Multiple sequence alignment - TraesCS1D01G337400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G337400 chr1D 100.000 6835 0 0 1 6835 427147867 427154701 0.000000e+00 12622.0
1 TraesCS1D01G337400 chr1A 92.071 2762 144 33 1795 4535 522230604 522233311 0.000000e+00 3818.0
2 TraesCS1D01G337400 chr1A 91.966 1419 82 10 4540 5940 522233636 522235040 0.000000e+00 1960.0
3 TraesCS1D01G337400 chr1A 90.703 839 40 12 961 1767 522229777 522230609 0.000000e+00 1083.0
4 TraesCS1D01G337400 chr1A 88.511 235 8 9 556 775 522229513 522229743 4.060000e-67 267.0
5 TraesCS1D01G337400 chr1A 95.327 107 5 0 365 471 522228997 522229103 3.280000e-38 171.0
6 TraesCS1D01G337400 chr1A 93.333 45 1 1 28 70 522228594 522228638 1.590000e-06 65.8
7 TraesCS1D01G337400 chr1A 94.872 39 2 0 1689 1727 522230472 522230510 2.060000e-05 62.1
8 TraesCS1D01G337400 chr1B 92.197 1730 91 13 4334 6047 577610471 577612172 0.000000e+00 2407.0
9 TraesCS1D01G337400 chr1B 95.997 1174 29 7 1633 2795 577607448 577608614 0.000000e+00 1892.0
10 TraesCS1D01G337400 chr1B 94.839 1027 34 10 2914 3925 577608644 577609666 0.000000e+00 1585.0
11 TraesCS1D01G337400 chr1B 91.518 1120 46 19 515 1602 577606350 577607452 0.000000e+00 1496.0
12 TraesCS1D01G337400 chr1B 92.547 322 13 4 3924 4235 577609905 577610225 1.050000e-122 451.0
13 TraesCS1D01G337400 chr1B 81.675 382 63 7 6322 6699 49874840 49875218 1.850000e-80 311.0
14 TraesCS1D01G337400 chr1B 96.970 33 1 0 2 34 577606032 577606064 1.000000e-03 56.5
15 TraesCS1D01G337400 chr3D 80.000 660 101 13 6180 6834 598361456 598360823 6.250000e-125 459.0
16 TraesCS1D01G337400 chr3D 80.748 535 96 7 6180 6710 19293895 19293364 1.770000e-110 411.0
17 TraesCS1D01G337400 chr3D 82.500 440 73 4 6258 6694 532193967 532194405 3.870000e-102 383.0
18 TraesCS1D01G337400 chr3D 82.620 397 64 5 6300 6694 532190389 532190782 5.070000e-91 346.0
19 TraesCS1D01G337400 chr3D 79.508 488 72 11 6348 6832 7109113 7108651 8.550000e-84 322.0
20 TraesCS1D01G337400 chr3D 79.362 470 83 7 6180 6646 466001586 466001128 1.110000e-82 318.0
21 TraesCS1D01G337400 chr4D 79.607 662 106 12 6179 6835 3331175 3331812 1.350000e-121 448.0
22 TraesCS1D01G337400 chr4D 80.147 136 20 4 6051 6179 505970166 505970031 2.030000e-15 95.3
23 TraesCS1D01G337400 chr3B 78.771 537 84 18 6299 6831 458162134 458162644 3.950000e-87 333.0
24 TraesCS1D01G337400 chr3B 80.506 395 70 6 6320 6710 141287714 141287323 5.180000e-76 296.0
25 TraesCS1D01G337400 chr2A 76.672 583 100 17 6258 6834 137258850 137258298 2.410000e-74 291.0
26 TraesCS1D01G337400 chr2A 84.071 113 14 4 1380 1492 673007993 673007885 9.380000e-19 106.0
27 TraesCS1D01G337400 chr5A 76.077 418 70 14 6413 6826 703412233 703411842 2.520000e-44 191.0
28 TraesCS1D01G337400 chr5A 88.333 60 7 0 6180 6239 563781906 563781965 9.510000e-09 73.1
29 TraesCS1D01G337400 chr7A 89.381 113 10 2 6724 6834 730876525 730876413 2.570000e-29 141.0
30 TraesCS1D01G337400 chr7A 76.577 222 49 3 6488 6707 24352650 24352430 1.200000e-22 119.0
31 TraesCS1D01G337400 chr2D 75.938 320 48 19 6511 6827 418765680 418765387 3.320000e-28 137.0
32 TraesCS1D01G337400 chrUn 76.173 277 40 11 6522 6798 2704453 2704203 9.310000e-24 122.0
33 TraesCS1D01G337400 chrUn 85.000 60 6 3 6257 6314 362225202 362225260 2.660000e-04 58.4
34 TraesCS1D01G337400 chrUn 85.000 60 6 3 6257 6314 429525496 429525554 2.660000e-04 58.4
35 TraesCS1D01G337400 chrUn 85.000 60 6 3 6257 6314 456271179 456271121 2.660000e-04 58.4
36 TraesCS1D01G337400 chr4A 86.087 115 12 2 6724 6834 170706767 170706881 3.350000e-23 121.0
37 TraesCS1D01G337400 chr7D 84.426 122 15 3 6717 6834 47643159 47643038 4.330000e-22 117.0
38 TraesCS1D01G337400 chr6A 74.897 243 36 14 6051 6269 15805007 15805248 3.400000e-13 87.9
39 TraesCS1D01G337400 chr6D 75.714 210 29 12 6060 6247 14593441 14593232 1.220000e-12 86.1
40 TraesCS1D01G337400 chr2B 72.785 316 56 17 6050 6338 775122809 775123121 5.680000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G337400 chr1D 427147867 427154701 6834 False 12622.000000 12622 100.000000 1 6835 1 chr1D.!!$F1 6834
1 TraesCS1D01G337400 chr1A 522228594 522235040 6446 False 1060.985714 3818 92.397571 28 5940 7 chr1A.!!$F1 5912
2 TraesCS1D01G337400 chr1B 577606032 577612172 6140 False 1314.583333 2407 94.011333 2 6047 6 chr1B.!!$F2 6045
3 TraesCS1D01G337400 chr3D 598360823 598361456 633 True 459.000000 459 80.000000 6180 6834 1 chr3D.!!$R4 654
4 TraesCS1D01G337400 chr3D 19293364 19293895 531 True 411.000000 411 80.748000 6180 6710 1 chr3D.!!$R2 530
5 TraesCS1D01G337400 chr3D 532190389 532194405 4016 False 364.500000 383 82.560000 6258 6694 2 chr3D.!!$F1 436
6 TraesCS1D01G337400 chr4D 3331175 3331812 637 False 448.000000 448 79.607000 6179 6835 1 chr4D.!!$F1 656
7 TraesCS1D01G337400 chr3B 458162134 458162644 510 False 333.000000 333 78.771000 6299 6831 1 chr3B.!!$F1 532
8 TraesCS1D01G337400 chr2A 137258298 137258850 552 True 291.000000 291 76.672000 6258 6834 1 chr2A.!!$R1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 639 0.031994 CCCCACGAAAGCAACCTTTG 59.968 55.000 0.00 0.0 41.22 2.77 F
512 658 0.179034 GCCGCATCTCATTTCCTCCT 60.179 55.000 0.00 0.0 0.00 3.69 F
937 1434 0.439600 GGTGCGCATTCATTGTTTGC 59.560 50.000 15.91 0.0 0.00 3.68 F
1623 2195 0.675837 GCAGAGAGTTGGCATCAGCA 60.676 55.000 0.00 0.0 44.61 4.41 F
1786 2360 1.000163 TGTGTGCGTGTTTGGTGTTTT 60.000 42.857 0.00 0.0 0.00 2.43 F
2085 2674 2.543777 TGCTCTGTGTAAGTGTTCCC 57.456 50.000 0.00 0.0 0.00 3.97 F
2876 3476 2.615869 GTGAGAGGTGAGCTAGCTTTG 58.384 52.381 20.42 0.0 37.23 2.77 F
3959 4816 0.615850 AACTCTGGCTTGTAGGCTCC 59.384 55.000 0.00 0.0 41.96 4.70 F
4794 6131 1.153086 GGTAGGTCCTGCAGCATGG 60.153 63.158 8.66 0.0 35.86 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 2040 0.107017 ATGGAAATGGGAGCGACTGG 60.107 55.000 0.00 0.0 0.00 4.00 R
1604 2176 0.675837 TGCTGATGCCAACTCTCTGC 60.676 55.000 0.00 0.0 38.71 4.26 R
1786 2360 1.067565 CAGAGTGAGCTGGAACGCTTA 60.068 52.381 0.00 0.0 38.19 3.09 R
3280 3897 0.035152 ACCATCATCGCCTCTGCAAA 60.035 50.000 0.00 0.0 37.32 3.68 R
3281 3898 0.745486 CACCATCATCGCCTCTGCAA 60.745 55.000 0.00 0.0 37.32 4.08 R
3283 3900 0.879400 CTCACCATCATCGCCTCTGC 60.879 60.000 0.00 0.0 0.00 4.26 R
4712 6049 0.459237 CTCGCTTCGAACTGGATGCT 60.459 55.000 0.00 0.0 34.74 3.79 R
5253 6602 0.175760 TGAACTGCCCGAGAGCATAC 59.824 55.000 0.00 0.0 43.09 2.39 R
6735 8109 0.108424 GGCGCTCTTCTGTGTCATCT 60.108 55.000 7.64 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.978010 CAGCGGACCCGTTTGCTT 60.978 61.111 10.37 0.00 42.09 3.91
72 121 1.666553 CTGACTTGCCGTGCCGTTA 60.667 57.895 0.00 0.00 0.00 3.18
74 123 1.957186 GACTTGCCGTGCCGTTACA 60.957 57.895 0.00 0.00 0.00 2.41
102 153 3.438087 TGTGACGGTTTTTCCACGTAAAA 59.562 39.130 0.00 0.00 41.40 1.52
167 231 3.798337 CACACTTGTCGTTTAACCTACGT 59.202 43.478 0.00 0.00 39.84 3.57
171 235 5.340667 CACTTGTCGTTTAACCTACGTACTC 59.659 44.000 0.00 0.00 39.84 2.59
219 362 5.123820 CACACTTTTCCTTGAACTGAACTGA 59.876 40.000 0.00 0.00 0.00 3.41
222 365 6.694411 CACTTTTCCTTGAACTGAACTGATTG 59.306 38.462 0.00 0.00 0.00 2.67
243 389 7.933577 TGATTGCTTTTCTCAGTAAAGAGAGAA 59.066 33.333 7.91 0.00 46.09 2.87
256 402 9.118300 CAGTAAAGAGAGAATGCATTCCTTTAT 57.882 33.333 30.64 22.75 37.51 1.40
257 403 9.692325 AGTAAAGAGAGAATGCATTCCTTTATT 57.308 29.630 30.64 27.10 37.51 1.40
261 407 6.426328 AGAGAGAATGCATTCCTTTATTAGCG 59.574 38.462 31.05 0.00 37.51 4.26
263 409 3.923017 ATGCATTCCTTTATTAGCGGC 57.077 42.857 0.00 0.00 0.00 6.53
266 412 2.030805 GCATTCCTTTATTAGCGGCAGG 60.031 50.000 1.45 0.00 0.00 4.85
267 413 3.476552 CATTCCTTTATTAGCGGCAGGA 58.523 45.455 1.45 1.03 31.46 3.86
268 414 3.637911 TTCCTTTATTAGCGGCAGGAA 57.362 42.857 11.81 11.81 40.62 3.36
269 415 2.914059 TCCTTTATTAGCGGCAGGAAC 58.086 47.619 1.45 0.00 30.33 3.62
270 416 1.597663 CCTTTATTAGCGGCAGGAACG 59.402 52.381 1.45 0.00 0.00 3.95
294 440 0.889186 TTCGCCCTTTGCTCAGTTCC 60.889 55.000 0.00 0.00 38.05 3.62
300 446 1.135575 CCTTTGCTCAGTTCCAATCGC 60.136 52.381 0.00 0.00 0.00 4.58
324 470 0.950071 CGACGACCGGCCCTTTAAAA 60.950 55.000 0.00 0.00 33.91 1.52
325 471 1.237533 GACGACCGGCCCTTTAAAAA 58.762 50.000 0.00 0.00 0.00 1.94
363 509 2.664851 CGTCCCACGCTCAAAGCA 60.665 61.111 0.00 0.00 42.58 3.91
432 578 0.545309 CTCTCCCCACACCCTGAGAA 60.545 60.000 0.00 0.00 33.74 2.87
471 617 0.858961 CGCAAATAGACAAGCAGCGC 60.859 55.000 0.00 0.00 37.20 5.92
472 618 0.168788 GCAAATAGACAAGCAGCGCA 59.831 50.000 11.47 0.00 0.00 6.09
473 619 1.887320 CAAATAGACAAGCAGCGCAC 58.113 50.000 11.47 0.00 0.00 5.34
474 620 0.804989 AAATAGACAAGCAGCGCACC 59.195 50.000 11.47 0.00 0.00 5.01
475 621 1.026718 AATAGACAAGCAGCGCACCC 61.027 55.000 11.47 0.00 0.00 4.61
476 622 2.876368 ATAGACAAGCAGCGCACCCC 62.876 60.000 11.47 0.00 0.00 4.95
487 633 2.909965 GCACCCCCACGAAAGCAA 60.910 61.111 0.00 0.00 0.00 3.91
488 634 3.039134 CACCCCCACGAAAGCAAC 58.961 61.111 0.00 0.00 0.00 4.17
489 635 2.203437 ACCCCCACGAAAGCAACC 60.203 61.111 0.00 0.00 0.00 3.77
490 636 2.115266 CCCCCACGAAAGCAACCT 59.885 61.111 0.00 0.00 0.00 3.50
491 637 1.530655 CCCCCACGAAAGCAACCTT 60.531 57.895 0.00 0.00 0.00 3.50
492 638 1.112916 CCCCCACGAAAGCAACCTTT 61.113 55.000 0.00 0.00 43.73 3.11
493 639 0.031994 CCCCACGAAAGCAACCTTTG 59.968 55.000 0.00 0.00 41.22 2.77
503 649 2.256391 CAACCTTTGCCGCATCTCA 58.744 52.632 0.00 0.00 0.00 3.27
504 650 0.813184 CAACCTTTGCCGCATCTCAT 59.187 50.000 0.00 0.00 0.00 2.90
505 651 1.203052 CAACCTTTGCCGCATCTCATT 59.797 47.619 0.00 0.00 0.00 2.57
506 652 1.549203 ACCTTTGCCGCATCTCATTT 58.451 45.000 0.00 0.00 0.00 2.32
507 653 1.474077 ACCTTTGCCGCATCTCATTTC 59.526 47.619 0.00 0.00 0.00 2.17
508 654 1.202336 CCTTTGCCGCATCTCATTTCC 60.202 52.381 0.00 0.00 0.00 3.13
509 655 1.747355 CTTTGCCGCATCTCATTTCCT 59.253 47.619 0.00 0.00 0.00 3.36
510 656 1.382522 TTGCCGCATCTCATTTCCTC 58.617 50.000 0.00 0.00 0.00 3.71
511 657 0.464373 TGCCGCATCTCATTTCCTCC 60.464 55.000 0.00 0.00 0.00 4.30
512 658 0.179034 GCCGCATCTCATTTCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
513 659 1.070758 GCCGCATCTCATTTCCTCCTA 59.929 52.381 0.00 0.00 0.00 2.94
516 662 2.036992 CGCATCTCATTTCCTCCTAGCT 59.963 50.000 0.00 0.00 0.00 3.32
519 665 4.275443 GCATCTCATTTCCTCCTAGCTTTG 59.725 45.833 0.00 0.00 0.00 2.77
526 672 4.373156 TTCCTCCTAGCTTTGCTTTCTT 57.627 40.909 0.00 0.00 40.44 2.52
568 1039 1.001860 GCCAGTCTCTCTCTTGCTGTT 59.998 52.381 0.00 0.00 0.00 3.16
660 1143 3.266282 GGCAACCAAACAAAGACCG 57.734 52.632 0.00 0.00 0.00 4.79
759 1242 4.393155 CACAGGCCTGGCGCTACA 62.393 66.667 35.42 0.00 37.74 2.74
760 1243 4.087892 ACAGGCCTGGCGCTACAG 62.088 66.667 35.42 8.62 37.74 2.74
761 1244 4.087892 CAGGCCTGGCGCTACAGT 62.088 66.667 26.14 0.00 36.75 3.55
849 1343 1.078143 CAGTTGGCCTACTCCCTGC 60.078 63.158 17.51 0.00 0.00 4.85
937 1434 0.439600 GGTGCGCATTCATTGTTTGC 59.560 50.000 15.91 0.00 0.00 3.68
938 1435 1.421382 GTGCGCATTCATTGTTTGCT 58.579 45.000 15.91 0.00 34.23 3.91
971 1474 4.602259 GCCGCCGCTAGCACCATA 62.602 66.667 16.45 0.00 44.04 2.74
1010 1513 4.377708 ATCCACTGCGCTGCGACA 62.378 61.111 28.07 20.84 0.00 4.35
1313 1838 4.755614 GTCGTCGGCGTCGAGCTT 62.756 66.667 27.65 0.00 46.91 3.74
1365 1890 1.797025 CCGTTCCGCTTCTTCTTCTT 58.203 50.000 0.00 0.00 0.00 2.52
1378 1903 6.346518 GCTTCTTCTTCTTCTTCTGAAACGAG 60.347 42.308 0.00 0.00 0.00 4.18
1493 2018 2.575993 CCGAGGTCAGTGCTCCTG 59.424 66.667 10.64 0.00 42.97 3.86
1494 2019 2.279069 CCGAGGTCAGTGCTCCTGT 61.279 63.158 10.64 0.00 42.19 4.00
1495 2020 1.214062 CGAGGTCAGTGCTCCTGTC 59.786 63.158 10.64 0.00 42.19 3.51
1515 2040 1.669779 CCTGCTTCAGTATCTTGCTGC 59.330 52.381 0.00 0.00 34.21 5.25
1602 2174 1.086696 ATGCATTTGGTTCGTCGGAG 58.913 50.000 0.00 0.00 0.00 4.63
1603 2175 1.134694 GCATTTGGTTCGTCGGAGC 59.865 57.895 0.00 0.00 0.00 4.70
1604 2176 1.419922 CATTTGGTTCGTCGGAGCG 59.580 57.895 0.00 0.00 0.00 5.03
1605 2177 2.388232 ATTTGGTTCGTCGGAGCGC 61.388 57.895 0.00 0.00 0.00 5.92
1606 2178 3.793775 TTTGGTTCGTCGGAGCGCA 62.794 57.895 11.47 0.00 0.00 6.09
1607 2179 4.717629 TGGTTCGTCGGAGCGCAG 62.718 66.667 11.47 0.00 0.00 5.18
1608 2180 4.415332 GGTTCGTCGGAGCGCAGA 62.415 66.667 11.47 2.59 0.00 4.26
1609 2181 2.876645 GTTCGTCGGAGCGCAGAG 60.877 66.667 11.47 0.00 0.00 3.35
1610 2182 3.053896 TTCGTCGGAGCGCAGAGA 61.054 61.111 11.47 1.72 0.00 3.10
1611 2183 3.040414 TTCGTCGGAGCGCAGAGAG 62.040 63.158 11.47 3.57 0.00 3.20
1612 2184 3.805307 CGTCGGAGCGCAGAGAGT 61.805 66.667 11.47 0.00 0.00 3.24
1613 2185 2.569134 GTCGGAGCGCAGAGAGTT 59.431 61.111 11.47 0.00 0.00 3.01
1614 2186 1.803519 GTCGGAGCGCAGAGAGTTG 60.804 63.158 11.47 0.00 0.00 3.16
1615 2187 2.507992 CGGAGCGCAGAGAGTTGG 60.508 66.667 11.47 0.00 0.00 3.77
1616 2188 2.817396 GGAGCGCAGAGAGTTGGC 60.817 66.667 11.47 0.00 0.00 4.52
1617 2189 2.047844 GAGCGCAGAGAGTTGGCA 60.048 61.111 11.47 0.00 0.00 4.92
1618 2190 1.449246 GAGCGCAGAGAGTTGGCAT 60.449 57.895 11.47 0.00 0.00 4.40
1619 2191 1.427592 GAGCGCAGAGAGTTGGCATC 61.428 60.000 11.47 0.00 0.00 3.91
1620 2192 1.742880 GCGCAGAGAGTTGGCATCA 60.743 57.895 0.30 0.00 0.00 3.07
1621 2193 1.703438 GCGCAGAGAGTTGGCATCAG 61.703 60.000 0.30 0.00 0.00 2.90
1622 2194 1.703438 CGCAGAGAGTTGGCATCAGC 61.703 60.000 0.00 0.00 41.10 4.26
1623 2195 0.675837 GCAGAGAGTTGGCATCAGCA 60.676 55.000 0.00 0.00 44.61 4.41
1624 2196 1.817357 CAGAGAGTTGGCATCAGCAA 58.183 50.000 0.00 0.00 44.61 3.91
1625 2197 2.366533 CAGAGAGTTGGCATCAGCAAT 58.633 47.619 0.00 0.00 44.61 3.56
1626 2198 3.538591 CAGAGAGTTGGCATCAGCAATA 58.461 45.455 0.00 0.00 44.61 1.90
1627 2199 4.135306 CAGAGAGTTGGCATCAGCAATAT 58.865 43.478 0.00 0.00 44.61 1.28
1628 2200 4.023963 CAGAGAGTTGGCATCAGCAATATG 60.024 45.833 0.00 0.00 44.61 1.78
1629 2201 3.220110 AGAGTTGGCATCAGCAATATGG 58.780 45.455 0.00 0.00 44.61 2.74
1630 2202 1.684983 AGTTGGCATCAGCAATATGGC 59.315 47.619 11.12 11.12 46.90 4.40
1631 2203 1.684983 GTTGGCATCAGCAATATGGCT 59.315 47.619 16.61 0.00 46.85 4.75
1632 2204 2.076207 TGGCATCAGCAATATGGCTT 57.924 45.000 0.36 0.00 46.85 4.35
1633 2205 1.958579 TGGCATCAGCAATATGGCTTC 59.041 47.619 0.36 0.00 46.85 3.86
1634 2206 1.068748 GGCATCAGCAATATGGCTTCG 60.069 52.381 0.36 0.00 42.71 3.79
1635 2207 1.068748 GCATCAGCAATATGGCTTCGG 60.069 52.381 0.36 0.00 42.71 4.30
1636 2208 2.497138 CATCAGCAATATGGCTTCGGA 58.503 47.619 0.36 0.00 42.71 4.55
1641 2213 1.599542 GCAATATGGCTTCGGACAGTC 59.400 52.381 0.00 0.00 35.84 3.51
1672 2244 6.899089 TGGAGCCTGAAAGATGAACATTATA 58.101 36.000 0.00 0.00 34.07 0.98
1673 2245 7.520798 TGGAGCCTGAAAGATGAACATTATAT 58.479 34.615 0.00 0.00 34.07 0.86
1684 2258 8.421673 AGATGAACATTATATCTCATGCATCG 57.578 34.615 0.00 0.00 35.02 3.84
1710 2284 1.522668 TCGGCAGTGAAATGTTGGAG 58.477 50.000 0.00 0.00 0.00 3.86
1720 2294 3.896888 TGAAATGTTGGAGCCTGAAACAT 59.103 39.130 0.00 0.00 44.32 2.71
1786 2360 1.000163 TGTGTGCGTGTTTGGTGTTTT 60.000 42.857 0.00 0.00 0.00 2.43
2085 2674 2.543777 TGCTCTGTGTAAGTGTTCCC 57.456 50.000 0.00 0.00 0.00 3.97
2325 2914 7.437793 AAAATAATTCCAAACCTGCACATTG 57.562 32.000 0.00 0.00 0.00 2.82
2326 2915 5.999205 ATAATTCCAAACCTGCACATTGA 57.001 34.783 3.57 0.00 0.00 2.57
2338 2927 6.418101 ACCTGCACATTGATATAGTCACTTT 58.582 36.000 0.00 0.00 36.32 2.66
2497 3086 7.765695 ACATGTCATGTTTACTTGGAGATTT 57.234 32.000 12.87 0.00 41.63 2.17
2498 3087 8.181904 ACATGTCATGTTTACTTGGAGATTTT 57.818 30.769 12.87 0.00 41.63 1.82
2499 3088 8.084073 ACATGTCATGTTTACTTGGAGATTTTG 58.916 33.333 12.87 0.00 41.63 2.44
2538 3130 7.550551 CGATATCCATATACCTTCATGCTTTGT 59.449 37.037 0.00 0.00 0.00 2.83
2637 3230 6.260050 TGGTTATGAAATCGGTTAGCTTGATC 59.740 38.462 0.00 0.00 0.00 2.92
2638 3231 6.355638 GTTATGAAATCGGTTAGCTTGATCG 58.644 40.000 0.00 0.00 0.00 3.69
2795 3395 9.677567 TTGCTGACTTAAATTATGAAAGTGAAC 57.322 29.630 0.00 0.00 33.72 3.18
2805 3405 8.786826 AATTATGAAAGTGAACTTATGTCCGA 57.213 30.769 0.00 0.00 34.61 4.55
2806 3406 7.591006 TTATGAAAGTGAACTTATGTCCGAC 57.409 36.000 0.00 0.00 34.61 4.79
2807 3407 4.312443 TGAAAGTGAACTTATGTCCGACC 58.688 43.478 0.00 0.00 34.61 4.79
2809 3409 5.244402 TGAAAGTGAACTTATGTCCGACCTA 59.756 40.000 0.00 0.00 34.61 3.08
2810 3410 5.733620 AAGTGAACTTATGTCCGACCTAA 57.266 39.130 0.00 0.00 33.79 2.69
2811 3411 5.733620 AGTGAACTTATGTCCGACCTAAA 57.266 39.130 0.00 0.00 0.00 1.85
2812 3412 6.295719 AGTGAACTTATGTCCGACCTAAAT 57.704 37.500 0.00 0.00 0.00 1.40
2813 3413 6.708285 AGTGAACTTATGTCCGACCTAAATT 58.292 36.000 0.00 0.00 0.00 1.82
2814 3414 7.844009 AGTGAACTTATGTCCGACCTAAATTA 58.156 34.615 0.00 0.00 0.00 1.40
2815 3415 8.316214 AGTGAACTTATGTCCGACCTAAATTAA 58.684 33.333 0.00 0.00 0.00 1.40
2817 3417 8.316214 TGAACTTATGTCCGACCTAAATTAAGT 58.684 33.333 0.00 0.00 0.00 2.24
2819 3419 9.511272 AACTTATGTCCGACCTAAATTAAGTTT 57.489 29.630 0.00 0.00 32.28 2.66
2820 3420 9.159364 ACTTATGTCCGACCTAAATTAAGTTTC 57.841 33.333 0.00 0.00 0.00 2.78
2821 3421 9.379791 CTTATGTCCGACCTAAATTAAGTTTCT 57.620 33.333 0.00 0.00 0.00 2.52
2822 3422 7.611213 ATGTCCGACCTAAATTAAGTTTCTG 57.389 36.000 0.00 0.00 0.00 3.02
2823 3423 6.527423 TGTCCGACCTAAATTAAGTTTCTGT 58.473 36.000 0.00 0.00 0.00 3.41
2824 3424 6.993902 TGTCCGACCTAAATTAAGTTTCTGTT 59.006 34.615 0.00 0.00 0.00 3.16
2825 3425 8.149647 TGTCCGACCTAAATTAAGTTTCTGTTA 58.850 33.333 0.00 0.00 0.00 2.41
2826 3426 8.654215 GTCCGACCTAAATTAAGTTTCTGTTAG 58.346 37.037 0.00 0.00 0.00 2.34
2849 3449 3.466836 ACGCTCTTGTTGTCATTTCTCA 58.533 40.909 0.00 0.00 0.00 3.27
2858 3458 6.990341 TGTTGTCATTTCTCATGATAGGTG 57.010 37.500 0.00 0.00 0.00 4.00
2859 3459 6.710278 TGTTGTCATTTCTCATGATAGGTGA 58.290 36.000 0.00 0.00 0.00 4.02
2860 3460 6.820152 TGTTGTCATTTCTCATGATAGGTGAG 59.180 38.462 0.00 0.00 43.46 3.51
2876 3476 2.615869 GTGAGAGGTGAGCTAGCTTTG 58.384 52.381 20.42 0.00 37.23 2.77
2890 3490 9.019656 TGAGCTAGCTTTGGTTTTATTTTATCA 57.980 29.630 20.42 2.89 0.00 2.15
2910 3510 9.868160 TTTATCAGAGATCCTAGTGTGATTAGA 57.132 33.333 0.00 0.00 0.00 2.10
3018 3630 6.850555 ACGTCATCTTCAGTAACTTACTACC 58.149 40.000 0.95 0.00 37.23 3.18
3302 3919 0.879400 GCAGAGGCGATGATGGTGAG 60.879 60.000 0.00 0.00 0.00 3.51
3488 4105 9.643693 CAATGCACATTAAGTTAGGAAATTCTT 57.356 29.630 0.00 0.00 0.00 2.52
3556 4173 2.029918 GTCCTTTTGTCTTCATGGTGCC 60.030 50.000 0.00 0.00 0.00 5.01
3625 4242 8.398665 GCTAGTGACCTAAATAATTCCAGTTTG 58.601 37.037 0.00 0.00 0.00 2.93
3736 4353 7.976175 GGAATGAGGTTTAAAGATTCCAATGAC 59.024 37.037 16.35 0.00 41.16 3.06
3915 4532 5.715279 GGAGATGCCTACAGGTATACATGTA 59.285 44.000 24.44 24.44 40.72 2.29
3959 4816 0.615850 AACTCTGGCTTGTAGGCTCC 59.384 55.000 0.00 0.00 41.96 4.70
4028 4888 5.701290 ACTGTTTCTCCTGAAATAAAGACCG 59.299 40.000 0.00 0.00 43.14 4.79
4031 4891 3.596214 TCTCCTGAAATAAAGACCGTGC 58.404 45.455 0.00 0.00 0.00 5.34
4101 4961 5.580998 TCAGTATTTCAGAGACCAGGTAGT 58.419 41.667 0.00 0.00 0.00 2.73
4116 4976 8.315482 AGACCAGGTAGTTCTCTTTCTAAAATC 58.685 37.037 0.00 0.00 0.00 2.17
4142 5002 3.380954 TGAGTGCACTTTCTGAATTTGCA 59.619 39.130 22.65 17.65 0.00 4.08
4157 5023 7.119699 TCTGAATTTGCAATAGTGTACTTGGAG 59.880 37.037 0.00 0.00 0.00 3.86
4171 5037 7.014422 AGTGTACTTGGAGCAGGTAGTTATATC 59.986 40.741 0.00 0.00 0.00 1.63
4312 5178 6.119536 AGCCGGATCTTGTATTTACAATGAA 58.880 36.000 5.05 0.00 44.34 2.57
4314 5180 6.038271 GCCGGATCTTGTATTTACAATGAACT 59.962 38.462 5.05 0.00 44.34 3.01
4473 5487 7.820648 AGTCATAACATCATTGACCTGAAAAC 58.179 34.615 0.00 0.00 40.46 2.43
4474 5488 7.448161 AGTCATAACATCATTGACCTGAAAACA 59.552 33.333 0.00 0.00 40.46 2.83
4487 5501 8.055279 TGACCTGAAAACAGAAAATATCCATC 57.945 34.615 0.00 0.00 0.00 3.51
4526 5540 6.938030 TCCTGTTTGTAAAGTATAACCACAGG 59.062 38.462 8.01 8.01 42.29 4.00
4560 5894 7.095270 ACTTGTACTACATAGTAAGTTGTGGC 58.905 38.462 0.29 0.00 40.20 5.01
4712 6049 9.065798 TCAATTCAAGTTAATGATTGTCTGTCA 57.934 29.630 0.00 0.00 0.00 3.58
4794 6131 1.153086 GGTAGGTCCTGCAGCATGG 60.153 63.158 8.66 0.00 35.86 3.66
4877 6214 3.673902 TCGAACTTGCAGATGGAAATGA 58.326 40.909 0.00 0.00 0.00 2.57
4999 6336 1.438222 GACGTCGCAAAGTTTCGCC 60.438 57.895 0.00 0.00 0.00 5.54
5138 6475 2.807967 TGCAAGGTCAAGAAATGTCTCG 59.192 45.455 0.00 0.00 30.70 4.04
5253 6602 4.399395 TCGCCTGCAGCTCAAGGG 62.399 66.667 8.66 2.71 40.39 3.95
5307 6659 1.079057 GGCGAAAGTGTCCTCTCCC 60.079 63.158 0.00 0.00 0.00 4.30
5371 6723 1.580845 CTTGGAAGGCAGAACCAGCG 61.581 60.000 0.00 0.00 43.14 5.18
5412 6764 2.063979 CCAGTGTCCTCCCGGCATA 61.064 63.158 0.00 0.00 0.00 3.14
5420 6772 0.833834 CCTCCCGGCATAGAGATGGT 60.834 60.000 6.99 0.00 33.26 3.55
5508 6860 0.938008 GCCGGTTCGAAGAATGGATC 59.062 55.000 1.90 0.00 45.90 3.36
5510 6862 2.838736 CCGGTTCGAAGAATGGATCAT 58.161 47.619 0.00 0.00 45.90 2.45
5514 6866 3.209410 GTTCGAAGAATGGATCATGGCT 58.791 45.455 0.00 0.00 45.90 4.75
5648 7000 3.322318 GAGGAGCAGGTGAGGGTGC 62.322 68.421 0.00 0.00 40.17 5.01
5808 7160 3.562635 GCTGGGTGCGTTGTAGAC 58.437 61.111 0.00 0.00 0.00 2.59
5809 7161 1.004918 GCTGGGTGCGTTGTAGACT 60.005 57.895 0.00 0.00 0.00 3.24
5810 7162 0.602905 GCTGGGTGCGTTGTAGACTT 60.603 55.000 0.00 0.00 0.00 3.01
5811 7163 1.148310 CTGGGTGCGTTGTAGACTTG 58.852 55.000 0.00 0.00 0.00 3.16
5812 7164 0.882927 TGGGTGCGTTGTAGACTTGC 60.883 55.000 0.00 0.00 0.00 4.01
5813 7165 0.882927 GGGTGCGTTGTAGACTTGCA 60.883 55.000 0.00 0.00 0.00 4.08
5814 7166 0.512952 GGTGCGTTGTAGACTTGCAG 59.487 55.000 0.00 0.00 36.03 4.41
5822 7174 4.683832 GTTGTAGACTTGCAGTATCGGAT 58.316 43.478 0.00 0.00 0.00 4.18
5827 7179 7.145985 TGTAGACTTGCAGTATCGGATAATTC 58.854 38.462 0.00 0.00 0.00 2.17
5829 7181 5.009710 AGACTTGCAGTATCGGATAATTCGA 59.990 40.000 0.00 0.00 41.04 3.71
5895 7260 8.283708 ACCTAGGCTACTCTTAAATTCTACTCT 58.716 37.037 9.30 0.00 0.00 3.24
5896 7261 9.796180 CCTAGGCTACTCTTAAATTCTACTCTA 57.204 37.037 0.00 0.00 0.00 2.43
5945 7313 2.478539 GCGTGGATCTTGATGCCTTTTC 60.479 50.000 0.00 0.00 0.00 2.29
5949 7317 5.565439 CGTGGATCTTGATGCCTTTTCTTTT 60.565 40.000 0.00 0.00 0.00 2.27
5964 7332 2.661718 TCTTTTTCTTCCGGCAAACCT 58.338 42.857 0.00 0.00 0.00 3.50
5966 7334 2.060050 TTTTCTTCCGGCAAACCTGA 57.940 45.000 0.00 0.00 0.00 3.86
6010 7378 5.185056 TGAATCGTCACCTTCTGAACATCTA 59.815 40.000 0.00 0.00 0.00 1.98
6012 7380 3.119955 TCGTCACCTTCTGAACATCTACG 60.120 47.826 0.00 0.00 0.00 3.51
6047 7416 3.743521 TGATGCTACTTGCTGTGTTCTT 58.256 40.909 0.00 0.00 43.37 2.52
6048 7417 3.748048 TGATGCTACTTGCTGTGTTCTTC 59.252 43.478 0.00 0.00 43.37 2.87
6049 7418 3.192541 TGCTACTTGCTGTGTTCTTCA 57.807 42.857 0.00 0.00 43.37 3.02
6050 7419 3.743521 TGCTACTTGCTGTGTTCTTCAT 58.256 40.909 0.00 0.00 43.37 2.57
6051 7420 4.136796 TGCTACTTGCTGTGTTCTTCATT 58.863 39.130 0.00 0.00 43.37 2.57
6052 7421 4.580167 TGCTACTTGCTGTGTTCTTCATTT 59.420 37.500 0.00 0.00 43.37 2.32
6053 7422 5.067674 TGCTACTTGCTGTGTTCTTCATTTT 59.932 36.000 0.00 0.00 43.37 1.82
6054 7423 5.979517 GCTACTTGCTGTGTTCTTCATTTTT 59.020 36.000 0.00 0.00 38.95 1.94
6055 7424 6.142958 GCTACTTGCTGTGTTCTTCATTTTTC 59.857 38.462 0.00 0.00 38.95 2.29
6056 7425 5.964758 ACTTGCTGTGTTCTTCATTTTTCA 58.035 33.333 0.00 0.00 0.00 2.69
6057 7426 6.576185 ACTTGCTGTGTTCTTCATTTTTCAT 58.424 32.000 0.00 0.00 0.00 2.57
6058 7427 7.043565 ACTTGCTGTGTTCTTCATTTTTCATT 58.956 30.769 0.00 0.00 0.00 2.57
6059 7428 6.831727 TGCTGTGTTCTTCATTTTTCATTG 57.168 33.333 0.00 0.00 0.00 2.82
6060 7429 6.571605 TGCTGTGTTCTTCATTTTTCATTGA 58.428 32.000 0.00 0.00 0.00 2.57
6061 7430 7.040494 TGCTGTGTTCTTCATTTTTCATTGAA 58.960 30.769 0.00 0.00 0.00 2.69
6062 7431 7.548427 TGCTGTGTTCTTCATTTTTCATTGAAA 59.452 29.630 7.74 7.74 31.85 2.69
6063 7432 8.389603 GCTGTGTTCTTCATTTTTCATTGAAAA 58.610 29.630 18.29 18.29 39.36 2.29
6064 7433 9.910511 CTGTGTTCTTCATTTTTCATTGAAAAG 57.089 29.630 20.48 12.70 41.55 2.27
6065 7434 8.881743 TGTGTTCTTCATTTTTCATTGAAAAGG 58.118 29.630 20.48 17.22 41.55 3.11
6066 7435 9.097257 GTGTTCTTCATTTTTCATTGAAAAGGA 57.903 29.630 20.48 18.75 41.55 3.36
6067 7436 9.316730 TGTTCTTCATTTTTCATTGAAAAGGAG 57.683 29.630 20.48 15.34 41.55 3.69
6068 7437 8.768019 GTTCTTCATTTTTCATTGAAAAGGAGG 58.232 33.333 20.48 20.19 41.55 4.30
6069 7438 8.248904 TCTTCATTTTTCATTGAAAAGGAGGA 57.751 30.769 22.29 22.29 41.55 3.71
6070 7439 8.873144 TCTTCATTTTTCATTGAAAAGGAGGAT 58.127 29.630 22.29 13.80 41.55 3.24
6071 7440 8.836268 TTCATTTTTCATTGAAAAGGAGGATG 57.164 30.769 20.48 19.50 41.55 3.51
6072 7441 8.192743 TCATTTTTCATTGAAAAGGAGGATGA 57.807 30.769 21.29 21.29 41.55 2.92
6073 7442 8.090214 TCATTTTTCATTGAAAAGGAGGATGAC 58.910 33.333 21.29 0.00 41.55 3.06
6074 7443 7.601705 TTTTTCATTGAAAAGGAGGATGACT 57.398 32.000 20.48 0.00 41.55 3.41
6075 7444 6.824305 TTTCATTGAAAAGGAGGATGACTC 57.176 37.500 9.36 0.00 38.16 3.36
6076 7445 5.768980 TCATTGAAAAGGAGGATGACTCT 57.231 39.130 0.00 0.00 45.83 3.24
6077 7446 6.874278 TCATTGAAAAGGAGGATGACTCTA 57.126 37.500 0.00 0.00 45.83 2.43
6078 7447 6.882656 TCATTGAAAAGGAGGATGACTCTAG 58.117 40.000 0.00 0.00 45.83 2.43
6079 7448 4.744795 TGAAAAGGAGGATGACTCTAGC 57.255 45.455 0.00 0.00 45.83 3.42
6080 7449 3.452627 TGAAAAGGAGGATGACTCTAGCC 59.547 47.826 0.00 0.00 45.83 3.93
6081 7450 3.413105 AAAGGAGGATGACTCTAGCCT 57.587 47.619 0.00 0.00 45.83 4.58
6082 7451 2.675658 AGGAGGATGACTCTAGCCTC 57.324 55.000 0.00 0.00 45.83 4.70
6083 7452 2.143602 AGGAGGATGACTCTAGCCTCT 58.856 52.381 9.59 0.00 45.83 3.69
6084 7453 2.158475 AGGAGGATGACTCTAGCCTCTG 60.158 54.545 9.59 0.00 45.83 3.35
6085 7454 2.424234 GGAGGATGACTCTAGCCTCTGT 60.424 54.545 9.59 0.00 45.83 3.41
6086 7455 3.181438 GGAGGATGACTCTAGCCTCTGTA 60.181 52.174 9.59 0.00 45.83 2.74
6087 7456 4.508405 GGAGGATGACTCTAGCCTCTGTAT 60.508 50.000 9.59 0.00 45.83 2.29
6088 7457 4.662278 AGGATGACTCTAGCCTCTGTATC 58.338 47.826 0.00 0.00 0.00 2.24
6089 7458 4.105537 AGGATGACTCTAGCCTCTGTATCA 59.894 45.833 0.00 0.00 0.00 2.15
6090 7459 4.458989 GGATGACTCTAGCCTCTGTATCAG 59.541 50.000 0.00 0.00 0.00 2.90
6091 7460 3.826524 TGACTCTAGCCTCTGTATCAGG 58.173 50.000 0.00 0.00 31.51 3.86
6092 7461 3.153919 GACTCTAGCCTCTGTATCAGGG 58.846 54.545 0.00 0.00 31.51 4.45
6093 7462 1.892474 CTCTAGCCTCTGTATCAGGGC 59.108 57.143 15.95 15.95 43.30 5.19
6094 7463 0.600557 CTAGCCTCTGTATCAGGGCG 59.399 60.000 16.95 6.66 45.61 6.13
6095 7464 0.185175 TAGCCTCTGTATCAGGGCGA 59.815 55.000 16.95 12.40 45.61 5.54
6096 7465 0.470833 AGCCTCTGTATCAGGGCGAT 60.471 55.000 16.95 5.18 45.61 4.58
6097 7466 0.320247 GCCTCTGTATCAGGGCGATG 60.320 60.000 11.29 0.00 37.78 3.84
6098 7467 0.320247 CCTCTGTATCAGGGCGATGC 60.320 60.000 0.00 0.00 37.26 3.91
6099 7468 0.390492 CTCTGTATCAGGGCGATGCA 59.610 55.000 0.00 0.00 43.55 3.96
6100 7469 1.001746 CTCTGTATCAGGGCGATGCAT 59.998 52.381 0.00 0.00 44.51 3.96
6101 7470 2.232208 CTCTGTATCAGGGCGATGCATA 59.768 50.000 0.00 0.00 44.51 3.14
6102 7471 2.029020 TCTGTATCAGGGCGATGCATAC 60.029 50.000 0.00 0.00 44.51 2.39
6103 7472 1.691434 TGTATCAGGGCGATGCATACA 59.309 47.619 0.00 0.00 41.25 2.29
6104 7473 2.302733 TGTATCAGGGCGATGCATACAT 59.697 45.455 0.00 0.00 41.25 2.29
6105 7474 5.443075 CTGTATCAGGGCGATGCATACATC 61.443 50.000 0.00 0.00 44.51 3.06
6166 7535 8.004087 ACATCAATAGGTCTGAATCATTTTGG 57.996 34.615 0.00 0.00 0.00 3.28
6167 7536 6.455360 TCAATAGGTCTGAATCATTTTGGC 57.545 37.500 0.00 0.00 0.00 4.52
6168 7537 5.951148 TCAATAGGTCTGAATCATTTTGGCA 59.049 36.000 0.00 0.00 0.00 4.92
6169 7538 6.436847 TCAATAGGTCTGAATCATTTTGGCAA 59.563 34.615 0.00 0.00 0.00 4.52
6170 7539 4.525912 AGGTCTGAATCATTTTGGCAAC 57.474 40.909 0.00 0.00 0.00 4.17
6184 7553 3.159213 TGGCAACATCTGAGGTTGATT 57.841 42.857 31.98 0.00 46.56 2.57
6192 7561 4.292306 ACATCTGAGGTTGATTAAGGGGTT 59.708 41.667 0.00 0.00 0.00 4.11
6193 7562 5.491078 ACATCTGAGGTTGATTAAGGGGTTA 59.509 40.000 0.00 0.00 0.00 2.85
6226 7595 2.976490 GCCTGCCCAGACCTCACAT 61.976 63.158 0.00 0.00 0.00 3.21
6227 7596 1.077930 CCTGCCCAGACCTCACATG 60.078 63.158 0.00 0.00 0.00 3.21
6233 7602 1.004044 CCCAGACCTCACATGAAAGCT 59.996 52.381 0.00 0.00 0.00 3.74
6240 7609 4.147321 ACCTCACATGAAAGCTCAACATT 58.853 39.130 0.00 0.00 34.49 2.71
6249 7618 4.742659 TGAAAGCTCAACATTTAAAACCGC 59.257 37.500 0.00 0.00 0.00 5.68
6252 7621 3.317993 AGCTCAACATTTAAAACCGCAGT 59.682 39.130 0.00 0.00 0.00 4.40
6263 7634 3.710722 CCGCAGTCCTCCCAAGCT 61.711 66.667 0.00 0.00 0.00 3.74
6297 7668 2.033448 GGGCACACATCGGTCCAA 59.967 61.111 0.00 0.00 0.00 3.53
6318 7689 1.374190 CACTCTCAGCAGGCACCTT 59.626 57.895 0.00 0.00 0.00 3.50
6363 7735 3.767131 TGTCATCGTCTTCCACTATCCAA 59.233 43.478 0.00 0.00 0.00 3.53
6384 7756 1.402259 CTTCAGAGCAGGTATCGACGT 59.598 52.381 0.00 0.00 0.00 4.34
6401 7773 2.097825 ACGTATCGACCTTGTTAGGCT 58.902 47.619 0.00 0.00 46.22 4.58
6408 7780 1.798813 GACCTTGTTAGGCTTGTCGTG 59.201 52.381 0.00 0.00 46.22 4.35
6410 7782 1.156736 CTTGTTAGGCTTGTCGTGGG 58.843 55.000 0.00 0.00 0.00 4.61
6442 7815 1.480212 ATCAGACAACGCCACCTCCA 61.480 55.000 0.00 0.00 0.00 3.86
6457 7830 3.036084 CCATACGCGCGTCCATCC 61.036 66.667 41.35 0.00 0.00 3.51
6485 7858 2.016393 CTATCGCCGAGACCCTGCAA 62.016 60.000 0.00 0.00 0.00 4.08
6505 7878 2.430610 GCCATGCCTCCGAGACTCT 61.431 63.158 0.03 0.00 0.00 3.24
6518 7891 3.065510 CCGAGACTCTACGTCATTGATGT 59.934 47.826 15.47 15.47 45.32 3.06
6593 7966 2.929641 TGCACACCTTCAAGAATGACA 58.070 42.857 0.00 0.00 34.61 3.58
6633 8007 4.492160 GAGCGTCGCCGTCATCCA 62.492 66.667 14.86 0.00 36.15 3.41
6636 8010 1.590525 GCGTCGCCGTCATCCAATA 60.591 57.895 5.75 0.00 36.15 1.90
6649 8023 6.655425 CCGTCATCCAATAGACTGATCTAGTA 59.345 42.308 0.00 0.00 40.84 1.82
6658 8032 9.535170 CAATAGACTGATCTAGTATTTCCCCTA 57.465 37.037 0.00 0.00 40.84 3.53
6677 8051 4.508047 CCCTAAAGGTAGCGGATAGAGGTA 60.508 50.000 0.00 0.00 0.00 3.08
6707 8081 0.109597 CCACGACAATGCCTTCAAGC 60.110 55.000 0.00 0.00 0.00 4.01
6716 8090 1.527034 TGCCTTCAAGCAGATGACAC 58.473 50.000 0.00 0.00 38.00 3.67
6717 8091 1.202794 TGCCTTCAAGCAGATGACACA 60.203 47.619 0.00 0.00 38.00 3.72
6718 8092 1.198637 GCCTTCAAGCAGATGACACAC 59.801 52.381 0.00 0.00 0.00 3.82
6719 8093 1.462283 CCTTCAAGCAGATGACACACG 59.538 52.381 0.00 0.00 0.00 4.49
6720 8094 2.407090 CTTCAAGCAGATGACACACGA 58.593 47.619 0.00 0.00 0.00 4.35
6721 8095 1.783284 TCAAGCAGATGACACACGAC 58.217 50.000 0.00 0.00 0.00 4.34
6722 8096 1.068434 TCAAGCAGATGACACACGACA 59.932 47.619 0.00 0.00 0.00 4.35
6723 8097 1.866601 CAAGCAGATGACACACGACAA 59.133 47.619 0.00 0.00 0.00 3.18
6724 8098 2.462456 AGCAGATGACACACGACAAT 57.538 45.000 0.00 0.00 0.00 2.71
6725 8099 2.071540 AGCAGATGACACACGACAATG 58.928 47.619 0.00 0.00 0.00 2.82
6726 8100 1.464687 GCAGATGACACACGACAATGC 60.465 52.381 0.00 0.00 0.00 3.56
6727 8101 1.129251 CAGATGACACACGACAATGCC 59.871 52.381 0.00 0.00 0.00 4.40
6728 8102 1.002430 AGATGACACACGACAATGCCT 59.998 47.619 0.00 0.00 0.00 4.75
6729 8103 1.806542 GATGACACACGACAATGCCTT 59.193 47.619 0.00 0.00 0.00 4.35
6730 8104 1.225855 TGACACACGACAATGCCTTC 58.774 50.000 0.00 0.00 0.00 3.46
6734 8108 0.593128 ACACGACAATGCCTTCAAGC 59.407 50.000 0.00 0.00 0.00 4.01
6780 8154 2.045926 CGGCCTTGGCAACTAGCT 60.046 61.111 14.04 0.00 44.79 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.132834 CAAGTCAGCAACACAACAGCA 59.867 47.619 0.00 0.00 0.00 4.41
102 153 4.451900 AGTCAAGACGACCAAAGTCATTT 58.548 39.130 0.00 0.00 46.69 2.32
131 194 3.195396 ACAAGTGTGAAAACACATGCCTT 59.805 39.130 12.61 3.31 41.38 4.35
193 296 5.888161 AGTTCAGTTCAAGGAAAAGTGTGAT 59.112 36.000 0.00 0.00 0.00 3.06
204 347 4.843220 AAGCAATCAGTTCAGTTCAAGG 57.157 40.909 0.00 0.00 0.00 3.61
243 389 3.221771 TGCCGCTAATAAAGGAATGCAT 58.778 40.909 0.00 0.00 0.00 3.96
266 412 2.265904 AAAGGGCGAAAGGGCGTTC 61.266 57.895 0.00 0.00 46.94 3.95
268 414 2.983592 CAAAGGGCGAAAGGGCGT 60.984 61.111 0.00 0.00 43.46 5.68
269 415 4.419939 GCAAAGGGCGAAAGGGCG 62.420 66.667 0.00 0.00 43.46 6.13
334 480 1.936547 CGTGGGACGTACTCCTAGTAC 59.063 57.143 0.00 7.08 45.71 2.73
335 481 1.743772 GCGTGGGACGTACTCCTAGTA 60.744 57.143 0.00 0.00 44.73 1.82
336 482 1.028868 GCGTGGGACGTACTCCTAGT 61.029 60.000 0.00 0.00 44.73 2.57
337 483 0.747283 AGCGTGGGACGTACTCCTAG 60.747 60.000 0.00 0.00 44.73 3.02
338 484 0.745845 GAGCGTGGGACGTACTCCTA 60.746 60.000 0.00 3.18 44.73 2.94
339 485 2.035312 AGCGTGGGACGTACTCCT 59.965 61.111 0.00 0.00 44.73 3.69
340 486 1.870055 TTGAGCGTGGGACGTACTCC 61.870 60.000 0.00 0.00 44.73 3.85
341 487 0.038892 TTTGAGCGTGGGACGTACTC 60.039 55.000 0.00 0.00 44.73 2.59
342 488 0.038526 CTTTGAGCGTGGGACGTACT 60.039 55.000 0.00 0.00 44.73 2.73
343 489 1.623973 GCTTTGAGCGTGGGACGTAC 61.624 60.000 0.00 0.00 44.73 3.67
344 490 1.373748 GCTTTGAGCGTGGGACGTA 60.374 57.895 0.00 0.00 44.73 3.57
345 491 2.665185 GCTTTGAGCGTGGGACGT 60.665 61.111 0.00 0.00 44.73 4.34
346 492 2.664851 TGCTTTGAGCGTGGGACG 60.665 61.111 0.00 0.00 46.26 4.79
347 493 2.970974 GCTGCTTTGAGCGTGGGAC 61.971 63.158 0.00 0.00 46.26 4.46
348 494 2.669569 GCTGCTTTGAGCGTGGGA 60.670 61.111 0.00 0.00 46.26 4.37
354 500 4.410743 GGGTGCGCTGCTTTGAGC 62.411 66.667 9.73 0.00 42.82 4.26
355 501 2.338015 ATGGGTGCGCTGCTTTGAG 61.338 57.895 9.73 0.00 0.00 3.02
356 502 2.282391 ATGGGTGCGCTGCTTTGA 60.282 55.556 9.73 0.00 0.00 2.69
357 503 2.126228 CATGGGTGCGCTGCTTTG 60.126 61.111 9.73 0.00 0.00 2.77
358 504 4.060038 GCATGGGTGCGCTGCTTT 62.060 61.111 9.73 0.00 42.28 3.51
419 565 0.178992 TGGCTTTTCTCAGGGTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
421 567 0.535102 CGTGGCTTTTCTCAGGGTGT 60.535 55.000 0.00 0.00 0.00 4.16
423 569 1.600916 GCGTGGCTTTTCTCAGGGT 60.601 57.895 0.00 0.00 0.00 4.34
471 617 2.561037 GGTTGCTTTCGTGGGGGTG 61.561 63.158 0.00 0.00 0.00 4.61
472 618 2.203437 GGTTGCTTTCGTGGGGGT 60.203 61.111 0.00 0.00 0.00 4.95
473 619 1.112916 AAAGGTTGCTTTCGTGGGGG 61.113 55.000 0.00 0.00 0.00 5.40
474 620 0.031994 CAAAGGTTGCTTTCGTGGGG 59.968 55.000 0.00 0.00 0.00 4.96
475 621 3.568093 CAAAGGTTGCTTTCGTGGG 57.432 52.632 0.00 0.00 0.00 4.61
485 631 0.813184 ATGAGATGCGGCAAAGGTTG 59.187 50.000 6.82 0.00 0.00 3.77
486 632 1.549203 AATGAGATGCGGCAAAGGTT 58.451 45.000 6.82 0.00 0.00 3.50
487 633 1.474077 GAAATGAGATGCGGCAAAGGT 59.526 47.619 6.82 0.00 0.00 3.50
488 634 1.202336 GGAAATGAGATGCGGCAAAGG 60.202 52.381 6.82 0.00 0.00 3.11
489 635 1.747355 AGGAAATGAGATGCGGCAAAG 59.253 47.619 6.82 0.00 0.00 2.77
490 636 1.745087 GAGGAAATGAGATGCGGCAAA 59.255 47.619 6.82 0.00 0.00 3.68
491 637 1.382522 GAGGAAATGAGATGCGGCAA 58.617 50.000 6.82 0.00 0.00 4.52
492 638 0.464373 GGAGGAAATGAGATGCGGCA 60.464 55.000 4.58 4.58 0.00 5.69
493 639 0.179034 AGGAGGAAATGAGATGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
494 640 2.869636 GCTAGGAGGAAATGAGATGCGG 60.870 54.545 0.00 0.00 0.00 5.69
495 641 2.036992 AGCTAGGAGGAAATGAGATGCG 59.963 50.000 0.00 0.00 0.00 4.73
496 642 3.767902 AGCTAGGAGGAAATGAGATGC 57.232 47.619 0.00 0.00 0.00 3.91
497 643 4.275443 GCAAAGCTAGGAGGAAATGAGATG 59.725 45.833 0.00 0.00 0.00 2.90
498 644 4.165758 AGCAAAGCTAGGAGGAAATGAGAT 59.834 41.667 0.00 0.00 36.99 2.75
499 645 3.521126 AGCAAAGCTAGGAGGAAATGAGA 59.479 43.478 0.00 0.00 36.99 3.27
500 646 3.883669 AGCAAAGCTAGGAGGAAATGAG 58.116 45.455 0.00 0.00 36.99 2.90
501 647 4.307032 AAGCAAAGCTAGGAGGAAATGA 57.693 40.909 0.00 0.00 38.25 2.57
502 648 4.704057 AGAAAGCAAAGCTAGGAGGAAATG 59.296 41.667 0.00 0.00 38.25 2.32
503 649 4.928263 AGAAAGCAAAGCTAGGAGGAAAT 58.072 39.130 0.00 0.00 38.25 2.17
504 650 4.373156 AGAAAGCAAAGCTAGGAGGAAA 57.627 40.909 0.00 0.00 38.25 3.13
505 651 4.373156 AAGAAAGCAAAGCTAGGAGGAA 57.627 40.909 0.00 0.00 38.25 3.36
506 652 4.074970 CAAAGAAAGCAAAGCTAGGAGGA 58.925 43.478 0.00 0.00 38.25 3.71
507 653 3.366781 GCAAAGAAAGCAAAGCTAGGAGG 60.367 47.826 0.00 0.00 38.25 4.30
508 654 3.366781 GGCAAAGAAAGCAAAGCTAGGAG 60.367 47.826 0.00 0.00 38.25 3.69
509 655 2.558359 GGCAAAGAAAGCAAAGCTAGGA 59.442 45.455 0.00 0.00 38.25 2.94
510 656 2.353109 GGGCAAAGAAAGCAAAGCTAGG 60.353 50.000 0.00 0.00 38.25 3.02
511 657 2.353109 GGGGCAAAGAAAGCAAAGCTAG 60.353 50.000 0.00 0.00 38.25 3.42
512 658 1.618343 GGGGCAAAGAAAGCAAAGCTA 59.382 47.619 0.00 0.00 38.25 3.32
513 659 0.394192 GGGGCAAAGAAAGCAAAGCT 59.606 50.000 0.00 0.00 42.56 3.74
516 662 0.387565 GTCGGGGCAAAGAAAGCAAA 59.612 50.000 0.00 0.00 0.00 3.68
519 665 2.561373 CGTCGGGGCAAAGAAAGC 59.439 61.111 0.00 0.00 0.00 3.51
541 687 3.151022 GAGAGACTGGCCTCGGGG 61.151 72.222 3.32 0.00 38.19 5.73
550 696 2.594321 CGAACAGCAAGAGAGAGACTG 58.406 52.381 0.00 0.00 0.00 3.51
551 697 1.543802 CCGAACAGCAAGAGAGAGACT 59.456 52.381 0.00 0.00 0.00 3.24
552 698 1.403514 CCCGAACAGCAAGAGAGAGAC 60.404 57.143 0.00 0.00 0.00 3.36
568 1039 2.738480 CCGTTCCACTGTTCCCGA 59.262 61.111 0.00 0.00 0.00 5.14
747 1230 2.510238 CTCACTGTAGCGCCAGGC 60.510 66.667 16.50 0.00 44.05 4.85
748 1231 2.510238 GCTCACTGTAGCGCCAGG 60.510 66.667 16.50 7.08 36.75 4.45
754 1237 1.585002 CTCGCTCGCTCACTGTAGC 60.585 63.158 0.00 0.00 39.21 3.58
755 1238 1.585002 GCTCGCTCGCTCACTGTAG 60.585 63.158 0.00 0.00 0.00 2.74
756 1239 2.258580 CTGCTCGCTCGCTCACTGTA 62.259 60.000 0.00 0.00 0.00 2.74
757 1240 3.623486 CTGCTCGCTCGCTCACTGT 62.623 63.158 0.00 0.00 0.00 3.55
758 1241 2.879933 CTGCTCGCTCGCTCACTG 60.880 66.667 0.00 0.00 0.00 3.66
759 1242 4.127040 CCTGCTCGCTCGCTCACT 62.127 66.667 0.00 0.00 0.00 3.41
839 1333 5.051409 AGTACTACTAAGGCAGGGAGTAG 57.949 47.826 0.00 10.90 45.41 2.57
849 1343 6.240145 GTCCCATCTAGGAGTACTACTAAGG 58.760 48.000 15.80 15.95 41.22 2.69
920 1417 2.060284 GAAGCAAACAATGAATGCGCA 58.940 42.857 14.96 14.96 44.60 6.09
922 1419 2.091588 GCAGAAGCAAACAATGAATGCG 59.908 45.455 8.72 0.00 44.60 4.73
1010 1513 2.890474 CTCCGCCGCGTTAATGCT 60.890 61.111 17.25 0.00 0.00 3.79
1064 1571 2.842936 ATCCCCATCGGTCGGTCC 60.843 66.667 0.00 0.00 0.00 4.46
1313 1838 2.281484 GCAAGGGGACTCACGCAA 60.281 61.111 0.00 0.00 42.68 4.85
1365 1890 2.558795 CAGGAGACCTCGTTTCAGAAGA 59.441 50.000 0.00 0.00 0.00 2.87
1378 1903 1.201181 CCATCGATCGATCAGGAGACC 59.799 57.143 27.20 0.00 31.62 3.85
1493 2018 2.935201 CAGCAAGATACTGAAGCAGGAC 59.065 50.000 0.00 0.00 37.32 3.85
1494 2019 2.679059 GCAGCAAGATACTGAAGCAGGA 60.679 50.000 0.00 0.00 37.32 3.86
1495 2020 1.669779 GCAGCAAGATACTGAAGCAGG 59.330 52.381 0.00 0.00 37.32 4.85
1515 2040 0.107017 ATGGAAATGGGAGCGACTGG 60.107 55.000 0.00 0.00 0.00 4.00
1602 2174 1.703438 CTGATGCCAACTCTCTGCGC 61.703 60.000 0.00 0.00 0.00 6.09
1603 2175 1.703438 GCTGATGCCAACTCTCTGCG 61.703 60.000 0.00 0.00 0.00 5.18
1604 2176 0.675837 TGCTGATGCCAACTCTCTGC 60.676 55.000 0.00 0.00 38.71 4.26
1605 2177 1.817357 TTGCTGATGCCAACTCTCTG 58.183 50.000 0.00 0.00 38.71 3.35
1606 2178 2.803030 ATTGCTGATGCCAACTCTCT 57.197 45.000 0.00 0.00 38.71 3.10
1607 2179 3.252701 CCATATTGCTGATGCCAACTCTC 59.747 47.826 0.00 0.00 38.71 3.20
1608 2180 3.220110 CCATATTGCTGATGCCAACTCT 58.780 45.455 0.00 0.00 38.71 3.24
1609 2181 2.288030 GCCATATTGCTGATGCCAACTC 60.288 50.000 0.00 0.00 38.71 3.01
1610 2182 1.684983 GCCATATTGCTGATGCCAACT 59.315 47.619 0.00 0.00 38.71 3.16
1611 2183 1.684983 AGCCATATTGCTGATGCCAAC 59.315 47.619 0.00 0.00 40.90 3.77
1612 2184 2.076207 AGCCATATTGCTGATGCCAA 57.924 45.000 0.00 0.00 40.90 4.52
1613 2185 1.958579 GAAGCCATATTGCTGATGCCA 59.041 47.619 1.40 0.00 41.80 4.92
1614 2186 1.068748 CGAAGCCATATTGCTGATGCC 60.069 52.381 1.40 0.00 41.80 4.40
1615 2187 1.068748 CCGAAGCCATATTGCTGATGC 60.069 52.381 1.40 0.00 41.80 3.91
1616 2188 2.225019 GTCCGAAGCCATATTGCTGATG 59.775 50.000 1.40 0.00 41.80 3.07
1617 2189 2.158769 TGTCCGAAGCCATATTGCTGAT 60.159 45.455 1.40 0.00 41.80 2.90
1618 2190 1.209261 TGTCCGAAGCCATATTGCTGA 59.791 47.619 1.40 0.00 41.80 4.26
1619 2191 1.600957 CTGTCCGAAGCCATATTGCTG 59.399 52.381 1.40 0.00 41.80 4.41
1620 2192 1.210478 ACTGTCCGAAGCCATATTGCT 59.790 47.619 0.00 0.00 45.43 3.91
1621 2193 1.599542 GACTGTCCGAAGCCATATTGC 59.400 52.381 0.00 0.00 0.00 3.56
1622 2194 2.905075 TGACTGTCCGAAGCCATATTG 58.095 47.619 5.17 0.00 0.00 1.90
1623 2195 3.627395 TTGACTGTCCGAAGCCATATT 57.373 42.857 5.17 0.00 0.00 1.28
1624 2196 3.627395 TTTGACTGTCCGAAGCCATAT 57.373 42.857 5.17 0.00 0.00 1.78
1625 2197 3.270027 CATTTGACTGTCCGAAGCCATA 58.730 45.455 5.17 0.00 0.00 2.74
1626 2198 2.086869 CATTTGACTGTCCGAAGCCAT 58.913 47.619 5.17 0.00 0.00 4.40
1627 2199 1.202758 ACATTTGACTGTCCGAAGCCA 60.203 47.619 5.17 0.00 0.00 4.75
1628 2200 1.523758 ACATTTGACTGTCCGAAGCC 58.476 50.000 5.17 0.00 0.00 4.35
1629 2201 2.350772 CCAACATTTGACTGTCCGAAGC 60.351 50.000 5.17 0.00 0.00 3.86
1630 2202 3.138304 TCCAACATTTGACTGTCCGAAG 58.862 45.455 5.17 0.00 0.00 3.79
1631 2203 3.138304 CTCCAACATTTGACTGTCCGAA 58.862 45.455 5.17 0.86 0.00 4.30
1632 2204 2.766313 CTCCAACATTTGACTGTCCGA 58.234 47.619 5.17 0.00 0.00 4.55
1633 2205 1.197721 GCTCCAACATTTGACTGTCCG 59.802 52.381 5.17 0.00 0.00 4.79
1634 2206 1.541588 GGCTCCAACATTTGACTGTCC 59.458 52.381 5.17 0.00 0.00 4.02
1635 2207 2.227388 CAGGCTCCAACATTTGACTGTC 59.773 50.000 0.00 0.00 0.00 3.51
1636 2208 2.158623 TCAGGCTCCAACATTTGACTGT 60.159 45.455 0.00 0.00 0.00 3.55
1641 2213 4.219070 TCATCTTTCAGGCTCCAACATTTG 59.781 41.667 0.00 0.00 0.00 2.32
1672 2244 3.181507 CCGAAAACAACGATGCATGAGAT 60.182 43.478 2.46 0.00 0.00 2.75
1673 2245 2.159430 CCGAAAACAACGATGCATGAGA 59.841 45.455 2.46 0.00 0.00 3.27
1684 2258 3.443976 ACATTTCACTGCCGAAAACAAC 58.556 40.909 0.00 0.00 38.33 3.32
1710 2284 2.821969 AGGTGATGTTCATGTTTCAGGC 59.178 45.455 0.00 0.00 0.00 4.85
1720 2294 0.842030 AGCCTGGGAGGTGATGTTCA 60.842 55.000 0.00 0.00 37.80 3.18
1786 2360 1.067565 CAGAGTGAGCTGGAACGCTTA 60.068 52.381 0.00 0.00 38.19 3.09
2325 2914 8.430801 AGATCAGCAACAAAAGTGACTATATC 57.569 34.615 0.00 0.00 0.00 1.63
2326 2915 8.043113 TGAGATCAGCAACAAAAGTGACTATAT 58.957 33.333 0.00 0.00 0.00 0.86
2497 3086 3.365868 GGATATCGCAACAGCAACAACAA 60.366 43.478 0.00 0.00 0.00 2.83
2498 3087 2.161410 GGATATCGCAACAGCAACAACA 59.839 45.455 0.00 0.00 0.00 3.33
2499 3088 2.161410 TGGATATCGCAACAGCAACAAC 59.839 45.455 0.00 0.00 0.00 3.32
2637 3230 3.848272 ATTCCAAATACAACCACAGCG 57.152 42.857 0.00 0.00 0.00 5.18
2638 3231 5.132897 TGAATTCCAAATACAACCACAGC 57.867 39.130 2.27 0.00 0.00 4.40
2701 3295 2.443255 ACAGAAACTTGATGACACCCCT 59.557 45.455 0.00 0.00 0.00 4.79
2795 3395 9.379791 AGAAACTTAATTTAGGTCGGACATAAG 57.620 33.333 14.02 7.78 0.00 1.73
2801 3401 8.370182 ACTAACAGAAACTTAATTTAGGTCGGA 58.630 33.333 0.00 0.00 0.00 4.55
2805 3405 8.929746 GCGTACTAACAGAAACTTAATTTAGGT 58.070 33.333 0.00 0.00 0.00 3.08
2806 3406 9.148104 AGCGTACTAACAGAAACTTAATTTAGG 57.852 33.333 0.00 0.00 0.00 2.69
2809 3409 8.828688 AGAGCGTACTAACAGAAACTTAATTT 57.171 30.769 0.00 0.00 0.00 1.82
2810 3410 8.709646 CAAGAGCGTACTAACAGAAACTTAATT 58.290 33.333 0.00 0.00 0.00 1.40
2811 3411 7.871463 ACAAGAGCGTACTAACAGAAACTTAAT 59.129 33.333 0.00 0.00 0.00 1.40
2812 3412 7.205297 ACAAGAGCGTACTAACAGAAACTTAA 58.795 34.615 0.00 0.00 0.00 1.85
2813 3413 6.742109 ACAAGAGCGTACTAACAGAAACTTA 58.258 36.000 0.00 0.00 0.00 2.24
2814 3414 5.598769 ACAAGAGCGTACTAACAGAAACTT 58.401 37.500 0.00 0.00 0.00 2.66
2815 3415 5.197682 ACAAGAGCGTACTAACAGAAACT 57.802 39.130 0.00 0.00 0.00 2.66
2817 3417 5.353938 ACAACAAGAGCGTACTAACAGAAA 58.646 37.500 0.00 0.00 0.00 2.52
2819 3419 4.037089 TGACAACAAGAGCGTACTAACAGA 59.963 41.667 0.00 0.00 0.00 3.41
2820 3420 4.295870 TGACAACAAGAGCGTACTAACAG 58.704 43.478 0.00 0.00 0.00 3.16
2821 3421 4.310357 TGACAACAAGAGCGTACTAACA 57.690 40.909 0.00 0.00 0.00 2.41
2822 3422 5.840940 AATGACAACAAGAGCGTACTAAC 57.159 39.130 0.00 0.00 0.00 2.34
2823 3423 6.220930 AGAAATGACAACAAGAGCGTACTAA 58.779 36.000 0.00 0.00 0.00 2.24
2824 3424 5.779922 AGAAATGACAACAAGAGCGTACTA 58.220 37.500 0.00 0.00 0.00 1.82
2825 3425 4.632153 AGAAATGACAACAAGAGCGTACT 58.368 39.130 0.00 0.00 0.00 2.73
2826 3426 4.447724 TGAGAAATGACAACAAGAGCGTAC 59.552 41.667 0.00 0.00 0.00 3.67
2849 3449 3.326946 AGCTCACCTCTCACCTATCAT 57.673 47.619 0.00 0.00 0.00 2.45
2858 3458 1.552792 ACCAAAGCTAGCTCACCTCTC 59.447 52.381 19.65 0.00 0.00 3.20
2859 3459 1.650528 ACCAAAGCTAGCTCACCTCT 58.349 50.000 19.65 0.00 0.00 3.69
2860 3460 2.481289 AACCAAAGCTAGCTCACCTC 57.519 50.000 19.65 0.00 0.00 3.85
2861 3461 2.959465 AAACCAAAGCTAGCTCACCT 57.041 45.000 19.65 0.00 0.00 4.00
2862 3462 5.644977 AATAAAACCAAAGCTAGCTCACC 57.355 39.130 19.65 0.00 0.00 4.02
2863 3463 9.290483 GATAAAATAAAACCAAAGCTAGCTCAC 57.710 33.333 19.65 0.00 0.00 3.51
2864 3464 9.019656 TGATAAAATAAAACCAAAGCTAGCTCA 57.980 29.630 19.65 2.33 0.00 4.26
2865 3465 9.508567 CTGATAAAATAAAACCAAAGCTAGCTC 57.491 33.333 19.65 0.00 0.00 4.09
2907 3507 4.082625 TCACCAAACGCGACTAGAAATCTA 60.083 41.667 15.93 0.00 0.00 1.98
2909 3509 2.991190 TCACCAAACGCGACTAGAAATC 59.009 45.455 15.93 0.00 0.00 2.17
2910 3510 2.993899 CTCACCAAACGCGACTAGAAAT 59.006 45.455 15.93 0.00 0.00 2.17
3171 3784 2.284625 ACTGCATCCCCGGAGACA 60.285 61.111 0.73 0.00 0.00 3.41
3280 3897 0.035152 ACCATCATCGCCTCTGCAAA 60.035 50.000 0.00 0.00 37.32 3.68
3281 3898 0.745486 CACCATCATCGCCTCTGCAA 60.745 55.000 0.00 0.00 37.32 4.08
3282 3899 1.153309 CACCATCATCGCCTCTGCA 60.153 57.895 0.00 0.00 37.32 4.41
3283 3900 0.879400 CTCACCATCATCGCCTCTGC 60.879 60.000 0.00 0.00 0.00 4.26
3302 3919 2.429610 TCTCCGTACACCCAATCTTAGC 59.570 50.000 0.00 0.00 0.00 3.09
3556 4173 3.365220 GCGTAGTAAAGCACAAGACTGAG 59.635 47.826 0.00 0.00 0.00 3.35
3646 4263 4.031418 TGGCACAATAAATTCTGATGCG 57.969 40.909 0.00 0.00 31.92 4.73
3736 4353 3.945921 ACCTCTCATTTGCATCATCACTG 59.054 43.478 0.00 0.00 0.00 3.66
3959 4816 8.260270 TGACAGTCAATGAACATAGAAATGAG 57.740 34.615 0.00 0.00 36.54 2.90
4028 4888 3.125316 CACTAAGAGTTGGAATTCCGCAC 59.875 47.826 19.57 17.47 39.43 5.34
4031 4891 6.371548 TCATTTCACTAAGAGTTGGAATTCCG 59.628 38.462 19.57 5.19 39.43 4.30
4101 4961 6.366332 GCACTCAGTCGATTTTAGAAAGAGAA 59.634 38.462 0.00 0.00 0.00 2.87
4116 4976 2.140065 TCAGAAAGTGCACTCAGTCG 57.860 50.000 21.95 13.32 0.00 4.18
4142 5002 5.024118 ACTACCTGCTCCAAGTACACTATT 58.976 41.667 0.00 0.00 0.00 1.73
4157 5023 9.542462 TTTGTTCACTATGATATAACTACCTGC 57.458 33.333 0.00 0.00 0.00 4.85
4186 5052 5.242795 AGTTATGCACCCTATACCCAATC 57.757 43.478 0.00 0.00 0.00 2.67
4279 5145 1.399791 CAAGATCCGGCTTTTGAGAGC 59.600 52.381 2.52 0.00 41.96 4.09
4282 5148 5.567138 AAATACAAGATCCGGCTTTTGAG 57.433 39.130 14.79 0.00 0.00 3.02
4285 5151 6.827586 TTGTAAATACAAGATCCGGCTTTT 57.172 33.333 0.00 0.00 40.93 2.27
4388 5402 1.818674 GGCAACCCATCACCTAAGTTG 59.181 52.381 0.00 0.00 40.55 3.16
4445 5459 7.615582 TCAGGTCAATGATGTTATGACTTTC 57.384 36.000 5.27 0.00 42.36 2.62
4474 5488 9.981460 AGTTCCTAAAAGTGATGGATATTTTCT 57.019 29.630 0.00 0.00 0.00 2.52
4499 5513 8.385898 TGTGGTTATACTTTACAAACAGGAAG 57.614 34.615 0.00 0.00 0.00 3.46
4504 5518 8.209584 TGTACCTGTGGTTATACTTTACAAACA 58.790 33.333 0.00 0.00 37.09 2.83
4560 5894 3.822735 TCACTTCAGCAGAAATTTGAGGG 59.177 43.478 0.00 0.00 32.35 4.30
4677 6014 7.961351 TCATTAACTTGAATTGAACCACCAAT 58.039 30.769 0.00 0.00 38.30 3.16
4699 6036 3.054582 ACTGGATGCTGACAGACAATCAT 60.055 43.478 6.65 0.00 38.09 2.45
4712 6049 0.459237 CTCGCTTCGAACTGGATGCT 60.459 55.000 0.00 0.00 34.74 3.79
4775 6112 1.603842 CATGCTGCAGGACCTACCA 59.396 57.895 17.12 2.85 42.04 3.25
4794 6131 6.093219 ACATGTATCAAAACAGATGTCTGAGC 59.907 38.462 16.41 0.00 46.59 4.26
4856 6193 3.673902 TCATTTCCATCTGCAAGTTCGA 58.326 40.909 0.00 0.00 33.76 3.71
4858 6195 7.287050 GAAAATCATTTCCATCTGCAAGTTC 57.713 36.000 0.00 0.00 39.23 3.01
4888 6225 0.537371 AAGCTTCCTGTTTCCACCGG 60.537 55.000 0.00 0.00 0.00 5.28
4973 6310 1.557443 CTTTGCGACGTCTGGTGACC 61.557 60.000 14.70 0.00 39.94 4.02
4980 6317 1.563173 GCGAAACTTTGCGACGTCT 59.437 52.632 14.70 0.00 0.00 4.18
5025 6362 1.103398 GCATGTAGCTCCCCGCATTT 61.103 55.000 0.00 0.00 42.61 2.32
5032 6369 2.590007 CTGCGGCATGTAGCTCCC 60.590 66.667 1.75 0.00 44.79 4.30
5253 6602 0.175760 TGAACTGCCCGAGAGCATAC 59.824 55.000 0.00 0.00 43.09 2.39
5307 6659 1.186200 TGAACATCAGGACGGAGGAG 58.814 55.000 0.00 0.00 0.00 3.69
5371 6723 1.661821 CATACGCGCCTCTGTAGCC 60.662 63.158 5.73 0.00 0.00 3.93
5412 6764 0.396417 CCGTCTCCCTCACCATCTCT 60.396 60.000 0.00 0.00 0.00 3.10
5420 6772 2.684104 CCTCCTCCGTCTCCCTCA 59.316 66.667 0.00 0.00 0.00 3.86
5508 6860 2.892425 GCCGGAGTCGAAGCCATG 60.892 66.667 5.05 0.00 39.00 3.66
5648 7000 2.045926 CGTCCCCTTCCTTGGCAG 60.046 66.667 0.00 0.00 0.00 4.85
5669 7021 1.153489 CACTCCACCGCCTCATCAG 60.153 63.158 0.00 0.00 0.00 2.90
5772 7124 1.460504 CTGAGCAGCACCATCACATT 58.539 50.000 0.00 0.00 0.00 2.71
5795 7147 0.512952 CTGCAAGTCTACAACGCACC 59.487 55.000 0.00 0.00 0.00 5.01
5807 7159 5.784177 ATCGAATTATCCGATACTGCAAGT 58.216 37.500 0.00 0.00 43.93 3.16
5808 7160 6.712241 AATCGAATTATCCGATACTGCAAG 57.288 37.500 1.44 0.00 44.85 4.01
5809 7161 6.147164 GGAAATCGAATTATCCGATACTGCAA 59.853 38.462 1.44 0.00 44.85 4.08
5810 7162 5.637810 GGAAATCGAATTATCCGATACTGCA 59.362 40.000 1.44 0.00 44.85 4.41
5811 7163 6.095947 GGAAATCGAATTATCCGATACTGC 57.904 41.667 1.44 0.00 44.85 4.40
5822 7174 5.701750 TCTTCAACCAACGGAAATCGAATTA 59.298 36.000 0.00 0.00 42.43 1.40
5827 7179 2.546368 TGTCTTCAACCAACGGAAATCG 59.454 45.455 0.00 0.00 45.88 3.34
5829 7181 3.564225 GTCTGTCTTCAACCAACGGAAAT 59.436 43.478 0.00 0.00 30.50 2.17
5895 7260 8.198109 GTGAATGCCAAGTACTAGAAGATTCTA 58.802 37.037 0.00 2.49 38.70 2.10
5896 7261 7.044798 GTGAATGCCAAGTACTAGAAGATTCT 58.955 38.462 0.00 0.07 41.24 2.40
5897 7262 7.044798 AGTGAATGCCAAGTACTAGAAGATTC 58.955 38.462 0.00 2.16 0.00 2.52
5898 7263 6.951971 AGTGAATGCCAAGTACTAGAAGATT 58.048 36.000 0.00 0.00 0.00 2.40
5899 7264 6.552445 AGTGAATGCCAAGTACTAGAAGAT 57.448 37.500 0.00 0.00 0.00 2.40
5900 7265 6.166279 CAAGTGAATGCCAAGTACTAGAAGA 58.834 40.000 0.00 0.00 0.00 2.87
5901 7266 5.163814 GCAAGTGAATGCCAAGTACTAGAAG 60.164 44.000 0.00 0.00 40.49 2.85
5902 7267 4.695455 GCAAGTGAATGCCAAGTACTAGAA 59.305 41.667 0.00 0.00 40.49 2.10
5903 7268 4.253685 GCAAGTGAATGCCAAGTACTAGA 58.746 43.478 0.00 0.00 40.49 2.43
5904 7269 3.062639 CGCAAGTGAATGCCAAGTACTAG 59.937 47.826 0.00 0.00 43.47 2.57
5905 7270 3.000041 CGCAAGTGAATGCCAAGTACTA 59.000 45.455 0.00 0.00 43.47 1.82
5906 7271 1.806542 CGCAAGTGAATGCCAAGTACT 59.193 47.619 0.00 0.00 43.47 2.73
5907 7272 2.247311 CGCAAGTGAATGCCAAGTAC 57.753 50.000 0.00 0.00 43.47 2.73
5945 7313 2.360801 TCAGGTTTGCCGGAAGAAAAAG 59.639 45.455 5.05 0.00 36.05 2.27
5949 7317 1.533625 CATCAGGTTTGCCGGAAGAA 58.466 50.000 5.05 0.00 42.06 2.52
6012 7380 1.639298 GCATCAGGTTCCACGCTCAC 61.639 60.000 0.00 0.00 0.00 3.51
6047 7416 8.090214 GTCATCCTCCTTTTCAATGAAAAATGA 58.910 33.333 20.15 20.15 40.34 2.57
6048 7417 8.092687 AGTCATCCTCCTTTTCAATGAAAAATG 58.907 33.333 19.95 18.50 40.34 2.32
6049 7418 8.198807 AGTCATCCTCCTTTTCAATGAAAAAT 57.801 30.769 19.95 9.13 40.34 1.82
6050 7419 7.506938 AGAGTCATCCTCCTTTTCAATGAAAAA 59.493 33.333 19.95 7.31 41.47 1.94
6051 7420 7.006509 AGAGTCATCCTCCTTTTCAATGAAAA 58.993 34.615 18.68 18.68 41.47 2.29
6052 7421 6.546484 AGAGTCATCCTCCTTTTCAATGAAA 58.454 36.000 4.03 4.03 41.47 2.69
6053 7422 6.131972 AGAGTCATCCTCCTTTTCAATGAA 57.868 37.500 0.00 0.00 41.47 2.57
6054 7423 5.768980 AGAGTCATCCTCCTTTTCAATGA 57.231 39.130 0.00 0.00 41.47 2.57
6055 7424 5.526846 GCTAGAGTCATCCTCCTTTTCAATG 59.473 44.000 0.00 0.00 41.47 2.82
6056 7425 5.397334 GGCTAGAGTCATCCTCCTTTTCAAT 60.397 44.000 0.00 0.00 41.47 2.57
6057 7426 4.080863 GGCTAGAGTCATCCTCCTTTTCAA 60.081 45.833 0.00 0.00 41.47 2.69
6058 7427 3.452627 GGCTAGAGTCATCCTCCTTTTCA 59.547 47.826 0.00 0.00 41.47 2.69
6059 7428 3.709141 AGGCTAGAGTCATCCTCCTTTTC 59.291 47.826 0.00 0.00 41.47 2.29
6060 7429 3.709141 GAGGCTAGAGTCATCCTCCTTTT 59.291 47.826 11.96 0.00 41.47 2.27
6061 7430 3.052186 AGAGGCTAGAGTCATCCTCCTTT 60.052 47.826 16.81 2.40 44.67 3.11
6062 7431 2.517980 AGAGGCTAGAGTCATCCTCCTT 59.482 50.000 16.81 2.94 44.67 3.36
6063 7432 2.143602 AGAGGCTAGAGTCATCCTCCT 58.856 52.381 16.81 5.71 44.67 3.69
6064 7433 2.238521 CAGAGGCTAGAGTCATCCTCC 58.761 57.143 16.81 1.65 44.67 4.30
6065 7434 2.944129 ACAGAGGCTAGAGTCATCCTC 58.056 52.381 14.10 14.10 44.09 3.71
6066 7435 4.105537 TGATACAGAGGCTAGAGTCATCCT 59.894 45.833 0.00 0.00 0.00 3.24
6067 7436 4.402829 TGATACAGAGGCTAGAGTCATCC 58.597 47.826 0.00 0.00 0.00 3.51
6068 7437 4.458989 CCTGATACAGAGGCTAGAGTCATC 59.541 50.000 0.00 0.00 32.44 2.92
6069 7438 4.406456 CCTGATACAGAGGCTAGAGTCAT 58.594 47.826 0.00 0.00 32.44 3.06
6070 7439 3.435746 CCCTGATACAGAGGCTAGAGTCA 60.436 52.174 0.00 0.00 32.44 3.41
6071 7440 3.153919 CCCTGATACAGAGGCTAGAGTC 58.846 54.545 0.00 0.00 32.44 3.36
6072 7441 2.754867 GCCCTGATACAGAGGCTAGAGT 60.755 54.545 17.42 0.00 41.35 3.24
6073 7442 1.892474 GCCCTGATACAGAGGCTAGAG 59.108 57.143 17.42 0.00 41.35 2.43
6074 7443 1.819697 CGCCCTGATACAGAGGCTAGA 60.820 57.143 20.10 0.00 41.92 2.43
6075 7444 0.600557 CGCCCTGATACAGAGGCTAG 59.399 60.000 20.10 9.12 41.92 3.42
6076 7445 0.185175 TCGCCCTGATACAGAGGCTA 59.815 55.000 20.10 12.21 41.92 3.93
6077 7446 0.470833 ATCGCCCTGATACAGAGGCT 60.471 55.000 20.10 0.00 41.92 4.58
6078 7447 0.320247 CATCGCCCTGATACAGAGGC 60.320 60.000 15.82 15.82 41.24 4.70
6079 7448 0.320247 GCATCGCCCTGATACAGAGG 60.320 60.000 0.00 0.00 34.83 3.69
6080 7449 0.390492 TGCATCGCCCTGATACAGAG 59.610 55.000 0.00 0.00 34.83 3.35
6081 7450 1.051008 ATGCATCGCCCTGATACAGA 58.949 50.000 0.00 0.00 33.88 3.41
6082 7451 2.289010 TGTATGCATCGCCCTGATACAG 60.289 50.000 0.19 0.00 33.88 2.74
6083 7452 1.691434 TGTATGCATCGCCCTGATACA 59.309 47.619 0.19 0.00 34.87 2.29
6084 7453 2.455674 TGTATGCATCGCCCTGATAC 57.544 50.000 0.19 0.00 34.83 2.24
6085 7454 3.251479 GATGTATGCATCGCCCTGATA 57.749 47.619 0.19 0.00 41.60 2.15
6086 7455 2.105006 GATGTATGCATCGCCCTGAT 57.895 50.000 0.19 0.00 41.60 2.90
6087 7456 3.612517 GATGTATGCATCGCCCTGA 57.387 52.632 0.19 0.00 41.60 3.86
6140 7509 9.123902 CCAAAATGATTCAGACCTATTGATGTA 57.876 33.333 0.00 0.00 0.00 2.29
6141 7510 7.417116 GCCAAAATGATTCAGACCTATTGATGT 60.417 37.037 0.00 0.00 0.00 3.06
6142 7511 6.921857 GCCAAAATGATTCAGACCTATTGATG 59.078 38.462 0.00 0.00 0.00 3.07
6143 7512 6.608405 TGCCAAAATGATTCAGACCTATTGAT 59.392 34.615 0.00 0.00 0.00 2.57
6144 7513 5.951148 TGCCAAAATGATTCAGACCTATTGA 59.049 36.000 0.00 0.00 0.00 2.57
6145 7514 6.211587 TGCCAAAATGATTCAGACCTATTG 57.788 37.500 0.00 0.00 0.00 1.90
6146 7515 6.211184 TGTTGCCAAAATGATTCAGACCTATT 59.789 34.615 0.00 0.00 0.00 1.73
6147 7516 5.716228 TGTTGCCAAAATGATTCAGACCTAT 59.284 36.000 0.00 0.00 0.00 2.57
6148 7517 5.076182 TGTTGCCAAAATGATTCAGACCTA 58.924 37.500 0.00 0.00 0.00 3.08
6149 7518 3.896888 TGTTGCCAAAATGATTCAGACCT 59.103 39.130 0.00 0.00 0.00 3.85
6150 7519 4.255833 TGTTGCCAAAATGATTCAGACC 57.744 40.909 0.00 0.00 0.00 3.85
6151 7520 5.575606 CAGATGTTGCCAAAATGATTCAGAC 59.424 40.000 0.00 0.00 0.00 3.51
6152 7521 5.477637 TCAGATGTTGCCAAAATGATTCAGA 59.522 36.000 0.00 0.00 0.00 3.27
6153 7522 5.716094 TCAGATGTTGCCAAAATGATTCAG 58.284 37.500 0.00 0.00 0.00 3.02
6154 7523 5.336929 CCTCAGATGTTGCCAAAATGATTCA 60.337 40.000 0.00 0.00 0.00 2.57
6155 7524 5.107133 CCTCAGATGTTGCCAAAATGATTC 58.893 41.667 0.00 0.00 0.00 2.52
6156 7525 4.529377 ACCTCAGATGTTGCCAAAATGATT 59.471 37.500 0.00 0.00 0.00 2.57
6157 7526 4.091549 ACCTCAGATGTTGCCAAAATGAT 58.908 39.130 0.00 0.00 0.00 2.45
6158 7527 3.499338 ACCTCAGATGTTGCCAAAATGA 58.501 40.909 0.00 0.00 0.00 2.57
6159 7528 3.947910 ACCTCAGATGTTGCCAAAATG 57.052 42.857 0.00 0.00 0.00 2.32
6160 7529 3.896888 TCAACCTCAGATGTTGCCAAAAT 59.103 39.130 12.48 0.00 42.17 1.82
6161 7530 3.295093 TCAACCTCAGATGTTGCCAAAA 58.705 40.909 12.48 0.00 42.17 2.44
6162 7531 2.942804 TCAACCTCAGATGTTGCCAAA 58.057 42.857 12.48 0.00 42.17 3.28
6163 7532 2.655090 TCAACCTCAGATGTTGCCAA 57.345 45.000 12.48 0.00 42.17 4.52
6164 7533 2.885135 ATCAACCTCAGATGTTGCCA 57.115 45.000 12.48 0.00 42.17 4.92
6165 7534 4.096984 CCTTAATCAACCTCAGATGTTGCC 59.903 45.833 12.48 0.00 42.17 4.52
6166 7535 4.096984 CCCTTAATCAACCTCAGATGTTGC 59.903 45.833 12.48 0.00 42.17 4.17
6167 7536 4.641989 CCCCTTAATCAACCTCAGATGTTG 59.358 45.833 11.35 11.35 43.46 3.33
6168 7537 4.292306 ACCCCTTAATCAACCTCAGATGTT 59.708 41.667 0.00 0.00 0.00 2.71
6169 7538 3.852578 ACCCCTTAATCAACCTCAGATGT 59.147 43.478 0.00 0.00 0.00 3.06
6170 7539 4.510167 ACCCCTTAATCAACCTCAGATG 57.490 45.455 0.00 0.00 0.00 2.90
6171 7540 5.731678 ACTAACCCCTTAATCAACCTCAGAT 59.268 40.000 0.00 0.00 0.00 2.90
6172 7541 5.098663 ACTAACCCCTTAATCAACCTCAGA 58.901 41.667 0.00 0.00 0.00 3.27
6173 7542 5.437191 ACTAACCCCTTAATCAACCTCAG 57.563 43.478 0.00 0.00 0.00 3.35
6174 7543 7.037153 ACAATACTAACCCCTTAATCAACCTCA 60.037 37.037 0.00 0.00 0.00 3.86
6175 7544 7.344134 ACAATACTAACCCCTTAATCAACCTC 58.656 38.462 0.00 0.00 0.00 3.85
6176 7545 7.280044 ACAATACTAACCCCTTAATCAACCT 57.720 36.000 0.00 0.00 0.00 3.50
6177 7546 6.544931 GGACAATACTAACCCCTTAATCAACC 59.455 42.308 0.00 0.00 0.00 3.77
6184 7553 3.457012 GCCTGGACAATACTAACCCCTTA 59.543 47.826 0.00 0.00 0.00 2.69
6192 7561 0.689745 AGGCGGCCTGGACAATACTA 60.690 55.000 23.19 0.00 29.57 1.82
6193 7562 1.995626 AGGCGGCCTGGACAATACT 60.996 57.895 23.19 0.00 29.57 2.12
6226 7595 4.742659 GCGGTTTTAAATGTTGAGCTTTCA 59.257 37.500 0.00 0.00 0.00 2.69
6227 7596 4.742659 TGCGGTTTTAAATGTTGAGCTTTC 59.257 37.500 0.00 0.00 0.00 2.62
6233 7602 3.886505 AGGACTGCGGTTTTAAATGTTGA 59.113 39.130 0.00 0.00 0.00 3.18
6240 7609 0.766131 TGGGAGGACTGCGGTTTTAA 59.234 50.000 0.00 0.00 0.00 1.52
6249 7618 0.323178 ATTGCAGCTTGGGAGGACTG 60.323 55.000 0.00 0.00 0.00 3.51
6252 7621 1.252904 GCAATTGCAGCTTGGGAGGA 61.253 55.000 25.36 0.00 41.59 3.71
6263 7634 2.676121 CCAGACCCGGCAATTGCA 60.676 61.111 30.32 0.00 44.36 4.08
6297 7668 3.619767 TGCCTGCTGAGAGTGCGT 61.620 61.111 0.00 0.00 0.00 5.24
6343 7714 4.023980 AGTTGGATAGTGGAAGACGATGA 58.976 43.478 0.00 0.00 0.00 2.92
6363 7735 1.402259 CGTCGATACCTGCTCTGAAGT 59.598 52.381 0.00 0.00 0.00 3.01
6384 7756 4.119442 GACAAGCCTAACAAGGTCGATA 57.881 45.455 0.00 0.00 0.00 2.92
6410 7782 3.490759 CTGATGTCGTGGTGGCGC 61.491 66.667 0.00 0.00 0.00 6.53
6424 7796 1.480212 ATGGAGGTGGCGTTGTCTGA 61.480 55.000 0.00 0.00 0.00 3.27
6442 7815 2.335369 GAGGATGGACGCGCGTAT 59.665 61.111 37.91 27.06 0.00 3.06
6457 7830 0.242286 CTCGGCGATAGATGGGTGAG 59.758 60.000 11.27 0.00 39.76 3.51
6462 7835 0.896019 AGGGTCTCGGCGATAGATGG 60.896 60.000 11.27 0.00 39.76 3.51
6485 7858 2.037620 GAGTCTCGGAGGCATGGCAT 62.038 60.000 22.64 6.48 0.00 4.40
6505 7878 4.815269 TCATGTGACACATCAATGACGTA 58.185 39.130 18.27 0.00 36.53 3.57
6518 7891 1.225855 GAGCGGTGTTTCATGTGACA 58.774 50.000 0.00 0.00 0.00 3.58
6561 7934 1.375908 GTGTGCATTGGCTCGAGGA 60.376 57.895 15.58 0.00 41.91 3.71
6636 8010 7.511028 CCTTTAGGGGAAATACTAGATCAGTCT 59.489 40.741 0.00 0.00 38.80 3.24
6658 8032 3.833070 CCATACCTCTATCCGCTACCTTT 59.167 47.826 0.00 0.00 0.00 3.11
6659 8033 3.075582 TCCATACCTCTATCCGCTACCTT 59.924 47.826 0.00 0.00 0.00 3.50
6707 8081 1.129251 GGCATTGTCGTGTGTCATCTG 59.871 52.381 0.00 0.00 0.00 2.90
6708 8082 1.002430 AGGCATTGTCGTGTGTCATCT 59.998 47.619 0.00 0.00 0.00 2.90
6709 8083 1.442769 AGGCATTGTCGTGTGTCATC 58.557 50.000 0.00 0.00 0.00 2.92
6710 8084 1.806542 GAAGGCATTGTCGTGTGTCAT 59.193 47.619 0.00 0.00 0.00 3.06
6711 8085 1.225855 GAAGGCATTGTCGTGTGTCA 58.774 50.000 0.00 0.00 0.00 3.58
6712 8086 1.225855 TGAAGGCATTGTCGTGTGTC 58.774 50.000 0.00 0.00 0.00 3.67
6713 8087 1.603802 CTTGAAGGCATTGTCGTGTGT 59.396 47.619 0.00 0.00 0.00 3.72
6714 8088 1.664016 GCTTGAAGGCATTGTCGTGTG 60.664 52.381 0.00 0.00 0.00 3.82
6715 8089 0.593128 GCTTGAAGGCATTGTCGTGT 59.407 50.000 0.00 0.00 0.00 4.49
6716 8090 0.592637 TGCTTGAAGGCATTGTCGTG 59.407 50.000 0.00 0.00 37.29 4.35
6717 8091 0.877071 CTGCTTGAAGGCATTGTCGT 59.123 50.000 0.00 0.00 41.63 4.34
6718 8092 1.159285 TCTGCTTGAAGGCATTGTCG 58.841 50.000 0.00 0.00 41.63 4.35
6719 8093 2.751259 TCATCTGCTTGAAGGCATTGTC 59.249 45.455 0.00 0.00 41.63 3.18
6720 8094 2.490903 GTCATCTGCTTGAAGGCATTGT 59.509 45.455 0.00 0.00 41.63 2.71
6721 8095 2.490509 TGTCATCTGCTTGAAGGCATTG 59.509 45.455 0.00 0.00 41.63 2.82
6722 8096 2.490903 GTGTCATCTGCTTGAAGGCATT 59.509 45.455 0.00 0.00 41.63 3.56
6723 8097 2.089980 GTGTCATCTGCTTGAAGGCAT 58.910 47.619 0.00 0.00 41.63 4.40
6724 8098 1.202794 TGTGTCATCTGCTTGAAGGCA 60.203 47.619 0.00 0.00 40.15 4.75
6725 8099 1.467734 CTGTGTCATCTGCTTGAAGGC 59.532 52.381 0.00 0.00 0.00 4.35
6726 8100 3.049708 TCTGTGTCATCTGCTTGAAGG 57.950 47.619 0.00 0.00 0.00 3.46
6727 8101 4.313282 TCTTCTGTGTCATCTGCTTGAAG 58.687 43.478 0.00 0.00 0.00 3.02
6728 8102 4.313282 CTCTTCTGTGTCATCTGCTTGAA 58.687 43.478 0.00 0.00 0.00 2.69
6729 8103 3.863780 GCTCTTCTGTGTCATCTGCTTGA 60.864 47.826 0.00 0.00 0.00 3.02
6730 8104 2.415857 GCTCTTCTGTGTCATCTGCTTG 59.584 50.000 0.00 0.00 0.00 4.01
6734 8108 0.997932 GCGCTCTTCTGTGTCATCTG 59.002 55.000 0.00 0.00 0.00 2.90
6735 8109 0.108424 GGCGCTCTTCTGTGTCATCT 60.108 55.000 7.64 0.00 0.00 2.90
6780 8154 1.140052 TCGGTGAAAACCTTGCTCTCA 59.860 47.619 0.00 0.00 0.00 3.27
6800 8175 0.173708 GGAGGTTCGTCGAGCAGATT 59.826 55.000 11.35 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.