.00 32.48 3.41
3989 5470 8.993121 TCAGTTCAAAGATACAGAAAATCTCAC 58.007 33.333 0.00 0.00 32.48 3.51
3990 5471 9.559732 TTCAGTTCAAAGATACAGAAAATCTCA 57.440 29.630 0.00 0.00 32.48 3.27
3997 5478 9.787532 CAAAACTTTCAGTTCAAAGATACAGAA 57.212 29.630 0.02 0.00 37.47 3.02
3998 5479 8.405531 CCAAAACTTTCAGTTCAAAGATACAGA 58.594 33.333 0.02 0.00 37.47 3.41
3999 5480 8.190784 ACCAAAACTTTCAGTTCAAAGATACAG 58.809 33.333 0.02 0.00 37.47 2.74
4000 5481 8.062065 ACCAAAACTTTCAGTTCAAAGATACA 57.938 30.769 0.02 0.00 37.47 2.29
4001 5482 8.188139 TGACCAAAACTTTCAGTTCAAAGATAC 58.812 33.333 0.02 0.00 37.47 2.24
4002 5483 8.188139 GTGACCAAAACTTTCAGTTCAAAGATA 58.812 33.333 0.02 0.00 37.47 1.98
4003 5484 7.035612 GTGACCAAAACTTTCAGTTCAAAGAT 58.964 34.615 0.02 0.00 37.47 2.40
4004 5485 6.208599 AGTGACCAAAACTTTCAGTTCAAAGA 59.791 34.615 0.02 0.00 37.47 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.