Multiple sequence alignment - TraesCS1D01G337600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G337600 chr1D 100.000 2950 0 0 1 2950 427239203 427236254 0.000000e+00 5448.0
1 TraesCS1D01G337600 chr1D 100.000 2042 0 0 3197 5238 427236007 427233966 0.000000e+00 3771.0
2 TraesCS1D01G337600 chr1D 87.952 83 8 2 1848 1929 444148450 444148369 4.320000e-16 97.1
3 TraesCS1D01G337600 chr1D 100.000 33 0 0 594 626 427235103 427235071 1.570000e-05 62.1
4 TraesCS1D01G337600 chr1D 100.000 33 0 0 4101 4133 427238610 427238578 1.570000e-05 62.1
5 TraesCS1D01G337600 chr1B 90.805 1664 118 17 3580 5238 577796736 577795103 0.000000e+00 2193.0
6 TraesCS1D01G337600 chr1B 89.631 1408 94 15 448 1842 577798103 577796735 0.000000e+00 1744.0
7 TraesCS1D01G337600 chr1B 88.000 475 43 6 1 474 577798569 577798108 2.760000e-152 549.0
8 TraesCS1D01G337600 chr1B 88.235 68 3 4 3480 3545 537327310 537327374 5.620000e-10 76.8
9 TraesCS1D01G337600 chr1B 97.297 37 0 1 3546 3581 645320399 645320363 1.570000e-05 62.1
10 TraesCS1D01G337600 chr1A 90.447 1612 131 10 3641 5238 522501108 522499506 0.000000e+00 2102.0
11 TraesCS1D01G337600 chr1A 93.678 1044 52 5 812 1841 522502294 522501251 0.000000e+00 1550.0
12 TraesCS1D01G337600 chr1A 89.094 596 53 5 2358 2950 536206709 536207295 0.000000e+00 730.0
13 TraesCS1D01G337600 chr1A 86.173 405 42 6 1954 2356 536206347 536206739 4.850000e-115 425.0
14 TraesCS1D01G337600 chr1A 84.783 92 12 2 1840 1930 268072564 268072654 2.010000e-14 91.6
15 TraesCS1D01G337600 chr1A 93.182 44 3 0 3580 3623 522501250 522501207 1.220000e-06 65.8
16 TraesCS1D01G337600 chr7B 88.771 472 46 3 2361 2831 106567907 106568372 5.880000e-159 571.0
17 TraesCS1D01G337600 chr7B 89.578 403 40 2 1957 2357 106567533 106567935 1.300000e-140 510.0
18 TraesCS1D01G337600 chr7B 89.683 252 15 3 3296 3545 106572349 106572591 1.420000e-80 311.0
19 TraesCS1D01G337600 chr7B 88.235 68 3 4 3480 3545 97964325 97964261 5.620000e-10 76.8
20 TraesCS1D01G337600 chr3B 87.658 316 22 8 1953 2265 34104975 34104674 8.350000e-93 351.0
21 TraesCS1D01G337600 chr3B 87.658 316 21 9 1953 2265 34155960 34155660 8.350000e-93 351.0
22 TraesCS1D01G337600 chr3B 87.018 285 19 9 1984 2265 34211617 34211348 6.590000e-79 305.0
23 TraesCS1D01G337600 chr3B 86.905 84 10 1 1848 1931 88417558 88417476 5.590000e-15 93.5
24 TraesCS1D01G337600 chr3B 100.000 34 0 0 3548 3581 409876991 409876958 4.380000e-06 63.9
25 TraesCS1D01G337600 chrUn 87.018 285 19 9 1984 2265 278732755 278733024 6.590000e-79 305.0
26 TraesCS1D01G337600 chrUn 86.905 84 10 1 1848 1931 289552623 289552541 5.590000e-15 93.5
27 TraesCS1D01G337600 chrUn 90.698 43 3 1 3549 3590 333725340 333725298 7.330000e-04 56.5
28 TraesCS1D01G337600 chr5B 86.344 227 29 1 1074 1298 603873283 603873057 4.050000e-61 246.0
29 TraesCS1D01G337600 chr5B 87.500 72 3 5 3480 3548 427919204 427919272 1.560000e-10 78.7
30 TraesCS1D01G337600 chr5D 84.821 112 11 5 1848 1953 33660500 33660611 1.990000e-19 108.0
31 TraesCS1D01G337600 chr3D 88.608 79 9 0 1848 1926 30987018 30987096 4.320000e-16 97.1
32 TraesCS1D01G337600 chr3D 87.952 83 9 1 1848 1930 506695795 506695714 4.320000e-16 97.1
33 TraesCS1D01G337600 chr3D 86.567 67 9 0 3480 3546 101672370 101672436 2.020000e-09 75.0
34 TraesCS1D01G337600 chr6A 82.143 112 14 5 1847 1953 87230845 87230955 2.010000e-14 91.6
35 TraesCS1D01G337600 chr4B 82.075 106 12 5 1830 1930 431719874 431719977 3.360000e-12 84.2
36 TraesCS1D01G337600 chr2A 87.143 70 7 2 3480 3548 391355009 391354941 1.560000e-10 78.7
37 TraesCS1D01G337600 chr2B 97.727 44 1 0 1083 1126 51201801 51201758 5.620000e-10 76.8
38 TraesCS1D01G337600 chr2B 90.698 43 3 1 3549 3590 549921114 549921072 7.330000e-04 56.5
39 TraesCS1D01G337600 chr2B 90.698 43 3 1 3549 3590 549938434 549938392 7.330000e-04 56.5
40 TraesCS1D01G337600 chr7A 87.879 66 3 4 3482 3545 646930850 646930912 7.280000e-09 73.1
41 TraesCS1D01G337600 chr7D 86.765 68 4 4 3480 3545 16902576 16902640 2.620000e-08 71.3
42 TraesCS1D01G337600 chr7D 97.222 36 1 0 3548 3583 123159174 123159209 1.570000e-05 62.1
43 TraesCS1D01G337600 chr2D 83.333 78 8 4 3480 3555 631283007 631283081 3.390000e-07 67.6
44 TraesCS1D01G337600 chr6D 97.368 38 0 1 3547 3583 36061854 36061817 4.380000e-06 63.9
45 TraesCS1D01G337600 chr5A 97.297 37 0 1 3546 3581 459719438 459719402 1.570000e-05 62.1
46 TraesCS1D01G337600 chr3A 94.872 39 1 1 3546 3583 457792903 457792941 5.660000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G337600 chr1D 427233966 427239203 5237 True 2335.800000 5448 100.000000 1 5238 4 chr1D.!!$R2 5237
1 TraesCS1D01G337600 chr1B 577795103 577798569 3466 True 1495.333333 2193 89.478667 1 5238 3 chr1B.!!$R2 5237
2 TraesCS1D01G337600 chr1A 522499506 522502294 2788 True 1239.266667 2102 92.435667 812 5238 3 chr1A.!!$R1 4426
3 TraesCS1D01G337600 chr1A 536206347 536207295 948 False 577.500000 730 87.633500 1954 2950 2 chr1A.!!$F2 996
4 TraesCS1D01G337600 chr7B 106567533 106572591 5058 False 464.000000 571 89.344000 1957 3545 3 chr7B.!!$F1 1588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 726 0.033796 CAATGCCACCATCCACCTCT 60.034 55.0 0.00 0.0 0.00 3.69 F
694 729 0.042581 TGCCACCATCCACCTCTCTA 59.957 55.0 0.00 0.0 0.00 2.43 F
1191 1244 0.319900 AGCTGGCCACTATTATCGCG 60.320 55.0 0.00 0.0 0.00 5.87 F
2388 2443 0.387367 CGACGAGGTCACCAGAACAG 60.387 60.0 0.00 0.0 32.39 3.16 F
3270 6782 0.044092 TGGAAGCTACATCCAGGGGA 59.956 55.0 1.25 0.0 41.98 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2379 2434 0.034059 CGGCTGTCTTCTGTTCTGGT 59.966 55.0 0.0 0.0 0.00 4.00 R
2613 2668 0.036164 TTGTAGCATCTGCCGGTGTT 59.964 50.0 1.9 0.0 43.38 3.32 R
2848 6346 0.458716 GTCTCCGGTTGTAGCAGCTC 60.459 60.0 0.0 0.0 0.00 4.09 R
3574 7392 0.249398 AACACATGCGGACTACTCCC 59.751 55.0 0.0 0.0 31.93 4.30 R
4699 8616 0.179100 CGATGAAGGCGAGACCACAT 60.179 55.0 0.0 0.0 43.14 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.119884 TGTGCAAATGCGGTCTTTCATAG 60.120 43.478 0.35 0.00 45.83 2.23
61 62 5.245531 TGCGGTCTTTCATAGTTTCTTCAT 58.754 37.500 0.00 0.00 0.00 2.57
93 94 5.273170 TGAACAAAAGTCGAGATGCAAAAG 58.727 37.500 0.00 0.00 0.00 2.27
106 107 7.010552 TCGAGATGCAAAAGATAAAACTAGAGC 59.989 37.037 0.00 0.00 0.00 4.09
108 109 6.886459 AGATGCAAAAGATAAAACTAGAGCCA 59.114 34.615 0.00 0.00 0.00 4.75
109 110 6.892658 TGCAAAAGATAAAACTAGAGCCAA 57.107 33.333 0.00 0.00 0.00 4.52
110 111 7.466746 TGCAAAAGATAAAACTAGAGCCAAT 57.533 32.000 0.00 0.00 0.00 3.16
111 112 8.574251 TGCAAAAGATAAAACTAGAGCCAATA 57.426 30.769 0.00 0.00 0.00 1.90
123 124 6.951971 ACTAGAGCCAATAATGACTTGACTT 58.048 36.000 0.00 0.00 0.00 3.01
131 132 7.274250 GCCAATAATGACTTGACTTGATTGAAC 59.726 37.037 0.00 0.00 0.00 3.18
152 153 5.774498 ACTGGAGATTTTTGTTGTCCTTC 57.226 39.130 0.00 0.00 0.00 3.46
165 166 4.772624 TGTTGTCCTTCTGTGCTCTAGTAT 59.227 41.667 0.00 0.00 0.00 2.12
169 170 5.823570 TGTCCTTCTGTGCTCTAGTATACTC 59.176 44.000 9.12 0.00 0.00 2.59
218 219 9.117183 TGATGAATGAAGTTAGATCTTGATTGG 57.883 33.333 0.00 0.00 33.03 3.16
228 229 4.774124 AGATCTTGATTGGCGAATGAGAA 58.226 39.130 0.00 0.00 0.00 2.87
229 230 4.574013 AGATCTTGATTGGCGAATGAGAAC 59.426 41.667 0.00 1.74 0.00 3.01
241 242 4.230657 CGAATGAGAACTTGACTCGAAGT 58.769 43.478 0.00 0.00 37.81 3.01
248 249 6.127980 TGAGAACTTGACTCGAAGTATGTAGG 60.128 42.308 0.00 0.00 35.01 3.18
294 295 9.866655 ATTAATGATAAGTAAAGCCAAGGATCA 57.133 29.630 0.00 0.00 0.00 2.92
295 296 9.693739 TTAATGATAAGTAAAGCCAAGGATCAA 57.306 29.630 0.00 0.00 0.00 2.57
296 297 8.593945 AATGATAAGTAAAGCCAAGGATCAAA 57.406 30.769 0.00 0.00 0.00 2.69
297 298 8.593945 ATGATAAGTAAAGCCAAGGATCAAAA 57.406 30.769 0.00 0.00 0.00 2.44
298 299 7.826690 TGATAAGTAAAGCCAAGGATCAAAAC 58.173 34.615 0.00 0.00 0.00 2.43
299 300 7.450014 TGATAAGTAAAGCCAAGGATCAAAACA 59.550 33.333 0.00 0.00 0.00 2.83
310 311 6.437928 CAAGGATCAAAACAGAACAAATCGA 58.562 36.000 0.00 0.00 0.00 3.59
349 350 2.800250 AGAAAAACCTGAGGCCATCTG 58.200 47.619 5.01 3.82 0.00 2.90
357 358 1.317431 TGAGGCCATCTGCATTGCAC 61.317 55.000 7.38 0.00 43.89 4.57
365 366 3.124466 CCATCTGCATTGCACATGTTTTG 59.876 43.478 20.78 6.38 34.08 2.44
373 374 5.331098 CATTGCACATGTTTTGCGATAGTA 58.669 37.500 8.72 0.00 41.37 1.82
387 388 4.100963 TGCGATAGTATCACCACAATCCTT 59.899 41.667 10.71 0.00 39.35 3.36
389 390 5.230942 CGATAGTATCACCACAATCCTTCC 58.769 45.833 10.71 0.00 0.00 3.46
399 400 3.254657 CCACAATCCTTCCGCAAACTTTA 59.745 43.478 0.00 0.00 0.00 1.85
403 404 5.418840 ACAATCCTTCCGCAAACTTTATGAT 59.581 36.000 0.00 0.00 0.00 2.45
404 405 4.963276 TCCTTCCGCAAACTTTATGATG 57.037 40.909 0.00 0.00 0.00 3.07
405 406 4.331968 TCCTTCCGCAAACTTTATGATGT 58.668 39.130 0.00 0.00 0.00 3.06
413 415 6.472163 CCGCAAACTTTATGATGTAATTCACC 59.528 38.462 0.00 0.00 0.00 4.02
415 417 7.319646 GCAAACTTTATGATGTAATTCACCCA 58.680 34.615 0.00 0.00 0.00 4.51
418 420 8.821686 AACTTTATGATGTAATTCACCCATGA 57.178 30.769 0.00 0.00 0.00 3.07
429 431 0.448990 CACCCATGAAGCGACATGTG 59.551 55.000 1.15 13.35 44.00 3.21
433 435 1.676916 CCATGAAGCGACATGTGACCT 60.677 52.381 1.15 0.00 44.00 3.85
458 491 0.605589 AGGACGCAAGACTCCAAGAG 59.394 55.000 0.00 0.00 43.62 2.85
468 501 4.448537 AGACTCCAAGAGAACATCTTCG 57.551 45.455 0.00 0.00 45.50 3.79
474 507 4.081972 TCCAAGAGAACATCTTCGAGAAGG 60.082 45.833 12.32 1.06 45.50 3.46
475 508 4.081972 CCAAGAGAACATCTTCGAGAAGGA 60.082 45.833 12.32 1.20 45.50 3.36
476 509 5.473931 CAAGAGAACATCTTCGAGAAGGAA 58.526 41.667 12.32 0.00 45.50 3.36
490 523 3.617535 AGGAAGTCCCTCGTATGCT 57.382 52.632 0.00 0.00 43.31 3.79
505 538 5.817988 TCGTATGCTGATGTTGACTAGTAC 58.182 41.667 0.00 0.00 0.00 2.73
517 550 7.709269 TGTTGACTAGTACATTCACAAAGTC 57.291 36.000 0.00 0.00 35.70 3.01
519 552 7.438160 TGTTGACTAGTACATTCACAAAGTCAG 59.562 37.037 0.00 0.00 41.11 3.51
522 555 6.456501 ACTAGTACATTCACAAAGTCAGACC 58.543 40.000 0.00 0.00 0.00 3.85
524 557 6.665992 AGTACATTCACAAAGTCAGACCTA 57.334 37.500 0.00 0.00 0.00 3.08
528 561 1.623811 TCACAAAGTCAGACCTAGGGC 59.376 52.381 14.81 11.09 0.00 5.19
529 562 1.625818 CACAAAGTCAGACCTAGGGCT 59.374 52.381 12.97 12.97 0.00 5.19
530 563 2.832129 CACAAAGTCAGACCTAGGGCTA 59.168 50.000 19.53 2.94 0.00 3.93
531 564 3.452627 CACAAAGTCAGACCTAGGGCTAT 59.547 47.826 19.53 3.16 0.00 2.97
533 566 4.080863 ACAAAGTCAGACCTAGGGCTATTG 60.081 45.833 19.53 20.76 0.00 1.90
534 567 2.043227 AGTCAGACCTAGGGCTATTGC 58.957 52.381 19.53 7.81 38.76 3.56
547 582 1.735700 GCTATTGCCCAAAAGCCGAAC 60.736 52.381 0.00 0.00 0.00 3.95
548 583 1.818674 CTATTGCCCAAAAGCCGAACT 59.181 47.619 0.00 0.00 0.00 3.01
562 597 0.443869 CGAACTTGGAGCCAACATCG 59.556 55.000 13.93 13.93 34.77 3.84
563 598 0.804989 GAACTTGGAGCCAACATCGG 59.195 55.000 0.00 0.00 0.00 4.18
564 599 0.400213 AACTTGGAGCCAACATCGGA 59.600 50.000 0.00 0.00 0.00 4.55
565 600 0.321653 ACTTGGAGCCAACATCGGAC 60.322 55.000 0.00 0.00 0.00 4.79
566 601 0.321564 CTTGGAGCCAACATCGGACA 60.322 55.000 0.00 0.00 0.00 4.02
567 602 0.321564 TTGGAGCCAACATCGGACAG 60.322 55.000 0.00 0.00 0.00 3.51
588 623 1.298788 CGGGAAAACAACGTGCACC 60.299 57.895 12.15 0.00 0.00 5.01
598 633 4.079090 CGTGCACCGTCTGATCTC 57.921 61.111 12.15 0.00 0.00 2.75
599 634 1.508545 CGTGCACCGTCTGATCTCT 59.491 57.895 12.15 0.00 0.00 3.10
600 635 0.109086 CGTGCACCGTCTGATCTCTT 60.109 55.000 12.15 0.00 0.00 2.85
602 637 0.532573 TGCACCGTCTGATCTCTTCC 59.467 55.000 0.00 0.00 0.00 3.46
603 638 0.820871 GCACCGTCTGATCTCTTCCT 59.179 55.000 0.00 0.00 0.00 3.36
604 639 1.202359 GCACCGTCTGATCTCTTCCTC 60.202 57.143 0.00 0.00 0.00 3.71
608 643 2.035704 CCGTCTGATCTCTTCCTCATGG 59.964 54.545 0.00 0.00 0.00 3.66
610 645 3.131933 CGTCTGATCTCTTCCTCATGGTT 59.868 47.826 0.00 0.00 34.23 3.67
611 646 4.382470 CGTCTGATCTCTTCCTCATGGTTT 60.382 45.833 0.00 0.00 34.23 3.27
612 647 5.495640 GTCTGATCTCTTCCTCATGGTTTT 58.504 41.667 0.00 0.00 34.23 2.43
613 648 5.584251 GTCTGATCTCTTCCTCATGGTTTTC 59.416 44.000 0.00 0.00 34.23 2.29
614 649 4.507710 TGATCTCTTCCTCATGGTTTTCG 58.492 43.478 0.00 0.00 34.23 3.46
615 650 4.222810 TGATCTCTTCCTCATGGTTTTCGA 59.777 41.667 0.00 0.00 34.23 3.71
616 651 4.193826 TCTCTTCCTCATGGTTTTCGAG 57.806 45.455 0.00 0.00 34.23 4.04
617 652 3.055819 TCTCTTCCTCATGGTTTTCGAGG 60.056 47.826 0.00 0.00 46.49 4.63
618 653 2.027192 TCTTCCTCATGGTTTTCGAGGG 60.027 50.000 4.92 0.00 45.40 4.30
619 654 1.651737 TCCTCATGGTTTTCGAGGGA 58.348 50.000 4.92 0.00 45.40 4.20
620 655 1.555075 TCCTCATGGTTTTCGAGGGAG 59.445 52.381 4.92 0.00 45.40 4.30
621 656 1.407437 CCTCATGGTTTTCGAGGGAGG 60.407 57.143 0.00 0.00 42.27 4.30
622 657 1.279271 CTCATGGTTTTCGAGGGAGGT 59.721 52.381 0.00 0.00 0.00 3.85
623 658 1.003118 TCATGGTTTTCGAGGGAGGTG 59.997 52.381 0.00 0.00 0.00 4.00
668 703 4.223032 AGAGAATGTAACCTCGGTGTCAAT 59.777 41.667 0.00 0.00 34.75 2.57
679 714 1.255882 GGTGTCAATGGTCAATGCCA 58.744 50.000 0.00 0.00 43.48 4.92
680 715 1.067635 GGTGTCAATGGTCAATGCCAC 60.068 52.381 0.00 0.00 41.94 5.01
681 716 1.067635 GTGTCAATGGTCAATGCCACC 60.068 52.381 0.00 0.00 41.94 4.61
685 720 4.762016 TGGTCAATGCCACCATCC 57.238 55.556 0.00 0.00 39.11 3.51
686 721 1.772971 TGGTCAATGCCACCATCCA 59.227 52.632 0.00 0.00 39.11 3.41
687 722 0.611618 TGGTCAATGCCACCATCCAC 60.612 55.000 0.00 0.00 39.11 4.02
688 723 1.322538 GGTCAATGCCACCATCCACC 61.323 60.000 0.00 0.00 33.63 4.61
689 724 0.323725 GTCAATGCCACCATCCACCT 60.324 55.000 0.00 0.00 0.00 4.00
690 725 0.034186 TCAATGCCACCATCCACCTC 60.034 55.000 0.00 0.00 0.00 3.85
691 726 0.033796 CAATGCCACCATCCACCTCT 60.034 55.000 0.00 0.00 0.00 3.69
692 727 0.257039 AATGCCACCATCCACCTCTC 59.743 55.000 0.00 0.00 0.00 3.20
693 728 0.622738 ATGCCACCATCCACCTCTCT 60.623 55.000 0.00 0.00 0.00 3.10
694 729 0.042581 TGCCACCATCCACCTCTCTA 59.957 55.000 0.00 0.00 0.00 2.43
695 730 0.466124 GCCACCATCCACCTCTCTAC 59.534 60.000 0.00 0.00 0.00 2.59
696 731 1.123928 CCACCATCCACCTCTCTACC 58.876 60.000 0.00 0.00 0.00 3.18
697 732 1.622449 CCACCATCCACCTCTCTACCA 60.622 57.143 0.00 0.00 0.00 3.25
709 744 2.697751 CTCTCTACCAGCCTGCTTACAT 59.302 50.000 0.00 0.00 0.00 2.29
747 782 3.077359 CTGGCCAAACGAGAATTCTTCT 58.923 45.455 7.01 0.00 44.21 2.85
749 784 3.502211 TGGCCAAACGAGAATTCTTCTTC 59.498 43.478 9.87 0.00 40.87 2.87
750 785 3.502211 GGCCAAACGAGAATTCTTCTTCA 59.498 43.478 9.87 0.00 40.87 3.02
791 826 1.905512 GCTTCCGGTCCACCTATGT 59.094 57.895 0.00 0.00 0.00 2.29
804 839 6.351881 GGTCCACCTATGTTCAATCTTCAGTA 60.352 42.308 0.00 0.00 0.00 2.74
807 842 8.988060 TCCACCTATGTTCAATCTTCAGTAATA 58.012 33.333 0.00 0.00 0.00 0.98
884 919 7.116376 TCTCGTGATGAATATTAAAATCGGAGC 59.884 37.037 14.03 0.00 0.00 4.70
886 921 7.225734 TCGTGATGAATATTAAAATCGGAGCAA 59.774 33.333 0.00 0.00 0.00 3.91
908 944 4.573900 AGATTCAGTTCATGAGTGGTGAC 58.426 43.478 0.00 0.00 39.68 3.67
911 947 2.037641 TCAGTTCATGAGTGGTGACTGG 59.962 50.000 18.35 5.19 34.69 4.00
937 978 0.529992 ATTTAGCGAGCAGTACCGGC 60.530 55.000 0.00 0.00 0.00 6.13
938 979 2.567564 TTTAGCGAGCAGTACCGGCC 62.568 60.000 0.00 0.00 0.00 6.13
994 1047 2.032071 AACCACCCTGCACGTAGC 59.968 61.111 0.00 0.00 45.96 3.58
1191 1244 0.319900 AGCTGGCCACTATTATCGCG 60.320 55.000 0.00 0.00 0.00 5.87
1267 1320 1.005394 GGCGTCTTCTCCGTCCAAA 60.005 57.895 0.00 0.00 0.00 3.28
1320 1373 3.588336 GTCGTCTACGGGCTCACT 58.412 61.111 2.24 0.00 40.29 3.41
1321 1374 1.136984 GTCGTCTACGGGCTCACTG 59.863 63.158 2.24 0.00 40.29 3.66
1497 1550 2.668632 GGCGAGGACATGTGGGAA 59.331 61.111 1.15 0.00 0.00 3.97
1895 1948 7.946655 TGGATTATATACGAAGCAAAGTGAG 57.053 36.000 0.00 0.00 0.00 3.51
1896 1949 7.497595 TGGATTATATACGAAGCAAAGTGAGT 58.502 34.615 0.00 0.00 0.00 3.41
1897 1950 7.438160 TGGATTATATACGAAGCAAAGTGAGTG 59.562 37.037 0.00 0.00 0.00 3.51
1898 1951 7.652105 GGATTATATACGAAGCAAAGTGAGTGA 59.348 37.037 0.00 0.00 0.00 3.41
1899 1952 8.942338 ATTATATACGAAGCAAAGTGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
1900 1953 8.942338 TTATATACGAAGCAAAGTGAGTGAAT 57.058 30.769 0.00 0.00 0.00 2.57
1901 1954 5.786401 ATACGAAGCAAAGTGAGTGAATC 57.214 39.130 0.00 0.00 0.00 2.52
1902 1955 3.733337 ACGAAGCAAAGTGAGTGAATCT 58.267 40.909 0.00 0.00 0.00 2.40
1903 1956 4.883083 ACGAAGCAAAGTGAGTGAATCTA 58.117 39.130 0.00 0.00 0.00 1.98
1904 1957 4.686554 ACGAAGCAAAGTGAGTGAATCTAC 59.313 41.667 0.00 0.00 0.00 2.59
1905 1958 4.686091 CGAAGCAAAGTGAGTGAATCTACA 59.314 41.667 0.00 0.00 0.00 2.74
1906 1959 5.388890 CGAAGCAAAGTGAGTGAATCTACAC 60.389 44.000 0.00 0.00 40.60 2.90
1928 1981 8.887036 ACACTCTAAAAATATGTCGATATGCA 57.113 30.769 4.73 0.00 0.00 3.96
1929 1982 9.494271 ACACTCTAAAAATATGTCGATATGCAT 57.506 29.630 3.79 3.79 0.00 3.96
1942 1995 9.657419 ATGTCGATATGCATAGATTGTATTGAA 57.343 29.630 12.79 0.00 32.43 2.69
1943 1996 9.487790 TGTCGATATGCATAGATTGTATTGAAA 57.512 29.630 12.79 0.00 32.43 2.69
1992 2045 1.070275 GACCGGTCGAAGTTTGGGT 59.930 57.895 20.85 0.00 0.00 4.51
2047 2100 3.982709 GTGGCTACGATTAGTCCCC 57.017 57.895 0.00 0.00 0.00 4.81
2089 2143 4.144703 GGGGGTCGTCTTCTCCGC 62.145 72.222 0.00 0.00 0.00 5.54
2226 2281 2.439960 AATAGATGCGGCGGGGACA 61.440 57.895 9.78 0.00 0.00 4.02
2227 2282 1.768684 AATAGATGCGGCGGGGACAT 61.769 55.000 9.78 2.72 0.00 3.06
2249 2304 0.393537 CCAAGATGCTGGACCTGGAC 60.394 60.000 0.00 0.00 38.96 4.02
2252 2307 0.689080 AGATGCTGGACCTGGACGAT 60.689 55.000 0.00 0.00 0.00 3.73
2336 2391 0.455633 GTGCTACGACGACGATGGTT 60.456 55.000 15.32 0.00 42.66 3.67
2347 2402 2.444624 CGATGGTTGCGACGAGGTG 61.445 63.158 0.00 0.00 0.00 4.00
2348 2403 2.740714 GATGGTTGCGACGAGGTGC 61.741 63.158 0.00 0.00 0.00 5.01
2349 2404 3.240134 ATGGTTGCGACGAGGTGCT 62.240 57.895 0.00 0.00 0.00 4.40
2350 2405 3.414700 GGTTGCGACGAGGTGCTG 61.415 66.667 0.00 0.00 0.00 4.41
2351 2406 4.077188 GTTGCGACGAGGTGCTGC 62.077 66.667 0.00 0.00 0.00 5.25
2352 2407 4.600576 TTGCGACGAGGTGCTGCA 62.601 61.111 0.00 0.00 0.00 4.41
2354 2409 4.077188 GCGACGAGGTGCTGCAAC 62.077 66.667 10.28 10.28 0.00 4.17
2356 2411 3.414700 GACGAGGTGCTGCAACCG 61.415 66.667 21.32 21.32 45.53 4.44
2377 2432 4.129737 CGATGGTGGCGACGAGGT 62.130 66.667 0.00 0.00 0.00 3.85
2378 2433 2.202756 GATGGTGGCGACGAGGTC 60.203 66.667 0.00 0.00 0.00 3.85
2379 2434 2.994995 ATGGTGGCGACGAGGTCA 60.995 61.111 0.00 0.00 32.09 4.02
2380 2435 3.296709 ATGGTGGCGACGAGGTCAC 62.297 63.158 0.00 6.65 41.72 3.67
2382 2437 3.986006 GTGGCGACGAGGTCACCA 61.986 66.667 0.00 1.56 41.66 4.17
2383 2438 3.680786 TGGCGACGAGGTCACCAG 61.681 66.667 0.00 0.00 39.45 4.00
2384 2439 3.371063 GGCGACGAGGTCACCAGA 61.371 66.667 0.00 0.00 35.13 3.86
2385 2440 2.649034 GCGACGAGGTCACCAGAA 59.351 61.111 0.00 0.00 32.09 3.02
2386 2441 1.733399 GCGACGAGGTCACCAGAAC 60.733 63.158 0.00 0.00 32.09 3.01
2387 2442 1.658114 CGACGAGGTCACCAGAACA 59.342 57.895 0.00 0.00 32.39 3.18
2388 2443 0.387367 CGACGAGGTCACCAGAACAG 60.387 60.000 0.00 0.00 32.39 3.16
2389 2444 0.959553 GACGAGGTCACCAGAACAGA 59.040 55.000 0.00 0.00 32.39 3.41
2390 2445 1.340248 GACGAGGTCACCAGAACAGAA 59.660 52.381 0.00 0.00 32.39 3.02
2391 2446 1.341531 ACGAGGTCACCAGAACAGAAG 59.658 52.381 0.00 0.00 32.39 2.85
2392 2447 1.613925 CGAGGTCACCAGAACAGAAGA 59.386 52.381 0.00 0.00 32.39 2.87
2424 2479 4.180407 CTGGAACCAGTCACAACAAGTGT 61.180 47.826 12.21 0.00 40.92 3.55
2436 2491 3.699038 ACAACAAGTGTTACAACCAGCAT 59.301 39.130 0.00 0.00 37.01 3.79
2454 2509 2.420022 GCATGATGTTTTGCTACGGTCT 59.580 45.455 0.00 0.00 35.95 3.85
2498 2553 0.667184 CAGGCGGCAATGTGGTTTTC 60.667 55.000 13.08 0.00 0.00 2.29
2510 2565 0.748729 TGGTTTTCGCTGGAAACGGT 60.749 50.000 6.43 0.00 41.66 4.83
2613 2668 2.065899 AGGCTTTTGTGCTACAACCA 57.934 45.000 1.85 0.00 37.90 3.67
2617 2672 2.857748 GCTTTTGTGCTACAACCAACAC 59.142 45.455 1.85 0.00 37.90 3.32
2694 2750 2.890474 GACGATGGCGGCGATGTT 60.890 61.111 12.98 0.00 43.17 2.71
2710 2766 0.528017 TGTTCGTTTTGCTGCAACCA 59.472 45.000 15.72 1.61 0.00 3.67
2731 2787 3.503363 CAGCTTTTCAGATGCTACAACCA 59.497 43.478 0.00 0.00 36.69 3.67
2751 2807 2.949177 TACATGGCAGTGTTGGAACT 57.051 45.000 0.00 0.00 33.62 3.01
2786 2842 3.571571 GGTTACGACCTTTTTCAATGGC 58.428 45.455 0.00 0.00 42.99 4.40
2832 6330 3.742385 CAACCAGGCAATCCATTTTTGT 58.258 40.909 0.00 0.00 33.74 2.83
2848 6346 0.538516 TTGTTGGAACCGACCATGGG 60.539 55.000 18.09 0.00 39.82 4.00
2923 6421 0.320946 GTGCTACAACCGGCCAACTA 60.321 55.000 0.00 0.00 0.00 2.24
2937 6435 2.298729 GCCAACTAATTTGCTGGAACCA 59.701 45.455 12.69 0.00 33.34 3.67
3222 6720 4.287781 TTGCCGACGACGAGCCAA 62.288 61.111 9.28 6.40 42.66 4.52
3223 6721 4.717629 TGCCGACGACGAGCCAAG 62.718 66.667 9.28 0.00 42.66 3.61
3238 6748 1.008361 CCAAGTGGCGGCGATTTTTG 61.008 55.000 12.98 9.29 0.00 2.44
3240 6750 1.460273 AAGTGGCGGCGATTTTTGGT 61.460 50.000 12.98 0.00 0.00 3.67
3241 6751 1.732683 GTGGCGGCGATTTTTGGTG 60.733 57.895 12.98 0.00 0.00 4.17
3242 6752 1.899054 TGGCGGCGATTTTTGGTGA 60.899 52.632 12.98 0.00 0.00 4.02
3243 6753 1.247419 TGGCGGCGATTTTTGGTGAT 61.247 50.000 12.98 0.00 0.00 3.06
3244 6754 0.736053 GGCGGCGATTTTTGGTGATA 59.264 50.000 12.98 0.00 0.00 2.15
3257 6769 3.111853 TGGTGATACGATGATGGAAGC 57.888 47.619 0.00 0.00 0.00 3.86
3259 6771 3.895041 TGGTGATACGATGATGGAAGCTA 59.105 43.478 0.00 0.00 0.00 3.32
3264 6776 3.393089 ACGATGATGGAAGCTACATCC 57.607 47.619 21.77 11.47 43.10 3.51
3269 6781 2.620234 TGGAAGCTACATCCAGGGG 58.380 57.895 1.25 0.00 41.98 4.79
3270 6782 0.044092 TGGAAGCTACATCCAGGGGA 59.956 55.000 1.25 0.00 41.98 4.81
3271 6783 0.761802 GGAAGCTACATCCAGGGGAG 59.238 60.000 0.00 0.00 36.92 4.30
3272 6784 0.761802 GAAGCTACATCCAGGGGAGG 59.238 60.000 0.00 0.00 39.63 4.30
3273 6785 1.348775 AAGCTACATCCAGGGGAGGC 61.349 60.000 0.00 0.00 36.94 4.70
3274 6786 1.768077 GCTACATCCAGGGGAGGCT 60.768 63.158 0.00 0.00 36.94 4.58
3275 6787 2.049627 GCTACATCCAGGGGAGGCTG 62.050 65.000 0.00 0.00 36.94 4.85
3276 6788 0.692419 CTACATCCAGGGGAGGCTGT 60.692 60.000 0.00 0.00 40.76 4.40
3277 6789 0.982852 TACATCCAGGGGAGGCTGTG 60.983 60.000 0.00 0.00 38.39 3.66
3278 6790 1.997311 CATCCAGGGGAGGCTGTGA 60.997 63.158 0.00 0.00 34.05 3.58
3279 6791 1.005289 ATCCAGGGGAGGCTGTGAT 59.995 57.895 0.00 0.00 34.05 3.06
3280 6792 1.351080 ATCCAGGGGAGGCTGTGATG 61.351 60.000 0.00 0.00 34.05 3.07
3281 6793 2.593978 CAGGGGAGGCTGTGATGG 59.406 66.667 0.00 0.00 0.00 3.51
3282 6794 2.693864 AGGGGAGGCTGTGATGGG 60.694 66.667 0.00 0.00 0.00 4.00
3283 6795 3.813724 GGGGAGGCTGTGATGGGG 61.814 72.222 0.00 0.00 0.00 4.96
3284 6796 3.813724 GGGAGGCTGTGATGGGGG 61.814 72.222 0.00 0.00 0.00 5.40
3285 6797 4.512914 GGAGGCTGTGATGGGGGC 62.513 72.222 0.00 0.00 0.00 5.80
3286 6798 3.731728 GAGGCTGTGATGGGGGCA 61.732 66.667 0.00 0.00 0.00 5.36
3287 6799 3.025599 AGGCTGTGATGGGGGCAT 61.026 61.111 0.00 0.00 0.00 4.40
3288 6800 1.697394 AGGCTGTGATGGGGGCATA 60.697 57.895 0.00 0.00 0.00 3.14
3289 6801 1.529244 GGCTGTGATGGGGGCATAC 60.529 63.158 0.00 0.00 0.00 2.39
3290 6802 1.227102 GCTGTGATGGGGGCATACA 59.773 57.895 0.00 0.00 0.00 2.29
3291 6803 0.820891 GCTGTGATGGGGGCATACAG 60.821 60.000 0.00 0.00 41.15 2.74
3292 6804 0.820891 CTGTGATGGGGGCATACAGC 60.821 60.000 0.00 0.00 44.65 4.40
3318 7134 4.227134 AGCGGTGGCGGCAGATAG 62.227 66.667 13.91 5.16 46.35 2.08
3465 7283 3.328382 TTTCAGGTACCAGATCCAACG 57.672 47.619 15.94 0.00 0.00 4.10
3474 7292 3.551846 ACCAGATCCAACGAACAAAAGT 58.448 40.909 0.00 0.00 0.00 2.66
3492 7310 1.003118 AGTTGTTGCATCGAAGGGCTA 59.997 47.619 8.28 0.00 0.00 3.93
3546 7364 2.493030 GCGCCTAACAGTCGCCTA 59.507 61.111 0.00 0.00 42.71 3.93
3547 7365 1.067582 GCGCCTAACAGTCGCCTAT 59.932 57.895 0.00 0.00 42.71 2.57
3548 7366 0.940047 GCGCCTAACAGTCGCCTATC 60.940 60.000 0.00 0.00 42.71 2.08
3549 7367 0.669077 CGCCTAACAGTCGCCTATCT 59.331 55.000 0.00 0.00 0.00 1.98
3550 7368 1.878088 CGCCTAACAGTCGCCTATCTA 59.122 52.381 0.00 0.00 0.00 1.98
3551 7369 2.292569 CGCCTAACAGTCGCCTATCTAA 59.707 50.000 0.00 0.00 0.00 2.10
3552 7370 3.243301 CGCCTAACAGTCGCCTATCTAAA 60.243 47.826 0.00 0.00 0.00 1.85
3553 7371 4.690122 GCCTAACAGTCGCCTATCTAAAA 58.310 43.478 0.00 0.00 0.00 1.52
3554 7372 5.114081 GCCTAACAGTCGCCTATCTAAAAA 58.886 41.667 0.00 0.00 0.00 1.94
3555 7373 5.234543 GCCTAACAGTCGCCTATCTAAAAAG 59.765 44.000 0.00 0.00 0.00 2.27
3556 7374 6.570692 CCTAACAGTCGCCTATCTAAAAAGA 58.429 40.000 0.00 0.00 0.00 2.52
3557 7375 6.476053 CCTAACAGTCGCCTATCTAAAAAGAC 59.524 42.308 0.00 0.00 0.00 3.01
3558 7376 5.662674 ACAGTCGCCTATCTAAAAAGACT 57.337 39.130 0.00 0.00 37.90 3.24
3559 7377 6.038997 ACAGTCGCCTATCTAAAAAGACTT 57.961 37.500 0.00 0.00 35.59 3.01
3560 7378 7.166691 ACAGTCGCCTATCTAAAAAGACTTA 57.833 36.000 0.00 0.00 35.59 2.24
3561 7379 7.783042 ACAGTCGCCTATCTAAAAAGACTTAT 58.217 34.615 0.00 0.00 35.59 1.73
3562 7380 8.910944 ACAGTCGCCTATCTAAAAAGACTTATA 58.089 33.333 0.00 0.00 35.59 0.98
3563 7381 9.915629 CAGTCGCCTATCTAAAAAGACTTATAT 57.084 33.333 0.00 0.00 35.59 0.86
3576 7394 8.515695 AAAAGACTTATATTTAAGAACGGGGG 57.484 34.615 9.58 0.00 38.56 5.40
3577 7395 7.441903 AAGACTTATATTTAAGAACGGGGGA 57.558 36.000 9.58 0.00 38.56 4.81
3578 7396 7.063934 AGACTTATATTTAAGAACGGGGGAG 57.936 40.000 9.58 0.00 38.56 4.30
3609 7427 2.889678 TGTGTTCCATACTTGCATTGCA 59.110 40.909 7.38 7.38 36.47 4.08
3725 7624 6.203723 GGCACTAATAGAGGCTTTATTGACTG 59.796 42.308 17.85 11.53 0.00 3.51
3753 7652 7.681939 AACGTCAAATATGGTCATACAAACT 57.318 32.000 0.00 0.00 0.00 2.66
3771 7674 5.717178 ACAAACTCATAGAGCTTAGACCTGA 59.283 40.000 0.00 0.00 32.04 3.86
3782 7685 3.623510 GCTTAGACCTGACCTTTGCATAC 59.376 47.826 0.00 0.00 0.00 2.39
3826 7729 0.896923 TTATTACCGAGGGCACACGT 59.103 50.000 4.79 0.00 0.00 4.49
3874 7780 6.798482 TGAAATATTGAATGCACAAGCCTAG 58.202 36.000 0.00 0.00 41.13 3.02
3875 7781 4.843220 ATATTGAATGCACAAGCCTAGC 57.157 40.909 0.00 0.00 41.13 3.42
3876 7782 2.205022 TTGAATGCACAAGCCTAGCT 57.795 45.000 0.00 0.00 42.56 3.32
3877 7783 3.348647 TTGAATGCACAAGCCTAGCTA 57.651 42.857 0.00 0.00 38.25 3.32
3881 7787 2.787473 TGCACAAGCCTAGCTACATT 57.213 45.000 0.00 0.00 38.25 2.71
3920 7826 7.926674 ATGCCACATCATATCGATATTTTCA 57.073 32.000 15.33 7.28 31.20 2.69
4009 7915 2.021208 GCAATCCCTTCCAGAGAAGCC 61.021 57.143 0.00 0.00 46.97 4.35
4219 8125 5.808366 CTGTGCTAGGAATTAGGTCCATA 57.192 43.478 0.00 0.00 40.48 2.74
4248 8154 7.750947 AGGTCTATCCTTAACTAAACACCAT 57.249 36.000 0.00 0.00 45.67 3.55
4250 8156 9.448587 AGGTCTATCCTTAACTAAACACCATAT 57.551 33.333 0.00 0.00 45.67 1.78
4261 8167 7.031226 ACTAAACACCATATTTGCTATGCAG 57.969 36.000 0.00 0.00 40.61 4.41
4262 8168 5.920193 AAACACCATATTTGCTATGCAGT 57.080 34.783 0.00 0.00 40.61 4.40
4350 8256 4.386951 TGCACCGCATGTACGCCT 62.387 61.111 0.00 0.00 31.71 5.52
4383 8289 7.718753 TCCTTCAAGTTTGTACGGGTTTAATTA 59.281 33.333 0.00 0.00 0.00 1.40
4401 8308 5.914898 AATTAGCTCAAATTAGCCGGTTT 57.085 34.783 1.90 0.00 43.86 3.27
4415 8322 1.335506 CCGGTTTTCATGTTTGGGTCG 60.336 52.381 0.00 0.00 0.00 4.79
4426 8333 1.401905 GTTTGGGTCGGAGATGAATGC 59.598 52.381 0.00 0.00 40.67 3.56
4448 8355 5.528690 TGCACTCATTTATGTATCTTGGAGC 59.471 40.000 0.00 0.00 0.00 4.70
4563 8479 5.576774 GGTATTTATCAGTTTTTGCTGCCAC 59.423 40.000 0.00 0.00 36.49 5.01
4581 8497 2.411418 CCACGAATTGACACACATGACG 60.411 50.000 0.00 0.00 0.00 4.35
4602 8518 6.543465 TGACGAAGGCAATATCATTGAGATTT 59.457 34.615 3.80 0.00 38.19 2.17
4720 8637 0.103208 GTGGTCTCGCCTTCATCGAT 59.897 55.000 0.00 0.00 38.35 3.59
4723 8640 1.067821 GGTCTCGCCTTCATCGATCTT 59.932 52.381 0.00 0.00 35.25 2.40
4727 8644 3.068732 TCTCGCCTTCATCGATCTTTGAT 59.931 43.478 0.00 0.00 35.25 2.57
4732 8649 4.514441 GCCTTCATCGATCTTTGATGTGAT 59.486 41.667 0.00 0.00 42.96 3.06
4790 8707 1.014352 ACAAACAGGCACACGAGAAC 58.986 50.000 0.00 0.00 0.00 3.01
4793 8710 1.299541 AACAGGCACACGAGAACAAG 58.700 50.000 0.00 0.00 0.00 3.16
4866 8783 3.191371 GGTCGTTTCAATTGCTTCTCCAT 59.809 43.478 0.00 0.00 0.00 3.41
4901 8818 7.913674 AAGATCTCTTGGTAACTTCAATGAC 57.086 36.000 0.00 0.00 34.38 3.06
4908 8825 2.415512 GGTAACTTCAATGACTGCGGTC 59.584 50.000 19.20 19.20 42.42 4.79
4923 8840 1.732941 CGGTCGATGAATGGAACCAA 58.267 50.000 0.00 0.00 0.00 3.67
4981 8898 7.351981 TCGATTTCTTTTGTACATTGTCACTG 58.648 34.615 0.00 0.00 0.00 3.66
4982 8899 6.086765 CGATTTCTTTTGTACATTGTCACTGC 59.913 38.462 0.00 0.00 0.00 4.40
4994 8913 5.106712 ACATTGTCACTGCAATAAGGTTACG 60.107 40.000 0.00 0.00 37.00 3.18
5081 9002 8.633075 TCAAGTTGAGTTTTCATTTTCATCAC 57.367 30.769 0.08 0.00 32.27 3.06
5085 9006 5.531634 TGAGTTTTCATTTTCATCACTGGC 58.468 37.500 0.00 0.00 0.00 4.85
5088 9009 3.940209 TTCATTTTCATCACTGGCCAC 57.060 42.857 0.00 0.00 0.00 5.01
5110 9031 7.008086 GCCACGACTATGTAATAACGACATATC 59.992 40.741 0.00 0.00 38.70 1.63
5122 9043 2.035961 ACGACATATCCCGACAGAATGG 59.964 50.000 0.00 0.00 43.62 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.803020 ATGAAGAAACTATGAAAGACCGC 57.197 39.130 0.00 0.00 0.00 5.68
40 41 7.133891 ACAATGAAGAAACTATGAAAGACCG 57.866 36.000 0.00 0.00 0.00 4.79
52 53 7.985634 TTGTTCAAGCTTACAATGAAGAAAC 57.014 32.000 10.14 0.00 34.60 2.78
61 62 5.583061 TCTCGACTTTTGTTCAAGCTTACAA 59.417 36.000 10.14 10.14 32.76 2.41
106 107 8.517878 AGTTCAATCAAGTCAAGTCATTATTGG 58.482 33.333 0.00 0.00 0.00 3.16
108 109 8.517878 CCAGTTCAATCAAGTCAAGTCATTATT 58.482 33.333 0.00 0.00 0.00 1.40
109 110 7.884877 TCCAGTTCAATCAAGTCAAGTCATTAT 59.115 33.333 0.00 0.00 0.00 1.28
110 111 7.223584 TCCAGTTCAATCAAGTCAAGTCATTA 58.776 34.615 0.00 0.00 0.00 1.90
111 112 6.064060 TCCAGTTCAATCAAGTCAAGTCATT 58.936 36.000 0.00 0.00 0.00 2.57
123 124 7.111247 ACAACAAAAATCTCCAGTTCAATCA 57.889 32.000 0.00 0.00 0.00 2.57
131 132 5.300286 ACAGAAGGACAACAAAAATCTCCAG 59.700 40.000 0.00 0.00 0.00 3.86
196 197 6.258727 TCGCCAATCAAGATCTAACTTCATTC 59.741 38.462 0.00 0.00 0.00 2.67
218 219 2.596452 TCGAGTCAAGTTCTCATTCGC 58.404 47.619 0.00 0.00 32.79 4.70
228 229 5.475909 TGTTCCTACATACTTCGAGTCAAGT 59.524 40.000 11.17 11.17 39.94 3.16
229 230 5.950883 TGTTCCTACATACTTCGAGTCAAG 58.049 41.667 0.00 0.00 0.00 3.02
338 339 1.000646 TGCAATGCAGATGGCCTCA 60.001 52.632 2.72 0.00 43.89 3.86
341 342 1.820581 ATGTGCAATGCAGATGGCC 59.179 52.632 17.28 0.00 40.98 5.36
349 350 1.138337 TCGCAAAACATGTGCAATGC 58.862 45.000 0.00 7.21 42.33 3.56
357 358 5.064579 TGTGGTGATACTATCGCAAAACATG 59.935 40.000 10.99 0.00 41.46 3.21
365 366 4.258702 AGGATTGTGGTGATACTATCGC 57.741 45.455 1.46 1.46 34.86 4.58
373 374 0.327924 TGCGGAAGGATTGTGGTGAT 59.672 50.000 0.00 0.00 0.00 3.06
387 388 7.247728 GTGAATTACATCATAAAGTTTGCGGA 58.752 34.615 0.00 0.00 0.00 5.54
389 390 6.472163 GGGTGAATTACATCATAAAGTTTGCG 59.528 38.462 0.00 0.00 0.00 4.85
399 400 4.276678 CGCTTCATGGGTGAATTACATCAT 59.723 41.667 0.00 0.00 43.08 2.45
403 404 3.006940 GTCGCTTCATGGGTGAATTACA 58.993 45.455 0.00 0.00 43.08 2.41
404 405 3.006940 TGTCGCTTCATGGGTGAATTAC 58.993 45.455 0.00 0.00 43.08 1.89
405 406 3.342377 TGTCGCTTCATGGGTGAATTA 57.658 42.857 0.00 0.00 43.08 1.40
413 415 0.729116 GGTCACATGTCGCTTCATGG 59.271 55.000 17.70 9.80 46.39 3.66
415 417 3.262420 GTTAGGTCACATGTCGCTTCAT 58.738 45.455 0.00 0.00 0.00 2.57
418 420 2.831685 TGTTAGGTCACATGTCGCTT 57.168 45.000 0.00 0.00 0.00 4.68
422 424 3.432252 CGTCCTTTGTTAGGTCACATGTC 59.568 47.826 0.00 0.00 45.03 3.06
429 431 2.479275 GTCTTGCGTCCTTTGTTAGGTC 59.521 50.000 0.00 0.00 45.03 3.85
433 435 2.103432 TGGAGTCTTGCGTCCTTTGTTA 59.897 45.455 0.00 0.00 33.57 2.41
441 443 2.062519 GTTCTCTTGGAGTCTTGCGTC 58.937 52.381 0.00 0.00 0.00 5.19
458 491 4.177783 GGACTTCCTTCTCGAAGATGTTC 58.822 47.826 8.19 0.00 41.57 3.18
474 507 2.101582 ACATCAGCATACGAGGGACTTC 59.898 50.000 0.00 0.00 41.55 3.01
475 508 2.111384 ACATCAGCATACGAGGGACTT 58.889 47.619 0.00 0.00 41.55 3.01
483 516 5.578776 TGTACTAGTCAACATCAGCATACG 58.421 41.667 0.00 0.00 0.00 3.06
490 523 7.931407 ACTTTGTGAATGTACTAGTCAACATCA 59.069 33.333 10.92 8.50 34.82 3.07
505 538 4.256920 CCCTAGGTCTGACTTTGTGAATG 58.743 47.826 8.29 0.00 0.00 2.67
528 561 1.818674 AGTTCGGCTTTTGGGCAATAG 59.181 47.619 0.00 0.00 40.90 1.73
529 562 1.917872 AGTTCGGCTTTTGGGCAATA 58.082 45.000 0.00 0.00 40.90 1.90
530 563 1.047801 AAGTTCGGCTTTTGGGCAAT 58.952 45.000 0.00 0.00 40.90 3.56
531 564 0.103937 CAAGTTCGGCTTTTGGGCAA 59.896 50.000 0.00 0.00 40.90 4.52
533 566 1.006220 CCAAGTTCGGCTTTTGGGC 60.006 57.895 0.00 0.00 38.12 5.36
534 567 0.598065 CTCCAAGTTCGGCTTTTGGG 59.402 55.000 2.96 0.00 41.31 4.12
537 570 0.467290 TGGCTCCAAGTTCGGCTTTT 60.467 50.000 0.00 0.00 34.69 2.27
541 576 1.244019 ATGTTGGCTCCAAGTTCGGC 61.244 55.000 0.83 0.00 36.52 5.54
547 582 0.321564 TGTCCGATGTTGGCTCCAAG 60.322 55.000 0.83 0.00 36.52 3.61
548 583 0.321564 CTGTCCGATGTTGGCTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
562 597 0.949397 GTTGTTTTCCCGTCCTGTCC 59.051 55.000 0.00 0.00 0.00 4.02
563 598 0.584876 CGTTGTTTTCCCGTCCTGTC 59.415 55.000 0.00 0.00 0.00 3.51
564 599 0.107557 ACGTTGTTTTCCCGTCCTGT 60.108 50.000 0.00 0.00 0.00 4.00
565 600 0.306533 CACGTTGTTTTCCCGTCCTG 59.693 55.000 0.00 0.00 31.46 3.86
566 601 1.441732 GCACGTTGTTTTCCCGTCCT 61.442 55.000 0.00 0.00 31.46 3.85
567 602 1.009335 GCACGTTGTTTTCCCGTCC 60.009 57.895 0.00 0.00 31.46 4.79
588 623 2.692557 ACCATGAGGAAGAGATCAGACG 59.307 50.000 0.00 0.00 38.69 4.18
591 626 4.569966 CGAAAACCATGAGGAAGAGATCAG 59.430 45.833 0.00 0.00 38.69 2.90
602 637 1.279271 ACCTCCCTCGAAAACCATGAG 59.721 52.381 0.00 0.00 0.00 2.90
603 638 1.003118 CACCTCCCTCGAAAACCATGA 59.997 52.381 0.00 0.00 0.00 3.07
604 639 1.003118 TCACCTCCCTCGAAAACCATG 59.997 52.381 0.00 0.00 0.00 3.66
608 643 5.163652 CCATAATTTCACCTCCCTCGAAAAC 60.164 44.000 0.00 0.00 32.76 2.43
610 645 4.226394 TCCATAATTTCACCTCCCTCGAAA 59.774 41.667 0.00 0.00 33.48 3.46
611 646 3.778075 TCCATAATTTCACCTCCCTCGAA 59.222 43.478 0.00 0.00 0.00 3.71
612 647 3.380393 TCCATAATTTCACCTCCCTCGA 58.620 45.455 0.00 0.00 0.00 4.04
613 648 3.838244 TCCATAATTTCACCTCCCTCG 57.162 47.619 0.00 0.00 0.00 4.63
614 649 6.607198 TGAAAATCCATAATTTCACCTCCCTC 59.393 38.462 0.00 0.00 39.81 4.30
615 650 6.502138 TGAAAATCCATAATTTCACCTCCCT 58.498 36.000 0.00 0.00 39.81 4.20
616 651 6.790232 TGAAAATCCATAATTTCACCTCCC 57.210 37.500 0.00 0.00 39.81 4.30
622 657 5.265191 TCCGGGTGAAAATCCATAATTTCA 58.735 37.500 0.00 0.00 41.78 2.69
623 658 5.592688 TCTCCGGGTGAAAATCCATAATTTC 59.407 40.000 0.00 0.00 36.54 2.17
679 714 1.967274 GCTGGTAGAGAGGTGGATGGT 60.967 57.143 0.00 0.00 0.00 3.55
680 715 0.755686 GCTGGTAGAGAGGTGGATGG 59.244 60.000 0.00 0.00 0.00 3.51
681 716 0.755686 GGCTGGTAGAGAGGTGGATG 59.244 60.000 0.00 0.00 0.00 3.51
682 717 0.639392 AGGCTGGTAGAGAGGTGGAT 59.361 55.000 0.00 0.00 0.00 3.41
683 718 0.324738 CAGGCTGGTAGAGAGGTGGA 60.325 60.000 6.61 0.00 0.00 4.02
684 719 1.965754 GCAGGCTGGTAGAGAGGTGG 61.966 65.000 17.64 0.00 0.00 4.61
685 720 0.975040 AGCAGGCTGGTAGAGAGGTG 60.975 60.000 19.12 0.00 0.00 4.00
686 721 0.252467 AAGCAGGCTGGTAGAGAGGT 60.252 55.000 20.91 0.00 0.00 3.85
687 722 1.410882 GTAAGCAGGCTGGTAGAGAGG 59.589 57.143 20.91 0.00 0.00 3.69
688 723 2.103373 TGTAAGCAGGCTGGTAGAGAG 58.897 52.381 20.91 0.00 0.00 3.20
689 724 2.231716 TGTAAGCAGGCTGGTAGAGA 57.768 50.000 20.91 6.95 0.00 3.10
690 725 2.484417 CCATGTAAGCAGGCTGGTAGAG 60.484 54.545 20.91 8.39 0.00 2.43
691 726 1.486310 CCATGTAAGCAGGCTGGTAGA 59.514 52.381 20.91 8.41 0.00 2.59
692 727 1.486310 TCCATGTAAGCAGGCTGGTAG 59.514 52.381 20.91 7.71 0.00 3.18
693 728 1.486310 CTCCATGTAAGCAGGCTGGTA 59.514 52.381 20.91 4.68 0.00 3.25
694 729 0.254178 CTCCATGTAAGCAGGCTGGT 59.746 55.000 14.51 14.51 0.00 4.00
695 730 0.254178 ACTCCATGTAAGCAGGCTGG 59.746 55.000 17.64 0.00 0.00 4.85
696 731 1.065926 TCACTCCATGTAAGCAGGCTG 60.066 52.381 10.94 10.94 0.00 4.85
697 732 1.279496 TCACTCCATGTAAGCAGGCT 58.721 50.000 0.00 0.00 0.00 4.58
709 744 3.055094 GGCCAGATAGTTCTTTCACTCCA 60.055 47.826 0.00 0.00 0.00 3.86
804 839 6.172350 TCTAGCCCTCCCTCATAGAATATT 57.828 41.667 0.00 0.00 0.00 1.28
807 842 4.708420 ATCTAGCCCTCCCTCATAGAAT 57.292 45.455 0.00 0.00 0.00 2.40
810 845 3.194542 CGAAATCTAGCCCTCCCTCATAG 59.805 52.174 0.00 0.00 0.00 2.23
884 919 4.999311 TCACCACTCATGAACTGAATCTTG 59.001 41.667 0.00 0.00 32.14 3.02
886 921 4.285517 AGTCACCACTCATGAACTGAATCT 59.714 41.667 0.00 0.00 32.14 2.40
908 944 2.131183 GCTCGCTAAATAGTCTGCCAG 58.869 52.381 0.00 0.00 0.00 4.85
911 947 2.815478 ACTGCTCGCTAAATAGTCTGC 58.185 47.619 0.00 0.00 0.00 4.26
937 978 3.488721 CGTACTTGTTGGTAGATCTCCGG 60.489 52.174 0.00 0.00 0.00 5.14
938 979 3.376234 TCGTACTTGTTGGTAGATCTCCG 59.624 47.826 0.00 0.00 0.00 4.63
939 980 4.978083 TCGTACTTGTTGGTAGATCTCC 57.022 45.455 0.00 1.01 0.00 3.71
940 981 6.192234 TCTTCGTACTTGTTGGTAGATCTC 57.808 41.667 0.00 0.00 0.00 2.75
942 983 5.285607 CGTTCTTCGTACTTGTTGGTAGATC 59.714 44.000 0.00 0.00 34.52 2.75
944 985 4.275689 TCGTTCTTCGTACTTGTTGGTAGA 59.724 41.667 0.00 0.00 40.80 2.59
966 1007 2.427506 CAGGGTGGTTGTTCTTAGCTC 58.572 52.381 0.00 0.00 0.00 4.09
994 1047 2.821366 GGTGAGCGCCATGGAGTG 60.821 66.667 18.40 5.20 0.00 3.51
1017 1070 1.275010 TCGGTGCTGATGAGCTTGTAA 59.725 47.619 5.57 0.00 46.39 2.41
1038 1091 2.046023 TGGCCTTGGAGCATGTCG 60.046 61.111 3.32 0.00 0.00 4.35
1182 1235 0.251653 AGGGAGGGAGCGCGATAATA 60.252 55.000 12.10 0.00 0.00 0.98
1191 1244 4.814041 AGCCTGGAGGGAGGGAGC 62.814 72.222 0.00 0.00 37.23 4.70
1224 1277 2.810887 GTGAGCACGCGCATGAGA 60.811 61.111 8.08 0.00 42.27 3.27
1267 1320 4.681978 GTCGTCCGGCTGCTGGTT 62.682 66.667 25.92 0.00 0.00 3.67
1599 1652 2.116772 ACCCCGGAGAAGACGTCA 59.883 61.111 19.50 0.00 0.00 4.35
1677 1730 3.103911 CACTCGACGTGCGGGAAC 61.104 66.667 13.04 0.00 45.56 3.62
1869 1922 9.639601 CTCACTTTGCTTCGTATATAATCCATA 57.360 33.333 0.00 0.00 0.00 2.74
1870 1923 8.150945 ACTCACTTTGCTTCGTATATAATCCAT 58.849 33.333 0.00 0.00 0.00 3.41
1871 1924 7.438160 CACTCACTTTGCTTCGTATATAATCCA 59.562 37.037 0.00 0.00 0.00 3.41
1872 1925 7.652105 TCACTCACTTTGCTTCGTATATAATCC 59.348 37.037 0.00 0.00 0.00 3.01
1873 1926 8.575565 TCACTCACTTTGCTTCGTATATAATC 57.424 34.615 0.00 0.00 0.00 1.75
1874 1927 8.942338 TTCACTCACTTTGCTTCGTATATAAT 57.058 30.769 0.00 0.00 0.00 1.28
1875 1928 8.942338 ATTCACTCACTTTGCTTCGTATATAA 57.058 30.769 0.00 0.00 0.00 0.98
1876 1929 8.414003 AGATTCACTCACTTTGCTTCGTATATA 58.586 33.333 0.00 0.00 0.00 0.86
1877 1930 7.268586 AGATTCACTCACTTTGCTTCGTATAT 58.731 34.615 0.00 0.00 0.00 0.86
1878 1931 6.631016 AGATTCACTCACTTTGCTTCGTATA 58.369 36.000 0.00 0.00 0.00 1.47
1879 1932 5.482908 AGATTCACTCACTTTGCTTCGTAT 58.517 37.500 0.00 0.00 0.00 3.06
1880 1933 4.883083 AGATTCACTCACTTTGCTTCGTA 58.117 39.130 0.00 0.00 0.00 3.43
1881 1934 3.733337 AGATTCACTCACTTTGCTTCGT 58.267 40.909 0.00 0.00 0.00 3.85
1882 1935 4.686091 TGTAGATTCACTCACTTTGCTTCG 59.314 41.667 0.00 0.00 0.00 3.79
1883 1936 5.698545 AGTGTAGATTCACTCACTTTGCTTC 59.301 40.000 0.00 0.00 44.07 3.86
1884 1937 5.615289 AGTGTAGATTCACTCACTTTGCTT 58.385 37.500 0.00 0.00 44.07 3.91
1885 1938 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
1902 1955 9.974980 TGCATATCGACATATTTTTAGAGTGTA 57.025 29.630 0.00 0.00 0.00 2.90
1903 1956 8.887036 TGCATATCGACATATTTTTAGAGTGT 57.113 30.769 0.00 0.00 0.00 3.55
1916 1969 9.657419 TTCAATACAATCTATGCATATCGACAT 57.343 29.630 6.92 0.00 0.00 3.06
1917 1970 9.487790 TTTCAATACAATCTATGCATATCGACA 57.512 29.630 6.92 0.00 0.00 4.35
1939 1992 9.902196 GGAAACGTTTTCCTTTTAGATATTTCA 57.098 29.630 15.89 0.00 35.73 2.69
1940 1993 9.902196 TGGAAACGTTTTCCTTTTAGATATTTC 57.098 29.630 16.65 0.00 39.31 2.17
1941 1994 9.687210 GTGGAAACGTTTTCCTTTTAGATATTT 57.313 29.630 16.65 0.00 39.31 1.40
1942 1995 8.301720 GGTGGAAACGTTTTCCTTTTAGATATT 58.698 33.333 16.65 0.00 39.31 1.28
1943 1996 7.094075 GGGTGGAAACGTTTTCCTTTTAGATAT 60.094 37.037 16.65 0.00 39.31 1.63
1944 1997 6.207221 GGGTGGAAACGTTTTCCTTTTAGATA 59.793 38.462 16.65 0.00 39.31 1.98
1945 1998 5.010314 GGGTGGAAACGTTTTCCTTTTAGAT 59.990 40.000 16.65 0.00 39.31 1.98
1946 1999 4.338964 GGGTGGAAACGTTTTCCTTTTAGA 59.661 41.667 16.65 0.00 39.31 2.10
1947 2000 4.613944 GGGTGGAAACGTTTTCCTTTTAG 58.386 43.478 16.65 0.00 39.31 1.85
1948 2001 3.066481 CGGGTGGAAACGTTTTCCTTTTA 59.934 43.478 16.65 0.00 39.31 1.52
1949 2002 2.159212 CGGGTGGAAACGTTTTCCTTTT 60.159 45.455 16.65 0.00 39.31 2.27
1950 2003 1.406180 CGGGTGGAAACGTTTTCCTTT 59.594 47.619 16.65 0.00 39.31 3.11
1951 2004 1.026584 CGGGTGGAAACGTTTTCCTT 58.973 50.000 16.65 0.00 39.31 3.36
1952 2005 0.820482 CCGGGTGGAAACGTTTTCCT 60.820 55.000 16.65 0.00 39.31 3.36
1980 2033 0.249573 GTGACCGACCCAAACTTCGA 60.250 55.000 0.00 0.00 37.43 3.71
2016 2069 0.391130 TAGCCACGAATCGCTTTGCT 60.391 50.000 1.15 8.21 36.53 3.91
2046 2099 0.600255 GGATAATGTCGACTGGGCGG 60.600 60.000 17.92 0.00 0.00 6.13
2047 2100 0.389391 AGGATAATGTCGACTGGGCG 59.611 55.000 17.92 0.00 0.00 6.13
2226 2281 1.153086 GGTCCAGCATCTTGGCGAT 60.153 57.895 0.00 0.00 38.16 4.58
2227 2282 2.268920 GGTCCAGCATCTTGGCGA 59.731 61.111 0.00 0.00 38.16 5.54
2232 2287 0.904865 TCGTCCAGGTCCAGCATCTT 60.905 55.000 0.00 0.00 0.00 2.40
2270 2325 1.338674 CCCGTGGTTGAAGCATCTACA 60.339 52.381 0.00 0.00 33.62 2.74
2296 2351 2.032030 CCGTTTCTCATCGTTGCAACTT 60.032 45.455 26.09 11.65 0.00 2.66
2299 2354 1.262950 CACCGTTTCTCATCGTTGCAA 59.737 47.619 0.00 0.00 0.00 4.08
2336 2391 4.600576 TTGCAGCACCTCGTCGCA 62.601 61.111 0.00 0.00 0.00 5.10
2360 2415 4.129737 ACCTCGTCGCCACCATCG 62.130 66.667 0.00 0.00 0.00 3.84
2361 2416 2.202756 GACCTCGTCGCCACCATC 60.203 66.667 0.00 0.00 0.00 3.51
2362 2417 2.994995 TGACCTCGTCGCCACCAT 60.995 61.111 0.00 0.00 34.95 3.55
2363 2418 3.986006 GTGACCTCGTCGCCACCA 61.986 66.667 0.00 0.00 37.12 4.17
2368 2423 1.733399 GTTCTGGTGACCTCGTCGC 60.733 63.158 2.11 0.00 41.69 5.19
2369 2424 0.387367 CTGTTCTGGTGACCTCGTCG 60.387 60.000 2.11 0.00 34.95 5.12
2370 2425 0.959553 TCTGTTCTGGTGACCTCGTC 59.040 55.000 2.11 0.00 0.00 4.20
2371 2426 1.341531 CTTCTGTTCTGGTGACCTCGT 59.658 52.381 2.11 0.00 0.00 4.18
2372 2427 1.613925 TCTTCTGTTCTGGTGACCTCG 59.386 52.381 2.11 0.00 0.00 4.63
2373 2428 2.365617 TGTCTTCTGTTCTGGTGACCTC 59.634 50.000 2.11 0.00 0.00 3.85
2374 2429 2.366916 CTGTCTTCTGTTCTGGTGACCT 59.633 50.000 2.11 0.00 0.00 3.85
2375 2430 2.760374 CTGTCTTCTGTTCTGGTGACC 58.240 52.381 0.00 0.00 0.00 4.02
2376 2431 2.139118 GCTGTCTTCTGTTCTGGTGAC 58.861 52.381 0.00 0.00 0.00 3.67
2377 2432 1.070758 GGCTGTCTTCTGTTCTGGTGA 59.929 52.381 0.00 0.00 0.00 4.02
2378 2433 1.517242 GGCTGTCTTCTGTTCTGGTG 58.483 55.000 0.00 0.00 0.00 4.17
2379 2434 0.034059 CGGCTGTCTTCTGTTCTGGT 59.966 55.000 0.00 0.00 0.00 4.00
2380 2435 0.318441 TCGGCTGTCTTCTGTTCTGG 59.682 55.000 0.00 0.00 0.00 3.86
2381 2436 1.998315 CATCGGCTGTCTTCTGTTCTG 59.002 52.381 0.00 0.00 0.00 3.02
2382 2437 1.674221 GCATCGGCTGTCTTCTGTTCT 60.674 52.381 0.00 0.00 36.96 3.01
2383 2438 0.723981 GCATCGGCTGTCTTCTGTTC 59.276 55.000 0.00 0.00 36.96 3.18
2384 2439 2.846371 GCATCGGCTGTCTTCTGTT 58.154 52.632 0.00 0.00 36.96 3.16
2385 2440 4.606071 GCATCGGCTGTCTTCTGT 57.394 55.556 0.00 0.00 36.96 3.41
2424 2479 4.305769 GCAAAACATCATGCTGGTTGTAA 58.694 39.130 0.00 0.00 39.46 2.41
2436 2491 3.064207 GTCAGACCGTAGCAAAACATCA 58.936 45.455 0.00 0.00 0.00 3.07
2451 2506 0.674895 GGGGTCATGCTGTGTCAGAC 60.675 60.000 0.66 0.00 32.44 3.51
2454 2509 2.347114 CGGGGTCATGCTGTGTCA 59.653 61.111 0.00 0.00 0.00 3.58
2480 2535 1.665442 GAAAACCACATTGCCGCCT 59.335 52.632 0.00 0.00 0.00 5.52
2487 2542 2.542824 CGTTTCCAGCGAAAACCACATT 60.543 45.455 0.00 0.00 39.66 2.71
2510 2565 2.422597 CGGTTGAAGCATCTGGTGTAA 58.577 47.619 0.00 0.00 0.00 2.41
2546 2601 2.348104 CGGGAGATGTGACCGGTCA 61.348 63.158 33.23 33.23 43.69 4.02
2613 2668 0.036164 TTGTAGCATCTGCCGGTGTT 59.964 50.000 1.90 0.00 43.38 3.32
2617 2672 2.173669 CGGTTGTAGCATCTGCCGG 61.174 63.158 0.00 0.00 43.38 6.13
2677 2733 2.871427 GAACATCGCCGCCATCGTC 61.871 63.158 0.00 0.00 0.00 4.20
2686 2742 1.337110 GCAGCAAAACGAACATCGCC 61.337 55.000 0.00 0.00 45.12 5.54
2687 2743 0.660005 TGCAGCAAAACGAACATCGC 60.660 50.000 0.00 0.00 45.12 4.58
2694 2750 1.065600 GCTGGTTGCAGCAAAACGA 59.934 52.632 10.11 0.00 46.73 3.85
2710 2766 3.754965 TGGTTGTAGCATCTGAAAAGCT 58.245 40.909 7.58 7.58 42.14 3.74
2731 2787 3.084039 CAGTTCCAACACTGCCATGTAT 58.916 45.455 0.00 0.00 37.96 2.29
2744 2800 2.292016 CCACGCAAATACACAGTTCCAA 59.708 45.455 0.00 0.00 0.00 3.53
2751 2807 1.799403 CGTAACCCACGCAAATACACA 59.201 47.619 0.00 0.00 45.03 3.72
2802 2859 2.034066 GCCTGGTTGCAGCACCTA 59.966 61.111 8.97 0.00 37.75 3.08
2832 6330 1.682849 CTCCCATGGTCGGTTCCAA 59.317 57.895 11.73 0.00 41.09 3.53
2848 6346 0.458716 GTCTCCGGTTGTAGCAGCTC 60.459 60.000 0.00 0.00 0.00 4.09
2891 6389 4.957327 GGTTGTAGCACCCCCAATAAATTA 59.043 41.667 0.00 0.00 0.00 1.40
2898 6396 2.432563 CGGTTGTAGCACCCCCAA 59.567 61.111 0.00 0.00 32.48 4.12
3207 6705 4.719369 ACTTGGCTCGTCGTCGGC 62.719 66.667 1.55 4.73 37.69 5.54
3220 6718 1.008361 CCAAAAATCGCCGCCACTTG 61.008 55.000 0.00 0.00 0.00 3.16
3221 6719 1.288752 CCAAAAATCGCCGCCACTT 59.711 52.632 0.00 0.00 0.00 3.16
3222 6720 1.901464 ACCAAAAATCGCCGCCACT 60.901 52.632 0.00 0.00 0.00 4.00
3223 6721 1.732683 CACCAAAAATCGCCGCCAC 60.733 57.895 0.00 0.00 0.00 5.01
3231 6741 6.618287 TCCATCATCGTATCACCAAAAATC 57.382 37.500 0.00 0.00 0.00 2.17
3238 6748 3.393089 AGCTTCCATCATCGTATCACC 57.607 47.619 0.00 0.00 0.00 4.02
3240 6750 5.336770 GGATGTAGCTTCCATCATCGTATCA 60.337 44.000 21.02 0.00 40.38 2.15
3241 6751 5.105752 GGATGTAGCTTCCATCATCGTATC 58.894 45.833 21.02 2.04 40.38 2.24
3242 6752 4.528206 TGGATGTAGCTTCCATCATCGTAT 59.472 41.667 21.02 0.00 40.38 3.06
3243 6753 3.895041 TGGATGTAGCTTCCATCATCGTA 59.105 43.478 21.02 7.30 40.38 3.43
3244 6754 2.700371 TGGATGTAGCTTCCATCATCGT 59.300 45.455 21.02 0.00 40.38 3.73
3257 6769 2.140405 CAGCCTCCCCTGGATGTAG 58.860 63.158 0.00 0.00 38.57 2.74
3264 6776 2.593978 CCATCACAGCCTCCCCTG 59.406 66.667 0.00 0.00 38.78 4.45
3265 6777 2.693864 CCCATCACAGCCTCCCCT 60.694 66.667 0.00 0.00 0.00 4.79
3266 6778 3.813724 CCCCATCACAGCCTCCCC 61.814 72.222 0.00 0.00 0.00 4.81
3267 6779 3.813724 CCCCCATCACAGCCTCCC 61.814 72.222 0.00 0.00 0.00 4.30
3268 6780 4.512914 GCCCCCATCACAGCCTCC 62.513 72.222 0.00 0.00 0.00 4.30
3269 6781 1.708993 TATGCCCCCATCACAGCCTC 61.709 60.000 0.00 0.00 32.85 4.70
3270 6782 1.697394 TATGCCCCCATCACAGCCT 60.697 57.895 0.00 0.00 32.85 4.58
3271 6783 1.529244 GTATGCCCCCATCACAGCC 60.529 63.158 0.00 0.00 32.85 4.85
3272 6784 0.820891 CTGTATGCCCCCATCACAGC 60.821 60.000 0.00 0.00 32.11 4.40
3273 6785 0.820891 GCTGTATGCCCCCATCACAG 60.821 60.000 0.00 0.00 36.82 3.66
3274 6786 1.227102 GCTGTATGCCCCCATCACA 59.773 57.895 0.00 0.00 35.15 3.58
3275 6787 1.103398 GTGCTGTATGCCCCCATCAC 61.103 60.000 0.00 0.00 42.00 3.06
3276 6788 1.227102 GTGCTGTATGCCCCCATCA 59.773 57.895 0.00 0.00 42.00 3.07
3277 6789 1.103398 GTGTGCTGTATGCCCCCATC 61.103 60.000 0.00 0.00 42.00 3.51
3278 6790 1.076777 GTGTGCTGTATGCCCCCAT 60.077 57.895 0.00 0.00 42.00 4.00
3279 6791 2.354729 GTGTGCTGTATGCCCCCA 59.645 61.111 0.00 0.00 42.00 4.96
3280 6792 2.824041 CGTGTGCTGTATGCCCCC 60.824 66.667 0.00 0.00 42.00 5.40
3281 6793 2.106683 GTCGTGTGCTGTATGCCCC 61.107 63.158 0.00 0.00 42.00 5.80
3282 6794 2.452813 CGTCGTGTGCTGTATGCCC 61.453 63.158 0.00 0.00 42.00 5.36
3283 6795 1.413767 CTCGTCGTGTGCTGTATGCC 61.414 60.000 0.00 0.00 42.00 4.40
3284 6796 1.991430 CTCGTCGTGTGCTGTATGC 59.009 57.895 0.00 0.00 43.25 3.14
3285 6797 1.733416 CGCTCGTCGTGTGCTGTATG 61.733 60.000 0.00 0.00 34.94 2.39
3286 6798 1.514228 CGCTCGTCGTGTGCTGTAT 60.514 57.895 0.00 0.00 34.94 2.29
3287 6799 2.127003 CGCTCGTCGTGTGCTGTA 60.127 61.111 0.00 0.00 34.94 2.74
3316 7132 1.667154 AAGGCATCTCGCACTCGCTA 61.667 55.000 0.00 0.00 45.17 4.26
3318 7134 2.510238 AAGGCATCTCGCACTCGC 60.510 61.111 0.00 0.00 45.17 5.03
3334 7150 2.032528 CCCCTCGACTTGCAGCAA 59.967 61.111 7.81 7.81 0.00 3.91
3452 7270 4.710324 ACTTTTGTTCGTTGGATCTGGTA 58.290 39.130 0.00 0.00 0.00 3.25
3474 7292 1.678728 CCTAGCCCTTCGATGCAACAA 60.679 52.381 0.00 0.00 0.00 2.83
3477 7295 0.465705 CTCCTAGCCCTTCGATGCAA 59.534 55.000 0.00 0.00 0.00 4.08
3485 7303 2.764547 GGTCGCCTCCTAGCCCTT 60.765 66.667 0.00 0.00 0.00 3.95
3537 7355 9.915629 ATATAAGTCTTTTTAGATAGGCGACTG 57.084 33.333 0.00 0.00 43.88 3.51
3550 7368 8.963725 CCCCCGTTCTTAAATATAAGTCTTTTT 58.036 33.333 0.00 0.00 39.65 1.94
3551 7369 8.330993 TCCCCCGTTCTTAAATATAAGTCTTTT 58.669 33.333 0.00 0.00 39.65 2.27
3552 7370 7.864770 TCCCCCGTTCTTAAATATAAGTCTTT 58.135 34.615 0.00 0.00 39.65 2.52
3553 7371 7.126879 ACTCCCCCGTTCTTAAATATAAGTCTT 59.873 37.037 0.00 0.00 39.65 3.01
3554 7372 6.614496 ACTCCCCCGTTCTTAAATATAAGTCT 59.386 38.462 0.00 0.00 39.65 3.24
3555 7373 6.824553 ACTCCCCCGTTCTTAAATATAAGTC 58.175 40.000 0.00 0.00 39.65 3.01
3556 7374 6.819947 ACTCCCCCGTTCTTAAATATAAGT 57.180 37.500 0.00 0.00 39.65 2.24
3557 7375 7.960262 ACTACTCCCCCGTTCTTAAATATAAG 58.040 38.462 0.00 0.00 39.97 1.73
3558 7376 7.015584 GGACTACTCCCCCGTTCTTAAATATAA 59.984 40.741 0.00 0.00 0.00 0.98
3559 7377 6.494835 GGACTACTCCCCCGTTCTTAAATATA 59.505 42.308 0.00 0.00 0.00 0.86
3560 7378 5.306419 GGACTACTCCCCCGTTCTTAAATAT 59.694 44.000 0.00 0.00 0.00 1.28
3561 7379 4.651045 GGACTACTCCCCCGTTCTTAAATA 59.349 45.833 0.00 0.00 0.00 1.40
3562 7380 3.453717 GGACTACTCCCCCGTTCTTAAAT 59.546 47.826 0.00 0.00 0.00 1.40
3563 7381 2.833943 GGACTACTCCCCCGTTCTTAAA 59.166 50.000 0.00 0.00 0.00 1.52
3564 7382 2.460669 GGACTACTCCCCCGTTCTTAA 58.539 52.381 0.00 0.00 0.00 1.85
3565 7383 1.683011 CGGACTACTCCCCCGTTCTTA 60.683 57.143 0.00 0.00 38.55 2.10
3566 7384 0.969409 CGGACTACTCCCCCGTTCTT 60.969 60.000 0.00 0.00 38.55 2.52
3567 7385 1.379576 CGGACTACTCCCCCGTTCT 60.380 63.158 0.00 0.00 38.55 3.01
3568 7386 3.073742 GCGGACTACTCCCCCGTTC 62.074 68.421 0.00 0.00 44.63 3.95
3569 7387 3.073101 GCGGACTACTCCCCCGTT 61.073 66.667 0.00 0.00 44.63 4.44
3570 7388 3.674050 ATGCGGACTACTCCCCCGT 62.674 63.158 0.00 0.00 44.63 5.28
3571 7389 2.838225 ATGCGGACTACTCCCCCG 60.838 66.667 0.00 0.00 45.51 5.73
3572 7390 2.064581 ACATGCGGACTACTCCCCC 61.065 63.158 0.00 0.00 31.93 5.40
3573 7391 1.144057 CACATGCGGACTACTCCCC 59.856 63.158 0.00 0.00 31.93 4.81
3574 7392 0.249398 AACACATGCGGACTACTCCC 59.751 55.000 0.00 0.00 31.93 4.30
3575 7393 1.641577 GAACACATGCGGACTACTCC 58.358 55.000 0.00 0.00 0.00 3.85
3576 7394 1.067142 TGGAACACATGCGGACTACTC 60.067 52.381 0.00 0.00 0.00 2.59
3577 7395 0.973632 TGGAACACATGCGGACTACT 59.026 50.000 0.00 0.00 0.00 2.57
3578 7396 3.525619 TGGAACACATGCGGACTAC 57.474 52.632 0.00 0.00 0.00 2.73
3609 7427 9.571816 CTAATACCAGTAGCTAGGTACTAACTT 57.428 37.037 29.10 21.42 42.17 2.66
3613 7431 8.267620 TGACTAATACCAGTAGCTAGGTACTA 57.732 38.462 29.10 17.47 42.74 1.82
3695 7594 4.414337 AAGCCTCTATTAGTGCCTCAAG 57.586 45.455 4.94 0.00 0.00 3.02
3696 7595 4.844349 AAAGCCTCTATTAGTGCCTCAA 57.156 40.909 4.94 0.00 0.00 3.02
3712 7611 5.516090 TGACGTTTTTCAGTCAATAAAGCC 58.484 37.500 0.00 0.00 43.47 4.35
3725 7624 8.958175 TTGTATGACCATATTTGACGTTTTTC 57.042 30.769 0.00 0.00 0.00 2.29
3753 7652 4.528076 AGGTCAGGTCTAAGCTCTATGA 57.472 45.455 0.00 0.00 0.00 2.15
3771 7674 2.308570 TGTCATCCTGGTATGCAAAGGT 59.691 45.455 0.00 0.00 32.59 3.50
3874 7780 9.185192 GGCATATTTAATCAAAGTGAATGTAGC 57.815 33.333 0.00 0.00 0.00 3.58
3877 7783 8.530311 TGTGGCATATTTAATCAAAGTGAATGT 58.470 29.630 0.00 0.00 0.00 2.71
3881 7787 8.291191 TGATGTGGCATATTTAATCAAAGTGA 57.709 30.769 0.00 0.00 0.00 3.41
4009 7915 5.483685 TTATGATTATCACCTTCCCTCCG 57.516 43.478 0.00 0.00 0.00 4.63
4171 8077 5.628797 TGATATTGTAGCCACTGAATCCA 57.371 39.130 0.00 0.00 0.00 3.41
4248 8154 7.880160 ATTTACCAAGACTGCATAGCAAATA 57.120 32.000 0.00 0.00 38.41 1.40
4250 8156 7.695480 TTATTTACCAAGACTGCATAGCAAA 57.305 32.000 0.00 0.00 38.41 3.68
4261 8167 8.915654 CAAAGCTTGAACATTATTTACCAAGAC 58.084 33.333 0.00 0.00 34.57 3.01
4262 8168 8.637986 ACAAAGCTTGAACATTATTTACCAAGA 58.362 29.630 0.00 0.00 34.57 3.02
4371 8277 6.183360 GGCTAATTTGAGCTAATTAAACCCGT 60.183 38.462 3.82 0.00 42.43 5.28
4383 8289 3.153919 TGAAAACCGGCTAATTTGAGCT 58.846 40.909 0.00 0.00 42.43 4.09
4401 8308 2.304470 TCATCTCCGACCCAAACATGAA 59.696 45.455 0.00 0.00 0.00 2.57
4415 8322 6.630444 ACATAAATGAGTGCATTCATCTCC 57.370 37.500 23.16 0.00 43.71 3.71
4426 8333 5.755375 ACGCTCCAAGATACATAAATGAGTG 59.245 40.000 0.00 0.00 0.00 3.51
4448 8355 5.879237 ACAATTTGGAGTAACATGCATACG 58.121 37.500 0.00 0.00 0.00 3.06
4536 8452 6.256321 GGCAGCAAAAACTGATAAATACCATG 59.744 38.462 0.00 0.00 40.25 3.66
4537 8453 6.070881 TGGCAGCAAAAACTGATAAATACCAT 60.071 34.615 0.00 0.00 40.25 3.55
4538 8454 5.244851 TGGCAGCAAAAACTGATAAATACCA 59.755 36.000 0.00 0.00 40.25 3.25
4539 8455 5.576774 GTGGCAGCAAAAACTGATAAATACC 59.423 40.000 0.00 0.00 40.25 2.73
4540 8456 5.286082 CGTGGCAGCAAAAACTGATAAATAC 59.714 40.000 0.00 0.00 40.25 1.89
4541 8457 5.182190 TCGTGGCAGCAAAAACTGATAAATA 59.818 36.000 0.00 0.00 40.25 1.40
4542 8458 4.022416 TCGTGGCAGCAAAAACTGATAAAT 60.022 37.500 0.00 0.00 40.25 1.40
4543 8459 3.316588 TCGTGGCAGCAAAAACTGATAAA 59.683 39.130 0.00 0.00 40.25 1.40
4544 8460 2.881513 TCGTGGCAGCAAAAACTGATAA 59.118 40.909 0.00 0.00 40.25 1.75
4548 8464 2.138596 ATTCGTGGCAGCAAAAACTG 57.861 45.000 0.00 0.00 40.80 3.16
4549 8465 2.100584 TCAATTCGTGGCAGCAAAAACT 59.899 40.909 0.00 0.00 0.00 2.66
4563 8479 3.423515 CCTTCGTCATGTGTGTCAATTCG 60.424 47.826 0.00 0.00 0.00 3.34
4602 8518 5.911378 TGTTGCCTTGCATTGATATGTTA 57.089 34.783 0.00 0.00 38.76 2.41
4686 8603 4.862574 CGAGACCACATAGAATTCAACGAA 59.137 41.667 8.44 0.00 0.00 3.85
4699 8616 0.179100 CGATGAAGGCGAGACCACAT 60.179 55.000 0.00 0.00 43.14 3.21
4720 8637 2.564771 GCATCCCGATCACATCAAAGA 58.435 47.619 0.00 0.00 0.00 2.52
4723 8640 0.839277 AGGCATCCCGATCACATCAA 59.161 50.000 0.00 0.00 35.76 2.57
4727 8644 1.688884 TCCAGGCATCCCGATCACA 60.689 57.895 0.00 0.00 35.76 3.58
4732 8649 1.043116 CACTAGTCCAGGCATCCCGA 61.043 60.000 0.00 0.00 35.76 5.14
4790 8707 5.008415 AGCTCTTTATTCGGATTGCATCTTG 59.992 40.000 0.00 0.00 0.00 3.02
4793 8710 5.928839 TCTAGCTCTTTATTCGGATTGCATC 59.071 40.000 0.00 0.00 0.00 3.91
4901 8818 0.652592 GTTCCATTCATCGACCGCAG 59.347 55.000 0.00 0.00 0.00 5.18
4908 8825 4.158384 CGAAAGTTTGGTTCCATTCATCG 58.842 43.478 0.00 0.00 0.00 3.84
4981 8898 3.602483 TCCCACTTCGTAACCTTATTGC 58.398 45.455 0.00 0.00 0.00 3.56
4982 8899 6.563222 TTTTCCCACTTCGTAACCTTATTG 57.437 37.500 0.00 0.00 0.00 1.90
5068 8989 2.228582 CGTGGCCAGTGATGAAAATGAA 59.771 45.455 5.11 0.00 0.00 2.57
5081 9002 3.734231 CGTTATTACATAGTCGTGGCCAG 59.266 47.826 5.11 0.00 0.00 4.85
5085 9006 7.484007 GGATATGTCGTTATTACATAGTCGTGG 59.516 40.741 0.00 0.00 41.71 4.94
5088 9009 6.685828 CGGGATATGTCGTTATTACATAGTCG 59.314 42.308 0.00 0.00 41.71 4.18
5110 9031 0.541392 TGTGGATCCATTCTGTCGGG 59.459 55.000 19.62 0.00 0.00 5.14
5152 9073 6.989169 ACTAGAAGACATGATGCTTGATTACC 59.011 38.462 0.00 0.00 0.00 2.85
5165 9086 6.047231 TCATGCATCTCAACTAGAAGACATG 58.953 40.000 0.00 7.53 37.99 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.