Multiple sequence alignment - TraesCS1D01G338200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G338200 chr1D 100.000 3322 0 0 1 3322 427597869 427594548 0.000000e+00 6135
1 TraesCS1D01G338200 chr1D 87.674 860 104 2 948 1807 427372335 427371478 0.000000e+00 1000
2 TraesCS1D01G338200 chr1D 86.477 880 116 3 928 1805 427332271 427331393 0.000000e+00 963
3 TraesCS1D01G338200 chr1D 85.259 909 118 13 930 1834 427319540 427318644 0.000000e+00 922
4 TraesCS1D01G338200 chr1D 85.360 444 60 5 1894 2336 427331348 427330909 3.910000e-124 455
5 TraesCS1D01G338200 chr1D 87.705 366 41 3 1976 2337 427371349 427370984 1.100000e-114 424
6 TraesCS1D01G338200 chr1D 83.459 399 18 18 2931 3322 427382132 427381775 8.890000e-86 327
7 TraesCS1D01G338200 chr1D 89.388 245 23 2 2708 2952 427377774 427377533 4.160000e-79 305
8 TraesCS1D01G338200 chr1D 89.388 245 23 3 2708 2952 427382433 427382192 4.160000e-79 305
9 TraesCS1D01G338200 chr1D 89.388 245 23 3 2708 2952 427387084 427386843 4.160000e-79 305
10 TraesCS1D01G338200 chr1D 88.980 245 24 3 2708 2952 427380101 427379860 1.940000e-77 300
11 TraesCS1D01G338200 chr1D 86.531 245 31 2 2708 2952 427400583 427400341 5.460000e-68 268
12 TraesCS1D01G338200 chr1D 96.078 153 5 1 2931 3083 427377473 427377322 7.120000e-62 248
13 TraesCS1D01G338200 chr1D 95.425 153 6 1 2931 3083 427384456 427384305 3.310000e-60 243
14 TraesCS1D01G338200 chr1D 95.425 153 6 1 2931 3083 427400284 427400133 3.310000e-60 243
15 TraesCS1D01G338200 chr1D 94.771 153 7 1 2931 3083 427379800 427379649 1.540000e-58 237
16 TraesCS1D01G338200 chr1D 94.771 153 7 1 2931 3083 427386783 427386632 1.540000e-58 237
17 TraesCS1D01G338200 chr1D 87.766 188 11 6 3142 3322 427377299 427377117 3.360000e-50 209
18 TraesCS1D01G338200 chr1D 87.766 188 11 6 3142 3322 427379627 427379445 3.360000e-50 209
19 TraesCS1D01G338200 chr1D 87.166 187 12 7 3142 3321 427400110 427399929 5.620000e-48 202
20 TraesCS1D01G338200 chr1D 86.702 188 13 6 3142 3322 427386610 427386428 7.270000e-47 198
21 TraesCS1D01G338200 chr1D 86.702 188 13 6 3142 3322 427388934 427388752 7.270000e-47 198
22 TraesCS1D01G338200 chr1D 85.638 188 15 6 3142 3322 427384283 427384101 1.570000e-43 187
23 TraesCS1D01G338200 chr1B 94.370 3286 116 28 30 3285 579779787 579776541 0.000000e+00 4979
24 TraesCS1D01G338200 chr1B 85.198 858 118 6 936 1789 577913166 577912314 0.000000e+00 872
25 TraesCS1D01G338200 chr1B 87.105 411 48 4 1930 2337 578044497 578044089 8.400000e-126 460
26 TraesCS1D01G338200 chr1B 87.671 365 42 1 1976 2337 579001355 579000991 3.960000e-114 422
27 TraesCS1D01G338200 chr1B 87.111 225 25 2 2708 2930 579004865 579004643 5.500000e-63 252
28 TraesCS1D01G338200 chr1B 90.659 182 11 3 3142 3322 579004410 579004234 1.540000e-58 237
29 TraesCS1D01G338200 chr1A 94.903 981 37 9 1492 2464 522882319 522881344 0.000000e+00 1522
30 TraesCS1D01G338200 chr1A 94.062 741 36 5 2463 3201 522880876 522880142 0.000000e+00 1118
31 TraesCS1D01G338200 chr1A 86.354 938 115 7 871 1807 522536005 522535080 0.000000e+00 1011
32 TraesCS1D01G338200 chr1A 84.940 996 121 22 856 1834 522510970 522509987 0.000000e+00 981
33 TraesCS1D01G338200 chr1A 89.286 616 41 12 30 633 522883544 522882942 0.000000e+00 749
34 TraesCS1D01G338200 chr1A 89.509 591 44 11 2502 3083 522538553 522537972 0.000000e+00 732
35 TraesCS1D01G338200 chr1A 86.761 423 47 5 1917 2336 522515412 522514996 2.330000e-126 462
36 TraesCS1D01G338200 chr5D 80.668 1438 201 46 427 1832 523188091 523186699 0.000000e+00 1044
37 TraesCS1D01G338200 chr5D 80.654 1437 202 45 427 1832 523315279 523313888 0.000000e+00 1044
38 TraesCS1D01G338200 chr5D 85.491 448 60 5 1896 2342 523186667 523186224 2.330000e-126 462
39 TraesCS1D01G338200 chr5D 85.491 448 59 6 1896 2342 523313856 523313414 2.330000e-126 462


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G338200 chr1D 427594548 427597869 3321 True 6135.000000 6135 100.000000 1 3322 1 chr1D.!!$R2 3321
1 TraesCS1D01G338200 chr1D 427318644 427319540 896 True 922.000000 922 85.259000 930 1834 1 chr1D.!!$R1 904
2 TraesCS1D01G338200 chr1D 427370984 427372335 1351 True 712.000000 1000 87.689500 948 2337 2 chr1D.!!$R4 1389
3 TraesCS1D01G338200 chr1D 427330909 427332271 1362 True 709.000000 963 85.918500 928 2336 2 chr1D.!!$R3 1408
4 TraesCS1D01G338200 chr1D 427377117 427388934 11817 True 250.571429 327 89.730143 2708 3322 14 chr1D.!!$R5 614
5 TraesCS1D01G338200 chr1D 427399929 427400583 654 True 237.666667 268 89.707333 2708 3321 3 chr1D.!!$R6 613
6 TraesCS1D01G338200 chr1B 579776541 579779787 3246 True 4979.000000 4979 94.370000 30 3285 1 chr1B.!!$R3 3255
7 TraesCS1D01G338200 chr1B 577912314 577913166 852 True 872.000000 872 85.198000 936 1789 1 chr1B.!!$R1 853
8 TraesCS1D01G338200 chr1B 579000991 579004865 3874 True 303.666667 422 88.480333 1976 3322 3 chr1B.!!$R4 1346
9 TraesCS1D01G338200 chr1A 522880142 522883544 3402 True 1129.666667 1522 92.750333 30 3201 3 chr1A.!!$R4 3171
10 TraesCS1D01G338200 chr1A 522509987 522510970 983 True 981.000000 981 84.940000 856 1834 1 chr1A.!!$R1 978
11 TraesCS1D01G338200 chr1A 522535080 522538553 3473 True 871.500000 1011 87.931500 871 3083 2 chr1A.!!$R3 2212
12 TraesCS1D01G338200 chr5D 523186224 523188091 1867 True 753.000000 1044 83.079500 427 2342 2 chr5D.!!$R1 1915
13 TraesCS1D01G338200 chr5D 523313414 523315279 1865 True 753.000000 1044 83.072500 427 2342 2 chr5D.!!$R2 1915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 197 0.318120 CCTTTCACCACAATGTGCCC 59.682 55.0 8.05 0.0 36.17 5.36 F
1656 3354 0.321741 TTACGAAGGCATTCCCGCAA 60.322 50.0 5.38 0.0 39.21 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 3361 0.036732 GGGAGATCCAACACACTGCA 59.963 55.0 0.47 0.0 37.91 4.41 R
2655 4920 0.175760 ACGTAGATGGCGCACTCATT 59.824 50.0 10.83 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.473027 GGAAAAATGTGCATCCATTCATTAG 57.527 36.000 3.27 0.00 34.01 1.73
26 27 6.549433 AAAATGTGCATCCATTCATTAGGT 57.451 33.333 3.27 0.00 34.01 3.08
27 28 5.524971 AATGTGCATCCATTCATTAGGTG 57.475 39.130 0.00 0.00 29.02 4.00
38 39 0.911769 CATTAGGTGTGGAGCTCCCA 59.088 55.000 29.95 22.85 44.25 4.37
63 64 2.094545 GCGCTTGTCCAATTCCATCTTT 60.095 45.455 0.00 0.00 0.00 2.52
140 141 3.423539 TCAATCTTGTTCACCCTGAGG 57.576 47.619 0.00 0.00 40.04 3.86
186 189 2.136298 TTCAGCAACCTTTCACCACA 57.864 45.000 0.00 0.00 0.00 4.17
194 197 0.318120 CCTTTCACCACAATGTGCCC 59.682 55.000 8.05 0.00 36.17 5.36
217 224 7.213678 CCCTAATTCTCACTATTTCTCTGTCC 58.786 42.308 0.00 0.00 0.00 4.02
287 296 0.957362 GGCTCCTCTATTTGGCATGC 59.043 55.000 9.90 9.90 0.00 4.06
633 670 2.291741 GAGTTGCACTGAAAGAAGTGGG 59.708 50.000 6.48 0.00 46.34 4.61
651 692 2.059541 GGGACTCGAGTGAAGAAAACG 58.940 52.381 25.58 0.00 0.00 3.60
727 769 7.088905 CGAGTTAGTTGTGTACCTGAGTAAAT 58.911 38.462 0.00 0.00 0.00 1.40
913 2593 2.677003 CGCCTTACCACGTGCCTTG 61.677 63.158 10.91 0.00 0.00 3.61
974 2667 2.512692 TGACTCCAATCCACCCATTG 57.487 50.000 0.00 0.00 34.06 2.82
1471 3169 2.159057 GCTCATGGCCTAAATGTTTGGG 60.159 50.000 3.32 3.74 41.28 4.12
1473 3171 3.364549 TCATGGCCTAAATGTTTGGGAG 58.635 45.455 11.53 0.00 40.88 4.30
1474 3172 3.011144 TCATGGCCTAAATGTTTGGGAGA 59.989 43.478 11.53 1.67 40.88 3.71
1475 3173 3.756082 TGGCCTAAATGTTTGGGAGAT 57.244 42.857 11.53 0.00 40.88 2.75
1476 3174 3.364549 TGGCCTAAATGTTTGGGAGATG 58.635 45.455 11.53 0.00 40.88 2.90
1477 3175 2.695147 GGCCTAAATGTTTGGGAGATGG 59.305 50.000 11.53 0.00 40.88 3.51
1478 3176 2.101415 GCCTAAATGTTTGGGAGATGGC 59.899 50.000 11.53 0.00 40.88 4.40
1479 3177 3.635591 CCTAAATGTTTGGGAGATGGCT 58.364 45.455 2.00 0.00 40.88 4.75
1480 3178 3.382546 CCTAAATGTTTGGGAGATGGCTG 59.617 47.826 2.00 0.00 40.88 4.85
1481 3179 2.905415 AATGTTTGGGAGATGGCTGA 57.095 45.000 0.00 0.00 0.00 4.26
1492 3190 4.966247 TGGCTGACCAGGACAGTA 57.034 55.556 18.70 7.24 42.67 2.74
1493 3191 2.362242 TGGCTGACCAGGACAGTAC 58.638 57.895 18.70 12.99 42.67 2.73
1496 3194 2.176889 GGCTGACCAGGACAGTACTTA 58.823 52.381 18.70 0.00 37.64 2.24
1499 3197 3.006537 GCTGACCAGGACAGTACTTACAA 59.993 47.826 18.70 0.00 37.64 2.41
1500 3198 4.557205 CTGACCAGGACAGTACTTACAAC 58.443 47.826 10.55 0.00 0.00 3.32
1501 3199 3.322828 TGACCAGGACAGTACTTACAACC 59.677 47.826 0.00 0.00 0.00 3.77
1502 3200 3.311091 ACCAGGACAGTACTTACAACCA 58.689 45.455 0.00 0.00 0.00 3.67
1506 3204 4.219944 CAGGACAGTACTTACAACCAGCTA 59.780 45.833 0.00 0.00 0.00 3.32
1507 3205 4.836736 AGGACAGTACTTACAACCAGCTAA 59.163 41.667 0.00 0.00 0.00 3.09
1512 3210 6.649557 ACAGTACTTACAACCAGCTAATCAAC 59.350 38.462 0.00 0.00 0.00 3.18
1515 3213 6.313744 ACTTACAACCAGCTAATCAACAAC 57.686 37.500 0.00 0.00 0.00 3.32
1518 3216 1.890876 ACCAGCTAATCAACAACGCA 58.109 45.000 0.00 0.00 0.00 5.24
1519 3217 2.226330 ACCAGCTAATCAACAACGCAA 58.774 42.857 0.00 0.00 0.00 4.85
1520 3218 2.819608 ACCAGCTAATCAACAACGCAAT 59.180 40.909 0.00 0.00 0.00 3.56
1521 3219 3.173599 CCAGCTAATCAACAACGCAATG 58.826 45.455 0.00 0.00 0.00 2.82
1523 3221 2.819608 AGCTAATCAACAACGCAATGGT 59.180 40.909 0.00 0.00 0.00 3.55
1524 3222 3.255642 AGCTAATCAACAACGCAATGGTT 59.744 39.130 0.00 0.00 0.00 3.67
1525 3223 3.987220 GCTAATCAACAACGCAATGGTTT 59.013 39.130 0.00 0.00 0.00 3.27
1526 3224 4.089923 GCTAATCAACAACGCAATGGTTTC 59.910 41.667 0.00 0.00 0.00 2.78
1530 3228 3.317711 TCAACAACGCAATGGTTTCTGAT 59.682 39.130 0.00 0.00 0.00 2.90
1532 3230 4.685169 ACAACGCAATGGTTTCTGATAG 57.315 40.909 0.00 0.00 0.00 2.08
1534 3232 2.710377 ACGCAATGGTTTCTGATAGCA 58.290 42.857 2.62 2.62 0.00 3.49
1535 3233 3.081061 ACGCAATGGTTTCTGATAGCAA 58.919 40.909 4.21 0.00 0.00 3.91
1536 3234 3.119849 ACGCAATGGTTTCTGATAGCAAC 60.120 43.478 4.21 0.00 0.00 4.17
1537 3235 3.127548 CGCAATGGTTTCTGATAGCAACT 59.872 43.478 4.21 0.00 0.00 3.16
1538 3236 4.379813 CGCAATGGTTTCTGATAGCAACTT 60.380 41.667 4.21 0.00 0.00 2.66
1539 3237 5.473039 GCAATGGTTTCTGATAGCAACTTT 58.527 37.500 4.21 0.00 0.00 2.66
1540 3238 5.574443 GCAATGGTTTCTGATAGCAACTTTC 59.426 40.000 4.21 0.00 0.00 2.62
1542 3240 6.749923 ATGGTTTCTGATAGCAACTTTCTC 57.250 37.500 4.21 0.00 0.00 2.87
1544 3242 6.240894 TGGTTTCTGATAGCAACTTTCTCAT 58.759 36.000 0.00 0.00 0.00 2.90
1545 3243 6.149973 TGGTTTCTGATAGCAACTTTCTCATG 59.850 38.462 0.00 0.00 0.00 3.07
1550 3248 5.748402 TGATAGCAACTTTCTCATGGACAT 58.252 37.500 0.00 0.00 0.00 3.06
1551 3249 5.819379 TGATAGCAACTTTCTCATGGACATC 59.181 40.000 0.00 0.00 0.00 3.06
1553 3251 4.597004 AGCAACTTTCTCATGGACATCAT 58.403 39.130 0.00 0.00 36.31 2.45
1555 3253 4.639310 GCAACTTTCTCATGGACATCATCT 59.361 41.667 0.00 0.00 32.92 2.90
1556 3254 5.125097 GCAACTTTCTCATGGACATCATCTT 59.875 40.000 0.00 0.00 32.92 2.40
1557 3255 6.552629 CAACTTTCTCATGGACATCATCTTG 58.447 40.000 0.00 0.00 32.92 3.02
1559 3257 6.114089 ACTTTCTCATGGACATCATCTTGAG 58.886 40.000 0.00 0.00 38.16 3.02
1560 3258 4.684484 TCTCATGGACATCATCTTGAGG 57.316 45.455 0.00 0.00 37.76 3.86
1561 3259 3.390311 TCTCATGGACATCATCTTGAGGG 59.610 47.826 0.00 0.00 37.76 4.30
1563 3261 3.390311 TCATGGACATCATCTTGAGGGAG 59.610 47.826 0.00 0.00 31.56 4.30
1564 3262 2.837947 TGGACATCATCTTGAGGGAGT 58.162 47.619 0.00 0.00 31.56 3.85
1565 3263 2.502947 TGGACATCATCTTGAGGGAGTG 59.497 50.000 0.00 0.00 31.56 3.51
1566 3264 2.503356 GGACATCATCTTGAGGGAGTGT 59.497 50.000 0.00 0.00 31.56 3.55
1568 3266 2.238144 ACATCATCTTGAGGGAGTGTGG 59.762 50.000 0.00 0.00 31.56 4.17
1569 3267 2.030027 TCATCTTGAGGGAGTGTGGT 57.970 50.000 0.00 0.00 0.00 4.16
1570 3268 1.625315 TCATCTTGAGGGAGTGTGGTG 59.375 52.381 0.00 0.00 0.00 4.17
1572 3270 2.030027 TCTTGAGGGAGTGTGGTGAT 57.970 50.000 0.00 0.00 0.00 3.06
1573 3271 1.625315 TCTTGAGGGAGTGTGGTGATG 59.375 52.381 0.00 0.00 0.00 3.07
1575 3273 2.319025 TGAGGGAGTGTGGTGATGTA 57.681 50.000 0.00 0.00 0.00 2.29
1576 3274 2.832838 TGAGGGAGTGTGGTGATGTAT 58.167 47.619 0.00 0.00 0.00 2.29
1577 3275 3.181329 TGAGGGAGTGTGGTGATGTATT 58.819 45.455 0.00 0.00 0.00 1.89
1579 3277 4.192317 GAGGGAGTGTGGTGATGTATTTC 58.808 47.826 0.00 0.00 0.00 2.17
1580 3278 3.846588 AGGGAGTGTGGTGATGTATTTCT 59.153 43.478 0.00 0.00 0.00 2.52
1583 3281 4.396166 GGAGTGTGGTGATGTATTTCTTGG 59.604 45.833 0.00 0.00 0.00 3.61
1584 3282 3.758554 AGTGTGGTGATGTATTTCTTGGC 59.241 43.478 0.00 0.00 0.00 4.52
1587 3285 5.356751 GTGTGGTGATGTATTTCTTGGCATA 59.643 40.000 0.00 0.00 0.00 3.14
1588 3286 5.948758 TGTGGTGATGTATTTCTTGGCATAA 59.051 36.000 0.00 0.00 0.00 1.90
1589 3287 6.435591 TGTGGTGATGTATTTCTTGGCATAAA 59.564 34.615 0.00 0.00 0.00 1.40
1590 3288 6.751888 GTGGTGATGTATTTCTTGGCATAAAC 59.248 38.462 0.00 0.00 0.00 2.01
1594 3292 5.229921 TGTATTTCTTGGCATAAACTCGC 57.770 39.130 0.00 0.00 0.00 5.03
1595 3293 4.941263 TGTATTTCTTGGCATAAACTCGCT 59.059 37.500 0.00 0.00 0.00 4.93
1598 3296 6.699575 ATTTCTTGGCATAAACTCGCTTAT 57.300 33.333 0.00 0.00 0.00 1.73
1600 3298 5.484173 TCTTGGCATAAACTCGCTTATTG 57.516 39.130 0.00 0.00 0.00 1.90
1603 3301 5.422666 TGGCATAAACTCGCTTATTGATG 57.577 39.130 0.00 0.00 0.00 3.07
1605 3303 5.007626 TGGCATAAACTCGCTTATTGATGTC 59.992 40.000 0.00 0.00 0.00 3.06
1606 3304 5.133264 GCATAAACTCGCTTATTGATGTCG 58.867 41.667 0.00 0.00 0.00 4.35
1607 3305 3.658351 AAACTCGCTTATTGATGTCGC 57.342 42.857 0.00 0.00 0.00 5.19
1609 3307 0.504384 CTCGCTTATTGATGTCGCCG 59.496 55.000 0.00 0.00 0.00 6.46
1610 3308 0.874175 TCGCTTATTGATGTCGCCGG 60.874 55.000 0.00 0.00 0.00 6.13
1611 3309 0.874175 CGCTTATTGATGTCGCCGGA 60.874 55.000 5.05 0.00 0.00 5.14
1625 3323 2.187946 CGGAGGTCATGGTGGAGC 59.812 66.667 0.00 0.00 35.57 4.70
1628 3326 1.451028 GAGGTCATGGTGGAGCTGC 60.451 63.158 0.00 0.00 45.03 5.25
1629 3327 2.439156 GGTCATGGTGGAGCTGCC 60.439 66.667 1.53 0.00 32.68 4.85
1630 3328 2.352422 GTCATGGTGGAGCTGCCA 59.648 61.111 1.53 3.03 46.96 4.92
1645 3343 2.106844 GCCAGGGCAATTACGAAGG 58.893 57.895 5.20 0.00 41.49 3.46
1646 3344 2.004808 GCCAGGGCAATTACGAAGGC 62.005 60.000 5.20 0.00 41.49 4.35
1647 3345 0.679640 CCAGGGCAATTACGAAGGCA 60.680 55.000 0.00 0.00 0.00 4.75
1648 3346 1.392589 CAGGGCAATTACGAAGGCAT 58.607 50.000 0.00 0.00 0.00 4.40
1649 3347 1.750778 CAGGGCAATTACGAAGGCATT 59.249 47.619 0.00 0.00 0.00 3.56
1651 3349 1.067060 GGGCAATTACGAAGGCATTCC 59.933 52.381 5.38 0.00 31.21 3.01
1652 3350 1.067060 GGCAATTACGAAGGCATTCCC 59.933 52.381 5.38 0.00 31.21 3.97
1653 3351 1.268539 GCAATTACGAAGGCATTCCCG 60.269 52.381 5.38 0.00 39.21 5.14
1654 3352 1.021968 AATTACGAAGGCATTCCCGC 58.978 50.000 5.38 0.00 39.21 6.13
1656 3354 0.321741 TTACGAAGGCATTCCCGCAA 60.322 50.000 5.38 0.00 39.21 4.85
1657 3355 0.321741 TACGAAGGCATTCCCGCAAA 60.322 50.000 5.38 0.00 39.21 3.68
1658 3356 0.965363 ACGAAGGCATTCCCGCAAAT 60.965 50.000 5.38 0.00 39.21 2.32
1660 3358 0.817013 GAAGGCATTCCCGCAAATGA 59.183 50.000 0.00 0.00 38.64 2.57
1661 3359 1.204467 GAAGGCATTCCCGCAAATGAA 59.796 47.619 0.00 0.00 38.64 2.57
1662 3360 1.265236 AGGCATTCCCGCAAATGAAA 58.735 45.000 10.99 0.00 38.64 2.69
1663 3361 1.832998 AGGCATTCCCGCAAATGAAAT 59.167 42.857 10.99 0.00 38.64 2.17
1664 3362 1.935199 GGCATTCCCGCAAATGAAATG 59.065 47.619 10.99 0.00 38.64 2.32
1665 3363 1.328374 GCATTCCCGCAAATGAAATGC 59.672 47.619 10.99 2.99 38.64 3.56
1666 3364 2.619147 CATTCCCGCAAATGAAATGCA 58.381 42.857 0.00 0.00 44.01 3.96
1667 3365 2.367030 TTCCCGCAAATGAAATGCAG 57.633 45.000 0.00 0.00 44.01 4.41
1671 3369 1.722464 CCGCAAATGAAATGCAGTGTG 59.278 47.619 0.00 0.00 44.01 3.82
1672 3370 2.396601 CGCAAATGAAATGCAGTGTGT 58.603 42.857 0.00 0.00 44.01 3.72
1673 3371 2.796031 CGCAAATGAAATGCAGTGTGTT 59.204 40.909 0.00 0.00 44.01 3.32
1676 3374 4.370049 CAAATGAAATGCAGTGTGTTGGA 58.630 39.130 0.00 0.00 0.00 3.53
1677 3375 4.877378 AATGAAATGCAGTGTGTTGGAT 57.123 36.364 0.00 0.00 0.00 3.41
1678 3376 3.921119 TGAAATGCAGTGTGTTGGATC 57.079 42.857 0.00 0.00 0.00 3.36
1679 3377 3.489355 TGAAATGCAGTGTGTTGGATCT 58.511 40.909 0.00 0.00 0.00 2.75
1682 3380 0.036732 TGCAGTGTGTTGGATCTCCC 59.963 55.000 0.00 0.00 34.29 4.30
1684 3382 1.677217 GCAGTGTGTTGGATCTCCCTC 60.677 57.143 0.00 0.00 35.38 4.30
1685 3383 1.625315 CAGTGTGTTGGATCTCCCTCA 59.375 52.381 0.00 0.00 35.38 3.86
1688 3386 2.026822 GTGTGTTGGATCTCCCTCATGT 60.027 50.000 0.00 0.00 35.38 3.21
1689 3387 2.026915 TGTGTTGGATCTCCCTCATGTG 60.027 50.000 0.00 0.00 35.38 3.21
1691 3389 1.561542 GTTGGATCTCCCTCATGTGGT 59.438 52.381 12.65 0.00 35.38 4.16
1695 3393 0.994247 ATCTCCCTCATGTGGTTGCA 59.006 50.000 12.65 0.00 0.00 4.08
1696 3394 0.325933 TCTCCCTCATGTGGTTGCAG 59.674 55.000 12.65 3.63 0.00 4.41
1701 3399 1.531423 CTCATGTGGTTGCAGAAGCT 58.469 50.000 0.00 0.00 42.74 3.74
1702 3400 1.467734 CTCATGTGGTTGCAGAAGCTC 59.532 52.381 0.00 0.00 42.74 4.09
1703 3401 0.524862 CATGTGGTTGCAGAAGCTCC 59.475 55.000 0.00 0.00 42.74 4.70
1717 3415 2.704108 GCTCCTGCTGATGACCATG 58.296 57.895 0.00 0.00 36.03 3.66
1718 3416 0.107312 GCTCCTGCTGATGACCATGT 60.107 55.000 0.00 0.00 36.03 3.21
1721 3419 0.393944 CCTGCTGATGACCATGTGCT 60.394 55.000 0.00 0.00 0.00 4.40
1723 3421 0.037160 TGCTGATGACCATGTGCTGT 59.963 50.000 0.00 0.00 0.00 4.40
1725 3423 1.542915 GCTGATGACCATGTGCTGTTT 59.457 47.619 0.00 0.00 0.00 2.83
1727 3425 3.379372 GCTGATGACCATGTGCTGTTTAT 59.621 43.478 0.00 0.00 0.00 1.40
1728 3426 4.142315 GCTGATGACCATGTGCTGTTTATT 60.142 41.667 0.00 0.00 0.00 1.40
1730 3428 5.953183 TGATGACCATGTGCTGTTTATTTC 58.047 37.500 0.00 0.00 0.00 2.17
1731 3429 5.711506 TGATGACCATGTGCTGTTTATTTCT 59.288 36.000 0.00 0.00 0.00 2.52
1732 3430 5.375417 TGACCATGTGCTGTTTATTTCTG 57.625 39.130 0.00 0.00 0.00 3.02
1736 3434 4.218200 CCATGTGCTGTTTATTTCTGGTGA 59.782 41.667 0.00 0.00 0.00 4.02
1737 3435 5.105635 CCATGTGCTGTTTATTTCTGGTGAT 60.106 40.000 0.00 0.00 0.00 3.06
1738 3436 6.095300 CCATGTGCTGTTTATTTCTGGTGATA 59.905 38.462 0.00 0.00 0.00 2.15
1741 3439 6.658816 TGTGCTGTTTATTTCTGGTGATATGT 59.341 34.615 0.00 0.00 0.00 2.29
1742 3440 7.176515 TGTGCTGTTTATTTCTGGTGATATGTT 59.823 33.333 0.00 0.00 0.00 2.71
1744 3442 9.237187 TGCTGTTTATTTCTGGTGATATGTTTA 57.763 29.630 0.00 0.00 0.00 2.01
1754 3452 8.958119 TCTGGTGATATGTTTAAGTACATTCC 57.042 34.615 0.00 0.00 39.39 3.01
1755 3453 8.544622 TCTGGTGATATGTTTAAGTACATTCCA 58.455 33.333 0.00 3.41 39.39 3.53
1756 3454 8.500753 TGGTGATATGTTTAAGTACATTCCAC 57.499 34.615 0.00 11.97 39.39 4.02
1757 3455 7.554835 TGGTGATATGTTTAAGTACATTCCACC 59.445 37.037 21.83 21.83 46.35 4.61
1758 3456 7.554835 GGTGATATGTTTAAGTACATTCCACCA 59.445 37.037 22.69 6.99 45.98 4.17
1761 3459 3.749088 TGTTTAAGTACATTCCACCAGCG 59.251 43.478 0.00 0.00 0.00 5.18
1762 3460 3.965379 TTAAGTACATTCCACCAGCGA 57.035 42.857 0.00 0.00 0.00 4.93
1764 3462 3.350219 AAGTACATTCCACCAGCGAAT 57.650 42.857 0.00 0.00 0.00 3.34
1769 3467 2.215451 ATTCCACCAGCGAATGCCCT 62.215 55.000 0.00 0.00 44.31 5.19
1771 3469 1.978617 CCACCAGCGAATGCCCTTT 60.979 57.895 0.00 0.00 44.31 3.11
1772 3470 1.535204 CCACCAGCGAATGCCCTTTT 61.535 55.000 0.00 0.00 44.31 2.27
1773 3471 0.109132 CACCAGCGAATGCCCTTTTC 60.109 55.000 0.00 0.00 44.31 2.29
1774 3472 1.250840 ACCAGCGAATGCCCTTTTCC 61.251 55.000 0.00 0.00 44.31 3.13
1776 3474 1.681780 CCAGCGAATGCCCTTTTCCTA 60.682 52.381 0.00 0.00 44.31 2.94
1777 3475 2.091541 CAGCGAATGCCCTTTTCCTAA 58.908 47.619 0.00 0.00 44.31 2.69
1821 3519 6.894339 TTTCTTCTTATTCCCTTGGAACAC 57.106 37.500 0.00 0.00 45.07 3.32
1822 3520 5.576563 TCTTCTTATTCCCTTGGAACACA 57.423 39.130 0.00 0.00 45.07 3.72
1823 3521 6.139679 TCTTCTTATTCCCTTGGAACACAT 57.860 37.500 0.00 0.00 45.07 3.21
1824 3522 6.180472 TCTTCTTATTCCCTTGGAACACATC 58.820 40.000 0.00 0.00 45.07 3.06
1825 3523 4.855340 TCTTATTCCCTTGGAACACATCC 58.145 43.478 0.00 0.00 45.07 3.51
1841 3539 8.902806 GGAACACATCCTCATTTTGTAATATCA 58.097 33.333 0.00 0.00 45.56 2.15
1844 3542 9.412460 ACACATCCTCATTTTGTAATATCATGT 57.588 29.630 0.00 0.00 0.00 3.21
1903 3601 9.509956 ACAAACTGTGTATTTACTATTTAGCCA 57.490 29.630 0.00 0.00 39.29 4.75
1904 3602 9.769093 CAAACTGTGTATTTACTATTTAGCCAC 57.231 33.333 0.00 0.00 0.00 5.01
1905 3603 9.734984 AAACTGTGTATTTACTATTTAGCCACT 57.265 29.630 0.00 0.00 0.00 4.00
1911 3609 9.839817 TGTATTTACTATTTAGCCACTTATGCA 57.160 29.630 0.00 0.00 0.00 3.96
1921 3619 8.462589 TTTAGCCACTTATGCATATCAATTGA 57.537 30.769 11.26 11.26 0.00 2.57
1922 3620 6.964807 AGCCACTTATGCATATCAATTGAA 57.035 33.333 13.09 2.57 0.00 2.69
1926 3624 6.919662 CCACTTATGCATATCAATTGAACCAC 59.080 38.462 13.09 3.73 0.00 4.16
1927 3625 7.201848 CCACTTATGCATATCAATTGAACCACT 60.202 37.037 13.09 0.00 0.00 4.00
1929 3627 9.407380 ACTTATGCATATCAATTGAACCACTAA 57.593 29.630 13.09 6.02 0.00 2.24
1932 3630 6.563422 TGCATATCAATTGAACCACTAAAGC 58.437 36.000 13.09 8.99 0.00 3.51
1933 3631 6.152492 TGCATATCAATTGAACCACTAAAGCA 59.848 34.615 13.09 11.19 0.00 3.91
1934 3632 7.035004 GCATATCAATTGAACCACTAAAGCAA 58.965 34.615 13.09 0.00 0.00 3.91
1935 3633 7.221452 GCATATCAATTGAACCACTAAAGCAAG 59.779 37.037 13.09 0.00 0.00 4.01
1936 3634 4.870363 TCAATTGAACCACTAAAGCAAGC 58.130 39.130 5.45 0.00 0.00 4.01
1938 3636 5.767665 TCAATTGAACCACTAAAGCAAGCTA 59.232 36.000 5.45 0.00 0.00 3.32
1939 3637 6.264292 TCAATTGAACCACTAAAGCAAGCTAA 59.736 34.615 5.45 0.00 0.00 3.09
1941 3639 4.714632 TGAACCACTAAAGCAAGCTAACT 58.285 39.130 0.00 0.00 0.00 2.24
1942 3640 5.860611 TGAACCACTAAAGCAAGCTAACTA 58.139 37.500 0.00 0.00 0.00 2.24
1943 3641 6.292923 TGAACCACTAAAGCAAGCTAACTAA 58.707 36.000 0.00 0.00 0.00 2.24
1945 3643 7.447238 TGAACCACTAAAGCAAGCTAACTAATT 59.553 33.333 0.00 0.00 0.00 1.40
1946 3644 7.761038 ACCACTAAAGCAAGCTAACTAATTT 57.239 32.000 0.00 0.00 0.00 1.82
1947 3645 8.178313 ACCACTAAAGCAAGCTAACTAATTTT 57.822 30.769 0.00 0.00 0.00 1.82
1948 3646 8.082242 ACCACTAAAGCAAGCTAACTAATTTTG 58.918 33.333 0.00 0.00 0.00 2.44
1949 3647 8.082242 CCACTAAAGCAAGCTAACTAATTTTGT 58.918 33.333 0.00 0.00 0.00 2.83
1954 3652 9.626045 AAAGCAAGCTAACTAATTTTGTATGAC 57.374 29.630 0.00 0.00 0.00 3.06
1955 3653 8.335532 AGCAAGCTAACTAATTTTGTATGACA 57.664 30.769 0.00 0.00 0.00 3.58
1956 3654 8.792633 AGCAAGCTAACTAATTTTGTATGACAA 58.207 29.630 0.00 0.00 36.11 3.18
1957 3655 9.405587 GCAAGCTAACTAATTTTGTATGACAAA 57.594 29.630 0.69 0.69 45.37 2.83
1970 3668 8.563289 TTTGTATGACAAAACCGTACAATTTC 57.437 30.769 2.36 0.00 44.23 2.17
1971 3669 6.670233 TGTATGACAAAACCGTACAATTTCC 58.330 36.000 0.00 0.00 34.26 3.13
1972 3670 5.776173 ATGACAAAACCGTACAATTTCCA 57.224 34.783 0.00 0.00 0.00 3.53
1973 3671 5.176407 TGACAAAACCGTACAATTTCCAG 57.824 39.130 0.00 0.00 0.00 3.86
1974 3672 3.972403 ACAAAACCGTACAATTTCCAGC 58.028 40.909 0.00 0.00 0.00 4.85
1975 3673 3.381908 ACAAAACCGTACAATTTCCAGCA 59.618 39.130 0.00 0.00 0.00 4.41
2171 3949 7.412346 CCAAATGAGAATGTAACAAGAGAGACG 60.412 40.741 0.00 0.00 0.00 4.18
2391 4169 2.959516 TGCTCATGAGACAACGGTTAG 58.040 47.619 27.04 0.00 0.00 2.34
2413 4191 8.660373 GTTAGTATTAAGATGATGTGCCTATGC 58.340 37.037 0.00 0.00 38.26 3.14
2429 4209 5.047188 GCCTATGCTTCAGTTCTTACTCTC 58.953 45.833 0.00 0.00 30.19 3.20
2430 4210 5.163457 GCCTATGCTTCAGTTCTTACTCTCT 60.163 44.000 0.00 0.00 30.19 3.10
2431 4211 6.039941 GCCTATGCTTCAGTTCTTACTCTCTA 59.960 42.308 0.00 0.00 30.19 2.43
2467 4716 2.048597 TACAGTTCCACGCCAGCG 60.049 61.111 11.05 11.05 46.03 5.18
2561 4824 8.696374 CCTTAGTCCTATTTGTCTGACTGAATA 58.304 37.037 9.51 11.69 38.46 1.75
2564 4827 7.504403 AGTCCTATTTGTCTGACTGAATATGG 58.496 38.462 9.51 13.97 36.74 2.74
2565 4828 6.708054 GTCCTATTTGTCTGACTGAATATGGG 59.292 42.308 9.51 11.06 0.00 4.00
2566 4829 6.386927 TCCTATTTGTCTGACTGAATATGGGT 59.613 38.462 9.51 0.00 0.00 4.51
2567 4830 7.056635 CCTATTTGTCTGACTGAATATGGGTT 58.943 38.462 9.51 0.00 0.00 4.11
2568 4831 7.227512 CCTATTTGTCTGACTGAATATGGGTTC 59.772 40.741 9.51 0.00 0.00 3.62
2569 4832 5.762179 TTGTCTGACTGAATATGGGTTCT 57.238 39.130 9.51 0.00 0.00 3.01
2570 4833 5.089970 TGTCTGACTGAATATGGGTTCTG 57.910 43.478 9.51 0.00 34.42 3.02
2571 4834 4.777366 TGTCTGACTGAATATGGGTTCTGA 59.223 41.667 9.51 0.00 33.07 3.27
2572 4835 5.248248 TGTCTGACTGAATATGGGTTCTGAA 59.752 40.000 9.51 0.00 33.07 3.02
2573 4836 6.070021 TGTCTGACTGAATATGGGTTCTGAAT 60.070 38.462 9.51 0.00 33.07 2.57
2654 4919 4.080807 TCGCTTCCCATACTAACCATGAAA 60.081 41.667 0.00 0.00 0.00 2.69
2655 4920 4.638421 CGCTTCCCATACTAACCATGAAAA 59.362 41.667 0.00 0.00 0.00 2.29
2681 4946 1.195900 TGCGCCATCTACGTTTGTTTC 59.804 47.619 4.18 0.00 0.00 2.78
2684 4949 2.418628 CGCCATCTACGTTTGTTTCCAT 59.581 45.455 0.00 0.00 0.00 3.41
2783 14366 2.270352 TTTTGCCGAATCAGACACCT 57.730 45.000 0.00 0.00 0.00 4.00
2845 14428 1.215382 CGACACCGAATCTGAGCCA 59.785 57.895 0.00 0.00 38.22 4.75
2916 14499 4.380444 CGCACTAATTTACAAATGGCTGGT 60.380 41.667 0.00 0.00 0.00 4.00
3014 14677 7.896383 TTGTCCCCCTGAGAATATATTTTTG 57.104 36.000 0.00 0.00 0.00 2.44
3307 14977 7.801547 ATTTACATCAAACATCAGCTTTTCG 57.198 32.000 0.00 0.00 0.00 3.46
3310 14981 4.275689 ACATCAAACATCAGCTTTTCGTGA 59.724 37.500 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.010738 CACCTAATGAATGGATGCACATTTTTC 59.989 37.037 8.08 0.26 40.92 2.29
3 4 6.070653 ACACCTAATGAATGGATGCACATTTT 60.071 34.615 8.08 0.00 40.92 1.82
5 6 4.957954 ACACCTAATGAATGGATGCACATT 59.042 37.500 7.92 7.92 43.36 2.71
7 8 3.695556 CACACCTAATGAATGGATGCACA 59.304 43.478 0.00 0.00 0.00 4.57
9 10 3.053768 TCCACACCTAATGAATGGATGCA 60.054 43.478 0.00 0.00 34.50 3.96
11 12 3.567164 GCTCCACACCTAATGAATGGATG 59.433 47.826 0.00 0.00 38.74 3.51
13 14 2.846206 AGCTCCACACCTAATGAATGGA 59.154 45.455 0.00 0.00 37.11 3.41
15 16 3.209410 GGAGCTCCACACCTAATGAATG 58.791 50.000 28.43 0.00 35.64 2.67
18 19 1.204146 GGGAGCTCCACACCTAATGA 58.796 55.000 33.29 0.00 37.91 2.57
38 39 2.722094 TGGAATTGGACAAGCGCTTAT 58.278 42.857 24.55 12.98 0.00 1.73
63 64 7.064609 CGCCAAGATCAGAAATAGAACAAGTAA 59.935 37.037 0.00 0.00 0.00 2.24
76 77 3.401033 TGAACTTCGCCAAGATCAGAA 57.599 42.857 0.00 0.00 36.71 3.02
140 141 1.379527 CCCAAATTCAGACGGTAGGC 58.620 55.000 0.00 0.00 0.00 3.93
186 189 7.349598 AGAAATAGTGAGAATTAGGGCACATT 58.650 34.615 0.00 0.00 33.85 2.71
194 197 7.708051 TCGGACAGAGAAATAGTGAGAATTAG 58.292 38.462 0.00 0.00 0.00 1.73
230 237 5.518487 GTCTGATTCGGCAAAAGAAACAAAA 59.482 36.000 0.00 0.00 31.65 2.44
287 296 2.752354 TGTCGGTTAGGCAAATTCCATG 59.248 45.455 0.00 0.00 0.00 3.66
633 670 2.124903 TGCGTTTTCTTCACTCGAGTC 58.875 47.619 16.96 0.34 0.00 3.36
895 2575 2.358247 AAGGCACGTGGTAAGGCG 60.358 61.111 18.88 0.00 0.00 5.52
1466 3164 0.329261 CTGGTCAGCCATCTCCCAAA 59.671 55.000 0.00 0.00 45.05 3.28
1467 3165 1.565390 CCTGGTCAGCCATCTCCCAA 61.565 60.000 0.00 0.00 45.05 4.12
1468 3166 1.997311 CCTGGTCAGCCATCTCCCA 60.997 63.158 0.00 0.00 45.05 4.37
1469 3167 1.690633 TCCTGGTCAGCCATCTCCC 60.691 63.158 0.00 0.00 45.05 4.30
1471 3169 0.177604 CTGTCCTGGTCAGCCATCTC 59.822 60.000 7.99 0.00 45.05 2.75
1473 3171 1.134670 GTACTGTCCTGGTCAGCCATC 60.135 57.143 18.85 5.50 45.05 3.51
1474 3172 0.905357 GTACTGTCCTGGTCAGCCAT 59.095 55.000 18.85 4.64 45.05 4.40
1475 3173 0.178932 AGTACTGTCCTGGTCAGCCA 60.179 55.000 18.85 6.35 43.73 4.75
1476 3174 0.977395 AAGTACTGTCCTGGTCAGCC 59.023 55.000 18.85 10.92 36.50 4.85
1477 3175 2.561419 TGTAAGTACTGTCCTGGTCAGC 59.439 50.000 18.85 5.80 36.50 4.26
1478 3176 4.557205 GTTGTAAGTACTGTCCTGGTCAG 58.443 47.826 17.61 17.61 38.68 3.51
1479 3177 3.322828 GGTTGTAAGTACTGTCCTGGTCA 59.677 47.826 0.00 0.00 0.00 4.02
1480 3178 3.322828 TGGTTGTAAGTACTGTCCTGGTC 59.677 47.826 0.00 0.00 0.00 4.02
1481 3179 3.311091 TGGTTGTAAGTACTGTCCTGGT 58.689 45.455 0.00 0.00 0.00 4.00
1484 3182 3.240302 AGCTGGTTGTAAGTACTGTCCT 58.760 45.455 0.00 0.00 0.00 3.85
1485 3183 3.679824 AGCTGGTTGTAAGTACTGTCC 57.320 47.619 0.00 0.00 0.00 4.02
1489 3187 6.765403 TGTTGATTAGCTGGTTGTAAGTACT 58.235 36.000 0.00 0.00 0.00 2.73
1490 3188 7.295930 GTTGTTGATTAGCTGGTTGTAAGTAC 58.704 38.462 0.00 0.00 0.00 2.73
1491 3189 6.146510 CGTTGTTGATTAGCTGGTTGTAAGTA 59.853 38.462 0.00 0.00 0.00 2.24
1492 3190 5.049680 CGTTGTTGATTAGCTGGTTGTAAGT 60.050 40.000 0.00 0.00 0.00 2.24
1493 3191 5.382303 CGTTGTTGATTAGCTGGTTGTAAG 58.618 41.667 0.00 0.00 0.00 2.34
1496 3194 2.031157 GCGTTGTTGATTAGCTGGTTGT 60.031 45.455 0.00 0.00 0.00 3.32
1499 3197 1.890876 TGCGTTGTTGATTAGCTGGT 58.109 45.000 0.00 0.00 0.00 4.00
1500 3198 2.987413 TTGCGTTGTTGATTAGCTGG 57.013 45.000 0.00 0.00 0.00 4.85
1501 3199 3.173599 CCATTGCGTTGTTGATTAGCTG 58.826 45.455 0.00 0.00 0.00 4.24
1502 3200 2.819608 ACCATTGCGTTGTTGATTAGCT 59.180 40.909 0.00 0.00 0.00 3.32
1506 3204 4.050553 CAGAAACCATTGCGTTGTTGATT 58.949 39.130 0.00 0.00 0.00 2.57
1507 3205 3.317711 TCAGAAACCATTGCGTTGTTGAT 59.682 39.130 0.00 0.00 0.00 2.57
1512 3210 3.119884 TGCTATCAGAAACCATTGCGTTG 60.120 43.478 0.00 0.00 0.00 4.10
1515 3213 3.127548 AGTTGCTATCAGAAACCATTGCG 59.872 43.478 0.00 0.00 34.15 4.85
1518 3216 6.716628 TGAGAAAGTTGCTATCAGAAACCATT 59.283 34.615 0.00 0.00 34.15 3.16
1519 3217 6.240894 TGAGAAAGTTGCTATCAGAAACCAT 58.759 36.000 0.00 0.00 34.15 3.55
1520 3218 5.620206 TGAGAAAGTTGCTATCAGAAACCA 58.380 37.500 0.00 0.00 34.15 3.67
1521 3219 6.404074 CCATGAGAAAGTTGCTATCAGAAACC 60.404 42.308 0.00 0.00 34.15 3.27
1523 3221 6.372659 GTCCATGAGAAAGTTGCTATCAGAAA 59.627 38.462 0.00 0.00 0.00 2.52
1524 3222 5.877012 GTCCATGAGAAAGTTGCTATCAGAA 59.123 40.000 0.00 0.00 0.00 3.02
1525 3223 5.046376 TGTCCATGAGAAAGTTGCTATCAGA 60.046 40.000 0.00 0.00 0.00 3.27
1526 3224 5.181009 TGTCCATGAGAAAGTTGCTATCAG 58.819 41.667 0.00 0.00 0.00 2.90
1530 3228 5.164620 TGATGTCCATGAGAAAGTTGCTA 57.835 39.130 0.00 0.00 0.00 3.49
1532 3230 4.639310 AGATGATGTCCATGAGAAAGTTGC 59.361 41.667 0.00 0.00 35.17 4.17
1534 3232 6.479006 TCAAGATGATGTCCATGAGAAAGTT 58.521 36.000 0.00 0.00 35.17 2.66
1535 3233 6.058553 TCAAGATGATGTCCATGAGAAAGT 57.941 37.500 0.00 0.00 35.17 2.66
1536 3234 5.527951 CCTCAAGATGATGTCCATGAGAAAG 59.472 44.000 0.00 0.00 40.85 2.62
1537 3235 5.434408 CCTCAAGATGATGTCCATGAGAAA 58.566 41.667 0.00 0.00 40.85 2.52
1538 3236 4.141551 CCCTCAAGATGATGTCCATGAGAA 60.142 45.833 0.00 0.00 40.85 2.87
1539 3237 3.390311 CCCTCAAGATGATGTCCATGAGA 59.610 47.826 0.00 0.00 40.85 3.27
1540 3238 3.390311 TCCCTCAAGATGATGTCCATGAG 59.610 47.826 0.00 0.00 39.35 2.90
1542 3240 3.136077 ACTCCCTCAAGATGATGTCCATG 59.864 47.826 0.00 0.00 35.17 3.66
1544 3242 2.502947 CACTCCCTCAAGATGATGTCCA 59.497 50.000 0.00 0.00 0.00 4.02
1545 3243 2.503356 ACACTCCCTCAAGATGATGTCC 59.497 50.000 0.00 0.00 0.00 4.02
1550 3248 1.625315 CACCACACTCCCTCAAGATGA 59.375 52.381 0.00 0.00 0.00 2.92
1551 3249 1.625315 TCACCACACTCCCTCAAGATG 59.375 52.381 0.00 0.00 0.00 2.90
1553 3251 1.625315 CATCACCACACTCCCTCAAGA 59.375 52.381 0.00 0.00 0.00 3.02
1555 3253 1.434188 ACATCACCACACTCCCTCAA 58.566 50.000 0.00 0.00 0.00 3.02
1556 3254 2.319025 TACATCACCACACTCCCTCA 57.681 50.000 0.00 0.00 0.00 3.86
1557 3255 3.914426 AATACATCACCACACTCCCTC 57.086 47.619 0.00 0.00 0.00 4.30
1559 3257 4.222124 AGAAATACATCACCACACTCCC 57.778 45.455 0.00 0.00 0.00 4.30
1560 3258 4.396166 CCAAGAAATACATCACCACACTCC 59.604 45.833 0.00 0.00 0.00 3.85
1561 3259 4.142600 GCCAAGAAATACATCACCACACTC 60.143 45.833 0.00 0.00 0.00 3.51
1563 3261 3.505680 TGCCAAGAAATACATCACCACAC 59.494 43.478 0.00 0.00 0.00 3.82
1564 3262 3.760738 TGCCAAGAAATACATCACCACA 58.239 40.909 0.00 0.00 0.00 4.17
1565 3263 4.989279 ATGCCAAGAAATACATCACCAC 57.011 40.909 0.00 0.00 0.00 4.16
1566 3264 6.663093 AGTTTATGCCAAGAAATACATCACCA 59.337 34.615 0.00 0.00 0.00 4.17
1568 3266 6.907212 CGAGTTTATGCCAAGAAATACATCAC 59.093 38.462 0.00 0.00 0.00 3.06
1569 3267 6.458206 GCGAGTTTATGCCAAGAAATACATCA 60.458 38.462 0.00 0.00 0.00 3.07
1570 3268 5.909610 GCGAGTTTATGCCAAGAAATACATC 59.090 40.000 0.00 0.00 0.00 3.06
1572 3270 4.941263 AGCGAGTTTATGCCAAGAAATACA 59.059 37.500 0.00 0.00 0.00 2.29
1573 3271 5.485662 AGCGAGTTTATGCCAAGAAATAC 57.514 39.130 0.00 0.00 0.00 1.89
1575 3273 6.699575 ATAAGCGAGTTTATGCCAAGAAAT 57.300 33.333 0.00 0.00 0.00 2.17
1576 3274 6.150307 TCAATAAGCGAGTTTATGCCAAGAAA 59.850 34.615 0.00 0.00 0.00 2.52
1577 3275 5.645929 TCAATAAGCGAGTTTATGCCAAGAA 59.354 36.000 0.00 0.00 0.00 2.52
1579 3277 5.484173 TCAATAAGCGAGTTTATGCCAAG 57.516 39.130 0.00 0.00 0.00 3.61
1580 3278 5.356751 ACATCAATAAGCGAGTTTATGCCAA 59.643 36.000 0.00 0.00 0.00 4.52
1583 3281 5.133264 CGACATCAATAAGCGAGTTTATGC 58.867 41.667 0.00 0.00 0.00 3.14
1584 3282 5.133264 GCGACATCAATAAGCGAGTTTATG 58.867 41.667 0.00 0.00 0.00 1.90
1587 3285 2.351726 GGCGACATCAATAAGCGAGTTT 59.648 45.455 0.00 0.00 0.00 2.66
1588 3286 1.933853 GGCGACATCAATAAGCGAGTT 59.066 47.619 0.00 0.00 0.00 3.01
1589 3287 1.571919 GGCGACATCAATAAGCGAGT 58.428 50.000 0.00 0.00 0.00 4.18
1590 3288 0.504384 CGGCGACATCAATAAGCGAG 59.496 55.000 0.00 0.00 0.00 5.03
1594 3292 1.202533 ACCTCCGGCGACATCAATAAG 60.203 52.381 9.30 0.00 0.00 1.73
1595 3293 0.828022 ACCTCCGGCGACATCAATAA 59.172 50.000 9.30 0.00 0.00 1.40
1598 3296 1.613317 ATGACCTCCGGCGACATCAA 61.613 55.000 9.30 0.00 0.00 2.57
1600 3298 1.592669 CATGACCTCCGGCGACATC 60.593 63.158 9.30 0.47 0.00 3.06
1603 3301 3.771160 ACCATGACCTCCGGCGAC 61.771 66.667 9.30 0.00 0.00 5.19
1605 3303 4.838152 CCACCATGACCTCCGGCG 62.838 72.222 0.00 0.00 0.00 6.46
1606 3304 3.391665 CTCCACCATGACCTCCGGC 62.392 68.421 0.00 0.00 0.00 6.13
1607 3305 2.903357 CTCCACCATGACCTCCGG 59.097 66.667 0.00 0.00 0.00 5.14
1609 3307 1.222936 CAGCTCCACCATGACCTCC 59.777 63.158 0.00 0.00 0.00 4.30
1610 3308 1.451028 GCAGCTCCACCATGACCTC 60.451 63.158 0.00 0.00 0.00 3.85
1611 3309 2.673523 GCAGCTCCACCATGACCT 59.326 61.111 0.00 0.00 0.00 3.85
1613 3311 1.748122 CTGGCAGCTCCACCATGAC 60.748 63.158 0.00 0.00 40.72 3.06
1615 3313 2.439701 CCTGGCAGCTCCACCATG 60.440 66.667 9.56 0.00 40.72 3.66
1616 3314 3.736224 CCCTGGCAGCTCCACCAT 61.736 66.667 9.56 0.00 40.72 3.55
1628 3326 0.679640 TGCCTTCGTAATTGCCCTGG 60.680 55.000 0.00 0.00 0.00 4.45
1629 3327 1.392589 ATGCCTTCGTAATTGCCCTG 58.607 50.000 0.00 0.00 0.00 4.45
1630 3328 2.024414 GAATGCCTTCGTAATTGCCCT 58.976 47.619 0.00 0.00 0.00 5.19
1632 3330 1.067060 GGGAATGCCTTCGTAATTGCC 59.933 52.381 0.00 0.00 35.11 4.52
1635 3333 1.021968 GCGGGAATGCCTTCGTAATT 58.978 50.000 0.00 0.00 31.75 1.40
1636 3334 0.107410 TGCGGGAATGCCTTCGTAAT 60.107 50.000 0.00 0.00 31.75 1.89
1637 3335 0.321741 TTGCGGGAATGCCTTCGTAA 60.322 50.000 0.00 0.00 31.75 3.18
1639 3337 0.965363 ATTTGCGGGAATGCCTTCGT 60.965 50.000 0.00 0.00 31.75 3.85
1640 3338 0.526096 CATTTGCGGGAATGCCTTCG 60.526 55.000 0.00 0.00 31.00 3.79
1641 3339 0.817013 TCATTTGCGGGAATGCCTTC 59.183 50.000 0.00 0.00 37.03 3.46
1642 3340 1.265236 TTCATTTGCGGGAATGCCTT 58.735 45.000 0.00 0.00 37.03 4.35
1643 3341 1.265236 TTTCATTTGCGGGAATGCCT 58.735 45.000 0.00 0.00 37.03 4.75
1644 3342 1.935199 CATTTCATTTGCGGGAATGCC 59.065 47.619 3.23 0.00 37.03 4.40
1645 3343 1.328374 GCATTTCATTTGCGGGAATGC 59.672 47.619 2.93 2.93 37.03 3.56
1646 3344 2.605818 CTGCATTTCATTTGCGGGAATG 59.394 45.455 0.00 0.00 43.10 2.67
1647 3345 2.896168 CTGCATTTCATTTGCGGGAAT 58.104 42.857 0.00 0.00 43.10 3.01
1648 3346 2.367030 CTGCATTTCATTTGCGGGAA 57.633 45.000 0.00 0.00 43.10 3.97
1652 3350 2.396601 ACACACTGCATTTCATTTGCG 58.603 42.857 0.00 0.00 43.10 4.85
1653 3351 3.059461 CCAACACACTGCATTTCATTTGC 60.059 43.478 0.00 0.00 40.55 3.68
1654 3352 4.370049 TCCAACACACTGCATTTCATTTG 58.630 39.130 0.00 0.00 0.00 2.32
1656 3354 4.525487 AGATCCAACACACTGCATTTCATT 59.475 37.500 0.00 0.00 0.00 2.57
1657 3355 4.084287 AGATCCAACACACTGCATTTCAT 58.916 39.130 0.00 0.00 0.00 2.57
1658 3356 3.489355 AGATCCAACACACTGCATTTCA 58.511 40.909 0.00 0.00 0.00 2.69
1660 3358 2.821969 GGAGATCCAACACACTGCATTT 59.178 45.455 0.00 0.00 35.64 2.32
1661 3359 2.440409 GGAGATCCAACACACTGCATT 58.560 47.619 0.00 0.00 35.64 3.56
1662 3360 1.340405 GGGAGATCCAACACACTGCAT 60.340 52.381 0.47 0.00 37.91 3.96
1663 3361 0.036732 GGGAGATCCAACACACTGCA 59.963 55.000 0.47 0.00 37.91 4.41
1664 3362 0.326264 AGGGAGATCCAACACACTGC 59.674 55.000 0.47 0.00 38.24 4.40
1665 3363 1.625315 TGAGGGAGATCCAACACACTG 59.375 52.381 0.47 0.00 38.24 3.66
1666 3364 2.030027 TGAGGGAGATCCAACACACT 57.970 50.000 0.47 0.00 38.24 3.55
1667 3365 2.026822 ACATGAGGGAGATCCAACACAC 60.027 50.000 0.00 0.00 38.24 3.82
1671 3369 1.561542 ACCACATGAGGGAGATCCAAC 59.438 52.381 14.11 0.00 38.24 3.77
1672 3370 1.971149 ACCACATGAGGGAGATCCAA 58.029 50.000 14.11 0.00 38.24 3.53
1673 3371 1.561076 CAACCACATGAGGGAGATCCA 59.439 52.381 14.11 0.00 38.24 3.41
1676 3374 0.994247 TGCAACCACATGAGGGAGAT 59.006 50.000 14.11 0.00 0.00 2.75
1677 3375 0.325933 CTGCAACCACATGAGGGAGA 59.674 55.000 14.11 0.00 0.00 3.71
1678 3376 0.325933 TCTGCAACCACATGAGGGAG 59.674 55.000 14.11 6.46 0.00 4.30
1679 3377 0.770499 TTCTGCAACCACATGAGGGA 59.230 50.000 14.11 0.00 0.00 4.20
1682 3380 1.467734 GAGCTTCTGCAACCACATGAG 59.532 52.381 0.00 0.00 42.74 2.90
1684 3382 0.524862 GGAGCTTCTGCAACCACATG 59.475 55.000 0.00 0.00 42.74 3.21
1685 3383 0.403271 AGGAGCTTCTGCAACCACAT 59.597 50.000 0.00 0.00 42.74 3.21
1688 3386 4.806936 CAGGAGCTTCTGCAACCA 57.193 55.556 9.65 0.00 42.74 3.67
1701 3399 0.393402 GCACATGGTCATCAGCAGGA 60.393 55.000 0.00 0.00 35.36 3.86
1702 3400 0.393944 AGCACATGGTCATCAGCAGG 60.394 55.000 0.00 0.00 37.81 4.85
1703 3401 0.733150 CAGCACATGGTCATCAGCAG 59.267 55.000 0.00 0.00 32.21 4.24
1708 3406 6.032094 CAGAAATAAACAGCACATGGTCATC 58.968 40.000 0.00 0.00 0.00 2.92
1712 3410 4.022068 CACCAGAAATAAACAGCACATGGT 60.022 41.667 0.00 0.00 39.03 3.55
1713 3411 4.218200 TCACCAGAAATAAACAGCACATGG 59.782 41.667 0.00 0.00 0.00 3.66
1714 3412 5.375417 TCACCAGAAATAAACAGCACATG 57.625 39.130 0.00 0.00 0.00 3.21
1715 3413 7.340232 ACATATCACCAGAAATAAACAGCACAT 59.660 33.333 0.00 0.00 0.00 3.21
1716 3414 6.658816 ACATATCACCAGAAATAAACAGCACA 59.341 34.615 0.00 0.00 0.00 4.57
1717 3415 7.088589 ACATATCACCAGAAATAAACAGCAC 57.911 36.000 0.00 0.00 0.00 4.40
1718 3416 7.701539 AACATATCACCAGAAATAAACAGCA 57.298 32.000 0.00 0.00 0.00 4.41
1728 3426 9.391006 GGAATGTACTTAAACATATCACCAGAA 57.609 33.333 0.00 0.00 39.16 3.02
1730 3428 8.612619 GTGGAATGTACTTAAACATATCACCAG 58.387 37.037 11.20 0.00 39.16 4.00
1731 3429 8.500753 GTGGAATGTACTTAAACATATCACCA 57.499 34.615 11.20 0.00 39.16 4.17
1732 3430 7.927048 GGTGGAATGTACTTAAACATATCACC 58.073 38.462 18.73 18.73 45.28 4.02
1736 3434 6.260050 CGCTGGTGGAATGTACTTAAACATAT 59.740 38.462 0.00 0.00 39.16 1.78
1737 3435 5.583061 CGCTGGTGGAATGTACTTAAACATA 59.417 40.000 0.00 0.00 39.16 2.29
1738 3436 4.394920 CGCTGGTGGAATGTACTTAAACAT 59.605 41.667 0.00 0.00 41.87 2.71
1741 3439 4.274602 TCGCTGGTGGAATGTACTTAAA 57.725 40.909 0.00 0.00 0.00 1.52
1742 3440 3.965379 TCGCTGGTGGAATGTACTTAA 57.035 42.857 0.00 0.00 0.00 1.85
1744 3442 2.851263 TTCGCTGGTGGAATGTACTT 57.149 45.000 0.00 0.00 0.00 2.24
1745 3443 2.632377 CATTCGCTGGTGGAATGTACT 58.368 47.619 6.40 0.00 43.55 2.73
1750 3448 1.754234 GGGCATTCGCTGGTGGAAT 60.754 57.895 0.00 0.00 38.60 3.01
1751 3449 2.361104 GGGCATTCGCTGGTGGAA 60.361 61.111 0.00 0.00 38.60 3.53
1753 3451 1.535204 AAAAGGGCATTCGCTGGTGG 61.535 55.000 0.00 0.00 38.60 4.61
1754 3452 0.109132 GAAAAGGGCATTCGCTGGTG 60.109 55.000 0.00 0.00 38.60 4.17
1755 3453 1.250840 GGAAAAGGGCATTCGCTGGT 61.251 55.000 0.00 0.00 38.60 4.00
1756 3454 0.967380 AGGAAAAGGGCATTCGCTGG 60.967 55.000 0.00 0.00 38.60 4.85
1757 3455 1.750193 TAGGAAAAGGGCATTCGCTG 58.250 50.000 0.00 0.00 38.60 5.18
1758 3456 2.507407 TTAGGAAAAGGGCATTCGCT 57.493 45.000 0.00 0.00 38.60 4.93
1795 3493 9.190317 GTGTTCCAAGGGAATAAGAAGAAATAT 57.810 33.333 0.38 0.00 44.04 1.28
1796 3494 8.167392 TGTGTTCCAAGGGAATAAGAAGAAATA 58.833 33.333 0.38 0.00 44.04 1.40
1797 3495 7.010160 TGTGTTCCAAGGGAATAAGAAGAAAT 58.990 34.615 0.38 0.00 44.04 2.17
1798 3496 6.369629 TGTGTTCCAAGGGAATAAGAAGAAA 58.630 36.000 0.38 0.00 44.04 2.52
1799 3497 5.947663 TGTGTTCCAAGGGAATAAGAAGAA 58.052 37.500 0.38 0.00 44.04 2.52
1801 3499 5.358160 GGATGTGTTCCAAGGGAATAAGAAG 59.642 44.000 0.38 0.00 44.04 2.85
1802 3500 5.261216 GGATGTGTTCCAAGGGAATAAGAA 58.739 41.667 0.38 0.00 44.04 2.52
1815 3513 8.902806 TGATATTACAAAATGAGGATGTGTTCC 58.097 33.333 0.00 0.00 45.85 3.62
1818 3516 9.412460 ACATGATATTACAAAATGAGGATGTGT 57.588 29.630 0.00 0.00 0.00 3.72
1858 3556 8.867935 CAGTTTGTTTCACATGACAATACAAAA 58.132 29.630 0.00 0.00 35.85 2.44
1859 3557 8.031864 ACAGTTTGTTTCACATGACAATACAAA 58.968 29.630 0.00 6.74 35.85 2.83
1862 3560 6.972328 ACACAGTTTGTTTCACATGACAATAC 59.028 34.615 0.00 1.72 33.09 1.89
1864 3562 5.964758 ACACAGTTTGTTTCACATGACAAT 58.035 33.333 0.00 0.00 33.09 2.71
1867 3565 7.985634 AAATACACAGTTTGTTTCACATGAC 57.014 32.000 0.00 0.00 39.91 3.06
1877 3575 9.509956 TGGCTAAATAGTAAATACACAGTTTGT 57.490 29.630 0.00 0.00 42.84 2.83
1885 3583 9.839817 TGCATAAGTGGCTAAATAGTAAATACA 57.160 29.630 0.00 0.00 0.00 2.29
1892 3590 9.745018 ATTGATATGCATAAGTGGCTAAATAGT 57.255 29.630 11.13 0.00 0.00 2.12
1896 3594 8.462589 TCAATTGATATGCATAAGTGGCTAAA 57.537 30.769 11.13 0.00 0.00 1.85
1897 3595 8.352201 GTTCAATTGATATGCATAAGTGGCTAA 58.648 33.333 11.13 0.00 0.00 3.09
1899 3597 6.239120 GGTTCAATTGATATGCATAAGTGGCT 60.239 38.462 11.13 0.00 0.00 4.75
1900 3598 5.922544 GGTTCAATTGATATGCATAAGTGGC 59.077 40.000 11.13 3.42 0.00 5.01
1901 3599 6.919662 GTGGTTCAATTGATATGCATAAGTGG 59.080 38.462 11.13 0.00 0.00 4.00
1902 3600 7.709947 AGTGGTTCAATTGATATGCATAAGTG 58.290 34.615 11.13 6.15 0.00 3.16
1903 3601 7.886629 AGTGGTTCAATTGATATGCATAAGT 57.113 32.000 11.13 0.00 0.00 2.24
1911 3609 7.123247 AGCTTGCTTTAGTGGTTCAATTGATAT 59.877 33.333 9.40 0.00 0.00 1.63
1912 3610 6.434028 AGCTTGCTTTAGTGGTTCAATTGATA 59.566 34.615 9.40 0.00 0.00 2.15
1913 3611 5.244626 AGCTTGCTTTAGTGGTTCAATTGAT 59.755 36.000 9.40 0.00 0.00 2.57
1917 3615 5.770162 AGTTAGCTTGCTTTAGTGGTTCAAT 59.230 36.000 0.00 0.00 0.00 2.57
1920 3618 6.796705 TTAGTTAGCTTGCTTTAGTGGTTC 57.203 37.500 0.00 0.00 0.00 3.62
1921 3619 7.761038 AATTAGTTAGCTTGCTTTAGTGGTT 57.239 32.000 0.00 0.00 0.00 3.67
1922 3620 7.761038 AAATTAGTTAGCTTGCTTTAGTGGT 57.239 32.000 0.00 0.00 0.00 4.16
1929 3627 8.792633 TGTCATACAAAATTAGTTAGCTTGCTT 58.207 29.630 0.00 0.00 0.00 3.91
1930 3628 8.335532 TGTCATACAAAATTAGTTAGCTTGCT 57.664 30.769 0.00 0.00 0.00 3.91
1931 3629 8.964420 TTGTCATACAAAATTAGTTAGCTTGC 57.036 30.769 0.00 0.00 34.76 4.01
1945 3643 7.648510 GGAAATTGTACGGTTTTGTCATACAAA 59.351 33.333 1.21 1.21 45.37 2.83
1946 3644 7.140048 GGAAATTGTACGGTTTTGTCATACAA 58.860 34.615 0.00 0.00 39.39 2.41
1947 3645 6.262496 TGGAAATTGTACGGTTTTGTCATACA 59.738 34.615 0.00 0.00 0.00 2.29
1948 3646 6.670233 TGGAAATTGTACGGTTTTGTCATAC 58.330 36.000 0.00 0.00 0.00 2.39
1949 3647 6.568844 GCTGGAAATTGTACGGTTTTGTCATA 60.569 38.462 0.00 0.00 0.00 2.15
1951 3649 4.498345 GCTGGAAATTGTACGGTTTTGTCA 60.498 41.667 0.00 0.00 0.00 3.58
1952 3650 3.978855 GCTGGAAATTGTACGGTTTTGTC 59.021 43.478 0.00 0.00 0.00 3.18
1953 3651 3.381908 TGCTGGAAATTGTACGGTTTTGT 59.618 39.130 0.00 0.00 0.00 2.83
1954 3652 3.971150 TGCTGGAAATTGTACGGTTTTG 58.029 40.909 0.00 0.00 0.00 2.44
1955 3653 4.864704 ATGCTGGAAATTGTACGGTTTT 57.135 36.364 0.00 0.00 0.00 2.43
1956 3654 4.864704 AATGCTGGAAATTGTACGGTTT 57.135 36.364 0.00 0.00 0.00 3.27
1957 3655 6.262273 CCTATAATGCTGGAAATTGTACGGTT 59.738 38.462 0.00 0.00 0.00 4.44
1958 3656 5.763204 CCTATAATGCTGGAAATTGTACGGT 59.237 40.000 0.00 0.00 0.00 4.83
1959 3657 5.181245 CCCTATAATGCTGGAAATTGTACGG 59.819 44.000 0.00 0.00 0.00 4.02
1960 3658 5.995282 TCCCTATAATGCTGGAAATTGTACG 59.005 40.000 0.00 0.00 0.00 3.67
1961 3659 6.206829 GGTCCCTATAATGCTGGAAATTGTAC 59.793 42.308 0.00 0.00 0.00 2.90
1965 3663 5.402054 TGGTCCCTATAATGCTGGAAATT 57.598 39.130 0.00 0.00 0.00 1.82
1970 3668 3.181429 ACCATTGGTCCCTATAATGCTGG 60.181 47.826 1.37 0.00 32.01 4.85
1971 3669 4.104383 ACCATTGGTCCCTATAATGCTG 57.896 45.455 1.37 0.00 32.01 4.41
1972 3670 5.133660 TGTTACCATTGGTCCCTATAATGCT 59.866 40.000 12.68 0.00 37.09 3.79
1973 3671 5.381757 TGTTACCATTGGTCCCTATAATGC 58.618 41.667 12.68 0.00 37.09 3.56
1974 3672 9.753674 AATATGTTACCATTGGTCCCTATAATG 57.246 33.333 12.68 0.00 37.09 1.90
1975 3673 9.975218 GAATATGTTACCATTGGTCCCTATAAT 57.025 33.333 12.68 1.25 37.09 1.28
2171 3949 7.370383 TGATAAAGAGATCAAACAAAACCTGC 58.630 34.615 0.00 0.00 32.84 4.85
2351 4129 8.282455 TGAGCAAAATATTAATAAACACCCGA 57.718 30.769 0.00 0.00 0.00 5.14
2391 4169 7.388776 TGAAGCATAGGCACATCATCTTAATAC 59.611 37.037 0.67 0.00 44.61 1.89
2431 4211 9.703892 GAACTGTAGATCATATGCTGAATAACT 57.296 33.333 0.00 0.00 37.44 2.24
2561 4824 2.026822 ACGAGCTGAATTCAGAACCCAT 60.027 45.455 34.43 14.57 46.59 4.00
2562 4825 1.347707 ACGAGCTGAATTCAGAACCCA 59.652 47.619 34.43 0.00 46.59 4.51
2563 4826 2.100605 ACGAGCTGAATTCAGAACCC 57.899 50.000 34.43 18.74 46.59 4.11
2564 4827 4.142881 GGTTTACGAGCTGAATTCAGAACC 60.143 45.833 34.43 29.64 46.59 3.62
2565 4828 4.691216 AGGTTTACGAGCTGAATTCAGAAC 59.309 41.667 34.43 26.02 46.59 3.01
2566 4829 4.894784 AGGTTTACGAGCTGAATTCAGAA 58.105 39.130 34.43 18.65 46.59 3.02
2567 4830 4.537135 AGGTTTACGAGCTGAATTCAGA 57.463 40.909 34.43 13.93 46.59 3.27
2568 4831 5.179368 TGAAAGGTTTACGAGCTGAATTCAG 59.821 40.000 27.82 27.82 46.40 3.02
2569 4832 5.049680 GTGAAAGGTTTACGAGCTGAATTCA 60.050 40.000 8.12 8.12 35.94 2.57
2570 4833 5.383130 GTGAAAGGTTTACGAGCTGAATTC 58.617 41.667 0.00 0.00 35.94 2.17
2571 4834 4.215613 GGTGAAAGGTTTACGAGCTGAATT 59.784 41.667 0.00 0.00 35.94 2.17
2572 4835 3.751698 GGTGAAAGGTTTACGAGCTGAAT 59.248 43.478 0.00 0.00 35.94 2.57
2573 4836 3.135994 GGTGAAAGGTTTACGAGCTGAA 58.864 45.455 0.00 0.00 35.94 3.02
2654 4919 1.290203 CGTAGATGGCGCACTCATTT 58.710 50.000 10.83 1.21 0.00 2.32
2655 4920 0.175760 ACGTAGATGGCGCACTCATT 59.824 50.000 10.83 0.00 0.00 2.57
2681 4946 5.449588 CCAAATTCTGACGGAGAAATCATGG 60.450 44.000 3.55 6.19 44.11 3.66
2684 4949 4.009675 CCCAAATTCTGACGGAGAAATCA 58.990 43.478 3.55 0.00 44.11 2.57
2783 14366 7.718334 TGTCAAAATAGAGGATAGTGACTCA 57.282 36.000 0.00 0.00 34.61 3.41
3292 14956 4.083110 CCAGATCACGAAAAGCTGATGTTT 60.083 41.667 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.