Multiple sequence alignment - TraesCS1D01G337900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G337900 chr1D 100.000 3317 0 0 1 3317 427333240 427329924 0.000000e+00 6126
1 TraesCS1D01G337900 chr1D 83.153 1662 229 34 997 2627 427372328 427370687 0.000000e+00 1471
2 TraesCS1D01G337900 chr1D 83.148 1436 212 19 974 2397 427319536 427318119 0.000000e+00 1284
3 TraesCS1D01G337900 chr1D 86.477 880 116 3 970 1848 427596942 427596065 0.000000e+00 963
4 TraesCS1D01G337900 chr1D 85.360 444 60 5 1893 2332 427595976 427595534 3.900000e-124 455
5 TraesCS1D01G337900 chr1B 91.218 1503 104 14 928 2403 578045514 578044013 0.000000e+00 2019
6 TraesCS1D01G337900 chr1B 86.183 883 109 11 970 1847 579778882 579778008 0.000000e+00 942
7 TraesCS1D01G337900 chr1B 85.912 866 120 2 1026 1890 577829243 577828379 0.000000e+00 922
8 TraesCS1D01G337900 chr1B 82.655 663 92 17 1982 2629 579001345 579000691 1.730000e-157 566
9 TraesCS1D01G337900 chr1B 84.910 444 62 5 1893 2332 579777923 579777481 8.440000e-121 444
10 TraesCS1D01G337900 chr1B 77.961 363 30 20 105 452 578046521 578046194 7.310000e-42 182
11 TraesCS1D01G337900 chr1B 89.524 105 7 3 1 103 624660105 624660207 2.690000e-26 130
12 TraesCS1D01G337900 chr1B 86.792 106 10 3 1 104 623736216 623736113 7.520000e-22 115
13 TraesCS1D01G337900 chr1B 89.744 78 8 0 2985 3062 577902146 577902069 2.110000e-17 100
14 TraesCS1D01G337900 chr1A 88.767 1460 141 14 926 2369 522516411 522514959 0.000000e+00 1766
15 TraesCS1D01G337900 chr1A 82.963 1667 228 39 997 2627 522535930 522534284 0.000000e+00 1454
16 TraesCS1D01G337900 chr1A 83.740 1433 205 25 979 2397 522510878 522509460 0.000000e+00 1330
17 TraesCS1D01G337900 chr1A 90.847 732 41 12 2598 3317 522514810 522514093 0.000000e+00 957
18 TraesCS1D01G337900 chr5D 83.716 1523 216 24 1029 2522 523314738 523313219 0.000000e+00 1410
19 TraesCS1D01G337900 chr5D 83.640 1522 219 22 1029 2522 523187549 523186030 0.000000e+00 1404
20 TraesCS1D01G337900 chr5D 87.379 103 10 3 1 101 448584704 448584603 7.520000e-22 115
21 TraesCS1D01G337900 chrUn 83.175 315 42 7 2217 2522 199132292 199132604 9.060000e-71 278
22 TraesCS1D01G337900 chrUn 83.175 315 42 7 2217 2522 352764321 352764633 9.060000e-71 278
23 TraesCS1D01G337900 chr2A 88.571 105 8 2 1 103 547783690 547783792 1.250000e-24 124
24 TraesCS1D01G337900 chr2A 89.000 100 6 3 3 100 30571247 30571343 5.810000e-23 119
25 TraesCS1D01G337900 chr3D 87.736 106 11 1 1 104 104088319 104088424 4.490000e-24 122
26 TraesCS1D01G337900 chr5A 87.850 107 8 3 1 104 59018373 59018269 1.620000e-23 121
27 TraesCS1D01G337900 chr3A 88.350 103 8 3 1 102 128129669 128129570 1.620000e-23 121
28 TraesCS1D01G337900 chr3A 87.500 104 9 3 1 101 644672640 644672538 2.090000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G337900 chr1D 427329924 427333240 3316 True 6126.0 6126 100.000000 1 3317 1 chr1D.!!$R2 3316
1 TraesCS1D01G337900 chr1D 427370687 427372328 1641 True 1471.0 1471 83.153000 997 2627 1 chr1D.!!$R3 1630
2 TraesCS1D01G337900 chr1D 427318119 427319536 1417 True 1284.0 1284 83.148000 974 2397 1 chr1D.!!$R1 1423
3 TraesCS1D01G337900 chr1D 427595534 427596942 1408 True 709.0 963 85.918500 970 2332 2 chr1D.!!$R4 1362
4 TraesCS1D01G337900 chr1B 578044013 578046521 2508 True 1100.5 2019 84.589500 105 2403 2 chr1B.!!$R5 2298
5 TraesCS1D01G337900 chr1B 577828379 577829243 864 True 922.0 922 85.912000 1026 1890 1 chr1B.!!$R1 864
6 TraesCS1D01G337900 chr1B 579777481 579778882 1401 True 693.0 942 85.546500 970 2332 2 chr1B.!!$R6 1362
7 TraesCS1D01G337900 chr1B 579000691 579001345 654 True 566.0 566 82.655000 1982 2629 1 chr1B.!!$R3 647
8 TraesCS1D01G337900 chr1A 522534284 522535930 1646 True 1454.0 1454 82.963000 997 2627 1 chr1A.!!$R1 1630
9 TraesCS1D01G337900 chr1A 522509460 522516411 6951 True 1351.0 1766 87.784667 926 3317 3 chr1A.!!$R2 2391
10 TraesCS1D01G337900 chr5D 523313219 523314738 1519 True 1410.0 1410 83.716000 1029 2522 1 chr5D.!!$R3 1493
11 TraesCS1D01G337900 chr5D 523186030 523187549 1519 True 1404.0 1404 83.640000 1029 2522 1 chr5D.!!$R2 1493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 418 0.178068 ACTGTACTGCCGCCCAATAG 59.822 55.0 0.0 0.0 0.0 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2768 0.31179 ATGCAACCAGAAAGCACACG 59.688 50.0 0.0 0.0 41.6 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.341867 CGAGAGTAATTGTTATGTCGCG 57.658 45.455 0.00 0.00 0.00 5.87
22 23 3.789756 CGAGAGTAATTGTTATGTCGCGT 59.210 43.478 5.77 0.00 0.00 6.01
23 24 4.086227 CGAGAGTAATTGTTATGTCGCGTC 60.086 45.833 5.77 0.00 0.00 5.19
24 25 4.995124 AGAGTAATTGTTATGTCGCGTCT 58.005 39.130 5.77 0.00 0.00 4.18
25 26 5.408356 AGAGTAATTGTTATGTCGCGTCTT 58.592 37.500 5.77 0.70 0.00 3.01
26 27 5.288712 AGAGTAATTGTTATGTCGCGTCTTG 59.711 40.000 5.77 0.00 0.00 3.02
27 28 3.740044 AATTGTTATGTCGCGTCTTGG 57.260 42.857 5.77 0.00 0.00 3.61
28 29 1.434555 TTGTTATGTCGCGTCTTGGG 58.565 50.000 5.77 0.00 0.00 4.12
29 30 0.319083 TGTTATGTCGCGTCTTGGGT 59.681 50.000 5.77 0.00 0.00 4.51
30 31 0.719465 GTTATGTCGCGTCTTGGGTG 59.281 55.000 5.77 0.00 0.00 4.61
31 32 0.319083 TTATGTCGCGTCTTGGGTGT 59.681 50.000 5.77 0.00 0.00 4.16
32 33 0.389296 TATGTCGCGTCTTGGGTGTG 60.389 55.000 5.77 0.00 0.00 3.82
33 34 2.279918 GTCGCGTCTTGGGTGTGT 60.280 61.111 5.77 0.00 0.00 3.72
34 35 1.885850 GTCGCGTCTTGGGTGTGTT 60.886 57.895 5.77 0.00 0.00 3.32
35 36 1.885388 TCGCGTCTTGGGTGTGTTG 60.885 57.895 5.77 0.00 0.00 3.33
36 37 2.177580 CGCGTCTTGGGTGTGTTGT 61.178 57.895 0.00 0.00 0.00 3.32
37 38 0.876777 CGCGTCTTGGGTGTGTTGTA 60.877 55.000 0.00 0.00 0.00 2.41
38 39 1.301423 GCGTCTTGGGTGTGTTGTAA 58.699 50.000 0.00 0.00 0.00 2.41
39 40 1.003223 GCGTCTTGGGTGTGTTGTAAC 60.003 52.381 0.00 0.00 0.00 2.50
40 41 2.281517 CGTCTTGGGTGTGTTGTAACA 58.718 47.619 0.00 0.00 36.38 2.41
41 42 2.678836 CGTCTTGGGTGTGTTGTAACAA 59.321 45.455 0.00 0.00 41.21 2.83
42 43 3.127203 CGTCTTGGGTGTGTTGTAACAAA 59.873 43.478 0.00 0.00 41.21 2.83
43 44 4.417506 GTCTTGGGTGTGTTGTAACAAAC 58.582 43.478 9.12 9.12 44.61 2.93
44 45 4.157105 GTCTTGGGTGTGTTGTAACAAACT 59.843 41.667 15.50 0.00 44.70 2.66
45 46 5.354792 GTCTTGGGTGTGTTGTAACAAACTA 59.645 40.000 15.50 5.19 44.70 2.24
46 47 6.038936 GTCTTGGGTGTGTTGTAACAAACTAT 59.961 38.462 15.50 0.00 44.70 2.12
47 48 7.227116 GTCTTGGGTGTGTTGTAACAAACTATA 59.773 37.037 15.50 2.90 44.70 1.31
48 49 7.940137 TCTTGGGTGTGTTGTAACAAACTATAT 59.060 33.333 15.50 0.00 44.70 0.86
49 50 8.466617 TTGGGTGTGTTGTAACAAACTATATT 57.533 30.769 15.50 0.00 44.70 1.28
50 51 8.101654 TGGGTGTGTTGTAACAAACTATATTC 57.898 34.615 15.50 1.10 44.70 1.75
51 52 7.940137 TGGGTGTGTTGTAACAAACTATATTCT 59.060 33.333 15.50 0.00 44.70 2.40
52 53 8.448615 GGGTGTGTTGTAACAAACTATATTCTC 58.551 37.037 15.50 0.00 44.70 2.87
53 54 9.216117 GGTGTGTTGTAACAAACTATATTCTCT 57.784 33.333 15.50 0.00 44.70 3.10
55 56 9.431887 TGTGTTGTAACAAACTATATTCTCTCC 57.568 33.333 0.00 0.00 41.21 3.71
56 57 9.654663 GTGTTGTAACAAACTATATTCTCTCCT 57.345 33.333 0.00 0.00 41.21 3.69
95 96 3.957383 GCTTTTGCCTCCGTTTCAA 57.043 47.368 0.00 0.00 40.15 2.69
96 97 2.217429 GCTTTTGCCTCCGTTTCAAA 57.783 45.000 0.00 0.00 40.15 2.69
97 98 2.545731 GCTTTTGCCTCCGTTTCAAAA 58.454 42.857 0.00 0.00 40.15 2.44
98 99 2.933260 GCTTTTGCCTCCGTTTCAAAAA 59.067 40.909 0.00 0.00 38.65 1.94
126 127 0.250513 AGGGCAGGATGTTCTTCGTC 59.749 55.000 0.00 0.00 39.31 4.20
128 129 0.389948 GGCAGGATGTTCTTCGTCGT 60.390 55.000 0.00 0.00 39.31 4.34
178 180 0.725117 GCATTGCTGGTGGTACGTAC 59.275 55.000 17.56 17.56 0.00 3.67
179 181 1.674817 GCATTGCTGGTGGTACGTACT 60.675 52.381 24.07 0.00 0.00 2.73
180 182 2.417651 GCATTGCTGGTGGTACGTACTA 60.418 50.000 24.07 16.71 0.00 1.82
181 183 3.184541 CATTGCTGGTGGTACGTACTAC 58.815 50.000 28.29 28.29 37.01 2.73
196 198 3.686726 CGTACTACGTAGTGTCCCTTTCT 59.313 47.826 33.23 9.08 45.73 2.52
216 218 3.311322 TCTTTTCTGGTAAACGTGCACAG 59.689 43.478 18.64 12.16 0.00 3.66
218 220 1.860676 TCTGGTAAACGTGCACAGTC 58.139 50.000 18.64 4.74 0.00 3.51
219 221 1.411246 TCTGGTAAACGTGCACAGTCT 59.589 47.619 18.64 5.30 0.00 3.24
220 222 2.159014 TCTGGTAAACGTGCACAGTCTT 60.159 45.455 18.64 13.51 0.00 3.01
221 223 2.612212 CTGGTAAACGTGCACAGTCTTT 59.388 45.455 18.64 10.31 0.00 2.52
222 224 3.011119 TGGTAAACGTGCACAGTCTTTT 58.989 40.909 18.64 9.65 0.00 2.27
223 225 3.181505 TGGTAAACGTGCACAGTCTTTTG 60.182 43.478 18.64 0.00 0.00 2.44
224 226 3.181504 GGTAAACGTGCACAGTCTTTTGT 60.182 43.478 18.64 0.30 0.00 2.83
232 234 3.848272 CACAGTCTTTTGTGTTGGTGT 57.152 42.857 0.00 0.00 42.68 4.16
233 235 3.758300 CACAGTCTTTTGTGTTGGTGTC 58.242 45.455 0.00 0.00 42.68 3.67
234 236 3.440173 CACAGTCTTTTGTGTTGGTGTCT 59.560 43.478 0.00 0.00 42.68 3.41
235 237 4.634004 CACAGTCTTTTGTGTTGGTGTCTA 59.366 41.667 0.00 0.00 42.68 2.59
236 238 4.634443 ACAGTCTTTTGTGTTGGTGTCTAC 59.366 41.667 0.00 0.00 0.00 2.59
237 239 4.634004 CAGTCTTTTGTGTTGGTGTCTACA 59.366 41.667 0.00 0.00 0.00 2.74
238 240 5.123186 CAGTCTTTTGTGTTGGTGTCTACAA 59.877 40.000 0.00 0.00 31.08 2.41
239 241 5.885912 AGTCTTTTGTGTTGGTGTCTACAAT 59.114 36.000 0.00 0.00 33.56 2.71
240 242 6.377146 AGTCTTTTGTGTTGGTGTCTACAATT 59.623 34.615 0.00 0.00 33.56 2.32
241 243 7.033185 GTCTTTTGTGTTGGTGTCTACAATTT 58.967 34.615 0.00 0.00 33.56 1.82
242 244 7.220108 GTCTTTTGTGTTGGTGTCTACAATTTC 59.780 37.037 0.00 0.00 33.56 2.17
249 251 4.452825 TGGTGTCTACAATTTCAACGGAA 58.547 39.130 0.00 0.00 0.00 4.30
271 278 7.744715 CGGAATTGTCACAAAATCTTGTACTAC 59.255 37.037 0.00 0.00 44.15 2.73
281 288 9.262358 ACAAAATCTTGTACTACACTCTCTTTC 57.738 33.333 0.00 0.00 44.14 2.62
296 309 7.549488 ACACTCTCTTTCCTCATAATAAAACGG 59.451 37.037 0.00 0.00 0.00 4.44
299 312 5.180271 TCTTTCCTCATAATAAAACGGCGT 58.820 37.500 6.77 6.77 0.00 5.68
308 321 1.301423 TAAAACGGCGTGCAAGTCTT 58.699 45.000 15.70 0.00 0.00 3.01
311 324 1.092921 AACGGCGTGCAAGTCTTTGA 61.093 50.000 15.70 0.00 36.36 2.69
312 325 1.082756 CGGCGTGCAAGTCTTTGAC 60.083 57.895 2.08 0.00 36.36 3.18
321 334 2.607635 GCAAGTCTTTGACGTGTTCTGA 59.392 45.455 13.26 0.00 42.33 3.27
322 335 3.302740 GCAAGTCTTTGACGTGTTCTGAG 60.303 47.826 13.26 0.00 42.33 3.35
323 336 4.112634 CAAGTCTTTGACGTGTTCTGAGA 58.887 43.478 0.00 0.00 37.29 3.27
328 341 5.960105 GTCTTTGACGTGTTCTGAGAAAAAG 59.040 40.000 0.00 2.60 0.00 2.27
333 349 5.747197 TGACGTGTTCTGAGAAAAAGAGTAC 59.253 40.000 5.31 0.00 0.00 2.73
339 355 7.010275 GTGTTCTGAGAAAAAGAGTACGAAACT 59.990 37.037 0.00 0.00 42.80 2.66
342 358 7.262772 TCTGAGAAAAAGAGTACGAAACTGAA 58.737 34.615 0.00 0.00 39.07 3.02
354 370 2.425668 CGAAACTGAAACCCAAACCTGT 59.574 45.455 0.00 0.00 0.00 4.00
355 371 3.119280 CGAAACTGAAACCCAAACCTGTT 60.119 43.478 0.00 0.00 0.00 3.16
370 386 2.231478 ACCTGTTGTGTCGATGTCCTAG 59.769 50.000 0.00 0.00 0.00 3.02
384 400 2.029649 TGTCCTAGTACAAAGTGCGGAC 60.030 50.000 0.00 0.00 39.79 4.79
388 404 3.192001 CCTAGTACAAAGTGCGGACTGTA 59.808 47.826 11.44 7.75 30.61 2.74
402 418 0.178068 ACTGTACTGCCGCCCAATAG 59.822 55.000 0.00 0.00 0.00 1.73
415 431 3.366052 CCCAATAGGCCACAAGTAAGT 57.634 47.619 5.01 0.00 0.00 2.24
416 432 3.279434 CCCAATAGGCCACAAGTAAGTC 58.721 50.000 5.01 0.00 0.00 3.01
417 433 3.308117 CCCAATAGGCCACAAGTAAGTCA 60.308 47.826 5.01 0.00 0.00 3.41
418 434 4.331968 CCAATAGGCCACAAGTAAGTCAA 58.668 43.478 5.01 0.00 0.00 3.18
419 435 4.156008 CCAATAGGCCACAAGTAAGTCAAC 59.844 45.833 5.01 0.00 0.00 3.18
433 449 2.771089 AGTCAACAAGTGATGCGACAT 58.229 42.857 0.00 0.00 38.90 3.06
440 456 4.673441 ACAAGTGATGCGACATCTAGTAC 58.327 43.478 16.93 9.37 0.00 2.73
449 465 4.106197 GCGACATCTAGTACAACAGGAAG 58.894 47.826 0.00 0.00 0.00 3.46
452 468 4.822026 ACATCTAGTACAACAGGAAGTGC 58.178 43.478 0.00 0.00 0.00 4.40
453 469 4.283467 ACATCTAGTACAACAGGAAGTGCA 59.717 41.667 0.00 0.00 0.00 4.57
454 470 5.046304 ACATCTAGTACAACAGGAAGTGCAT 60.046 40.000 0.00 0.00 0.00 3.96
455 471 4.820897 TCTAGTACAACAGGAAGTGCATG 58.179 43.478 0.00 0.00 0.00 4.06
456 472 3.492102 AGTACAACAGGAAGTGCATGT 57.508 42.857 0.00 0.00 44.60 3.21
465 481 6.892658 ACAGGAAGTGCATGTTTTACATAA 57.107 33.333 0.00 0.00 38.59 1.90
466 482 7.283625 ACAGGAAGTGCATGTTTTACATAAA 57.716 32.000 0.00 0.00 38.59 1.40
467 483 7.145323 ACAGGAAGTGCATGTTTTACATAAAC 58.855 34.615 0.00 0.00 38.59 2.01
468 484 6.586082 CAGGAAGTGCATGTTTTACATAAACC 59.414 38.462 0.00 0.00 36.53 3.27
469 485 6.493458 AGGAAGTGCATGTTTTACATAAACCT 59.507 34.615 0.00 0.00 36.53 3.50
470 486 7.015195 AGGAAGTGCATGTTTTACATAAACCTT 59.985 33.333 0.00 0.00 36.53 3.50
471 487 8.301002 GGAAGTGCATGTTTTACATAAACCTTA 58.699 33.333 0.00 0.00 36.53 2.69
472 488 9.124807 GAAGTGCATGTTTTACATAAACCTTAC 57.875 33.333 0.00 0.00 36.53 2.34
473 489 8.404107 AGTGCATGTTTTACATAAACCTTACT 57.596 30.769 0.00 0.00 36.53 2.24
474 490 8.512138 AGTGCATGTTTTACATAAACCTTACTC 58.488 33.333 0.00 0.00 36.53 2.59
475 491 8.293867 GTGCATGTTTTACATAAACCTTACTCA 58.706 33.333 0.00 0.00 36.53 3.41
476 492 8.851145 TGCATGTTTTACATAAACCTTACTCAA 58.149 29.630 0.00 0.00 36.53 3.02
477 493 9.855021 GCATGTTTTACATAAACCTTACTCAAT 57.145 29.630 0.00 0.00 36.53 2.57
480 496 9.357161 TGTTTTACATAAACCTTACTCAATGGT 57.643 29.630 0.00 0.00 35.29 3.55
483 499 6.737254 ACATAAACCTTACTCAATGGTTCG 57.263 37.500 0.00 0.00 42.53 3.95
484 500 5.123344 ACATAAACCTTACTCAATGGTTCGC 59.877 40.000 0.00 0.00 42.53 4.70
485 501 2.851263 ACCTTACTCAATGGTTCGCA 57.149 45.000 0.00 0.00 0.00 5.10
486 502 2.423577 ACCTTACTCAATGGTTCGCAC 58.576 47.619 0.00 0.00 0.00 5.34
487 503 2.224426 ACCTTACTCAATGGTTCGCACA 60.224 45.455 0.00 0.00 0.00 4.57
488 504 2.416547 CCTTACTCAATGGTTCGCACAG 59.583 50.000 0.00 0.00 0.00 3.66
489 505 3.325870 CTTACTCAATGGTTCGCACAGA 58.674 45.455 0.00 0.00 0.00 3.41
490 506 2.254546 ACTCAATGGTTCGCACAGAA 57.745 45.000 0.00 0.00 36.31 3.02
506 522 3.030291 ACAGAACATGTTTTCCTGCCAA 58.970 40.909 20.11 0.00 39.96 4.52
518 534 6.183360 TGTTTTCCTGCCAAGTGCTTAAAATA 60.183 34.615 0.00 0.00 42.00 1.40
560 578 7.330900 TCTTTACAACGGGAAAATTTGTACA 57.669 32.000 0.00 0.00 35.86 2.90
584 602 2.890311 CACTCAATAGGTGTGGCCAAAA 59.110 45.455 7.24 0.00 40.61 2.44
586 604 3.320826 ACTCAATAGGTGTGGCCAAAAAC 59.679 43.478 7.24 6.45 40.61 2.43
588 606 3.572255 TCAATAGGTGTGGCCAAAAACTC 59.428 43.478 7.24 0.00 40.61 3.01
589 607 2.738587 TAGGTGTGGCCAAAAACTCA 57.261 45.000 7.24 0.00 40.61 3.41
590 608 2.086610 AGGTGTGGCCAAAAACTCAT 57.913 45.000 7.24 0.00 40.61 2.90
591 609 1.963515 AGGTGTGGCCAAAAACTCATC 59.036 47.619 7.24 0.00 40.61 2.92
595 613 2.158475 TGTGGCCAAAAACTCATCTCCT 60.158 45.455 7.24 0.00 0.00 3.69
596 614 2.229784 GTGGCCAAAAACTCATCTCCTG 59.770 50.000 7.24 0.00 0.00 3.86
597 615 2.158475 TGGCCAAAAACTCATCTCCTGT 60.158 45.455 0.61 0.00 0.00 4.00
598 616 3.073798 TGGCCAAAAACTCATCTCCTGTA 59.926 43.478 0.61 0.00 0.00 2.74
599 617 3.440522 GGCCAAAAACTCATCTCCTGTAC 59.559 47.826 0.00 0.00 0.00 2.90
600 618 4.327680 GCCAAAAACTCATCTCCTGTACT 58.672 43.478 0.00 0.00 0.00 2.73
601 619 4.393371 GCCAAAAACTCATCTCCTGTACTC 59.607 45.833 0.00 0.00 0.00 2.59
602 620 5.799213 CCAAAAACTCATCTCCTGTACTCT 58.201 41.667 0.00 0.00 0.00 3.24
604 622 7.386851 CCAAAAACTCATCTCCTGTACTCTAA 58.613 38.462 0.00 0.00 0.00 2.10
605 623 8.043710 CCAAAAACTCATCTCCTGTACTCTAAT 58.956 37.037 0.00 0.00 0.00 1.73
650 668 8.438676 AAAACATATACAAGTGTAGGATCTGC 57.561 34.615 0.00 0.00 33.52 4.26
656 674 9.935241 ATATACAAGTGTAGGATCTGCATTTAG 57.065 33.333 0.00 0.00 33.52 1.85
708 755 4.660789 AAAATATCTCCTTGCACATGGC 57.339 40.909 0.00 0.00 45.13 4.40
726 775 7.647715 GCACATGGCGATTTAATTTGTAGTAAT 59.352 33.333 0.00 0.00 0.00 1.89
727 776 8.957028 CACATGGCGATTTAATTTGTAGTAATG 58.043 33.333 0.00 0.00 0.00 1.90
732 781 7.044314 GGCGATTTAATTTGTAGTAATGTGTGC 60.044 37.037 0.00 0.00 0.00 4.57
755 804 4.795268 CGATAGGCTTGACACATATACGT 58.205 43.478 0.00 0.00 0.00 3.57
756 805 5.220381 CGATAGGCTTGACACATATACGTT 58.780 41.667 0.00 0.00 0.00 3.99
757 806 5.342525 CGATAGGCTTGACACATATACGTTC 59.657 44.000 0.00 0.00 0.00 3.95
758 807 4.737855 AGGCTTGACACATATACGTTCT 57.262 40.909 0.00 0.00 0.00 3.01
759 808 5.086104 AGGCTTGACACATATACGTTCTT 57.914 39.130 0.00 0.00 0.00 2.52
761 810 4.630069 GGCTTGACACATATACGTTCTTGT 59.370 41.667 0.00 0.00 0.00 3.16
762 811 5.445939 GGCTTGACACATATACGTTCTTGTG 60.446 44.000 17.59 17.59 43.88 3.33
767 816 5.702622 CACATATACGTTCTTGTGTCAGG 57.297 43.478 13.28 0.00 35.79 3.86
774 823 4.255301 ACGTTCTTGTGTCAGGTTTGTAA 58.745 39.130 0.00 0.00 0.00 2.41
800 849 3.443099 TGAGAATCATCAGCTACGTGG 57.557 47.619 0.00 0.00 42.56 4.94
803 852 2.159043 AGAATCATCAGCTACGTGGTGG 60.159 50.000 14.26 2.33 43.76 4.61
805 854 1.262417 TCATCAGCTACGTGGTGGAA 58.738 50.000 14.26 1.02 43.76 3.53
806 855 1.204704 TCATCAGCTACGTGGTGGAAG 59.795 52.381 14.26 4.69 43.76 3.46
807 856 0.537188 ATCAGCTACGTGGTGGAAGG 59.463 55.000 14.26 0.00 43.76 3.46
808 857 0.541063 TCAGCTACGTGGTGGAAGGA 60.541 55.000 14.26 0.00 43.76 3.36
810 859 1.448013 GCTACGTGGTGGAAGGAGC 60.448 63.158 0.00 0.00 0.00 4.70
811 860 1.218316 CTACGTGGTGGAAGGAGCC 59.782 63.158 0.00 0.00 0.00 4.70
812 861 2.240162 CTACGTGGTGGAAGGAGCCC 62.240 65.000 0.00 0.00 0.00 5.19
813 862 3.636231 CGTGGTGGAAGGAGCCCA 61.636 66.667 0.00 0.00 0.00 5.36
818 867 3.170362 TGGAAGGAGCCCACAAGG 58.830 61.111 0.00 0.00 39.47 3.61
829 878 4.387343 CACAAGGGCATGGGGGCT 62.387 66.667 0.00 0.00 42.84 5.19
830 879 4.066139 ACAAGGGCATGGGGGCTC 62.066 66.667 0.00 0.00 42.84 4.70
837 1098 2.724273 GCATGGGGGCTCGCATTTT 61.724 57.895 14.45 0.00 43.45 1.82
839 1100 1.758122 ATGGGGGCTCGCATTTTCC 60.758 57.895 10.93 0.00 42.85 3.13
841 1102 2.418083 GGGGGCTCGCATTTTCCTG 61.418 63.158 0.00 0.00 0.00 3.86
851 1112 5.702865 CTCGCATTTTCCTGAATTTTCTCA 58.297 37.500 0.00 0.00 0.00 3.27
862 1123 6.724694 CTGAATTTTCTCAGGACTTCTCAG 57.275 41.667 0.00 0.00 39.39 3.35
863 1124 4.999950 TGAATTTTCTCAGGACTTCTCAGC 59.000 41.667 0.00 0.00 0.00 4.26
864 1125 2.732412 TTTCTCAGGACTTCTCAGCG 57.268 50.000 0.00 0.00 0.00 5.18
865 1126 1.911057 TTCTCAGGACTTCTCAGCGA 58.089 50.000 0.00 0.00 0.00 4.93
866 1127 2.136298 TCTCAGGACTTCTCAGCGAT 57.864 50.000 0.00 0.00 0.00 4.58
867 1128 1.747924 TCTCAGGACTTCTCAGCGATG 59.252 52.381 0.00 0.00 0.00 3.84
868 1129 1.476085 CTCAGGACTTCTCAGCGATGT 59.524 52.381 0.00 0.00 33.16 3.06
870 1131 3.089284 TCAGGACTTCTCAGCGATGTTA 58.911 45.455 0.00 0.00 30.88 2.41
871 1132 3.129462 TCAGGACTTCTCAGCGATGTTAG 59.871 47.826 0.00 0.00 30.88 2.34
873 1134 3.511934 AGGACTTCTCAGCGATGTTAGTT 59.488 43.478 0.00 0.00 30.88 2.24
874 1135 3.860536 GGACTTCTCAGCGATGTTAGTTC 59.139 47.826 0.00 0.00 30.88 3.01
875 1136 4.486090 GACTTCTCAGCGATGTTAGTTCA 58.514 43.478 0.00 0.00 30.88 3.18
876 1137 4.489810 ACTTCTCAGCGATGTTAGTTCAG 58.510 43.478 0.00 0.00 0.00 3.02
877 1138 4.021894 ACTTCTCAGCGATGTTAGTTCAGT 60.022 41.667 0.00 0.00 0.00 3.41
878 1139 3.838120 TCTCAGCGATGTTAGTTCAGTG 58.162 45.455 0.00 0.00 0.00 3.66
880 1141 2.560981 TCAGCGATGTTAGTTCAGTGGA 59.439 45.455 0.00 0.00 0.00 4.02
882 1143 3.369147 CAGCGATGTTAGTTCAGTGGAAG 59.631 47.826 0.00 0.00 32.62 3.46
883 1144 3.258372 AGCGATGTTAGTTCAGTGGAAGA 59.742 43.478 0.00 0.00 32.62 2.87
888 1149 6.401474 CGATGTTAGTTCAGTGGAAGACAATG 60.401 42.308 0.00 0.00 46.06 2.82
889 1150 5.680619 TGTTAGTTCAGTGGAAGACAATGT 58.319 37.500 0.00 0.00 45.00 2.71
890 1151 6.119536 TGTTAGTTCAGTGGAAGACAATGTT 58.880 36.000 0.00 0.00 45.00 2.71
892 1153 7.122055 TGTTAGTTCAGTGGAAGACAATGTTTT 59.878 33.333 0.00 0.00 45.00 2.43
893 1154 6.136541 AGTTCAGTGGAAGACAATGTTTTC 57.863 37.500 7.99 7.99 45.00 2.29
894 1155 4.811555 TCAGTGGAAGACAATGTTTTCG 57.188 40.909 9.99 0.00 45.00 3.46
895 1156 4.196193 TCAGTGGAAGACAATGTTTTCGT 58.804 39.130 9.99 0.00 45.00 3.85
898 1159 6.316640 TCAGTGGAAGACAATGTTTTCGTAAA 59.683 34.615 9.99 0.00 45.00 2.01
899 1160 6.413818 CAGTGGAAGACAATGTTTTCGTAAAC 59.586 38.462 10.38 10.38 40.15 2.01
900 1161 5.394322 GTGGAAGACAATGTTTTCGTAAACG 59.606 40.000 12.20 0.00 45.29 3.60
901 1162 4.907582 GGAAGACAATGTTTTCGTAAACGG 59.092 41.667 12.20 7.46 45.29 4.44
903 1164 4.839796 AGACAATGTTTTCGTAAACGGTG 58.160 39.130 12.20 13.56 45.29 4.94
904 1165 4.571580 AGACAATGTTTTCGTAAACGGTGA 59.428 37.500 19.92 3.51 45.29 4.02
905 1166 4.839796 ACAATGTTTTCGTAAACGGTGAG 58.160 39.130 19.92 9.29 45.29 3.51
906 1167 4.215965 CAATGTTTTCGTAAACGGTGAGG 58.784 43.478 12.20 0.00 45.29 3.86
907 1168 1.598601 TGTTTTCGTAAACGGTGAGGC 59.401 47.619 12.20 0.00 45.29 4.70
908 1169 0.860533 TTTTCGTAAACGGTGAGGCG 59.139 50.000 2.24 0.00 40.29 5.52
909 1170 1.559149 TTTCGTAAACGGTGAGGCGC 61.559 55.000 0.00 0.00 40.29 6.53
910 1171 3.484547 CGTAAACGGTGAGGCGCC 61.485 66.667 21.89 21.89 35.37 6.53
912 1173 1.216178 GTAAACGGTGAGGCGCCTA 59.784 57.895 32.97 15.45 0.00 3.93
913 1174 0.179092 GTAAACGGTGAGGCGCCTAT 60.179 55.000 32.97 9.00 0.00 2.57
914 1175 0.179094 TAAACGGTGAGGCGCCTATG 60.179 55.000 32.97 21.20 0.00 2.23
915 1176 2.869503 AAACGGTGAGGCGCCTATGG 62.870 60.000 32.97 20.99 0.00 2.74
916 1177 3.849951 CGGTGAGGCGCCTATGGT 61.850 66.667 32.97 6.98 0.00 3.55
917 1178 2.203070 GGTGAGGCGCCTATGGTG 60.203 66.667 32.97 0.00 36.10 4.17
918 1179 2.731571 GGTGAGGCGCCTATGGTGA 61.732 63.158 32.97 6.28 34.74 4.02
919 1180 1.447643 GTGAGGCGCCTATGGTGAT 59.552 57.895 32.97 4.00 34.74 3.06
920 1181 0.179045 GTGAGGCGCCTATGGTGATT 60.179 55.000 32.97 3.02 34.74 2.57
922 1183 1.230324 GAGGCGCCTATGGTGATTTC 58.770 55.000 32.97 9.38 34.74 2.17
923 1184 0.546122 AGGCGCCTATGGTGATTTCA 59.454 50.000 31.86 0.00 34.74 2.69
924 1185 1.143684 AGGCGCCTATGGTGATTTCAT 59.856 47.619 31.86 0.00 34.74 2.57
960 1249 8.984112 ATAACTAATTAGATGGCCCTACCTTA 57.016 34.615 19.38 3.34 40.22 2.69
964 1253 6.780198 AATTAGATGGCCCTACCTTATTCA 57.220 37.500 0.00 0.00 40.22 2.57
965 1254 5.825593 TTAGATGGCCCTACCTTATTCAG 57.174 43.478 0.00 0.00 40.22 3.02
968 1264 4.593634 AGATGGCCCTACCTTATTCAGTAC 59.406 45.833 0.00 0.00 40.22 2.73
994 1291 6.633500 TTTGCATATAAATAGACCAGCCAC 57.367 37.500 0.00 0.00 0.00 5.01
1000 1297 3.737559 AAATAGACCAGCCACCATGAA 57.262 42.857 0.00 0.00 0.00 2.57
1002 1299 2.715749 TAGACCAGCCACCATGAATG 57.284 50.000 0.00 0.00 0.00 2.67
1020 1317 1.031235 TGCATTCCACACACAACCAG 58.969 50.000 0.00 0.00 0.00 4.00
1026 1323 2.639065 TCCACACACAACCAGAGAAAC 58.361 47.619 0.00 0.00 0.00 2.78
1059 1358 0.105246 AAATGGCACCCACCCAAGAA 60.105 50.000 0.00 0.00 35.80 2.52
1072 1371 3.128242 CACCCAAGAAAAGCATAGCTCTG 59.872 47.826 0.00 0.00 38.25 3.35
1277 1576 1.080435 CGACTCATGCGTGTGCTCAT 61.080 55.000 5.68 0.00 43.34 2.90
1286 1585 1.501169 CGTGTGCTCATTGTGTCAGA 58.499 50.000 0.00 0.00 0.00 3.27
1439 1744 0.178990 ACTGTCACTGCCCCCTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
1464 1769 3.201290 CATGCACTCATGGTTCCTAGAC 58.799 50.000 0.00 0.00 44.84 2.59
1523 1828 1.244019 AACGTTTGGGAGATGGCTGC 61.244 55.000 0.00 0.00 0.00 5.25
1609 1914 6.078456 TGGATATCATTTTGAGGGAGTGTT 57.922 37.500 4.83 0.00 0.00 3.32
1750 2055 3.391296 TGTGGTTGAAGAAGCTCCTACTT 59.609 43.478 0.00 0.00 0.00 2.24
1751 2056 4.141482 TGTGGTTGAAGAAGCTCCTACTTT 60.141 41.667 0.00 0.00 0.00 2.66
1826 2131 1.819288 TGCTCTCTTCCTGAAGGTACG 59.181 52.381 7.03 0.00 38.88 3.67
1848 2160 4.851558 CGCCCTTTAGATTTTGTTTCTTCG 59.148 41.667 0.00 0.00 0.00 3.79
1989 2364 5.545658 ACAAATTACTGTGGCTAATCGTG 57.454 39.130 0.00 0.00 0.00 4.35
2086 2469 6.857437 AAAATTGCAAGGAAGCTATACCTT 57.143 33.333 4.94 12.15 45.87 3.50
2116 2499 3.266772 AGCTGGTGGAAAGGTGATAATCA 59.733 43.478 0.00 0.00 0.00 2.57
2160 2545 5.006386 GGGCCAGATGAGATTATAACAAGG 58.994 45.833 4.39 0.00 0.00 3.61
2281 2666 9.448438 TCAGCAACTACAAAATTATATCAGTGT 57.552 29.630 0.00 0.00 0.00 3.55
2375 2768 4.448537 TGTTAATAAACTGGCATGGCAC 57.551 40.909 19.43 5.81 36.51 5.01
2398 2793 1.114119 TGCTTTCTGGTTGCATGCCA 61.114 50.000 16.68 0.00 34.42 4.92
2421 2816 6.493115 CCATTGGCCTAATGTGGTGAATAATA 59.507 38.462 19.84 0.00 43.78 0.98
2463 2862 0.173481 GAGGTGTGAGCGCTGTGATA 59.827 55.000 18.48 0.00 0.00 2.15
2477 2876 5.369187 CGCTGTGATAAATGAATTAGCTCG 58.631 41.667 0.00 0.00 31.12 5.03
2488 2887 4.534168 TGAATTAGCTCGCGTACTGTATC 58.466 43.478 5.77 5.64 0.00 2.24
2489 2888 4.035909 TGAATTAGCTCGCGTACTGTATCA 59.964 41.667 5.77 7.98 0.00 2.15
2495 2901 3.301835 GCTCGCGTACTGTATCACAAATG 60.302 47.826 5.77 0.00 0.00 2.32
2497 2903 3.610677 TCGCGTACTGTATCACAAATGTG 59.389 43.478 5.77 7.22 46.91 3.21
2522 2929 8.867097 TGTGTAGAAGGTTACTAGAATCTGTTT 58.133 33.333 0.00 0.00 0.00 2.83
2566 2977 9.995594 ATTGGGGTAACATATGCTGATATTAAT 57.004 29.630 1.58 0.00 39.74 1.40
2591 3004 1.180029 ATGCCCATGTTTCAGTGCTC 58.820 50.000 0.00 0.00 0.00 4.26
2610 3026 3.487544 GCTCACTCTTGTTTTTCAGCGTT 60.488 43.478 0.00 0.00 0.00 4.84
2639 3055 4.243007 TCGTGAATCGATCTATGCATGT 57.757 40.909 10.16 0.00 44.01 3.21
2684 3108 0.608130 TATGCACGCTTGACAGTCCT 59.392 50.000 0.00 0.00 0.00 3.85
2691 3115 1.606480 CGCTTGACAGTCCTGTGTGAT 60.606 52.381 4.35 0.00 45.05 3.06
2739 3163 4.805719 GTCACTCATGCGACTATGATTGAA 59.194 41.667 14.60 3.33 43.68 2.69
2831 3255 6.958255 TGTTATCAATTATTCAGGTGATGCG 58.042 36.000 0.00 0.00 32.99 4.73
2841 3265 1.742761 AGGTGATGCGTTCCTGAATG 58.257 50.000 3.31 0.00 0.00 2.67
2851 3275 4.576873 TGCGTTCCTGAATGTCAGTTTAAA 59.423 37.500 4.65 0.00 42.80 1.52
2862 3286 5.782893 TGTCAGTTTAAATGGGACCAAAG 57.217 39.130 11.76 0.00 0.00 2.77
2908 3333 2.934553 CTGCCTCACACATACATGACTG 59.065 50.000 0.00 0.00 0.00 3.51
2944 3371 4.933400 ACACGTAGACTGTTTTGTGAAGTT 59.067 37.500 9.36 0.00 0.00 2.66
2963 3390 2.749621 GTTCCACATTGTGACCATCCTC 59.250 50.000 18.33 0.00 35.23 3.71
2983 3410 4.157656 CCTCGAGTTCTGACTTCTGAAGAT 59.842 45.833 23.36 8.15 35.88 2.40
2994 3421 5.698089 TGACTTCTGAAGATTACTTGCACTG 59.302 40.000 23.36 0.00 36.39 3.66
3042 3469 7.315247 TGGATATATTTTTGTGTCGACAAGG 57.685 36.000 21.95 0.00 43.03 3.61
3085 3512 3.006323 CCGGGATCAGTGGAGATAAAGAG 59.994 52.174 0.00 0.00 0.00 2.85
3096 3523 8.584157 CAGTGGAGATAAAGAGTAGCATATCTT 58.416 37.037 0.00 0.00 35.74 2.40
3099 3526 8.370940 TGGAGATAAAGAGTAGCATATCTTTGG 58.629 37.037 16.02 0.00 43.69 3.28
3101 3528 7.739825 AGATAAAGAGTAGCATATCTTTGGCA 58.260 34.615 16.02 0.00 43.69 4.92
3110 3537 4.223477 AGCATATCTTTGGCACCAAAACAT 59.777 37.500 15.34 12.23 44.07 2.71
3140 3567 6.156775 TCCTGGACATAATTCTGATCTTGTGA 59.843 38.462 0.00 0.00 0.00 3.58
3141 3568 6.259608 CCTGGACATAATTCTGATCTTGTGAC 59.740 42.308 0.00 0.00 0.00 3.67
3142 3569 6.950842 TGGACATAATTCTGATCTTGTGACT 58.049 36.000 0.00 0.00 0.00 3.41
3143 3570 7.397221 TGGACATAATTCTGATCTTGTGACTT 58.603 34.615 0.00 0.00 0.00 3.01
3144 3571 7.335171 TGGACATAATTCTGATCTTGTGACTTG 59.665 37.037 0.00 0.00 0.00 3.16
3145 3572 7.335422 GGACATAATTCTGATCTTGTGACTTGT 59.665 37.037 0.00 0.00 0.00 3.16
3146 3573 8.037382 ACATAATTCTGATCTTGTGACTTGTG 57.963 34.615 0.00 0.50 0.00 3.33
3152 3579 2.936919 TCTTGTGACTTGTGCTGGAT 57.063 45.000 0.00 0.00 0.00 3.41
3168 3595 6.126796 TGTGCTGGATATCATAAGAACCAAGA 60.127 38.462 4.83 0.00 0.00 3.02
3174 3601 9.607333 TGGATATCATAAGAACCAAGAGACTAT 57.393 33.333 4.83 0.00 0.00 2.12
3200 3627 0.514691 GTCAGCGTTGCTTCTTCAGG 59.485 55.000 0.00 0.00 36.40 3.86
3218 3645 2.169769 CAGGTGCTCGGAAACCCTATTA 59.830 50.000 6.03 0.00 37.13 0.98
3219 3646 3.046374 AGGTGCTCGGAAACCCTATTAT 58.954 45.455 6.03 0.00 37.13 1.28
3250 3677 3.201494 CTCTGGAGGACGATGCGT 58.799 61.111 0.00 0.00 45.10 5.24
3253 3680 3.723235 CTGGAGGACGATGCGTGGG 62.723 68.421 0.00 0.00 41.37 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.481472 CAAGACGCGACATAACAATTACTC 58.519 41.667 15.93 0.00 0.00 2.59
4 5 4.328983 CCAAGACGCGACATAACAATTACT 59.671 41.667 15.93 0.00 0.00 2.24
5 6 4.493545 CCCAAGACGCGACATAACAATTAC 60.494 45.833 15.93 0.00 0.00 1.89
7 8 2.418628 CCCAAGACGCGACATAACAATT 59.581 45.455 15.93 0.00 0.00 2.32
8 9 2.006888 CCCAAGACGCGACATAACAAT 58.993 47.619 15.93 0.00 0.00 2.71
9 10 1.270412 ACCCAAGACGCGACATAACAA 60.270 47.619 15.93 0.00 0.00 2.83
10 11 0.319083 ACCCAAGACGCGACATAACA 59.681 50.000 15.93 0.00 0.00 2.41
11 12 0.719465 CACCCAAGACGCGACATAAC 59.281 55.000 15.93 0.00 0.00 1.89
12 13 0.319083 ACACCCAAGACGCGACATAA 59.681 50.000 15.93 0.00 0.00 1.90
13 14 0.389296 CACACCCAAGACGCGACATA 60.389 55.000 15.93 0.00 0.00 2.29
14 15 1.667830 CACACCCAAGACGCGACAT 60.668 57.895 15.93 0.00 0.00 3.06
15 16 2.279851 CACACCCAAGACGCGACA 60.280 61.111 15.93 0.00 0.00 4.35
16 17 1.885850 AACACACCCAAGACGCGAC 60.886 57.895 15.93 6.86 0.00 5.19
17 18 1.885388 CAACACACCCAAGACGCGA 60.885 57.895 15.93 0.00 0.00 5.87
18 19 0.876777 TACAACACACCCAAGACGCG 60.877 55.000 3.53 3.53 0.00 6.01
19 20 1.003223 GTTACAACACACCCAAGACGC 60.003 52.381 0.00 0.00 0.00 5.19
20 21 2.281517 TGTTACAACACACCCAAGACG 58.718 47.619 0.00 0.00 33.17 4.18
21 22 4.157105 AGTTTGTTACAACACACCCAAGAC 59.843 41.667 0.00 0.00 39.72 3.01
22 23 4.337145 AGTTTGTTACAACACACCCAAGA 58.663 39.130 0.00 0.00 39.72 3.02
23 24 4.712122 AGTTTGTTACAACACACCCAAG 57.288 40.909 0.00 0.00 39.72 3.61
24 25 8.466617 AATATAGTTTGTTACAACACACCCAA 57.533 30.769 0.00 0.00 39.72 4.12
25 26 7.940137 AGAATATAGTTTGTTACAACACACCCA 59.060 33.333 0.00 0.00 39.72 4.51
26 27 8.331730 AGAATATAGTTTGTTACAACACACCC 57.668 34.615 0.00 0.00 39.72 4.61
27 28 9.216117 AGAGAATATAGTTTGTTACAACACACC 57.784 33.333 0.00 0.00 39.72 4.16
29 30 9.431887 GGAGAGAATATAGTTTGTTACAACACA 57.568 33.333 0.00 0.00 38.92 3.72
30 31 9.654663 AGGAGAGAATATAGTTTGTTACAACAC 57.345 33.333 0.00 0.12 38.92 3.32
58 59 9.264719 GCAAAAGCTTTGCCTCATATATTAAAT 57.735 29.630 13.54 0.00 39.38 1.40
59 60 8.647143 GCAAAAGCTTTGCCTCATATATTAAA 57.353 30.769 13.54 0.00 39.38 1.52
72 73 0.249447 AACGGAGGCAAAAGCTTTGC 60.249 50.000 13.54 17.13 44.22 3.68
73 74 2.127251 GAAACGGAGGCAAAAGCTTTG 58.873 47.619 13.54 8.26 0.00 2.77
74 75 1.754226 TGAAACGGAGGCAAAAGCTTT 59.246 42.857 5.69 5.69 0.00 3.51
75 76 1.398692 TGAAACGGAGGCAAAAGCTT 58.601 45.000 0.00 0.00 0.00 3.74
76 77 1.398692 TTGAAACGGAGGCAAAAGCT 58.601 45.000 0.00 0.00 0.00 3.74
77 78 2.217429 TTTGAAACGGAGGCAAAAGC 57.783 45.000 0.00 0.00 0.00 3.51
99 100 2.683211 ACATCCTGCCCTCTGTTTTT 57.317 45.000 0.00 0.00 0.00 1.94
100 101 2.108952 AGAACATCCTGCCCTCTGTTTT 59.891 45.455 0.00 0.00 32.28 2.43
101 102 1.707427 AGAACATCCTGCCCTCTGTTT 59.293 47.619 0.00 0.00 32.28 2.83
102 103 1.366319 AGAACATCCTGCCCTCTGTT 58.634 50.000 0.00 0.00 34.68 3.16
103 104 1.280421 GAAGAACATCCTGCCCTCTGT 59.720 52.381 0.00 0.00 0.00 3.41
104 105 1.741732 CGAAGAACATCCTGCCCTCTG 60.742 57.143 0.00 0.00 0.00 3.35
105 106 0.539051 CGAAGAACATCCTGCCCTCT 59.461 55.000 0.00 0.00 0.00 3.69
106 107 0.250513 ACGAAGAACATCCTGCCCTC 59.749 55.000 0.00 0.00 0.00 4.30
107 108 0.250513 GACGAAGAACATCCTGCCCT 59.749 55.000 0.00 0.00 0.00 5.19
108 109 1.084370 CGACGAAGAACATCCTGCCC 61.084 60.000 0.00 0.00 0.00 5.36
109 110 0.389948 ACGACGAAGAACATCCTGCC 60.390 55.000 0.00 0.00 0.00 4.85
126 127 0.171007 TAAAGACGGGCCTTCGTACG 59.829 55.000 9.53 9.53 43.96 3.67
128 129 2.762327 AGATTAAAGACGGGCCTTCGTA 59.238 45.455 7.05 0.00 43.96 3.43
178 180 5.634020 CAGAAAAGAAAGGGACACTACGTAG 59.366 44.000 20.97 20.97 0.00 3.51
179 181 5.510179 CCAGAAAAGAAAGGGACACTACGTA 60.510 44.000 0.00 0.00 0.00 3.57
180 182 4.377897 CAGAAAAGAAAGGGACACTACGT 58.622 43.478 0.00 0.00 0.00 3.57
181 183 3.746492 CCAGAAAAGAAAGGGACACTACG 59.254 47.826 0.00 0.00 0.00 3.51
182 184 4.715713 ACCAGAAAAGAAAGGGACACTAC 58.284 43.478 0.00 0.00 0.00 2.73
183 185 6.503560 TTACCAGAAAAGAAAGGGACACTA 57.496 37.500 0.00 0.00 0.00 2.74
184 186 3.953542 ACCAGAAAAGAAAGGGACACT 57.046 42.857 0.00 0.00 0.00 3.55
191 193 4.733405 GTGCACGTTTACCAGAAAAGAAAG 59.267 41.667 0.00 0.00 0.00 2.62
193 195 3.690139 TGTGCACGTTTACCAGAAAAGAA 59.310 39.130 13.13 0.00 0.00 2.52
196 198 3.011119 ACTGTGCACGTTTACCAGAAAA 58.989 40.909 13.13 0.00 0.00 2.29
216 218 5.554822 TTGTAGACACCAACACAAAAGAC 57.445 39.130 0.00 0.00 0.00 3.01
218 220 7.032580 TGAAATTGTAGACACCAACACAAAAG 58.967 34.615 0.00 0.00 34.79 2.27
219 221 6.925211 TGAAATTGTAGACACCAACACAAAA 58.075 32.000 0.00 0.00 34.79 2.44
220 222 6.516739 TGAAATTGTAGACACCAACACAAA 57.483 33.333 0.00 0.00 34.79 2.83
221 223 6.326375 GTTGAAATTGTAGACACCAACACAA 58.674 36.000 0.00 0.00 35.53 3.33
222 224 5.447954 CGTTGAAATTGTAGACACCAACACA 60.448 40.000 0.00 0.00 33.97 3.72
223 225 4.967575 CGTTGAAATTGTAGACACCAACAC 59.032 41.667 0.00 0.00 33.97 3.32
224 226 4.035792 CCGTTGAAATTGTAGACACCAACA 59.964 41.667 0.00 0.00 33.97 3.33
225 227 4.273969 TCCGTTGAAATTGTAGACACCAAC 59.726 41.667 0.00 0.00 0.00 3.77
226 228 4.452825 TCCGTTGAAATTGTAGACACCAA 58.547 39.130 0.00 0.00 0.00 3.67
227 229 4.074627 TCCGTTGAAATTGTAGACACCA 57.925 40.909 0.00 0.00 0.00 4.17
228 230 5.622770 ATTCCGTTGAAATTGTAGACACC 57.377 39.130 0.00 0.00 33.32 4.16
229 231 6.435428 ACAATTCCGTTGAAATTGTAGACAC 58.565 36.000 11.38 0.00 40.37 3.67
230 232 6.261158 TGACAATTCCGTTGAAATTGTAGACA 59.739 34.615 12.67 6.04 40.37 3.41
231 233 6.577427 GTGACAATTCCGTTGAAATTGTAGAC 59.423 38.462 12.67 9.58 40.37 2.59
232 234 6.261158 TGTGACAATTCCGTTGAAATTGTAGA 59.739 34.615 12.67 2.73 40.37 2.59
233 235 6.434596 TGTGACAATTCCGTTGAAATTGTAG 58.565 36.000 12.67 0.00 40.37 2.74
234 236 6.378710 TGTGACAATTCCGTTGAAATTGTA 57.621 33.333 12.67 0.00 40.37 2.41
235 237 5.255710 TGTGACAATTCCGTTGAAATTGT 57.744 34.783 12.57 12.57 40.37 2.71
236 238 6.580963 TTTGTGACAATTCCGTTGAAATTG 57.419 33.333 0.00 6.96 40.37 2.32
237 239 7.710475 AGATTTTGTGACAATTCCGTTGAAATT 59.290 29.630 0.00 0.00 40.37 1.82
238 240 7.209475 AGATTTTGTGACAATTCCGTTGAAAT 58.791 30.769 0.00 0.00 40.37 2.17
239 241 6.568869 AGATTTTGTGACAATTCCGTTGAAA 58.431 32.000 0.00 0.00 40.37 2.69
240 242 6.142818 AGATTTTGTGACAATTCCGTTGAA 57.857 33.333 0.00 0.00 40.37 2.69
241 243 5.766150 AGATTTTGTGACAATTCCGTTGA 57.234 34.783 0.00 0.00 40.37 3.18
242 244 5.748152 ACAAGATTTTGTGACAATTCCGTTG 59.252 36.000 0.00 3.03 45.54 4.10
249 251 8.677148 AGTGTAGTACAAGATTTTGTGACAAT 57.323 30.769 11.69 9.12 46.63 2.71
271 278 7.466050 GCCGTTTTATTATGAGGAAAGAGAGTG 60.466 40.741 0.00 0.00 0.00 3.51
281 288 2.353269 TGCACGCCGTTTTATTATGAGG 59.647 45.455 0.00 0.00 0.00 3.86
294 307 1.082756 GTCAAAGACTTGCACGCCG 60.083 57.895 0.00 0.00 32.14 6.46
296 309 0.654472 CACGTCAAAGACTTGCACGC 60.654 55.000 15.64 0.00 38.51 5.34
299 312 2.351418 CAGAACACGTCAAAGACTTGCA 59.649 45.455 3.88 0.00 35.63 4.08
308 321 5.175859 ACTCTTTTTCTCAGAACACGTCAA 58.824 37.500 0.00 0.00 0.00 3.18
311 324 4.738740 CGTACTCTTTTTCTCAGAACACGT 59.261 41.667 0.00 0.00 0.00 4.49
312 325 4.974275 TCGTACTCTTTTTCTCAGAACACG 59.026 41.667 0.00 0.00 32.59 4.49
321 334 6.037940 GGGTTTCAGTTTCGTACTCTTTTTCT 59.962 38.462 0.00 0.00 33.85 2.52
322 335 6.183360 TGGGTTTCAGTTTCGTACTCTTTTTC 60.183 38.462 0.00 0.00 33.85 2.29
323 336 5.648960 TGGGTTTCAGTTTCGTACTCTTTTT 59.351 36.000 0.00 0.00 33.85 1.94
328 341 4.260907 GGTTTGGGTTTCAGTTTCGTACTC 60.261 45.833 0.00 0.00 33.85 2.59
333 349 2.425668 ACAGGTTTGGGTTTCAGTTTCG 59.574 45.455 0.00 0.00 0.00 3.46
339 355 2.494073 GACACAACAGGTTTGGGTTTCA 59.506 45.455 0.00 0.00 35.96 2.69
342 358 1.099689 CGACACAACAGGTTTGGGTT 58.900 50.000 0.00 0.00 35.96 4.11
354 370 5.010314 ACTTTGTACTAGGACATCGACACAA 59.990 40.000 9.08 0.00 0.00 3.33
355 371 4.521639 ACTTTGTACTAGGACATCGACACA 59.478 41.667 9.08 0.00 0.00 3.72
370 386 2.729882 CAGTACAGTCCGCACTTTGTAC 59.270 50.000 1.74 1.74 43.76 2.90
384 400 0.532862 CCTATTGGGCGGCAGTACAG 60.533 60.000 12.47 0.39 0.00 2.74
395 411 3.279434 GACTTACTTGTGGCCTATTGGG 58.721 50.000 3.32 0.00 38.36 4.12
402 418 2.949644 ACTTGTTGACTTACTTGTGGCC 59.050 45.455 0.00 0.00 0.00 5.36
404 420 5.751680 CATCACTTGTTGACTTACTTGTGG 58.248 41.667 0.00 0.00 36.92 4.17
413 429 2.238942 TGTCGCATCACTTGTTGACT 57.761 45.000 0.00 0.00 36.92 3.41
414 430 2.738846 AGATGTCGCATCACTTGTTGAC 59.261 45.455 17.94 0.00 36.92 3.18
415 431 3.044235 AGATGTCGCATCACTTGTTGA 57.956 42.857 17.94 0.00 39.11 3.18
416 432 3.928992 ACTAGATGTCGCATCACTTGTTG 59.071 43.478 17.94 5.01 0.00 3.33
417 433 4.193826 ACTAGATGTCGCATCACTTGTT 57.806 40.909 17.94 3.57 0.00 2.83
418 434 3.876274 ACTAGATGTCGCATCACTTGT 57.124 42.857 17.94 10.01 0.00 3.16
419 435 4.672409 TGTACTAGATGTCGCATCACTTG 58.328 43.478 17.94 9.57 0.00 3.16
433 449 4.283467 ACATGCACTTCCTGTTGTACTAGA 59.717 41.667 0.00 0.00 0.00 2.43
440 456 4.930963 TGTAAAACATGCACTTCCTGTTG 58.069 39.130 3.51 0.00 33.60 3.33
449 465 8.293867 TGAGTAAGGTTTATGTAAAACATGCAC 58.706 33.333 2.83 0.03 39.53 4.57
454 470 9.357161 ACCATTGAGTAAGGTTTATGTAAAACA 57.643 29.630 3.63 0.00 35.38 2.83
457 473 8.723311 CGAACCATTGAGTAAGGTTTATGTAAA 58.277 33.333 0.00 0.00 45.15 2.01
458 474 7.148373 GCGAACCATTGAGTAAGGTTTATGTAA 60.148 37.037 0.00 0.00 45.15 2.41
459 475 6.314400 GCGAACCATTGAGTAAGGTTTATGTA 59.686 38.462 0.00 0.00 45.15 2.29
460 476 5.123344 GCGAACCATTGAGTAAGGTTTATGT 59.877 40.000 0.00 0.00 45.15 2.29
461 477 5.123186 TGCGAACCATTGAGTAAGGTTTATG 59.877 40.000 0.00 0.00 45.15 1.90
462 478 5.123344 GTGCGAACCATTGAGTAAGGTTTAT 59.877 40.000 0.00 0.00 45.15 1.40
463 479 4.453136 GTGCGAACCATTGAGTAAGGTTTA 59.547 41.667 0.00 0.00 45.15 2.01
464 480 3.252458 GTGCGAACCATTGAGTAAGGTTT 59.748 43.478 0.00 0.00 45.15 3.27
466 482 2.224426 TGTGCGAACCATTGAGTAAGGT 60.224 45.455 0.00 0.00 37.20 3.50
467 483 2.416547 CTGTGCGAACCATTGAGTAAGG 59.583 50.000 0.00 0.00 0.00 2.69
468 484 3.325870 TCTGTGCGAACCATTGAGTAAG 58.674 45.455 0.00 0.00 0.00 2.34
469 485 3.394674 TCTGTGCGAACCATTGAGTAA 57.605 42.857 0.00 0.00 0.00 2.24
470 486 3.064207 GTTCTGTGCGAACCATTGAGTA 58.936 45.455 0.00 0.00 45.00 2.59
471 487 1.873591 GTTCTGTGCGAACCATTGAGT 59.126 47.619 0.00 0.00 45.00 3.41
472 488 2.601481 GTTCTGTGCGAACCATTGAG 57.399 50.000 0.00 0.00 45.00 3.02
480 496 2.948979 AGGAAAACATGTTCTGTGCGAA 59.051 40.909 12.39 0.00 38.39 4.70
481 497 2.290367 CAGGAAAACATGTTCTGTGCGA 59.710 45.455 12.39 0.00 38.39 5.10
482 498 2.653890 CAGGAAAACATGTTCTGTGCG 58.346 47.619 12.39 0.00 38.39 5.34
483 499 2.397549 GCAGGAAAACATGTTCTGTGC 58.602 47.619 20.65 17.97 38.39 4.57
484 500 2.361757 TGGCAGGAAAACATGTTCTGTG 59.638 45.455 20.65 13.62 38.39 3.66
485 501 2.665165 TGGCAGGAAAACATGTTCTGT 58.335 42.857 20.65 8.00 40.84 3.41
486 502 3.068590 ACTTGGCAGGAAAACATGTTCTG 59.931 43.478 12.39 15.42 0.00 3.02
487 503 3.068590 CACTTGGCAGGAAAACATGTTCT 59.931 43.478 12.39 0.00 0.00 3.01
488 504 3.383761 CACTTGGCAGGAAAACATGTTC 58.616 45.455 12.39 0.00 0.00 3.18
489 505 2.483538 GCACTTGGCAGGAAAACATGTT 60.484 45.455 4.92 4.92 43.97 2.71
490 506 1.069049 GCACTTGGCAGGAAAACATGT 59.931 47.619 2.65 0.00 43.97 3.21
491 507 1.787012 GCACTTGGCAGGAAAACATG 58.213 50.000 2.65 0.00 43.97 3.21
499 515 8.947055 ATAAAATATTTTAAGCACTTGGCAGG 57.053 30.769 21.33 0.00 38.50 4.85
532 548 7.722363 ACAAATTTTCCCGTTGTAAAGATCTT 58.278 30.769 0.88 0.88 33.80 2.40
540 558 5.359009 TGGTTGTACAAATTTTCCCGTTGTA 59.641 36.000 10.51 0.00 36.83 2.41
545 563 4.036971 TGAGTGGTTGTACAAATTTTCCCG 59.963 41.667 10.51 0.00 0.00 5.14
552 570 6.206634 CACACCTATTGAGTGGTTGTACAAAT 59.793 38.462 10.51 0.82 39.63 2.32
553 571 5.529430 CACACCTATTGAGTGGTTGTACAAA 59.471 40.000 10.51 0.00 39.63 2.83
614 632 9.675464 CACTTGTATATGTTTTAAGGAGGGTTA 57.325 33.333 0.00 0.00 0.00 2.85
615 633 8.168058 ACACTTGTATATGTTTTAAGGAGGGTT 58.832 33.333 0.00 0.00 0.00 4.11
616 634 7.696017 ACACTTGTATATGTTTTAAGGAGGGT 58.304 34.615 0.00 0.00 0.00 4.34
617 635 9.326413 CTACACTTGTATATGTTTTAAGGAGGG 57.674 37.037 0.00 0.00 0.00 4.30
618 636 9.326413 CCTACACTTGTATATGTTTTAAGGAGG 57.674 37.037 0.00 0.00 0.00 4.30
624 642 9.542462 GCAGATCCTACACTTGTATATGTTTTA 57.458 33.333 0.00 0.00 0.00 1.52
626 644 7.564793 TGCAGATCCTACACTTGTATATGTTT 58.435 34.615 0.00 0.00 0.00 2.83
631 649 9.143155 TCTAAATGCAGATCCTACACTTGTATA 57.857 33.333 0.00 0.00 0.00 1.47
634 652 6.299805 TCTAAATGCAGATCCTACACTTGT 57.700 37.500 0.00 0.00 0.00 3.16
635 653 7.418840 GATCTAAATGCAGATCCTACACTTG 57.581 40.000 2.94 0.00 43.46 3.16
646 664 9.342308 CCCACTTATTTTAGATCTAAATGCAGA 57.658 33.333 24.84 12.62 35.27 4.26
656 674 5.915175 ACCGAGTCCCACTTATTTTAGATC 58.085 41.667 0.00 0.00 0.00 2.75
686 733 4.440525 CGCCATGTGCAAGGAGATATTTTT 60.441 41.667 5.35 0.00 41.33 1.94
693 740 0.035152 AATCGCCATGTGCAAGGAGA 60.035 50.000 9.36 9.36 41.33 3.71
696 743 2.937469 TTAAATCGCCATGTGCAAGG 57.063 45.000 0.00 0.00 41.33 3.61
702 749 8.682710 ACATTACTACAAATTAAATCGCCATGT 58.317 29.630 0.00 0.00 0.00 3.21
707 754 7.044314 GGCACACATTACTACAAATTAAATCGC 60.044 37.037 0.00 0.00 0.00 4.58
708 755 7.163520 CGGCACACATTACTACAAATTAAATCG 59.836 37.037 0.00 0.00 0.00 3.34
718 767 4.316205 CCTATCGGCACACATTACTACA 57.684 45.455 0.00 0.00 0.00 2.74
732 781 4.166523 CGTATATGTGTCAAGCCTATCGG 58.833 47.826 0.00 0.00 0.00 4.18
745 794 5.168569 ACCTGACACAAGAACGTATATGTG 58.831 41.667 19.76 19.76 46.52 3.21
748 797 6.228258 ACAAACCTGACACAAGAACGTATAT 58.772 36.000 0.00 0.00 0.00 0.86
752 801 2.706890 ACAAACCTGACACAAGAACGT 58.293 42.857 0.00 0.00 0.00 3.99
753 802 4.868450 TTACAAACCTGACACAAGAACG 57.132 40.909 0.00 0.00 0.00 3.95
755 804 8.783093 CATTCTATTACAAACCTGACACAAGAA 58.217 33.333 0.00 0.00 0.00 2.52
756 805 8.154203 TCATTCTATTACAAACCTGACACAAGA 58.846 33.333 0.00 0.00 0.00 3.02
757 806 8.322906 TCATTCTATTACAAACCTGACACAAG 57.677 34.615 0.00 0.00 0.00 3.16
758 807 8.154203 TCTCATTCTATTACAAACCTGACACAA 58.846 33.333 0.00 0.00 0.00 3.33
759 808 7.676004 TCTCATTCTATTACAAACCTGACACA 58.324 34.615 0.00 0.00 0.00 3.72
761 810 9.383519 GATTCTCATTCTATTACAAACCTGACA 57.616 33.333 0.00 0.00 0.00 3.58
762 811 9.383519 TGATTCTCATTCTATTACAAACCTGAC 57.616 33.333 0.00 0.00 0.00 3.51
767 816 9.875675 GCTGATGATTCTCATTCTATTACAAAC 57.124 33.333 0.00 0.00 37.20 2.93
774 823 7.089538 CACGTAGCTGATGATTCTCATTCTAT 58.910 38.462 0.00 0.00 37.20 1.98
788 837 0.537188 CCTTCCACCACGTAGCTGAT 59.463 55.000 0.00 0.00 0.00 2.90
789 838 0.541063 TCCTTCCACCACGTAGCTGA 60.541 55.000 0.00 0.00 0.00 4.26
795 844 3.637273 GGGCTCCTTCCACCACGT 61.637 66.667 0.00 0.00 0.00 4.49
796 845 3.636231 TGGGCTCCTTCCACCACG 61.636 66.667 0.00 0.00 0.00 4.94
797 846 2.034221 GTGGGCTCCTTCCACCAC 59.966 66.667 2.07 0.00 46.58 4.16
812 861 4.387343 AGCCCCCATGCCCTTGTG 62.387 66.667 0.00 0.00 0.00 3.33
813 862 4.066139 GAGCCCCCATGCCCTTGT 62.066 66.667 0.00 0.00 0.00 3.16
819 868 2.633681 GAAAATGCGAGCCCCCATGC 62.634 60.000 0.00 0.00 0.00 4.06
820 869 1.438814 GAAAATGCGAGCCCCCATG 59.561 57.895 0.00 0.00 0.00 3.66
821 870 1.758122 GGAAAATGCGAGCCCCCAT 60.758 57.895 0.00 0.00 0.00 4.00
822 871 2.362375 GGAAAATGCGAGCCCCCA 60.362 61.111 0.00 0.00 0.00 4.96
823 872 2.043953 AGGAAAATGCGAGCCCCC 60.044 61.111 0.00 0.00 0.00 5.40
824 873 0.965363 TTCAGGAAAATGCGAGCCCC 60.965 55.000 0.00 0.00 0.00 5.80
826 875 2.947448 AATTCAGGAAAATGCGAGCC 57.053 45.000 0.00 0.00 0.00 4.70
827 876 4.488879 AGAAAATTCAGGAAAATGCGAGC 58.511 39.130 0.00 0.00 0.00 5.03
829 878 5.702865 CTGAGAAAATTCAGGAAAATGCGA 58.297 37.500 0.00 0.00 40.69 5.10
839 1100 5.122082 GCTGAGAAGTCCTGAGAAAATTCAG 59.878 44.000 0.00 0.00 43.35 3.02
841 1102 4.092675 CGCTGAGAAGTCCTGAGAAAATTC 59.907 45.833 0.00 0.00 0.00 2.17
851 1112 3.093057 ACTAACATCGCTGAGAAGTCCT 58.907 45.455 0.00 0.00 29.49 3.85
853 1114 4.486090 TGAACTAACATCGCTGAGAAGTC 58.514 43.478 0.00 0.00 29.49 3.01
854 1115 4.021894 ACTGAACTAACATCGCTGAGAAGT 60.022 41.667 0.00 0.00 31.26 3.01
855 1116 4.325741 CACTGAACTAACATCGCTGAGAAG 59.674 45.833 0.00 0.00 0.00 2.85
857 1118 3.367395 CCACTGAACTAACATCGCTGAGA 60.367 47.826 0.00 0.00 0.00 3.27
858 1119 2.926200 CCACTGAACTAACATCGCTGAG 59.074 50.000 0.00 0.00 0.00 3.35
859 1120 2.560981 TCCACTGAACTAACATCGCTGA 59.439 45.455 0.00 0.00 0.00 4.26
860 1121 2.959516 TCCACTGAACTAACATCGCTG 58.040 47.619 0.00 0.00 0.00 5.18
862 1123 3.368236 GTCTTCCACTGAACTAACATCGC 59.632 47.826 0.00 0.00 0.00 4.58
863 1124 4.556233 TGTCTTCCACTGAACTAACATCG 58.444 43.478 0.00 0.00 0.00 3.84
864 1125 6.428159 ACATTGTCTTCCACTGAACTAACATC 59.572 38.462 0.00 0.00 0.00 3.06
865 1126 6.299141 ACATTGTCTTCCACTGAACTAACAT 58.701 36.000 0.00 0.00 0.00 2.71
866 1127 5.680619 ACATTGTCTTCCACTGAACTAACA 58.319 37.500 0.00 0.00 0.00 2.41
867 1128 6.619801 AACATTGTCTTCCACTGAACTAAC 57.380 37.500 0.00 0.00 0.00 2.34
868 1129 7.466725 CGAAAACATTGTCTTCCACTGAACTAA 60.467 37.037 0.00 0.00 0.00 2.24
870 1131 5.220854 CGAAAACATTGTCTTCCACTGAACT 60.221 40.000 0.00 0.00 0.00 3.01
871 1132 4.970003 CGAAAACATTGTCTTCCACTGAAC 59.030 41.667 0.00 0.00 0.00 3.18
873 1134 4.196193 ACGAAAACATTGTCTTCCACTGA 58.804 39.130 0.00 0.00 0.00 3.41
874 1135 4.552166 ACGAAAACATTGTCTTCCACTG 57.448 40.909 0.00 0.00 0.00 3.66
875 1136 6.492254 GTTTACGAAAACATTGTCTTCCACT 58.508 36.000 0.00 0.00 43.73 4.00
876 1137 5.394322 CGTTTACGAAAACATTGTCTTCCAC 59.606 40.000 0.00 0.00 44.37 4.02
877 1138 5.503498 CGTTTACGAAAACATTGTCTTCCA 58.497 37.500 0.00 0.00 44.37 3.53
878 1139 4.907582 CCGTTTACGAAAACATTGTCTTCC 59.092 41.667 3.46 0.00 44.37 3.46
880 1141 5.064962 TCACCGTTTACGAAAACATTGTCTT 59.935 36.000 3.46 0.00 44.37 3.01
882 1143 4.835344 TCACCGTTTACGAAAACATTGTC 58.165 39.130 3.46 0.00 44.37 3.18
883 1144 4.260866 CCTCACCGTTTACGAAAACATTGT 60.261 41.667 3.46 0.00 44.37 2.71
888 1149 1.397567 CGCCTCACCGTTTACGAAAAC 60.398 52.381 3.46 0.00 43.02 2.43
889 1150 0.860533 CGCCTCACCGTTTACGAAAA 59.139 50.000 3.46 0.00 43.02 2.29
890 1151 1.559149 GCGCCTCACCGTTTACGAAA 61.559 55.000 3.46 0.00 43.02 3.46
892 1153 2.431260 GCGCCTCACCGTTTACGA 60.431 61.111 3.46 0.00 43.02 3.43
893 1154 2.546645 TAGGCGCCTCACCGTTTACG 62.547 60.000 36.73 0.00 39.44 3.18
894 1155 0.179092 ATAGGCGCCTCACCGTTTAC 60.179 55.000 36.73 0.00 0.00 2.01
895 1156 0.179094 CATAGGCGCCTCACCGTTTA 60.179 55.000 36.73 14.03 0.00 2.01
898 1159 3.849951 CCATAGGCGCCTCACCGT 61.850 66.667 36.73 11.27 0.00 4.83
899 1160 3.849951 ACCATAGGCGCCTCACCG 61.850 66.667 36.73 21.01 0.00 4.94
900 1161 2.044806 ATCACCATAGGCGCCTCACC 62.045 60.000 36.73 1.08 0.00 4.02
901 1162 0.179045 AATCACCATAGGCGCCTCAC 60.179 55.000 36.73 1.58 0.00 3.51
903 1164 1.230324 GAAATCACCATAGGCGCCTC 58.770 55.000 36.73 11.22 0.00 4.70
904 1165 0.546122 TGAAATCACCATAGGCGCCT 59.454 50.000 34.85 34.85 0.00 5.52
905 1166 1.537202 GATGAAATCACCATAGGCGCC 59.463 52.381 21.89 21.89 44.70 6.53
906 1167 2.977405 GATGAAATCACCATAGGCGC 57.023 50.000 0.00 0.00 44.70 6.53
946 1235 4.593634 AGTACTGAATAAGGTAGGGCCATC 59.406 45.833 6.18 0.00 40.61 3.51
968 1264 8.454106 GTGGCTGGTCTATTTATATGCAAATAG 58.546 37.037 8.88 8.88 44.52 1.73
994 1291 2.231721 TGTGTGTGGAATGCATTCATGG 59.768 45.455 34.08 0.00 38.53 3.66
1000 1297 1.614903 CTGGTTGTGTGTGGAATGCAT 59.385 47.619 0.00 0.00 0.00 3.96
1002 1299 1.267806 CTCTGGTTGTGTGTGGAATGC 59.732 52.381 0.00 0.00 0.00 3.56
1020 1317 3.698029 TTTGCTGAGCTTGTGTTTCTC 57.302 42.857 5.83 0.00 0.00 2.87
1026 1323 1.796459 GCCATTTTTGCTGAGCTTGTG 59.204 47.619 5.83 0.00 0.00 3.33
1059 1358 3.871485 CAACTCCTCAGAGCTATGCTTT 58.129 45.455 2.68 0.00 44.65 3.51
1085 1384 1.203287 GCCAAAGATCAACTTGAGCCC 59.797 52.381 3.36 0.00 38.98 5.19
1209 1508 1.899617 CCCAATCTTTGCGGCCAAT 59.100 52.632 2.24 0.00 0.00 3.16
1277 1576 5.414144 TGAACAACAAAGATGTCTGACACAA 59.586 36.000 13.50 0.00 39.40 3.33
1286 1585 6.294176 GGCTACTTCATGAACAACAAAGATGT 60.294 38.462 3.38 0.00 43.14 3.06
1464 1769 1.811266 CAGGGACGTGGAATGCTCG 60.811 63.158 0.00 0.00 0.00 5.03
1523 1828 4.315803 CTGGTTGTAAGTACTGTTCTGGG 58.684 47.826 0.00 0.00 0.00 4.45
1596 1901 1.843851 ACACCAGAACACTCCCTCAAA 59.156 47.619 0.00 0.00 0.00 2.69
1609 1914 6.245408 ACTTTATGCCAAGAAATACACCAGA 58.755 36.000 0.00 0.00 0.00 3.86
1673 1978 0.811281 GAACGCCTTAGCAATTGCCT 59.189 50.000 26.45 15.86 43.38 4.75
1826 2131 4.621460 GCGAAGAAACAAAATCTAAAGGGC 59.379 41.667 0.00 0.00 0.00 5.19
1968 2343 5.121611 TGTCACGATTAGCCACAGTAATTTG 59.878 40.000 0.00 0.00 0.00 2.32
1970 2345 4.827692 TGTCACGATTAGCCACAGTAATT 58.172 39.130 0.00 0.00 0.00 1.40
2116 2499 4.537688 CCCAGATCCAACCACCATATCTAT 59.462 45.833 0.00 0.00 0.00 1.98
2152 2537 4.724279 AAACCTGTGTCTCCCTTGTTAT 57.276 40.909 0.00 0.00 0.00 1.89
2160 2545 4.580580 AGATCAAACAAAACCTGTGTCTCC 59.419 41.667 0.00 0.00 38.67 3.71
2281 2666 6.156949 AGCTCAATAACAGATCTAACTCCCAA 59.843 38.462 0.00 0.00 0.00 4.12
2375 2768 0.311790 ATGCAACCAGAAAGCACACG 59.688 50.000 0.00 0.00 41.60 4.49
2398 2793 9.243105 GTATATTATTCACCACATTAGGCCAAT 57.757 33.333 5.01 0.00 0.00 3.16
2421 2816 9.326413 CCTCGGAAAAATACAATAAGACAGTAT 57.674 33.333 0.00 0.00 0.00 2.12
2442 2841 4.363990 ACAGCGCTCACACCTCGG 62.364 66.667 7.13 0.00 0.00 4.63
2463 2862 4.181578 ACAGTACGCGAGCTAATTCATTT 58.818 39.130 15.93 0.00 0.00 2.32
2489 2888 7.959175 TCTAGTAACCTTCTACACACATTTGT 58.041 34.615 0.00 0.00 35.84 2.83
2495 2901 7.828712 ACAGATTCTAGTAACCTTCTACACAC 58.171 38.462 0.00 0.00 0.00 3.82
2529 2936 4.037927 TGTTACCCCAATTCCCACAAAAA 58.962 39.130 0.00 0.00 0.00 1.94
2537 2948 4.469657 TCAGCATATGTTACCCCAATTCC 58.530 43.478 4.29 0.00 0.00 3.01
2566 2977 3.884693 CACTGAAACATGGGCATAGCATA 59.115 43.478 0.00 0.00 0.00 3.14
2575 2988 1.808945 GAGTGAGCACTGAAACATGGG 59.191 52.381 8.03 0.00 42.66 4.00
2591 3004 5.156804 ACTAACGCTGAAAAACAAGAGTG 57.843 39.130 0.00 0.00 0.00 3.51
2629 3045 9.448438 AATCTAAACAACTTACACATGCATAGA 57.552 29.630 0.00 0.00 0.00 1.98
2691 3115 3.849574 TCCATGGAAGAAAGTATGTGGGA 59.150 43.478 13.46 0.00 0.00 4.37
2763 3187 1.025041 GGGTGCAGCTTACTAATGCC 58.975 55.000 16.65 0.00 39.22 4.40
2785 3209 5.063691 ACAACAATTTGAACACAACAGCATG 59.936 36.000 2.79 0.00 38.17 4.06
2841 3265 4.560716 GCCTTTGGTCCCATTTAAACTGAC 60.561 45.833 0.00 0.00 0.00 3.51
2851 3275 1.607467 GCTGTGCCTTTGGTCCCAT 60.607 57.895 0.00 0.00 0.00 4.00
2908 3333 6.865205 ACAGTCTACGTGTATACTTCCAAAAC 59.135 38.462 0.00 0.00 0.00 2.43
2944 3371 1.066215 CGAGGATGGTCACAATGTGGA 60.066 52.381 13.95 0.00 33.87 4.02
2963 3390 6.616947 AGTAATCTTCAGAAGTCAGAACTCG 58.383 40.000 10.09 0.00 33.48 4.18
2983 3410 7.182817 AGTATATCCAACTCAGTGCAAGTAA 57.817 36.000 0.00 0.00 0.00 2.24
2994 3421 7.439655 CCAGCTTAACAGAAGTATATCCAACTC 59.560 40.741 0.00 0.00 0.00 3.01
3062 3489 2.471815 TTATCTCCACTGATCCCGGT 57.528 50.000 0.00 0.00 0.00 5.28
3085 3512 4.981806 TTTGGTGCCAAAGATATGCTAC 57.018 40.909 11.94 0.00 40.51 3.58
3096 3523 2.559440 GAGCAAATGTTTTGGTGCCAA 58.441 42.857 9.18 0.00 37.73 4.52
3099 3526 2.137523 CAGGAGCAAATGTTTTGGTGC 58.862 47.619 13.53 13.53 38.30 5.01
3101 3528 2.365293 GTCCAGGAGCAAATGTTTTGGT 59.635 45.455 4.50 4.50 0.00 3.67
3110 3537 5.178096 TCAGAATTATGTCCAGGAGCAAA 57.822 39.130 0.00 0.00 0.00 3.68
3140 3567 6.058183 GGTTCTTATGATATCCAGCACAAGT 58.942 40.000 0.00 0.00 0.00 3.16
3141 3568 6.057533 TGGTTCTTATGATATCCAGCACAAG 58.942 40.000 0.00 0.00 0.00 3.16
3142 3569 6.000246 TGGTTCTTATGATATCCAGCACAA 58.000 37.500 0.00 0.00 0.00 3.33
3143 3570 5.628797 TGGTTCTTATGATATCCAGCACA 57.371 39.130 0.00 0.00 0.00 4.57
3144 3571 6.291377 TCTTGGTTCTTATGATATCCAGCAC 58.709 40.000 0.00 0.00 0.00 4.40
3145 3572 6.327365 TCTCTTGGTTCTTATGATATCCAGCA 59.673 38.462 0.00 0.00 0.00 4.41
3146 3573 6.648725 GTCTCTTGGTTCTTATGATATCCAGC 59.351 42.308 0.00 0.00 0.00 4.85
3152 3579 9.588096 TGCTATAGTCTCTTGGTTCTTATGATA 57.412 33.333 0.84 0.00 0.00 2.15
3168 3595 2.370349 ACGCTGACACTGCTATAGTCT 58.630 47.619 0.84 0.00 37.60 3.24
3174 3601 0.249868 AAGCAACGCTGACACTGCTA 60.250 50.000 0.00 0.00 44.18 3.49
3175 3602 1.502163 GAAGCAACGCTGACACTGCT 61.502 55.000 0.00 0.00 46.85 4.24
3200 3627 3.813724 GGAATAATAGGGTTTCCGAGCAC 59.186 47.826 0.00 0.00 38.33 4.40
3218 3645 0.108615 CAGAGGACGACTTGCGGAAT 60.109 55.000 0.00 0.00 46.49 3.01
3219 3646 1.289066 CAGAGGACGACTTGCGGAA 59.711 57.895 0.00 0.00 46.49 4.30
3248 3675 0.101579 AAAAAGTGTTTCGGCCCACG 59.898 50.000 0.00 0.00 46.11 4.94
3270 3697 6.644347 TGGCAACATTTGGAGAAAGTAAAAA 58.356 32.000 0.00 0.00 46.17 1.94
3271 3698 6.227298 TGGCAACATTTGGAGAAAGTAAAA 57.773 33.333 0.00 0.00 46.17 1.52
3272 3699 5.860941 TGGCAACATTTGGAGAAAGTAAA 57.139 34.783 0.00 0.00 46.17 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.