Multiple sequence alignment - TraesCS1D01G338500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G338500 chr1D 100.000 5197 0 0 1 5197 427626134 427631330 0.000000e+00 9598.0
1 TraesCS1D01G338500 chr1D 98.837 86 1 0 4525 4610 428611594 428611679 2.510000e-33 154.0
2 TraesCS1D01G338500 chr1D 90.476 42 2 2 1307 1347 427627480 427627440 3.000000e-03 54.7
3 TraesCS1D01G338500 chr1A 90.587 2114 92 39 1923 3989 522965854 522967907 0.000000e+00 2702.0
4 TraesCS1D01G338500 chr1A 86.572 1549 86 49 245 1724 522963759 522965254 0.000000e+00 1596.0
5 TraesCS1D01G338500 chr1A 82.645 605 51 24 4631 5197 522968537 522969125 2.180000e-133 486.0
6 TraesCS1D01G338500 chr1A 82.008 478 30 24 4178 4622 522967990 522968444 6.400000e-94 355.0
7 TraesCS1D01G338500 chr1A 95.139 144 4 1 1739 1882 522965701 522965841 1.880000e-54 224.0
8 TraesCS1D01G338500 chr1A 98.824 85 1 0 4388 4472 522968348 522968432 9.010000e-33 152.0
9 TraesCS1D01G338500 chr1A 95.238 84 3 1 3940 4023 522967903 522967985 1.170000e-26 132.0
10 TraesCS1D01G338500 chr1A 79.518 166 24 4 13 169 119530289 119530125 5.500000e-20 110.0
11 TraesCS1D01G338500 chr1B 88.987 1816 104 43 1922 3683 579938431 579940204 0.000000e+00 2158.0
12 TraesCS1D01G338500 chr1B 86.850 692 33 33 793 1459 579936889 579937547 0.000000e+00 721.0
13 TraesCS1D01G338500 chr1B 82.734 695 48 43 260 941 579929262 579929897 2.110000e-153 553.0
14 TraesCS1D01G338500 chr1B 84.441 572 49 17 4649 5197 579940730 579941284 1.280000e-145 527.0
15 TraesCS1D01G338500 chr1B 85.106 423 24 12 4075 4472 579940205 579940613 3.770000e-106 396.0
16 TraesCS1D01G338500 chr1B 95.092 163 5 1 1739 1901 579938285 579938444 2.400000e-63 254.0
17 TraesCS1D01G338500 chr1B 98.824 85 1 0 4538 4622 579940541 579940625 9.010000e-33 152.0
18 TraesCS1D01G338500 chr1B 81.366 161 20 7 10 162 443579262 443579420 7.070000e-24 122.0
19 TraesCS1D01G338500 chr2B 94.264 802 36 6 1922 2717 560724052 560724849 0.000000e+00 1218.0
20 TraesCS1D01G338500 chr2B 91.176 170 6 5 1739 1901 560723898 560724065 6.770000e-54 222.0
21 TraesCS1D01G338500 chr2B 98.795 83 1 0 4394 4476 484604237 484604155 1.170000e-31 148.0
22 TraesCS1D01G338500 chr2B 95.349 43 1 1 4815 4856 669143674 669143716 3.360000e-07 67.6
23 TraesCS1D01G338500 chr6B 94.147 803 35 8 1922 2717 157886337 157885540 0.000000e+00 1212.0
24 TraesCS1D01G338500 chr6B 92.662 804 45 8 1922 2717 687971569 687970772 0.000000e+00 1146.0
25 TraesCS1D01G338500 chr6B 92.537 804 46 8 1922 2717 687995684 687994887 0.000000e+00 1140.0
26 TraesCS1D01G338500 chr6B 91.765 170 5 5 1739 1901 157886491 157886324 1.460000e-55 228.0
27 TraesCS1D01G338500 chr6B 95.172 145 4 2 1739 1882 687971723 687971581 5.240000e-55 226.0
28 TraesCS1D01G338500 chr6B 95.172 145 4 2 1739 1882 687995838 687995696 5.240000e-55 226.0
29 TraesCS1D01G338500 chr6B 79.641 167 26 7 12 172 270339122 270338958 4.250000e-21 113.0
30 TraesCS1D01G338500 chr4A 88.571 210 22 2 1955 2162 742459941 742460150 2.400000e-63 254.0
31 TraesCS1D01G338500 chr4A 86.034 179 16 3 2377 2555 742460394 742460563 3.200000e-42 183.0
32 TraesCS1D01G338500 chr4A 95.699 93 4 0 1739 1831 742459609 742459701 3.240000e-32 150.0
33 TraesCS1D01G338500 chr7D 93.151 146 5 3 1739 1882 1943244 1943386 5.270000e-50 209.0
34 TraesCS1D01G338500 chr7D 96.364 55 2 0 2501 2555 1943693 1943747 1.990000e-14 91.6
35 TraesCS1D01G338500 chr7D 89.231 65 7 0 195 259 407251593 407251529 1.200000e-11 82.4
36 TraesCS1D01G338500 chr5D 83.264 239 24 12 4391 4617 97587677 97587911 6.820000e-49 206.0
37 TraesCS1D01G338500 chr5D 96.774 93 1 2 4525 4617 468686680 468686590 2.510000e-33 154.0
38 TraesCS1D01G338500 chr5D 97.753 89 2 0 4384 4472 486160694 486160782 2.510000e-33 154.0
39 TraesCS1D01G338500 chr5D 80.982 163 19 9 12 169 447626621 447626466 9.140000e-23 119.0
40 TraesCS1D01G338500 chr5D 80.734 109 18 3 3024 3131 423965782 423965888 1.200000e-11 82.4
41 TraesCS1D01G338500 chr5D 100.000 36 0 0 4821 4856 511703215 511703250 3.360000e-07 67.6
42 TraesCS1D01G338500 chr5D 100.000 36 0 0 4821 4856 511796121 511796156 3.360000e-07 67.6
43 TraesCS1D01G338500 chr5D 97.222 36 1 0 4821 4856 511715979 511716014 1.560000e-05 62.1
44 TraesCS1D01G338500 chr7A 89.571 163 11 3 1739 1901 1741150 1740994 8.820000e-48 202.0
45 TraesCS1D01G338500 chr7A 80.723 166 26 5 12 172 554703703 554703539 1.960000e-24 124.0
46 TraesCS1D01G338500 chr7A 81.013 158 22 2 12 162 611835784 611835940 9.140000e-23 119.0
47 TraesCS1D01G338500 chr7A 79.452 146 12 8 2417 2561 1740884 1740756 2.580000e-13 87.9
48 TraesCS1D01G338500 chr7A 88.406 69 7 1 195 263 465776533 465776466 1.200000e-11 82.4
49 TraesCS1D01G338500 chr3A 97.778 90 2 0 4528 4617 520963821 520963732 6.970000e-34 156.0
50 TraesCS1D01G338500 chr3A 96.629 89 2 1 4527 4615 564558740 564558827 4.190000e-31 147.0
51 TraesCS1D01G338500 chr3A 94.565 92 4 1 4394 4485 456447406 456447316 1.950000e-29 141.0
52 TraesCS1D01G338500 chr3A 82.209 163 19 4 12 164 531906850 531906688 1.170000e-26 132.0
53 TraesCS1D01G338500 chr3A 86.957 69 8 1 4809 4877 479766444 479766511 5.580000e-10 76.8
54 TraesCS1D01G338500 chr5A 96.667 90 1 2 4384 4472 106146026 106145938 1.170000e-31 148.0
55 TraesCS1D01G338500 chr5A 94.737 95 5 0 4383 4477 606890331 606890425 1.170000e-31 148.0
56 TraesCS1D01G338500 chr5A 79.817 109 17 4 3024 3131 537369863 537369967 2.010000e-09 75.0
57 TraesCS1D01G338500 chr5A 100.000 36 0 0 4821 4856 639909018 639909053 3.360000e-07 67.6
58 TraesCS1D01G338500 chr3B 96.667 90 2 1 4528 4617 526684661 526684573 1.170000e-31 148.0
59 TraesCS1D01G338500 chr3B 96.591 88 3 0 4391 4478 526684661 526684574 4.190000e-31 147.0
60 TraesCS1D01G338500 chr5B 96.667 90 0 2 4527 4615 575518822 575518735 4.190000e-31 147.0
61 TraesCS1D01G338500 chr5B 78.102 137 26 4 3024 3159 511836579 511836712 3.330000e-12 84.2
62 TraesCS1D01G338500 chr3D 96.591 88 3 0 4528 4615 400786511 400786424 4.190000e-31 147.0
63 TraesCS1D01G338500 chr4B 81.595 163 22 3 12 168 17154087 17153927 1.520000e-25 128.0
64 TraesCS1D01G338500 chr4B 86.667 75 8 1 185 259 665289982 665290054 1.200000e-11 82.4
65 TraesCS1D01G338500 chr2D 79.755 163 27 5 12 169 587551088 587551249 4.250000e-21 113.0
66 TraesCS1D01G338500 chr2D 85.714 70 7 3 4789 4856 560202906 560202974 2.600000e-08 71.3
67 TraesCS1D01G338500 chr7B 90.769 65 6 0 195 259 418753000 418752936 2.580000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G338500 chr1D 427626134 427631330 5196 False 9598.000000 9598 100.000000 1 5197 1 chr1D.!!$F1 5196
1 TraesCS1D01G338500 chr1A 522963759 522969125 5366 False 806.714286 2702 90.144714 245 5197 7 chr1A.!!$F1 4952
2 TraesCS1D01G338500 chr1B 579936889 579941284 4395 False 701.333333 2158 89.883333 793 5197 6 chr1B.!!$F3 4404
3 TraesCS1D01G338500 chr1B 579929262 579929897 635 False 553.000000 553 82.734000 260 941 1 chr1B.!!$F2 681
4 TraesCS1D01G338500 chr2B 560723898 560724849 951 False 720.000000 1218 92.720000 1739 2717 2 chr2B.!!$F2 978
5 TraesCS1D01G338500 chr6B 157885540 157886491 951 True 720.000000 1212 92.956000 1739 2717 2 chr6B.!!$R2 978
6 TraesCS1D01G338500 chr6B 687970772 687971723 951 True 686.000000 1146 93.917000 1739 2717 2 chr6B.!!$R3 978
7 TraesCS1D01G338500 chr6B 687994887 687995838 951 True 683.000000 1140 93.854500 1739 2717 2 chr6B.!!$R4 978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 674 0.110419 TGCATTGTTTACGCAGACGC 60.110 50.0 0.00 0.0 45.53 5.19 F
1280 1355 0.107848 GGCTGGCGCTTAGTTCCTTA 60.108 55.0 7.64 0.0 36.09 2.69 F
2316 2928 0.036732 ACTGCCGTCCATGATTGTGT 59.963 50.0 0.00 0.0 0.00 3.72 F
4061 4786 0.457853 TGGTAGCGACTTCATGCGAC 60.458 55.0 0.00 0.0 36.20 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1820 1.454847 AAAGCAGACAACCGGCCAA 60.455 52.632 0.00 0.00 36.60 4.52 R
2747 3371 0.454196 ACGGCAACTGTCCAACAAAC 59.546 50.000 0.00 0.00 0.00 2.93 R
4072 4797 0.098728 CGCACGGGGATTCAACAATC 59.901 55.000 0.00 0.00 38.19 2.67 R
5044 5950 0.392595 CTTTAGGGTGGAGCGTTCCC 60.393 60.000 16.38 7.02 43.33 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.688694 AAGTTTTGGTCATGCATGCAT 57.311 38.095 27.46 27.46 37.08 3.96
48 49 9.206870 CATTGTAATTAATGCATTGGTAATCCC 57.793 33.333 22.27 8.30 31.96 3.85
49 50 7.904558 TGTAATTAATGCATTGGTAATCCCA 57.095 32.000 22.27 10.45 43.27 4.37
72 73 9.353999 CCCAATATTTGTAAGAAAAACTAGTGC 57.646 33.333 0.00 0.00 0.00 4.40
73 74 9.906660 CCAATATTTGTAAGAAAAACTAGTGCA 57.093 29.630 0.00 0.00 0.00 4.57
84 85 9.683069 AAGAAAAACTAGTGCATTAATTGAGTG 57.317 29.630 0.00 0.00 0.00 3.51
85 86 8.850156 AGAAAAACTAGTGCATTAATTGAGTGT 58.150 29.630 0.00 0.00 0.00 3.55
86 87 9.463443 GAAAAACTAGTGCATTAATTGAGTGTT 57.537 29.630 0.00 0.00 0.00 3.32
87 88 9.816354 AAAAACTAGTGCATTAATTGAGTGTTT 57.184 25.926 0.00 0.00 0.00 2.83
88 89 9.463443 AAAACTAGTGCATTAATTGAGTGTTTC 57.537 29.630 0.00 0.00 0.00 2.78
89 90 7.986085 ACTAGTGCATTAATTGAGTGTTTCT 57.014 32.000 0.00 0.00 0.00 2.52
90 91 9.502091 AACTAGTGCATTAATTGAGTGTTTCTA 57.498 29.630 0.00 0.00 0.00 2.10
91 92 8.936864 ACTAGTGCATTAATTGAGTGTTTCTAC 58.063 33.333 0.00 0.00 0.00 2.59
92 93 7.744087 AGTGCATTAATTGAGTGTTTCTACA 57.256 32.000 0.00 0.00 0.00 2.74
93 94 8.165239 AGTGCATTAATTGAGTGTTTCTACAA 57.835 30.769 0.00 0.00 35.69 2.41
94 95 8.629158 AGTGCATTAATTGAGTGTTTCTACAAA 58.371 29.630 0.00 0.00 35.69 2.83
95 96 8.905702 GTGCATTAATTGAGTGTTTCTACAAAG 58.094 33.333 0.00 0.00 35.69 2.77
96 97 8.629158 TGCATTAATTGAGTGTTTCTACAAAGT 58.371 29.630 0.00 0.00 35.69 2.66
128 129 6.588719 TTTTTCACCATCTACCTTGATTGG 57.411 37.500 0.00 0.00 0.00 3.16
129 130 4.927267 TTCACCATCTACCTTGATTGGT 57.073 40.909 0.00 0.00 43.66 3.67
130 131 4.220693 TCACCATCTACCTTGATTGGTG 57.779 45.455 12.94 12.94 41.47 4.17
131 132 3.843619 TCACCATCTACCTTGATTGGTGA 59.156 43.478 16.77 16.77 43.59 4.02
132 133 4.080919 TCACCATCTACCTTGATTGGTGAG 60.081 45.833 16.77 0.00 42.49 3.51
133 134 4.080919 CACCATCTACCTTGATTGGTGAGA 60.081 45.833 13.72 0.00 41.99 3.27
134 135 4.723789 ACCATCTACCTTGATTGGTGAGAT 59.276 41.667 0.00 0.00 41.05 2.75
135 136 5.192522 ACCATCTACCTTGATTGGTGAGATT 59.807 40.000 0.00 0.00 41.05 2.40
136 137 6.125029 CCATCTACCTTGATTGGTGAGATTT 58.875 40.000 0.00 0.00 41.05 2.17
137 138 6.604795 CCATCTACCTTGATTGGTGAGATTTT 59.395 38.462 0.00 0.00 41.05 1.82
138 139 7.123247 CCATCTACCTTGATTGGTGAGATTTTT 59.877 37.037 0.00 0.00 41.05 1.94
139 140 7.452880 TCTACCTTGATTGGTGAGATTTTTG 57.547 36.000 0.00 0.00 41.05 2.44
140 141 7.230747 TCTACCTTGATTGGTGAGATTTTTGA 58.769 34.615 0.00 0.00 41.05 2.69
141 142 6.336842 ACCTTGATTGGTGAGATTTTTGAG 57.663 37.500 0.00 0.00 39.17 3.02
142 143 5.244626 ACCTTGATTGGTGAGATTTTTGAGG 59.755 40.000 0.00 0.00 39.17 3.86
143 144 5.244626 CCTTGATTGGTGAGATTTTTGAGGT 59.755 40.000 0.00 0.00 0.00 3.85
144 145 5.710513 TGATTGGTGAGATTTTTGAGGTG 57.289 39.130 0.00 0.00 0.00 4.00
145 146 5.384336 TGATTGGTGAGATTTTTGAGGTGA 58.616 37.500 0.00 0.00 0.00 4.02
146 147 5.474532 TGATTGGTGAGATTTTTGAGGTGAG 59.525 40.000 0.00 0.00 0.00 3.51
147 148 3.149196 TGGTGAGATTTTTGAGGTGAGC 58.851 45.455 0.00 0.00 0.00 4.26
148 149 2.489722 GGTGAGATTTTTGAGGTGAGCC 59.510 50.000 0.00 0.00 0.00 4.70
149 150 2.489722 GTGAGATTTTTGAGGTGAGCCC 59.510 50.000 0.00 0.00 34.57 5.19
151 152 3.587061 TGAGATTTTTGAGGTGAGCCCTA 59.413 43.478 0.00 0.00 46.51 3.53
152 153 4.228210 TGAGATTTTTGAGGTGAGCCCTAT 59.772 41.667 0.00 0.00 46.51 2.57
153 154 5.428457 TGAGATTTTTGAGGTGAGCCCTATA 59.572 40.000 0.00 0.00 46.51 1.31
154 155 6.069673 TGAGATTTTTGAGGTGAGCCCTATAA 60.070 38.462 0.00 0.00 46.51 0.98
155 156 6.731467 AGATTTTTGAGGTGAGCCCTATAAA 58.269 36.000 0.00 0.00 46.51 1.40
156 157 6.603599 AGATTTTTGAGGTGAGCCCTATAAAC 59.396 38.462 0.00 0.00 46.51 2.01
157 158 3.926058 TTGAGGTGAGCCCTATAAACC 57.074 47.619 0.00 0.00 46.51 3.27
158 159 1.760613 TGAGGTGAGCCCTATAAACCG 59.239 52.381 0.00 0.00 46.51 4.44
159 160 2.037144 GAGGTGAGCCCTATAAACCGA 58.963 52.381 0.00 0.00 46.51 4.69
160 161 2.433239 GAGGTGAGCCCTATAAACCGAA 59.567 50.000 0.00 0.00 46.51 4.30
161 162 2.841881 AGGTGAGCCCTATAAACCGAAA 59.158 45.455 0.00 0.00 43.87 3.46
162 163 3.118371 AGGTGAGCCCTATAAACCGAAAG 60.118 47.826 0.00 0.00 43.87 2.62
163 164 3.118519 GGTGAGCCCTATAAACCGAAAGA 60.119 47.826 0.00 0.00 0.00 2.52
164 165 4.120589 GTGAGCCCTATAAACCGAAAGAG 58.879 47.826 0.00 0.00 0.00 2.85
165 166 4.028131 TGAGCCCTATAAACCGAAAGAGA 58.972 43.478 0.00 0.00 0.00 3.10
166 167 4.099573 TGAGCCCTATAAACCGAAAGAGAG 59.900 45.833 0.00 0.00 0.00 3.20
167 168 4.287552 AGCCCTATAAACCGAAAGAGAGA 58.712 43.478 0.00 0.00 0.00 3.10
168 169 4.342665 AGCCCTATAAACCGAAAGAGAGAG 59.657 45.833 0.00 0.00 0.00 3.20
169 170 4.341520 GCCCTATAAACCGAAAGAGAGAGA 59.658 45.833 0.00 0.00 0.00 3.10
170 171 5.163437 GCCCTATAAACCGAAAGAGAGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
171 172 6.274579 CCCTATAAACCGAAAGAGAGAGAAC 58.725 44.000 0.00 0.00 0.00 3.01
172 173 6.127423 CCCTATAAACCGAAAGAGAGAGAACA 60.127 42.308 0.00 0.00 0.00 3.18
173 174 7.418025 CCCTATAAACCGAAAGAGAGAGAACAT 60.418 40.741 0.00 0.00 0.00 2.71
174 175 7.982354 CCTATAAACCGAAAGAGAGAGAACATT 59.018 37.037 0.00 0.00 0.00 2.71
177 178 7.835634 AAACCGAAAGAGAGAGAACATTATC 57.164 36.000 0.00 0.00 0.00 1.75
178 179 5.583495 ACCGAAAGAGAGAGAACATTATCG 58.417 41.667 0.00 0.00 0.00 2.92
179 180 4.979197 CCGAAAGAGAGAGAACATTATCGG 59.021 45.833 0.00 0.00 39.90 4.18
180 181 5.450688 CCGAAAGAGAGAGAACATTATCGGT 60.451 44.000 0.00 0.00 40.73 4.69
181 182 5.683743 CGAAAGAGAGAGAACATTATCGGTC 59.316 44.000 0.00 0.00 0.00 4.79
182 183 5.523438 AAGAGAGAGAACATTATCGGTCC 57.477 43.478 0.00 0.00 0.00 4.46
183 184 4.537751 AGAGAGAGAACATTATCGGTCCA 58.462 43.478 0.00 0.00 0.00 4.02
184 185 5.144100 AGAGAGAGAACATTATCGGTCCAT 58.856 41.667 0.00 0.00 0.00 3.41
185 186 5.600484 AGAGAGAGAACATTATCGGTCCATT 59.400 40.000 0.00 0.00 0.00 3.16
186 187 6.098982 AGAGAGAGAACATTATCGGTCCATTT 59.901 38.462 0.00 0.00 0.00 2.32
187 188 6.653989 AGAGAGAACATTATCGGTCCATTTT 58.346 36.000 0.00 0.00 0.00 1.82
188 189 6.763610 AGAGAGAACATTATCGGTCCATTTTC 59.236 38.462 0.00 0.00 0.00 2.29
189 190 5.823045 AGAGAACATTATCGGTCCATTTTCC 59.177 40.000 0.00 0.00 0.00 3.13
190 191 5.505780 AGAACATTATCGGTCCATTTTCCA 58.494 37.500 0.00 0.00 0.00 3.53
191 192 6.129179 AGAACATTATCGGTCCATTTTCCAT 58.871 36.000 0.00 0.00 0.00 3.41
192 193 5.772825 ACATTATCGGTCCATTTTCCATG 57.227 39.130 0.00 0.00 0.00 3.66
193 194 4.037923 ACATTATCGGTCCATTTTCCATGC 59.962 41.667 0.00 0.00 0.00 4.06
194 195 2.442236 ATCGGTCCATTTTCCATGCT 57.558 45.000 0.00 0.00 0.00 3.79
195 196 3.576078 ATCGGTCCATTTTCCATGCTA 57.424 42.857 0.00 0.00 0.00 3.49
196 197 2.639065 TCGGTCCATTTTCCATGCTAC 58.361 47.619 0.00 0.00 0.00 3.58
197 198 2.238646 TCGGTCCATTTTCCATGCTACT 59.761 45.455 0.00 0.00 0.00 2.57
198 199 2.614057 CGGTCCATTTTCCATGCTACTC 59.386 50.000 0.00 0.00 0.00 2.59
199 200 2.952310 GGTCCATTTTCCATGCTACTCC 59.048 50.000 0.00 0.00 0.00 3.85
200 201 2.952310 GTCCATTTTCCATGCTACTCCC 59.048 50.000 0.00 0.00 0.00 4.30
201 202 2.852449 TCCATTTTCCATGCTACTCCCT 59.148 45.455 0.00 0.00 0.00 4.20
202 203 3.117888 TCCATTTTCCATGCTACTCCCTC 60.118 47.826 0.00 0.00 0.00 4.30
203 204 3.217626 CATTTTCCATGCTACTCCCTCC 58.782 50.000 0.00 0.00 0.00 4.30
204 205 0.830648 TTTCCATGCTACTCCCTCCG 59.169 55.000 0.00 0.00 0.00 4.63
205 206 0.325296 TTCCATGCTACTCCCTCCGT 60.325 55.000 0.00 0.00 0.00 4.69
206 207 0.755698 TCCATGCTACTCCCTCCGTC 60.756 60.000 0.00 0.00 0.00 4.79
207 208 0.757188 CCATGCTACTCCCTCCGTCT 60.757 60.000 0.00 0.00 0.00 4.18
208 209 0.671251 CATGCTACTCCCTCCGTCTC 59.329 60.000 0.00 0.00 0.00 3.36
209 210 0.553819 ATGCTACTCCCTCCGTCTCT 59.446 55.000 0.00 0.00 0.00 3.10
210 211 0.331954 TGCTACTCCCTCCGTCTCTT 59.668 55.000 0.00 0.00 0.00 2.85
211 212 1.562942 TGCTACTCCCTCCGTCTCTTA 59.437 52.381 0.00 0.00 0.00 2.10
212 213 1.948834 GCTACTCCCTCCGTCTCTTAC 59.051 57.143 0.00 0.00 0.00 2.34
213 214 2.421811 GCTACTCCCTCCGTCTCTTACT 60.422 54.545 0.00 0.00 0.00 2.24
214 215 3.181456 GCTACTCCCTCCGTCTCTTACTA 60.181 52.174 0.00 0.00 0.00 1.82
215 216 4.505390 GCTACTCCCTCCGTCTCTTACTAT 60.505 50.000 0.00 0.00 0.00 2.12
216 217 5.279910 GCTACTCCCTCCGTCTCTTACTATA 60.280 48.000 0.00 0.00 0.00 1.31
217 218 5.643421 ACTCCCTCCGTCTCTTACTATAA 57.357 43.478 0.00 0.00 0.00 0.98
218 219 5.623169 ACTCCCTCCGTCTCTTACTATAAG 58.377 45.833 0.00 0.00 0.00 1.73
219 220 5.369110 ACTCCCTCCGTCTCTTACTATAAGA 59.631 44.000 0.00 0.00 0.00 2.10
220 221 6.044637 ACTCCCTCCGTCTCTTACTATAAGAT 59.955 42.308 0.00 0.00 0.00 2.40
221 222 7.237263 ACTCCCTCCGTCTCTTACTATAAGATA 59.763 40.741 0.00 0.00 0.00 1.98
222 223 8.160434 TCCCTCCGTCTCTTACTATAAGATAT 57.840 38.462 0.00 0.00 0.00 1.63
223 224 8.613034 TCCCTCCGTCTCTTACTATAAGATATT 58.387 37.037 0.00 0.00 0.00 1.28
224 225 9.902684 CCCTCCGTCTCTTACTATAAGATATTA 57.097 37.037 0.00 0.00 0.00 0.98
332 336 1.068194 CGGTGTTGGTTTGTTGTGTGT 60.068 47.619 0.00 0.00 0.00 3.72
456 460 1.025113 GCAACTTCTTCGGCTACCCC 61.025 60.000 0.00 0.00 0.00 4.95
520 524 1.334243 GCTGCCTCAGGTAGTACGTAG 59.666 57.143 10.94 0.00 37.73 3.51
522 526 3.276857 CTGCCTCAGGTAGTACGTAGAA 58.723 50.000 0.00 0.00 30.75 2.10
523 527 3.276857 TGCCTCAGGTAGTACGTAGAAG 58.723 50.000 0.00 0.00 0.00 2.85
525 529 3.944015 GCCTCAGGTAGTACGTAGAAGAA 59.056 47.826 0.00 0.00 0.00 2.52
526 530 4.035441 GCCTCAGGTAGTACGTAGAAGAAG 59.965 50.000 0.00 0.00 0.00 2.85
527 531 4.035441 CCTCAGGTAGTACGTAGAAGAAGC 59.965 50.000 0.00 0.00 0.00 3.86
528 532 4.841422 TCAGGTAGTACGTAGAAGAAGCT 58.159 43.478 0.00 0.00 0.00 3.74
529 533 4.634883 TCAGGTAGTACGTAGAAGAAGCTG 59.365 45.833 0.00 5.59 33.49 4.24
537 541 0.885879 TAGAAGAAGCTGGCGACGAA 59.114 50.000 0.00 0.00 0.00 3.85
540 544 2.048127 GAAGCTGGCGACGAAGGT 60.048 61.111 0.00 0.00 0.00 3.50
571 575 3.003793 GTCGTCATCATGTGCTAGCTAGA 59.996 47.826 25.15 3.82 0.00 2.43
585 589 1.519408 GCTAGAAAAGCCAACCGTGA 58.481 50.000 0.00 0.00 46.25 4.35
591 595 1.981256 AAAGCCAACCGTGAATCAGT 58.019 45.000 0.00 0.00 0.00 3.41
592 596 1.981256 AAGCCAACCGTGAATCAGTT 58.019 45.000 0.00 0.00 0.00 3.16
598 602 3.679980 CCAACCGTGAATCAGTTAGTCAG 59.320 47.826 0.00 0.00 31.70 3.51
600 604 4.175787 ACCGTGAATCAGTTAGTCAGTC 57.824 45.455 0.00 0.00 31.70 3.51
601 605 3.572682 ACCGTGAATCAGTTAGTCAGTCA 59.427 43.478 0.00 0.00 31.70 3.41
602 606 4.038763 ACCGTGAATCAGTTAGTCAGTCAA 59.961 41.667 0.00 0.00 31.70 3.18
603 607 5.171476 CCGTGAATCAGTTAGTCAGTCAAT 58.829 41.667 0.00 0.00 31.70 2.57
604 608 5.639506 CCGTGAATCAGTTAGTCAGTCAATT 59.360 40.000 0.00 0.00 31.70 2.32
605 609 6.183360 CCGTGAATCAGTTAGTCAGTCAATTC 60.183 42.308 0.00 0.00 31.70 2.17
642 646 4.455606 ACGGAGAAATCAAGAATCCATCC 58.544 43.478 0.00 0.00 0.00 3.51
670 674 0.110419 TGCATTGTTTACGCAGACGC 60.110 50.000 0.00 0.00 45.53 5.19
671 675 0.110419 GCATTGTTTACGCAGACGCA 60.110 50.000 0.00 0.00 45.53 5.24
672 676 1.869503 CATTGTTTACGCAGACGCAG 58.130 50.000 0.00 0.00 45.53 5.18
673 677 1.459209 CATTGTTTACGCAGACGCAGA 59.541 47.619 0.00 0.00 45.53 4.26
691 695 5.049405 ACGCAGAAGAAAATAACAAGGTCAG 60.049 40.000 0.00 0.00 0.00 3.51
728 736 0.870307 ATATGAACGTCGACCTGCGC 60.870 55.000 10.58 0.00 40.61 6.09
746 754 1.567537 CGTGTGCCAAGTACCAACG 59.432 57.895 0.00 0.00 0.00 4.10
809 817 8.340230 AGAAAAGTCGCAACTCATTTAAAAAG 57.660 30.769 0.00 0.00 33.48 2.27
814 831 8.340230 AGTCGCAACTCATTTAAAAAGAAAAG 57.660 30.769 7.70 0.00 0.00 2.27
962 993 2.781158 CCGCCGGGCCAATAAAAGG 61.781 63.158 14.55 1.80 0.00 3.11
989 1020 4.154347 GCACGGCAGGAGAGGGAG 62.154 72.222 0.00 0.00 0.00 4.30
994 1025 1.457455 GGCAGGAGAGGGAGAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
1017 1048 1.306997 GAGAGACCATCCCACCCCA 60.307 63.158 0.00 0.00 0.00 4.96
1070 1101 2.191641 CTGGGAAGCAGCTAGGGC 59.808 66.667 0.00 0.00 39.06 5.19
1277 1352 2.046314 TGGCTGGCGCTTAGTTCC 60.046 61.111 7.64 4.77 36.09 3.62
1280 1355 0.107848 GGCTGGCGCTTAGTTCCTTA 60.108 55.000 7.64 0.00 36.09 2.69
1371 1450 4.580167 TGTGCTTGTTTTAGTCAGCTTGAT 59.420 37.500 0.00 0.00 0.00 2.57
1372 1451 5.067674 TGTGCTTGTTTTAGTCAGCTTGATT 59.932 36.000 0.00 0.00 0.00 2.57
1373 1452 5.400485 GTGCTTGTTTTAGTCAGCTTGATTG 59.600 40.000 0.00 0.00 0.00 2.67
1374 1453 5.299028 TGCTTGTTTTAGTCAGCTTGATTGA 59.701 36.000 0.00 0.00 0.00 2.57
1375 1454 6.183360 TGCTTGTTTTAGTCAGCTTGATTGAA 60.183 34.615 0.00 0.00 0.00 2.69
1377 1456 7.566760 TTGTTTTAGTCAGCTTGATTGAAGA 57.433 32.000 0.00 0.00 32.82 2.87
1378 1457 7.194607 TGTTTTAGTCAGCTTGATTGAAGAG 57.805 36.000 0.00 0.00 32.82 2.85
1380 1459 2.344950 AGTCAGCTTGATTGAAGAGCG 58.655 47.619 0.00 0.00 41.19 5.03
1381 1460 2.072298 GTCAGCTTGATTGAAGAGCGT 58.928 47.619 0.00 0.00 41.19 5.07
1382 1461 2.071540 TCAGCTTGATTGAAGAGCGTG 58.928 47.619 0.00 0.00 41.19 5.34
1383 1462 0.801251 AGCTTGATTGAAGAGCGTGC 59.199 50.000 0.00 0.00 41.19 5.34
1384 1463 0.179179 GCTTGATTGAAGAGCGTGCC 60.179 55.000 0.00 0.00 32.82 5.01
1389 1468 0.530744 ATTGAAGAGCGTGCCGAGTA 59.469 50.000 0.00 0.00 0.00 2.59
1400 1479 2.815308 CCGAGTAGATTGGCGCCT 59.185 61.111 29.70 8.29 0.00 5.52
1445 1524 2.388232 GCGCAGATCGGACGGTTTT 61.388 57.895 0.30 0.00 38.94 2.43
1519 1639 7.530863 GTTAGCTTGAGTTTATCCTTTGGAAG 58.469 38.462 0.00 0.00 34.34 3.46
1520 1640 5.635120 AGCTTGAGTTTATCCTTTGGAAGT 58.365 37.500 0.00 0.00 34.34 3.01
1545 1669 3.056328 GGGAGGGTTCGCTTGTGC 61.056 66.667 0.00 0.00 33.73 4.57
1577 1705 1.476488 GCCGGCTCAATTAATTGGTGT 59.524 47.619 24.40 0.00 38.30 4.16
1578 1706 2.094234 GCCGGCTCAATTAATTGGTGTT 60.094 45.455 24.40 0.00 38.30 3.32
1602 1730 3.964031 AGGCTTACTAGCTACTGCATTCT 59.036 43.478 0.00 0.00 46.90 2.40
1635 1767 1.243902 TCTCCCGACCATTGTTTTGC 58.756 50.000 0.00 0.00 0.00 3.68
1644 1776 4.298332 GACCATTGTTTTGCTTGTTCGAT 58.702 39.130 0.00 0.00 0.00 3.59
1682 1814 4.054780 TGTTCACCTGTAGAACTGTGTC 57.945 45.455 7.47 0.00 44.30 3.67
1683 1815 3.449377 TGTTCACCTGTAGAACTGTGTCA 59.551 43.478 7.47 0.00 44.30 3.58
1730 1865 3.649023 TGGAAGTACCACCTTAGCTTTGA 59.351 43.478 0.00 0.00 44.64 2.69
1734 1869 5.242795 AGTACCACCTTAGCTTTGATTGT 57.757 39.130 0.00 0.00 0.00 2.71
1735 1870 5.246307 AGTACCACCTTAGCTTTGATTGTC 58.754 41.667 0.00 0.00 0.00 3.18
1736 1871 4.373156 ACCACCTTAGCTTTGATTGTCT 57.627 40.909 0.00 0.00 0.00 3.41
1737 1872 4.074970 ACCACCTTAGCTTTGATTGTCTG 58.925 43.478 0.00 0.00 0.00 3.51
1908 2514 6.847956 TTAACTAGACTATCTCTGAGTCGC 57.152 41.667 4.32 0.00 46.58 5.19
1909 2515 4.409718 ACTAGACTATCTCTGAGTCGCA 57.590 45.455 4.32 0.00 46.58 5.10
1910 2516 4.771903 ACTAGACTATCTCTGAGTCGCAA 58.228 43.478 4.32 0.00 46.58 4.85
1911 2517 5.186942 ACTAGACTATCTCTGAGTCGCAAA 58.813 41.667 4.32 0.00 46.58 3.68
1912 2518 5.648526 ACTAGACTATCTCTGAGTCGCAAAA 59.351 40.000 4.32 0.00 46.58 2.44
1913 2519 5.392767 AGACTATCTCTGAGTCGCAAAAA 57.607 39.130 4.32 0.00 46.58 1.94
1949 2557 7.256756 AGACTATCTCATATGCTTGTTTTGC 57.743 36.000 0.00 0.00 0.00 3.68
1953 2561 3.696051 TCTCATATGCTTGTTTTGCCTCC 59.304 43.478 0.00 0.00 0.00 4.30
2052 2661 2.231721 AGAGGTTGAGAAGACCGTAAGC 59.768 50.000 0.00 0.00 42.11 3.09
2119 2728 4.682787 TCAGTCCTTCAGCGTATACATTG 58.317 43.478 3.32 0.64 0.00 2.82
2252 2864 4.666512 AGCCAAGGATGTTGATGTAAGTT 58.333 39.130 0.00 0.00 0.00 2.66
2316 2928 0.036732 ACTGCCGTCCATGATTGTGT 59.963 50.000 0.00 0.00 0.00 3.72
2358 2970 8.214721 ACAAGTTCACTTTTCTAGAAAGAAGG 57.785 34.615 17.05 11.46 42.60 3.46
2657 3272 6.074088 CCTTTCTATGCGAGTTATAAGTGCAG 60.074 42.308 16.90 9.03 39.17 4.41
2665 3280 5.960105 GCGAGTTATAAGTGCAGTTGAAATC 59.040 40.000 17.21 16.25 0.00 2.17
2788 3412 5.445540 CGTTCTTTTTGACGGTTCTATAGGC 60.446 44.000 0.00 0.00 0.00 3.93
2790 3414 1.930567 TTTGACGGTTCTATAGGCGC 58.069 50.000 0.00 0.00 0.00 6.53
2810 3434 2.867647 GCTGTTGCACAAGGAAATTCCC 60.868 50.000 8.66 0.00 36.78 3.97
2812 3436 1.970640 GTTGCACAAGGAAATTCCCCT 59.029 47.619 8.66 0.00 37.19 4.79
2953 3583 6.856426 GCACTATTTGAAACGATTAATAGCCC 59.144 38.462 7.49 0.00 35.15 5.19
2954 3584 7.255139 GCACTATTTGAAACGATTAATAGCCCT 60.255 37.037 7.49 0.00 35.15 5.19
2974 3604 4.184629 CCTTCCAGAAAAGAGGATGTACG 58.815 47.826 0.00 0.00 33.10 3.67
3144 3775 7.303713 CCTAGGTAAGGGGTTAAGAGAGATTA 58.696 42.308 0.00 0.00 42.32 1.75
3164 3795 8.574309 AGATTATCTCAACTATTCTCCCCTTT 57.426 34.615 0.00 0.00 0.00 3.11
3332 3992 3.640967 AGGAAGTTGGTGCATTTTAAGCA 59.359 39.130 0.00 0.00 40.19 3.91
3333 3993 4.284234 AGGAAGTTGGTGCATTTTAAGCAT 59.716 37.500 0.00 0.00 44.79 3.79
3429 4091 9.814899 TCATCATTTTGTTTTTGAATGTACTGT 57.185 25.926 0.00 0.00 33.60 3.55
3486 4148 1.134175 GATGTTTACCATGGTTGCCGG 59.866 52.381 25.38 0.00 32.56 6.13
3494 4156 2.866726 ATGGTTGCCGGTTTGCACC 61.867 57.895 1.90 2.94 41.88 5.01
3504 4181 0.961019 GGTTTGCACCTTGAGCATCA 59.039 50.000 0.00 0.00 41.25 3.07
3646 4325 1.003839 TACACCCTCTTTGCCGCTG 60.004 57.895 0.00 0.00 0.00 5.18
3647 4326 3.741476 CACCCTCTTTGCCGCTGC 61.741 66.667 0.00 0.00 38.26 5.25
3648 4327 3.958860 ACCCTCTTTGCCGCTGCT 61.959 61.111 0.70 0.00 38.71 4.24
3649 4328 2.268920 CCCTCTTTGCCGCTGCTA 59.731 61.111 0.70 0.00 38.71 3.49
3662 4341 3.053455 CCGCTGCTAGCTAGTAACATTC 58.947 50.000 21.62 4.13 39.60 2.67
3757 4436 8.863049 GTTAGAATCAAAACATTTACCTGCATG 58.137 33.333 0.00 0.00 0.00 4.06
3762 4441 3.855689 AACATTTACCTGCATGTGCTC 57.144 42.857 4.73 0.00 42.66 4.26
3794 4475 4.144297 TGCTTGATTTCTAACCTTGTGCT 58.856 39.130 0.00 0.00 0.00 4.40
3796 4477 4.919754 GCTTGATTTCTAACCTTGTGCTTG 59.080 41.667 0.00 0.00 0.00 4.01
3894 4575 1.326245 TGTGTTTTGTTGCGAGACTCG 59.674 47.619 20.56 20.56 43.89 4.18
3964 4689 3.644884 AGTAGTATGCACTATCACCGC 57.355 47.619 0.00 0.00 39.43 5.68
3969 4694 1.656652 ATGCACTATCACCGCAGAAC 58.343 50.000 0.00 0.00 39.39 3.01
3994 4719 2.029739 TGTGAATGATGCCTGTGCTTTG 60.030 45.455 0.00 0.00 38.71 2.77
4023 4748 6.368791 CCGTTAGATGTGAATTCTGAACTTGA 59.631 38.462 7.05 0.00 0.00 3.02
4025 4750 7.116948 CGTTAGATGTGAATTCTGAACTTGAGT 59.883 37.037 7.05 0.00 0.00 3.41
4026 4751 9.424319 GTTAGATGTGAATTCTGAACTTGAGTA 57.576 33.333 7.05 0.00 0.00 2.59
4027 4752 9.645059 TTAGATGTGAATTCTGAACTTGAGTAG 57.355 33.333 7.05 0.00 0.00 2.57
4028 4753 7.675062 AGATGTGAATTCTGAACTTGAGTAGT 58.325 34.615 7.05 0.00 39.32 2.73
4029 4754 8.807118 AGATGTGAATTCTGAACTTGAGTAGTA 58.193 33.333 7.05 0.00 35.54 1.82
4030 4755 8.994429 ATGTGAATTCTGAACTTGAGTAGTAG 57.006 34.615 7.05 0.00 35.54 2.57
4031 4756 8.178313 TGTGAATTCTGAACTTGAGTAGTAGA 57.822 34.615 7.05 0.00 35.54 2.59
4032 4757 8.638873 TGTGAATTCTGAACTTGAGTAGTAGAA 58.361 33.333 7.05 0.00 35.54 2.10
4033 4758 9.477484 GTGAATTCTGAACTTGAGTAGTAGAAA 57.523 33.333 7.05 0.00 35.54 2.52
4037 4762 8.818141 TTCTGAACTTGAGTAGTAGAAATGTG 57.182 34.615 0.00 0.00 35.54 3.21
4038 4763 7.952671 TCTGAACTTGAGTAGTAGAAATGTGT 58.047 34.615 0.00 0.00 35.54 3.72
4039 4764 8.421784 TCTGAACTTGAGTAGTAGAAATGTGTT 58.578 33.333 0.00 0.00 35.54 3.32
4040 4765 9.692749 CTGAACTTGAGTAGTAGAAATGTGTTA 57.307 33.333 0.00 0.00 35.54 2.41
4044 4769 9.436957 ACTTGAGTAGTAGAAATGTGTTAATGG 57.563 33.333 0.00 0.00 34.56 3.16
4045 4770 9.436957 CTTGAGTAGTAGAAATGTGTTAATGGT 57.563 33.333 0.00 0.00 0.00 3.55
4048 4773 8.943909 AGTAGTAGAAATGTGTTAATGGTAGC 57.056 34.615 0.00 0.00 0.00 3.58
4049 4774 6.903883 AGTAGAAATGTGTTAATGGTAGCG 57.096 37.500 0.00 0.00 0.00 4.26
4050 4775 6.636705 AGTAGAAATGTGTTAATGGTAGCGA 58.363 36.000 0.00 0.00 0.00 4.93
4051 4776 5.796350 AGAAATGTGTTAATGGTAGCGAC 57.204 39.130 0.00 0.00 0.00 5.19
4052 4777 5.488341 AGAAATGTGTTAATGGTAGCGACT 58.512 37.500 0.00 0.00 0.00 4.18
4053 4778 5.938125 AGAAATGTGTTAATGGTAGCGACTT 59.062 36.000 0.00 0.00 0.00 3.01
4054 4779 5.796350 AATGTGTTAATGGTAGCGACTTC 57.204 39.130 0.00 0.00 0.00 3.01
4055 4780 4.260139 TGTGTTAATGGTAGCGACTTCA 57.740 40.909 0.00 0.00 0.00 3.02
4056 4781 4.827692 TGTGTTAATGGTAGCGACTTCAT 58.172 39.130 0.00 0.00 0.00 2.57
4057 4782 4.629634 TGTGTTAATGGTAGCGACTTCATG 59.370 41.667 0.00 0.00 0.00 3.07
4058 4783 3.621268 TGTTAATGGTAGCGACTTCATGC 59.379 43.478 0.00 0.00 0.00 4.06
4059 4784 1.290203 AATGGTAGCGACTTCATGCG 58.710 50.000 0.00 0.00 35.87 4.73
4060 4785 0.459899 ATGGTAGCGACTTCATGCGA 59.540 50.000 0.00 0.00 35.87 5.10
4061 4786 0.457853 TGGTAGCGACTTCATGCGAC 60.458 55.000 0.00 0.00 36.20 5.19
4062 4787 0.457853 GGTAGCGACTTCATGCGACA 60.458 55.000 0.00 0.00 38.29 4.35
4063 4788 1.560923 GTAGCGACTTCATGCGACAT 58.439 50.000 0.00 0.00 36.81 3.06
4064 4789 1.927174 GTAGCGACTTCATGCGACATT 59.073 47.619 0.00 0.00 36.81 2.71
4065 4790 1.442769 AGCGACTTCATGCGACATTT 58.557 45.000 0.00 0.00 35.87 2.32
4066 4791 1.394917 AGCGACTTCATGCGACATTTC 59.605 47.619 0.00 0.00 35.87 2.17
4099 4824 3.026431 ATCCCCGTGCGGATTCGTT 62.026 57.895 12.71 0.00 39.80 3.85
4117 4842 2.480419 CGTTCGAAGGCTGAATCAAACT 59.520 45.455 4.73 0.00 0.00 2.66
4118 4843 3.678072 CGTTCGAAGGCTGAATCAAACTA 59.322 43.478 4.73 0.00 0.00 2.24
4119 4844 4.434330 CGTTCGAAGGCTGAATCAAACTAC 60.434 45.833 4.73 0.00 0.00 2.73
4120 4845 4.537135 TCGAAGGCTGAATCAAACTACT 57.463 40.909 0.00 0.00 0.00 2.57
4121 4846 5.654603 TCGAAGGCTGAATCAAACTACTA 57.345 39.130 0.00 0.00 0.00 1.82
4123 4848 5.185249 TCGAAGGCTGAATCAAACTACTAGT 59.815 40.000 0.00 0.00 0.00 2.57
4124 4849 6.376299 TCGAAGGCTGAATCAAACTACTAGTA 59.624 38.462 1.89 1.89 0.00 1.82
4175 4900 2.478370 CGTTGGCATGATGGTGCTTTAG 60.478 50.000 0.00 0.00 44.45 1.85
4204 4932 1.469251 CGGCAAGTTAGCGAGCTTCTA 60.469 52.381 1.86 0.00 34.64 2.10
4260 4989 6.183361 TGACTGATTTCTCTGTACCTTTTCCA 60.183 38.462 0.00 0.00 34.11 3.53
4294 5026 4.818005 TGCATAATCAGAACACCTGCTATG 59.182 41.667 0.00 0.00 42.62 2.23
4295 5027 5.059161 GCATAATCAGAACACCTGCTATGA 58.941 41.667 13.37 0.00 42.62 2.15
4472 5245 2.671070 CATTGGGCCACGGAGTCT 59.329 61.111 5.23 0.00 41.61 3.24
4477 5250 2.722201 GGGCCACGGAGTCTTCGAT 61.722 63.158 7.76 0.00 41.61 3.59
4478 5251 1.218316 GGCCACGGAGTCTTCGATT 59.782 57.895 7.76 0.00 41.61 3.34
4480 5253 1.068741 GGCCACGGAGTCTTCGATTAT 59.931 52.381 7.76 0.00 41.61 1.28
4481 5254 2.295349 GGCCACGGAGTCTTCGATTATA 59.705 50.000 7.76 0.00 41.61 0.98
4482 5255 3.056749 GGCCACGGAGTCTTCGATTATAT 60.057 47.826 7.76 0.00 41.61 0.86
4483 5256 4.557205 GCCACGGAGTCTTCGATTATATT 58.443 43.478 7.76 0.00 41.61 1.28
4488 5271 6.144080 CACGGAGTCTTCGATTATATTTGTCC 59.856 42.308 7.76 0.00 41.61 4.02
4503 5286 5.603170 ATTTGTCCATTGGATGAATGACC 57.397 39.130 9.01 0.00 43.87 4.02
4508 5291 4.952335 GTCCATTGGATGAATGACCTTCTT 59.048 41.667 9.01 0.00 43.87 2.52
4510 5293 4.951715 CCATTGGATGAATGACCTTCTTGA 59.048 41.667 0.00 0.00 43.87 3.02
4526 5309 6.881602 ACCTTCTTGAGATAACATTTCTGACC 59.118 38.462 0.00 0.00 0.00 4.02
4532 5315 9.918630 CTTGAGATAACATTTCTGACCAAAAAT 57.081 29.630 0.00 0.00 0.00 1.82
4533 5316 9.912634 TTGAGATAACATTTCTGACCAAAAATC 57.087 29.630 0.00 0.00 0.00 2.17
4535 5318 9.346725 GAGATAACATTTCTGACCAAAAATCAC 57.653 33.333 0.00 0.00 0.00 3.06
4610 5393 2.438434 CATTGGGCCACGGAGTCC 60.438 66.667 5.23 0.00 41.61 3.85
4647 5533 6.764379 TCAAAGTGGTGAATAGTGACATGTA 58.236 36.000 0.00 0.00 0.00 2.29
4721 5618 9.616156 TGATTTTAGAAGGTAAACAGTACACAA 57.384 29.630 0.00 0.00 0.00 3.33
4733 5630 1.343465 AGTACACAAGAGGTTCACCGG 59.657 52.381 0.00 0.00 42.08 5.28
4734 5631 1.069668 GTACACAAGAGGTTCACCGGT 59.930 52.381 0.00 0.00 42.08 5.28
4761 5665 0.771756 CACGCATCAAACTTTGCACG 59.228 50.000 0.00 3.49 38.80 5.34
4767 5671 3.291585 CATCAAACTTTGCACGTCTGTC 58.708 45.455 0.00 0.00 0.00 3.51
4768 5672 1.326245 TCAAACTTTGCACGTCTGTCG 59.674 47.619 0.00 0.00 46.00 4.35
4787 5691 9.125906 GTCTGTCGTATACAACCATATTATCAC 57.874 37.037 3.32 0.00 37.74 3.06
4790 5694 8.782144 TGTCGTATACAACCATATTATCACGTA 58.218 33.333 3.32 0.00 34.29 3.57
4826 5730 7.920160 AACATGTTTTGGAACTTCAAAATGT 57.080 28.000 4.92 5.21 44.90 2.71
4827 5731 7.306205 ACATGTTTTGGAACTTCAAAATGTG 57.694 32.000 0.00 9.62 44.90 3.21
4828 5732 7.102346 ACATGTTTTGGAACTTCAAAATGTGA 58.898 30.769 16.61 0.00 44.90 3.58
4829 5733 7.769970 ACATGTTTTGGAACTTCAAAATGTGAT 59.230 29.630 16.61 4.34 44.90 3.06
4830 5734 8.614346 CATGTTTTGGAACTTCAAAATGTGATT 58.386 29.630 6.12 0.00 44.90 2.57
4831 5735 8.558973 TGTTTTGGAACTTCAAAATGTGATTT 57.441 26.923 6.12 0.00 44.90 2.17
4832 5736 9.007901 TGTTTTGGAACTTCAAAATGTGATTTT 57.992 25.926 6.12 0.00 44.90 1.82
4833 5737 9.489393 GTTTTGGAACTTCAAAATGTGATTTTC 57.511 29.630 6.12 0.00 44.90 2.29
4834 5738 8.783833 TTTGGAACTTCAAAATGTGATTTTCA 57.216 26.923 0.00 0.00 40.27 2.69
4835 5739 8.783833 TTGGAACTTCAAAATGTGATTTTCAA 57.216 26.923 0.00 0.00 40.27 2.69
4836 5740 8.783833 TGGAACTTCAAAATGTGATTTTCAAA 57.216 26.923 0.00 0.00 40.27 2.69
4885 5790 7.061360 ACACCTGTGTTCCAAAGTGACTTTG 62.061 44.000 26.66 26.66 44.11 2.77
4934 5839 7.308830 CCCCTTCATAGCTGCAAGATTTATTAC 60.309 40.741 1.02 0.00 34.07 1.89
4942 5847 6.986118 GCTGCAAGATTTATTACAGCAAAAG 58.014 36.000 7.85 0.00 45.17 2.27
4960 5865 6.930722 AGCAAAAGCAAACCATATAATATGGC 59.069 34.615 0.00 0.00 42.82 4.40
4964 5869 7.458409 AAGCAAACCATATAATATGGCAGAG 57.542 36.000 0.00 0.00 42.82 3.35
4967 5872 5.456921 AACCATATAATATGGCAGAGGGG 57.543 43.478 0.00 0.00 42.82 4.79
4979 5884 1.534235 AGAGGGGCATACCTAGGCG 60.534 63.158 9.30 0.00 42.10 5.52
4987 5892 1.935300 GCATACCTAGGCGTGGATTCG 60.935 57.143 9.30 0.00 0.00 3.34
5006 5911 3.709587 TCGTCATCCTTCTAGTTTCCCT 58.290 45.455 0.00 0.00 0.00 4.20
5014 5919 6.309389 TCCTTCTAGTTTCCCTCATTAACC 57.691 41.667 0.00 0.00 0.00 2.85
5021 5926 0.906775 TCCCTCATTAACCGGACCAC 59.093 55.000 9.46 0.00 0.00 4.16
5028 5934 5.272283 TCATTAACCGGACCACTATCTTC 57.728 43.478 9.46 0.00 0.00 2.87
5044 5950 7.201504 CCACTATCTTCTTCTATATGCATTGCG 60.202 40.741 3.54 0.00 0.00 4.85
5045 5951 6.815641 ACTATCTTCTTCTATATGCATTGCGG 59.184 38.462 3.54 0.00 0.00 5.69
5046 5952 4.318332 TCTTCTTCTATATGCATTGCGGG 58.682 43.478 3.54 0.00 0.00 6.13
5049 5955 4.065088 TCTTCTATATGCATTGCGGGAAC 58.935 43.478 3.54 0.00 0.00 3.62
5090 6013 3.283259 AGAGAAACCGGAATGGGATTC 57.717 47.619 9.46 0.79 44.64 2.52
5098 6021 2.356125 CCGGAATGGGATTCAGACAACT 60.356 50.000 0.00 0.00 41.03 3.16
5099 6022 3.118408 CCGGAATGGGATTCAGACAACTA 60.118 47.826 0.00 0.00 41.03 2.24
5119 6042 0.036105 TGATGCCACCACTGCTACTG 60.036 55.000 0.00 0.00 0.00 2.74
5131 6054 0.950555 TGCTACTGCCGCTGAAGTTG 60.951 55.000 4.02 0.00 38.71 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.711457 GGATTACCAATGCATTAATTACAATGC 58.289 33.333 12.53 15.92 46.06 3.56
22 23 9.206870 GGGATTACCAATGCATTAATTACAATG 57.793 33.333 12.53 0.00 39.85 2.82
46 47 9.353999 GCACTAGTTTTTCTTACAAATATTGGG 57.646 33.333 0.00 0.00 34.12 4.12
47 48 9.906660 TGCACTAGTTTTTCTTACAAATATTGG 57.093 29.630 0.00 0.00 34.12 3.16
58 59 9.683069 CACTCAATTAATGCACTAGTTTTTCTT 57.317 29.630 0.00 0.00 0.00 2.52
59 60 8.850156 ACACTCAATTAATGCACTAGTTTTTCT 58.150 29.630 0.00 0.00 0.00 2.52
60 61 9.463443 AACACTCAATTAATGCACTAGTTTTTC 57.537 29.630 0.00 0.00 0.00 2.29
61 62 9.816354 AAACACTCAATTAATGCACTAGTTTTT 57.184 25.926 0.00 0.00 0.00 1.94
62 63 9.463443 GAAACACTCAATTAATGCACTAGTTTT 57.537 29.630 0.00 0.00 0.00 2.43
63 64 8.850156 AGAAACACTCAATTAATGCACTAGTTT 58.150 29.630 0.00 0.00 0.00 2.66
64 65 8.396272 AGAAACACTCAATTAATGCACTAGTT 57.604 30.769 0.00 0.00 0.00 2.24
65 66 7.986085 AGAAACACTCAATTAATGCACTAGT 57.014 32.000 0.00 0.00 0.00 2.57
66 67 8.935844 TGTAGAAACACTCAATTAATGCACTAG 58.064 33.333 0.00 0.00 0.00 2.57
67 68 8.840833 TGTAGAAACACTCAATTAATGCACTA 57.159 30.769 0.00 0.00 0.00 2.74
68 69 7.744087 TGTAGAAACACTCAATTAATGCACT 57.256 32.000 0.00 0.00 0.00 4.40
69 70 8.795786 TTTGTAGAAACACTCAATTAATGCAC 57.204 30.769 0.00 0.00 34.61 4.57
70 71 8.629158 ACTTTGTAGAAACACTCAATTAATGCA 58.371 29.630 0.00 0.00 34.61 3.96
105 106 6.015519 CACCAATCAAGGTAGATGGTGAAAAA 60.016 38.462 16.18 0.00 42.87 1.94
106 107 5.476599 CACCAATCAAGGTAGATGGTGAAAA 59.523 40.000 16.18 0.00 42.87 2.29
107 108 5.009631 CACCAATCAAGGTAGATGGTGAAA 58.990 41.667 16.18 0.00 42.87 2.69
108 109 4.288366 TCACCAATCAAGGTAGATGGTGAA 59.712 41.667 20.22 7.21 44.14 3.18
109 110 3.843619 TCACCAATCAAGGTAGATGGTGA 59.156 43.478 19.00 19.00 44.47 4.02
110 111 4.080919 TCTCACCAATCAAGGTAGATGGTG 60.081 45.833 15.28 15.28 40.77 4.17
111 112 4.104086 TCTCACCAATCAAGGTAGATGGT 58.896 43.478 0.00 0.00 40.77 3.55
112 113 4.760530 TCTCACCAATCAAGGTAGATGG 57.239 45.455 0.00 0.00 40.77 3.51
113 114 7.636150 AAAATCTCACCAATCAAGGTAGATG 57.364 36.000 0.00 0.00 40.77 2.90
114 115 7.890127 TCAAAAATCTCACCAATCAAGGTAGAT 59.110 33.333 0.00 0.00 40.77 1.98
115 116 7.230747 TCAAAAATCTCACCAATCAAGGTAGA 58.769 34.615 0.00 0.00 40.77 2.59
116 117 7.362401 CCTCAAAAATCTCACCAATCAAGGTAG 60.362 40.741 0.00 0.00 40.77 3.18
117 118 6.434028 CCTCAAAAATCTCACCAATCAAGGTA 59.566 38.462 0.00 0.00 40.77 3.08
118 119 5.244626 CCTCAAAAATCTCACCAATCAAGGT 59.755 40.000 0.00 0.00 44.48 3.50
119 120 5.244626 ACCTCAAAAATCTCACCAATCAAGG 59.755 40.000 0.00 0.00 0.00 3.61
120 121 6.016024 TCACCTCAAAAATCTCACCAATCAAG 60.016 38.462 0.00 0.00 0.00 3.02
121 122 5.832595 TCACCTCAAAAATCTCACCAATCAA 59.167 36.000 0.00 0.00 0.00 2.57
122 123 5.384336 TCACCTCAAAAATCTCACCAATCA 58.616 37.500 0.00 0.00 0.00 2.57
123 124 5.620879 GCTCACCTCAAAAATCTCACCAATC 60.621 44.000 0.00 0.00 0.00 2.67
124 125 4.219288 GCTCACCTCAAAAATCTCACCAAT 59.781 41.667 0.00 0.00 0.00 3.16
125 126 3.569701 GCTCACCTCAAAAATCTCACCAA 59.430 43.478 0.00 0.00 0.00 3.67
126 127 3.149196 GCTCACCTCAAAAATCTCACCA 58.851 45.455 0.00 0.00 0.00 4.17
127 128 2.489722 GGCTCACCTCAAAAATCTCACC 59.510 50.000 0.00 0.00 0.00 4.02
128 129 2.489722 GGGCTCACCTCAAAAATCTCAC 59.510 50.000 0.00 0.00 35.85 3.51
129 130 2.795329 GGGCTCACCTCAAAAATCTCA 58.205 47.619 0.00 0.00 35.85 3.27
141 142 2.994186 TTCGGTTTATAGGGCTCACC 57.006 50.000 0.00 0.00 40.67 4.02
142 143 4.120589 CTCTTTCGGTTTATAGGGCTCAC 58.879 47.826 0.00 0.00 0.00 3.51
143 144 4.028131 TCTCTTTCGGTTTATAGGGCTCA 58.972 43.478 0.00 0.00 0.00 4.26
144 145 4.341520 TCTCTCTTTCGGTTTATAGGGCTC 59.658 45.833 0.00 0.00 0.00 4.70
145 146 4.287552 TCTCTCTTTCGGTTTATAGGGCT 58.712 43.478 0.00 0.00 0.00 5.19
146 147 4.341520 TCTCTCTCTTTCGGTTTATAGGGC 59.658 45.833 0.00 0.00 0.00 5.19
147 148 6.127423 TGTTCTCTCTCTTTCGGTTTATAGGG 60.127 42.308 0.00 0.00 0.00 3.53
148 149 6.864342 TGTTCTCTCTCTTTCGGTTTATAGG 58.136 40.000 0.00 0.00 0.00 2.57
149 150 8.934507 AATGTTCTCTCTCTTTCGGTTTATAG 57.065 34.615 0.00 0.00 0.00 1.31
151 152 9.535878 GATAATGTTCTCTCTCTTTCGGTTTAT 57.464 33.333 0.00 0.00 0.00 1.40
152 153 7.701078 CGATAATGTTCTCTCTCTTTCGGTTTA 59.299 37.037 0.00 0.00 0.00 2.01
153 154 6.531948 CGATAATGTTCTCTCTCTTTCGGTTT 59.468 38.462 0.00 0.00 0.00 3.27
154 155 6.037098 CGATAATGTTCTCTCTCTTTCGGTT 58.963 40.000 0.00 0.00 0.00 4.44
155 156 5.450688 CCGATAATGTTCTCTCTCTTTCGGT 60.451 44.000 0.00 0.00 0.00 4.69
156 157 4.979197 CCGATAATGTTCTCTCTCTTTCGG 59.021 45.833 0.00 0.00 0.00 4.30
157 158 5.583495 ACCGATAATGTTCTCTCTCTTTCG 58.417 41.667 0.00 0.00 0.00 3.46
158 159 5.980715 GGACCGATAATGTTCTCTCTCTTTC 59.019 44.000 0.00 0.00 0.00 2.62
159 160 5.422331 TGGACCGATAATGTTCTCTCTCTTT 59.578 40.000 0.00 0.00 0.00 2.52
160 161 4.956700 TGGACCGATAATGTTCTCTCTCTT 59.043 41.667 0.00 0.00 0.00 2.85
161 162 4.537751 TGGACCGATAATGTTCTCTCTCT 58.462 43.478 0.00 0.00 0.00 3.10
162 163 4.920640 TGGACCGATAATGTTCTCTCTC 57.079 45.455 0.00 0.00 0.00 3.20
163 164 5.878406 AATGGACCGATAATGTTCTCTCT 57.122 39.130 0.00 0.00 0.00 3.10
164 165 6.017852 GGAAAATGGACCGATAATGTTCTCTC 60.018 42.308 0.00 0.00 0.00 3.20
165 166 5.823045 GGAAAATGGACCGATAATGTTCTCT 59.177 40.000 0.00 0.00 0.00 3.10
166 167 5.588648 TGGAAAATGGACCGATAATGTTCTC 59.411 40.000 0.00 0.00 0.00 2.87
167 168 5.505780 TGGAAAATGGACCGATAATGTTCT 58.494 37.500 0.00 0.00 0.00 3.01
168 169 5.828299 TGGAAAATGGACCGATAATGTTC 57.172 39.130 0.00 0.00 0.00 3.18
169 170 5.451798 GCATGGAAAATGGACCGATAATGTT 60.452 40.000 0.00 0.00 0.00 2.71
170 171 4.037923 GCATGGAAAATGGACCGATAATGT 59.962 41.667 0.00 0.00 0.00 2.71
171 172 4.279169 AGCATGGAAAATGGACCGATAATG 59.721 41.667 0.00 0.00 0.00 1.90
172 173 4.473444 AGCATGGAAAATGGACCGATAAT 58.527 39.130 0.00 0.00 0.00 1.28
173 174 3.897239 AGCATGGAAAATGGACCGATAA 58.103 40.909 0.00 0.00 0.00 1.75
174 175 3.576078 AGCATGGAAAATGGACCGATA 57.424 42.857 0.00 0.00 0.00 2.92
175 176 2.442236 AGCATGGAAAATGGACCGAT 57.558 45.000 0.00 0.00 0.00 4.18
176 177 2.238646 AGTAGCATGGAAAATGGACCGA 59.761 45.455 0.00 0.00 0.00 4.69
177 178 2.614057 GAGTAGCATGGAAAATGGACCG 59.386 50.000 0.00 0.00 0.00 4.79
178 179 2.952310 GGAGTAGCATGGAAAATGGACC 59.048 50.000 0.00 0.00 0.00 4.46
179 180 2.952310 GGGAGTAGCATGGAAAATGGAC 59.048 50.000 0.00 0.00 0.00 4.02
180 181 2.852449 AGGGAGTAGCATGGAAAATGGA 59.148 45.455 0.00 0.00 0.00 3.41
181 182 3.217626 GAGGGAGTAGCATGGAAAATGG 58.782 50.000 0.00 0.00 0.00 3.16
182 183 3.217626 GGAGGGAGTAGCATGGAAAATG 58.782 50.000 0.00 0.00 0.00 2.32
183 184 2.158755 CGGAGGGAGTAGCATGGAAAAT 60.159 50.000 0.00 0.00 0.00 1.82
184 185 1.209504 CGGAGGGAGTAGCATGGAAAA 59.790 52.381 0.00 0.00 0.00 2.29
185 186 0.830648 CGGAGGGAGTAGCATGGAAA 59.169 55.000 0.00 0.00 0.00 3.13
186 187 0.325296 ACGGAGGGAGTAGCATGGAA 60.325 55.000 0.00 0.00 0.00 3.53
187 188 0.755698 GACGGAGGGAGTAGCATGGA 60.756 60.000 0.00 0.00 0.00 3.41
188 189 0.757188 AGACGGAGGGAGTAGCATGG 60.757 60.000 0.00 0.00 0.00 3.66
189 190 0.671251 GAGACGGAGGGAGTAGCATG 59.329 60.000 0.00 0.00 0.00 4.06
190 191 0.553819 AGAGACGGAGGGAGTAGCAT 59.446 55.000 0.00 0.00 0.00 3.79
191 192 0.331954 AAGAGACGGAGGGAGTAGCA 59.668 55.000 0.00 0.00 0.00 3.49
192 193 1.948834 GTAAGAGACGGAGGGAGTAGC 59.051 57.143 0.00 0.00 0.00 3.58
193 194 3.564053 AGTAAGAGACGGAGGGAGTAG 57.436 52.381 0.00 0.00 0.00 2.57
194 195 6.556495 TCTTATAGTAAGAGACGGAGGGAGTA 59.444 42.308 0.00 0.00 0.00 2.59
195 196 5.369110 TCTTATAGTAAGAGACGGAGGGAGT 59.631 44.000 0.00 0.00 0.00 3.85
196 197 5.867330 TCTTATAGTAAGAGACGGAGGGAG 58.133 45.833 0.00 0.00 0.00 4.30
197 198 5.901413 TCTTATAGTAAGAGACGGAGGGA 57.099 43.478 0.00 0.00 0.00 4.20
198 199 8.810990 AATATCTTATAGTAAGAGACGGAGGG 57.189 38.462 5.74 0.00 0.00 4.30
253 254 9.469239 GCTTCAAAACGTAACAGTGTATATTAC 57.531 33.333 0.00 0.00 0.00 1.89
254 255 8.374728 CGCTTCAAAACGTAACAGTGTATATTA 58.625 33.333 0.00 0.00 0.00 0.98
255 256 7.095523 ACGCTTCAAAACGTAACAGTGTATATT 60.096 33.333 0.00 0.00 41.48 1.28
258 259 4.508861 ACGCTTCAAAACGTAACAGTGTAT 59.491 37.500 0.00 0.00 41.48 2.29
316 320 2.728839 CACACACACACAACAAACCAAC 59.271 45.455 0.00 0.00 0.00 3.77
332 336 2.828095 GGCCTGCACACACACACA 60.828 61.111 0.00 0.00 0.00 3.72
456 460 2.740714 GCAGTAGGCCTTGTTCGCG 61.741 63.158 12.58 0.00 36.11 5.87
483 487 2.787249 CAACAGATGCCGCCTTCG 59.213 61.111 0.00 0.00 0.00 3.79
520 524 1.355066 CCTTCGTCGCCAGCTTCTTC 61.355 60.000 0.00 0.00 0.00 2.87
522 526 2.262915 CCTTCGTCGCCAGCTTCT 59.737 61.111 0.00 0.00 0.00 2.85
523 527 2.048127 ACCTTCGTCGCCAGCTTC 60.048 61.111 0.00 0.00 0.00 3.86
525 529 4.379243 CCACCTTCGTCGCCAGCT 62.379 66.667 0.00 0.00 0.00 4.24
526 530 4.373116 TCCACCTTCGTCGCCAGC 62.373 66.667 0.00 0.00 0.00 4.85
527 531 2.432628 GTCCACCTTCGTCGCCAG 60.433 66.667 0.00 0.00 0.00 4.85
528 532 3.228017 TGTCCACCTTCGTCGCCA 61.228 61.111 0.00 0.00 0.00 5.69
529 533 2.737376 GTGTCCACCTTCGTCGCC 60.737 66.667 0.00 0.00 0.00 5.54
537 541 1.461091 ATGACGACACGTGTCCACCT 61.461 55.000 36.01 22.05 41.37 4.00
540 544 0.601057 ATGATGACGACACGTGTCCA 59.399 50.000 36.01 29.61 41.37 4.02
571 575 2.306847 ACTGATTCACGGTTGGCTTTT 58.693 42.857 0.00 0.00 33.91 2.27
585 589 6.380079 AGGGAATTGACTGACTAACTGATT 57.620 37.500 0.00 0.00 0.00 2.57
642 646 1.075542 TAAACAATGCAGGCTCGACG 58.924 50.000 0.00 0.00 0.00 5.12
668 672 5.356882 TGACCTTGTTATTTTCTTCTGCG 57.643 39.130 0.00 0.00 0.00 5.18
669 673 5.473504 TCCTGACCTTGTTATTTTCTTCTGC 59.526 40.000 0.00 0.00 0.00 4.26
670 674 6.936900 TCTCCTGACCTTGTTATTTTCTTCTG 59.063 38.462 0.00 0.00 0.00 3.02
671 675 7.079451 TCTCCTGACCTTGTTATTTTCTTCT 57.921 36.000 0.00 0.00 0.00 2.85
672 676 7.745620 TTCTCCTGACCTTGTTATTTTCTTC 57.254 36.000 0.00 0.00 0.00 2.87
673 677 8.533569 TTTTCTCCTGACCTTGTTATTTTCTT 57.466 30.769 0.00 0.00 0.00 2.52
728 736 1.567537 CGTTGGTACTTGGCACACG 59.432 57.895 0.00 0.00 39.29 4.49
809 817 6.125419 GGTAACGAGTTCGACTTTTCTTTTC 58.875 40.000 8.72 0.00 43.02 2.29
989 1020 2.489073 GGATGGTCTCTCTCTCCCTCTC 60.489 59.091 0.00 0.00 0.00 3.20
994 1025 1.408969 GTGGGATGGTCTCTCTCTCC 58.591 60.000 0.00 0.00 0.00 3.71
1078 1109 1.809209 GACTCCTCGAAGCTGCTGC 60.809 63.158 1.35 7.62 40.05 5.25
1079 1110 1.153667 GGACTCCTCGAAGCTGCTG 60.154 63.158 1.35 0.00 0.00 4.41
1264 1320 0.459585 CGCTAAGGAACTAAGCGCCA 60.460 55.000 2.29 0.00 38.49 5.69
1380 1459 2.526120 GCGCCAATCTACTCGGCAC 61.526 63.158 0.00 0.00 46.60 5.01
1381 1460 2.202878 GCGCCAATCTACTCGGCA 60.203 61.111 0.00 0.00 46.60 5.69
1382 1461 2.967615 GGCGCCAATCTACTCGGC 60.968 66.667 24.80 0.00 42.64 5.54
1383 1462 1.300233 GAGGCGCCAATCTACTCGG 60.300 63.158 31.54 0.00 0.00 4.63
1384 1463 0.179111 TTGAGGCGCCAATCTACTCG 60.179 55.000 31.54 0.00 0.00 4.18
1389 1468 1.078143 GACCTTGAGGCGCCAATCT 60.078 57.895 31.54 7.63 39.32 2.40
1445 1524 3.080765 ATGGTCGATCGGGGCACA 61.081 61.111 16.41 7.82 0.00 4.57
1545 1669 4.899239 GCCGGCTCGTGGAGGATG 62.899 72.222 22.15 0.00 0.00 3.51
1635 1767 4.552767 GCAATCATAACCGGATCGAACAAG 60.553 45.833 9.46 0.00 0.00 3.16
1644 1776 4.075682 TGAACAAAGCAATCATAACCGGA 58.924 39.130 9.46 0.00 0.00 5.14
1682 1814 1.654220 CAGACAACCGGCCAAACTG 59.346 57.895 0.00 1.25 0.00 3.16
1683 1815 2.193536 GCAGACAACCGGCCAAACT 61.194 57.895 0.00 0.00 0.00 2.66
1686 1820 1.454847 AAAGCAGACAACCGGCCAA 60.455 52.632 0.00 0.00 36.60 4.52
1725 1860 5.747197 GCCAATTCATAGCAGACAATCAAAG 59.253 40.000 0.00 0.00 0.00 2.77
1728 1863 3.633525 GGCCAATTCATAGCAGACAATCA 59.366 43.478 0.00 0.00 0.00 2.57
1730 1865 2.961062 GGGCCAATTCATAGCAGACAAT 59.039 45.455 4.39 0.00 0.00 2.71
1734 1869 3.386932 AAAGGGCCAATTCATAGCAGA 57.613 42.857 6.18 0.00 0.00 4.26
1735 1870 4.402155 TGTAAAAGGGCCAATTCATAGCAG 59.598 41.667 6.18 0.00 0.00 4.24
1736 1871 4.348486 TGTAAAAGGGCCAATTCATAGCA 58.652 39.130 6.18 0.00 0.00 3.49
1737 1872 5.337578 TTGTAAAAGGGCCAATTCATAGC 57.662 39.130 6.18 0.00 0.00 2.97
1885 2491 6.346896 TGCGACTCAGAGATAGTCTAGTTAA 58.653 40.000 3.79 0.00 41.02 2.01
1886 2492 5.915175 TGCGACTCAGAGATAGTCTAGTTA 58.085 41.667 3.79 0.00 41.02 2.24
1887 2493 4.771903 TGCGACTCAGAGATAGTCTAGTT 58.228 43.478 3.79 0.00 41.02 2.24
1888 2494 4.409718 TGCGACTCAGAGATAGTCTAGT 57.590 45.455 3.79 0.00 41.02 2.57
1889 2495 5.743026 TTTGCGACTCAGAGATAGTCTAG 57.257 43.478 3.79 0.00 41.02 2.43
1890 2496 6.510879 TTTTTGCGACTCAGAGATAGTCTA 57.489 37.500 3.79 0.00 41.02 2.59
1891 2497 5.392767 TTTTTGCGACTCAGAGATAGTCT 57.607 39.130 3.79 0.00 41.02 3.24
1949 2557 6.787382 TTGGTTTACAATAAAAGCCCGGAGG 61.787 44.000 0.73 0.00 40.60 4.30
1953 2561 5.290386 TGTTTGGTTTACAATAAAAGCCCG 58.710 37.500 0.00 0.00 39.21 6.13
1960 2568 8.001881 TCTTGCTTCTGTTTGGTTTACAATAA 57.998 30.769 0.00 0.00 39.21 1.40
2119 2728 6.648725 AGCAGATTGTCACGTAAGATAAAC 57.351 37.500 0.00 0.00 43.62 2.01
2252 2864 9.638239 GAGCAGGAAACACATATTAAAAATCAA 57.362 29.630 0.00 0.00 0.00 2.57
2316 2928 3.458118 ACTTGTAATGTGGCCAGCCTATA 59.542 43.478 5.11 0.00 36.94 1.31
2497 3109 5.805994 GTGCAAAACGAGTTAGCTAGTAGAT 59.194 40.000 0.00 0.00 30.36 1.98
2499 3111 4.326548 GGTGCAAAACGAGTTAGCTAGTAG 59.673 45.833 12.31 0.00 30.36 2.57
2501 3113 3.064931 GGTGCAAAACGAGTTAGCTAGT 58.935 45.455 12.31 0.00 31.84 2.57
2503 3115 3.064207 CAGGTGCAAAACGAGTTAGCTA 58.936 45.455 12.31 0.00 0.00 3.32
2504 3116 1.873591 CAGGTGCAAAACGAGTTAGCT 59.126 47.619 12.31 0.00 0.00 3.32
2627 3242 8.643324 ACTTATAACTCGCATAGAAAGGAGATT 58.357 33.333 0.00 0.00 0.00 2.40
2657 3272 5.176223 CCAATTGTGTCAGCAAGATTTCAAC 59.824 40.000 4.43 0.00 0.00 3.18
2665 3280 4.516698 AGAAGTACCAATTGTGTCAGCAAG 59.483 41.667 4.43 0.00 0.00 4.01
2736 3360 6.231211 ACTGTCCAACAAACTTATGGAGTAG 58.769 40.000 0.00 0.00 43.59 2.57
2747 3371 0.454196 ACGGCAACTGTCCAACAAAC 59.546 50.000 0.00 0.00 0.00 2.93
2790 3414 2.289010 GGGGAATTTCCTTGTGCAACAG 60.289 50.000 14.95 0.00 40.28 3.16
2812 3436 8.691797 GCCCCTGATATAAAAACATAACAAAGA 58.308 33.333 0.00 0.00 0.00 2.52
2854 3480 8.967664 ATAAATATGAAAGCAAAACATGGCAT 57.032 26.923 0.00 0.00 0.00 4.40
2864 3490 9.177608 AGTACAGCAGAATAAATATGAAAGCAA 57.822 29.630 0.00 0.00 0.00 3.91
2871 3497 9.229784 CAAGCAAAGTACAGCAGAATAAATATG 57.770 33.333 0.00 0.00 0.00 1.78
2953 3583 4.822026 ACGTACATCCTCTTTTCTGGAAG 58.178 43.478 0.00 0.00 35.81 3.46
2954 3584 4.884668 ACGTACATCCTCTTTTCTGGAA 57.115 40.909 0.00 0.00 35.81 3.53
3144 3775 4.790790 ACCAAAGGGGAGAATAGTTGAGAT 59.209 41.667 0.00 0.00 41.15 2.75
3164 3795 3.258971 TGATCATAATCGTGTGCACCA 57.741 42.857 15.69 0.00 34.39 4.17
3202 3833 7.939782 TCTTTGATCTGCTGTATTGAAAACAA 58.060 30.769 0.00 0.00 0.00 2.83
3204 3835 8.976986 AATCTTTGATCTGCTGTATTGAAAAC 57.023 30.769 0.00 0.00 0.00 2.43
3240 3874 5.662674 AGACTCAAGTGGGAACATAGTAC 57.337 43.478 0.00 0.00 46.14 2.73
3332 3992 6.440647 TGAGGAAGGACACATAGACTTAACAT 59.559 38.462 0.00 0.00 0.00 2.71
3333 3993 5.778241 TGAGGAAGGACACATAGACTTAACA 59.222 40.000 0.00 0.00 0.00 2.41
3439 4101 7.606858 ATGCATGAAATATATGAGAACCTCG 57.393 36.000 0.00 0.00 32.35 4.63
3446 4108 9.923143 AAACATCCAATGCATGAAATATATGAG 57.077 29.630 0.00 0.00 0.00 2.90
3486 4148 3.248266 GAATGATGCTCAAGGTGCAAAC 58.752 45.455 0.00 0.00 44.01 2.93
3494 4156 5.638783 GAAGTCAAAGGAATGATGCTCAAG 58.361 41.667 0.00 0.00 0.00 3.02
3504 4181 2.286365 TTGCCCGAAGTCAAAGGAAT 57.714 45.000 0.00 0.00 0.00 3.01
3516 4193 1.529226 AATCACGATTGTTTGCCCGA 58.471 45.000 0.00 0.00 0.00 5.14
3646 4325 8.426881 AAGCTAAAAGAATGTTACTAGCTAGC 57.573 34.615 20.91 6.62 38.53 3.42
3648 4327 9.379791 GGAAAGCTAAAAGAATGTTACTAGCTA 57.620 33.333 6.97 0.00 38.53 3.32
3649 4328 8.103935 AGGAAAGCTAAAAGAATGTTACTAGCT 58.896 33.333 0.00 0.00 40.85 3.32
3662 4341 9.696917 AAATACATGTCAAAGGAAAGCTAAAAG 57.303 29.630 0.00 0.00 0.00 2.27
3677 4356 5.050644 ACGTGTCGACTAAATACATGTCA 57.949 39.130 17.92 0.00 38.64 3.58
3757 4436 3.393800 TCAAGCAAGTGTAGAAGAGCAC 58.606 45.455 0.00 0.00 35.98 4.40
3762 4441 7.389053 AGGTTAGAAATCAAGCAAGTGTAGAAG 59.611 37.037 0.00 0.00 0.00 2.85
3865 4546 6.816140 TCTCGCAACAAAACACATCTATCATA 59.184 34.615 0.00 0.00 0.00 2.15
3894 4575 4.446051 GGAAGTTCAGCTAATATCAGCGTC 59.554 45.833 5.01 0.00 46.52 5.19
3938 4619 5.535406 GGTGATAGTGCATACTACTACAGGT 59.465 44.000 0.00 0.00 41.92 4.00
3959 4684 0.813610 TTCACACAGGTTCTGCGGTG 60.814 55.000 11.57 11.57 39.66 4.94
3964 4689 2.163010 GGCATCATTCACACAGGTTCTG 59.837 50.000 0.00 0.00 37.52 3.02
3969 4694 1.471287 CACAGGCATCATTCACACAGG 59.529 52.381 0.00 0.00 0.00 4.00
3994 4719 5.601662 TCAGAATTCACATCTAACGGGATC 58.398 41.667 8.44 0.00 0.00 3.36
4023 4748 7.705325 CGCTACCATTAACACATTTCTACTACT 59.295 37.037 0.00 0.00 0.00 2.57
4025 4750 7.703621 GTCGCTACCATTAACACATTTCTACTA 59.296 37.037 0.00 0.00 0.00 1.82
4026 4751 6.534079 GTCGCTACCATTAACACATTTCTACT 59.466 38.462 0.00 0.00 0.00 2.57
4027 4752 6.534079 AGTCGCTACCATTAACACATTTCTAC 59.466 38.462 0.00 0.00 0.00 2.59
4028 4753 6.636705 AGTCGCTACCATTAACACATTTCTA 58.363 36.000 0.00 0.00 0.00 2.10
4029 4754 5.488341 AGTCGCTACCATTAACACATTTCT 58.512 37.500 0.00 0.00 0.00 2.52
4030 4755 5.796350 AGTCGCTACCATTAACACATTTC 57.204 39.130 0.00 0.00 0.00 2.17
4031 4756 5.703592 TGAAGTCGCTACCATTAACACATTT 59.296 36.000 0.00 0.00 0.00 2.32
4032 4757 5.242434 TGAAGTCGCTACCATTAACACATT 58.758 37.500 0.00 0.00 0.00 2.71
4033 4758 4.827692 TGAAGTCGCTACCATTAACACAT 58.172 39.130 0.00 0.00 0.00 3.21
4034 4759 4.260139 TGAAGTCGCTACCATTAACACA 57.740 40.909 0.00 0.00 0.00 3.72
4035 4760 4.494199 GCATGAAGTCGCTACCATTAACAC 60.494 45.833 0.00 0.00 0.00 3.32
4036 4761 3.621268 GCATGAAGTCGCTACCATTAACA 59.379 43.478 0.00 0.00 0.00 2.41
4037 4762 3.302480 CGCATGAAGTCGCTACCATTAAC 60.302 47.826 0.00 0.00 0.00 2.01
4038 4763 2.863740 CGCATGAAGTCGCTACCATTAA 59.136 45.455 0.00 0.00 0.00 1.40
4039 4764 2.100087 TCGCATGAAGTCGCTACCATTA 59.900 45.455 0.00 0.00 0.00 1.90
4040 4765 1.134818 TCGCATGAAGTCGCTACCATT 60.135 47.619 0.00 0.00 0.00 3.16
4041 4766 0.459899 TCGCATGAAGTCGCTACCAT 59.540 50.000 0.00 0.00 0.00 3.55
4042 4767 0.457853 GTCGCATGAAGTCGCTACCA 60.458 55.000 0.00 0.00 0.00 3.25
4043 4768 0.457853 TGTCGCATGAAGTCGCTACC 60.458 55.000 0.00 0.00 0.00 3.18
4044 4769 1.560923 ATGTCGCATGAAGTCGCTAC 58.439 50.000 0.00 0.00 0.00 3.58
4045 4770 2.293677 AATGTCGCATGAAGTCGCTA 57.706 45.000 0.00 0.00 0.00 4.26
4046 4771 1.394917 GAAATGTCGCATGAAGTCGCT 59.605 47.619 0.00 0.00 0.00 4.93
4047 4772 1.802839 GAAATGTCGCATGAAGTCGC 58.197 50.000 0.00 0.00 0.00 5.19
4048 4773 2.063330 CGAAATGTCGCATGAAGTCG 57.937 50.000 0.00 0.00 41.08 4.18
4059 4784 1.906966 CAACAATCTGCGCGAAATGTC 59.093 47.619 12.10 0.00 0.00 3.06
4060 4785 1.535028 TCAACAATCTGCGCGAAATGT 59.465 42.857 12.10 1.36 0.00 2.71
4061 4786 2.245795 TCAACAATCTGCGCGAAATG 57.754 45.000 12.10 0.58 0.00 2.32
4062 4787 2.987413 TTCAACAATCTGCGCGAAAT 57.013 40.000 12.10 0.00 0.00 2.17
4063 4788 2.414029 GGATTCAACAATCTGCGCGAAA 60.414 45.455 12.10 0.00 38.85 3.46
4064 4789 1.130373 GGATTCAACAATCTGCGCGAA 59.870 47.619 12.10 0.00 38.85 4.70
4065 4790 0.726827 GGATTCAACAATCTGCGCGA 59.273 50.000 12.10 3.27 38.85 5.87
4066 4791 0.248215 GGGATTCAACAATCTGCGCG 60.248 55.000 0.00 0.00 38.85 6.86
4067 4792 0.101219 GGGGATTCAACAATCTGCGC 59.899 55.000 0.00 0.00 38.85 6.09
4068 4793 0.378257 CGGGGATTCAACAATCTGCG 59.622 55.000 0.00 0.00 38.85 5.18
4069 4794 1.133025 CACGGGGATTCAACAATCTGC 59.867 52.381 0.00 0.00 38.85 4.26
4070 4795 1.133025 GCACGGGGATTCAACAATCTG 59.867 52.381 0.00 0.00 38.85 2.90
4071 4796 1.463674 GCACGGGGATTCAACAATCT 58.536 50.000 0.00 0.00 38.85 2.40
4072 4797 0.098728 CGCACGGGGATTCAACAATC 59.901 55.000 0.00 0.00 38.19 2.67
4073 4798 1.312371 CCGCACGGGGATTCAACAAT 61.312 55.000 0.00 0.00 0.00 2.71
4099 4824 4.537135 AGTAGTTTGATTCAGCCTTCGA 57.463 40.909 0.00 0.00 0.00 3.71
4117 4842 8.640063 TTTCGTGCCAAGGATATATACTAGTA 57.360 34.615 4.77 4.77 0.00 1.82
4118 4843 7.450634 TCTTTCGTGCCAAGGATATATACTAGT 59.549 37.037 0.00 0.00 0.00 2.57
4119 4844 7.827701 TCTTTCGTGCCAAGGATATATACTAG 58.172 38.462 0.00 0.00 0.00 2.57
4120 4845 7.770366 TCTTTCGTGCCAAGGATATATACTA 57.230 36.000 0.00 0.00 0.00 1.82
4121 4846 6.665992 TCTTTCGTGCCAAGGATATATACT 57.334 37.500 0.00 0.00 0.00 2.12
4123 4848 8.208224 TCTTTTCTTTCGTGCCAAGGATATATA 58.792 33.333 0.00 0.00 0.00 0.86
4124 4849 7.012421 GTCTTTTCTTTCGTGCCAAGGATATAT 59.988 37.037 0.00 0.00 0.00 0.86
4175 4900 1.202076 GCTAACTTGCCGATCAACAGC 60.202 52.381 0.00 0.00 0.00 4.40
4235 4964 6.183361 TGGAAAAGGTACAGAGAAATCAGTCA 60.183 38.462 0.00 0.00 0.00 3.41
4237 4966 6.187727 TGGAAAAGGTACAGAGAAATCAGT 57.812 37.500 0.00 0.00 0.00 3.41
4308 5043 6.947464 TCTAGCAGAGCCAAAATAAGTAACT 58.053 36.000 0.00 0.00 0.00 2.24
4309 5044 7.611213 TTCTAGCAGAGCCAAAATAAGTAAC 57.389 36.000 0.00 0.00 0.00 2.50
4312 5047 8.844244 CAATATTCTAGCAGAGCCAAAATAAGT 58.156 33.333 0.00 0.00 0.00 2.24
4313 5048 7.806960 GCAATATTCTAGCAGAGCCAAAATAAG 59.193 37.037 0.00 0.00 0.00 1.73
4314 5049 7.255590 GGCAATATTCTAGCAGAGCCAAAATAA 60.256 37.037 0.00 0.00 40.50 1.40
4315 5050 6.207417 GGCAATATTCTAGCAGAGCCAAAATA 59.793 38.462 0.00 0.00 40.50 1.40
4316 5051 5.010415 GGCAATATTCTAGCAGAGCCAAAAT 59.990 40.000 0.00 0.00 40.50 1.82
4358 5093 2.999185 TTGAAAAGGGGCCAGAGATT 57.001 45.000 4.39 0.00 0.00 2.40
4360 5095 1.499007 ACTTTGAAAAGGGGCCAGAGA 59.501 47.619 4.39 0.00 40.31 3.10
4472 5245 8.916628 TCATCCAATGGACAAATATAATCGAA 57.083 30.769 3.09 0.00 32.98 3.71
4477 5250 8.859090 GGTCATTCATCCAATGGACAAATATAA 58.141 33.333 3.09 0.00 42.18 0.98
4478 5251 8.226810 AGGTCATTCATCCAATGGACAAATATA 58.773 33.333 3.09 0.00 42.18 0.86
4480 5253 6.434302 AGGTCATTCATCCAATGGACAAATA 58.566 36.000 3.09 0.00 42.18 1.40
4481 5254 5.274822 AGGTCATTCATCCAATGGACAAAT 58.725 37.500 3.09 4.58 42.18 2.32
4482 5255 4.676109 AGGTCATTCATCCAATGGACAAA 58.324 39.130 3.09 1.99 42.18 2.83
4483 5256 4.320546 AGGTCATTCATCCAATGGACAA 57.679 40.909 3.09 0.36 42.18 3.18
4488 5271 5.884232 TCTCAAGAAGGTCATTCATCCAATG 59.116 40.000 0.00 0.00 43.15 2.82
4503 5286 7.912056 TGGTCAGAAATGTTATCTCAAGAAG 57.088 36.000 0.00 0.00 0.00 2.85
4508 5291 9.076781 TGATTTTTGGTCAGAAATGTTATCTCA 57.923 29.630 4.52 0.00 0.00 3.27
4510 5293 9.082313 AGTGATTTTTGGTCAGAAATGTTATCT 57.918 29.630 4.52 0.00 0.00 1.98
4526 5309 2.069273 AGCGGAGTCGAGTGATTTTTG 58.931 47.619 0.00 0.00 39.00 2.44
4532 5315 3.062466 CCCAGCGGAGTCGAGTGA 61.062 66.667 0.00 0.00 39.00 3.41
4533 5316 4.135153 CCCCAGCGGAGTCGAGTG 62.135 72.222 0.00 0.00 39.00 3.51
4535 5318 2.835431 ATCCCCAGCGGAGTCGAG 60.835 66.667 0.00 0.00 46.60 4.04
4610 5393 5.474532 TCACCACTTTGAATCTTCCATCAAG 59.525 40.000 0.00 0.00 36.93 3.02
4622 5405 6.061441 ACATGTCACTATTCACCACTTTGAA 58.939 36.000 0.00 0.00 39.79 2.69
4624 5407 5.947228 ACATGTCACTATTCACCACTTTG 57.053 39.130 0.00 0.00 0.00 2.77
4625 5408 8.458573 TTTTACATGTCACTATTCACCACTTT 57.541 30.769 0.00 0.00 0.00 2.66
4647 5533 7.096925 GCGCACGTGTTAACTTACTTTATTTTT 60.097 33.333 18.38 0.00 0.00 1.94
4656 5551 2.725723 TGTAGCGCACGTGTTAACTTAC 59.274 45.455 18.38 11.46 0.00 2.34
4663 5558 3.881780 TTTTTATGTAGCGCACGTGTT 57.118 38.095 18.38 6.02 0.00 3.32
4693 5588 8.219105 GTGTACTGTTTACCTTCTAAAATCACG 58.781 37.037 0.00 0.00 0.00 4.35
4703 5600 5.608449 ACCTCTTGTGTACTGTTTACCTTC 58.392 41.667 0.00 0.00 0.00 3.46
4761 5665 9.125906 GTGATAATATGGTTGTATACGACAGAC 57.874 37.037 22.09 8.02 39.88 3.51
4767 5671 9.830294 TTCTACGTGATAATATGGTTGTATACG 57.170 33.333 0.00 0.00 0.00 3.06
4807 5711 9.489393 GAAAATCACATTTTGAAGTTCCAAAAC 57.511 29.630 6.24 0.00 45.32 2.43
4810 5714 8.783833 TTGAAAATCACATTTTGAAGTTCCAA 57.216 26.923 0.00 0.00 42.15 3.53
4812 5716 8.882736 AGTTTGAAAATCACATTTTGAAGTTCC 58.117 29.630 0.00 0.00 42.15 3.62
4832 5736 9.677567 GTGAGCACTTTATTTTGAATAGTTTGA 57.322 29.630 0.00 0.00 0.00 2.69
4833 5737 9.683069 AGTGAGCACTTTATTTTGAATAGTTTG 57.317 29.630 0.00 0.00 38.83 2.93
4834 5738 9.683069 CAGTGAGCACTTTATTTTGAATAGTTT 57.317 29.630 0.00 0.00 40.20 2.66
4835 5739 9.066892 TCAGTGAGCACTTTATTTTGAATAGTT 57.933 29.630 0.00 0.00 40.20 2.24
4836 5740 8.507249 GTCAGTGAGCACTTTATTTTGAATAGT 58.493 33.333 0.00 0.00 40.20 2.12
4934 5839 7.095523 GCCATATTATATGGTTTGCTTTTGCTG 60.096 37.037 26.42 2.99 42.71 4.41
4942 5847 5.126061 CCCTCTGCCATATTATATGGTTTGC 59.874 44.000 26.42 15.57 41.17 3.68
4960 5865 1.821061 CGCCTAGGTATGCCCCTCTG 61.821 65.000 11.31 0.00 35.97 3.35
4964 5869 2.426023 CACGCCTAGGTATGCCCC 59.574 66.667 11.31 0.00 34.57 5.80
4967 5872 1.797025 GAATCCACGCCTAGGTATGC 58.203 55.000 11.31 0.00 0.00 3.14
4987 5892 5.622346 ATGAGGGAAACTAGAAGGATGAC 57.378 43.478 0.00 0.00 0.00 3.06
4997 5902 3.198417 GGTCCGGTTAATGAGGGAAACTA 59.802 47.826 0.00 0.00 0.00 2.24
5006 5911 4.960469 AGAAGATAGTGGTCCGGTTAATGA 59.040 41.667 0.00 0.00 0.00 2.57
5014 5919 6.071896 TGCATATAGAAGAAGATAGTGGTCCG 60.072 42.308 0.00 0.00 0.00 4.79
5021 5926 6.257411 CCCGCAATGCATATAGAAGAAGATAG 59.743 42.308 5.91 0.00 0.00 2.08
5028 5934 3.120546 CGTTCCCGCAATGCATATAGAAG 60.121 47.826 5.91 0.00 0.00 2.85
5044 5950 0.392595 CTTTAGGGTGGAGCGTTCCC 60.393 60.000 16.38 7.02 43.33 3.97
5045 5951 0.611714 TCTTTAGGGTGGAGCGTTCC 59.388 55.000 11.99 11.99 44.31 3.62
5046 5952 2.467566 TTCTTTAGGGTGGAGCGTTC 57.532 50.000 0.00 0.00 0.00 3.95
5082 6005 5.068636 GCATCATAGTTGTCTGAATCCCAT 58.931 41.667 0.00 0.00 0.00 4.00
5090 6013 2.679837 GTGGTGGCATCATAGTTGTCTG 59.320 50.000 2.60 0.00 0.00 3.51
5098 6021 2.118679 AGTAGCAGTGGTGGCATCATA 58.881 47.619 2.60 0.00 0.00 2.15
5099 6022 0.914644 AGTAGCAGTGGTGGCATCAT 59.085 50.000 2.60 0.00 0.00 2.45
5119 6042 1.282875 GAACACCAACTTCAGCGGC 59.717 57.895 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.