Multiple sequence alignment - TraesCS1D01G337300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G337300 chr1D 100.000 3654 0 0 1 3654 427038116 427041769 0.000000e+00 6748.0
1 TraesCS1D01G337300 chr1D 79.110 1618 265 50 995 2587 332413111 332411542 0.000000e+00 1048.0
2 TraesCS1D01G337300 chr1D 92.551 537 25 5 3 529 473348877 473349408 0.000000e+00 756.0
3 TraesCS1D01G337300 chr1D 80.611 949 164 11 991 1935 426978313 426979245 0.000000e+00 715.0
4 TraesCS1D01G337300 chr1D 80.794 630 109 7 991 1620 426987218 426987835 1.970000e-132 483.0
5 TraesCS1D01G337300 chr1D 80.134 599 107 9 2030 2621 426932790 426933383 1.560000e-118 436.0
6 TraesCS1D01G337300 chr1D 79.577 284 44 8 991 1273 426930931 426931201 1.340000e-44 191.0
7 TraesCS1D01G337300 chr1A 93.546 1255 60 7 730 1967 522189380 522190630 0.000000e+00 1849.0
8 TraesCS1D01G337300 chr1A 94.981 797 29 5 1949 2739 522190637 522191428 0.000000e+00 1240.0
9 TraesCS1D01G337300 chr1A 92.720 522 28 2 3 514 354831094 354830573 0.000000e+00 745.0
10 TraesCS1D01G337300 chr1A 80.127 946 146 22 995 1934 430189979 430189070 0.000000e+00 667.0
11 TraesCS1D01G337300 chr1A 79.967 599 109 9 2030 2621 521978748 521979342 7.250000e-117 431.0
12 TraesCS1D01G337300 chr1A 98.718 78 1 0 625 702 522189302 522189379 4.920000e-29 139.0
13 TraesCS1D01G337300 chr5D 98.626 655 9 0 3000 3654 323850391 323851045 0.000000e+00 1160.0
14 TraesCS1D01G337300 chr5D 92.896 549 27 4 3 541 260843321 260842775 0.000000e+00 787.0
15 TraesCS1D01G337300 chr5D 96.310 271 8 2 2731 3000 323850088 323850357 9.310000e-121 444.0
16 TraesCS1D01G337300 chr2B 89.239 920 88 9 2737 3654 412175972 412176882 0.000000e+00 1140.0
17 TraesCS1D01G337300 chrUn 97.557 655 13 1 3000 3654 97777154 97776503 0.000000e+00 1118.0
18 TraesCS1D01G337300 chrUn 80.401 699 116 16 991 1686 371289730 371289050 2.520000e-141 512.0
19 TraesCS1D01G337300 chrUn 80.570 597 109 6 2030 2621 374061259 374061853 1.550000e-123 453.0
20 TraesCS1D01G337300 chr6B 96.641 655 22 0 3000 3654 32121467 32120813 0.000000e+00 1088.0
21 TraesCS1D01G337300 chr6B 96.641 655 22 0 3000 3654 648202158 648202812 0.000000e+00 1088.0
22 TraesCS1D01G337300 chr6B 93.233 266 15 3 2738 3000 6285954 6285689 4.420000e-104 388.0
23 TraesCS1D01G337300 chr6B 92.830 265 18 1 2737 3000 32121765 32121501 2.060000e-102 383.0
24 TraesCS1D01G337300 chr6B 91.912 272 20 2 2730 3000 648201854 648202124 2.660000e-101 379.0
25 TraesCS1D01G337300 chr6A 96.336 655 24 0 3000 3654 203770479 203769825 0.000000e+00 1077.0
26 TraesCS1D01G337300 chr6D 96.183 655 25 0 3000 3654 311597757 311597103 0.000000e+00 1072.0
27 TraesCS1D01G337300 chr6D 93.829 551 23 3 3 544 115552873 115552325 0.000000e+00 819.0
28 TraesCS1D01G337300 chr6D 89.147 645 46 11 3 632 445609352 445608717 0.000000e+00 782.0
29 TraesCS1D01G337300 chr1B 96.031 655 26 0 3000 3654 543080060 543080714 0.000000e+00 1066.0
30 TraesCS1D01G337300 chr1B 87.582 918 110 4 2739 3654 487945997 487946912 0.000000e+00 1061.0
31 TraesCS1D01G337300 chr1B 78.400 1625 263 56 995 2587 447174676 447173108 0.000000e+00 976.0
32 TraesCS1D01G337300 chr1B 94.030 536 21 4 1949 2474 577211568 577212102 0.000000e+00 802.0
33 TraesCS1D01G337300 chr1B 94.030 536 21 4 1949 2474 577276120 577276654 0.000000e+00 802.0
34 TraesCS1D01G337300 chr1B 94.269 506 29 0 1150 1655 577206807 577207312 0.000000e+00 774.0
35 TraesCS1D01G337300 chr1B 93.825 502 31 0 1154 1655 577271349 577271850 0.000000e+00 756.0
36 TraesCS1D01G337300 chr1B 80.147 952 163 19 991 1935 576921358 576922290 0.000000e+00 688.0
37 TraesCS1D01G337300 chr1B 79.325 948 174 16 993 1935 577036832 577037762 0.000000e+00 645.0
38 TraesCS1D01G337300 chr1B 93.016 315 22 0 1653 1967 577274515 577274829 9.250000e-126 460.0
39 TraesCS1D01G337300 chr1B 92.698 315 23 0 1653 1967 577209974 577210288 4.300000e-124 455.0
40 TraesCS1D01G337300 chr1B 80.570 597 109 6 2030 2621 576922453 576923047 1.550000e-123 453.0
41 TraesCS1D01G337300 chr1B 93.609 266 15 2 2737 3000 543395923 543396188 2.640000e-106 396.0
42 TraesCS1D01G337300 chr1B 77.147 687 146 7 1254 1935 577028413 577029093 4.420000e-104 388.0
43 TraesCS1D01G337300 chr1B 92.537 268 15 4 2737 3000 554430405 554430671 2.660000e-101 379.0
44 TraesCS1D01G337300 chr1B 92.164 268 20 1 2734 3000 631904301 631904568 9.580000e-101 377.0
45 TraesCS1D01G337300 chr1B 78.173 591 121 7 2032 2618 577029240 577029826 1.600000e-98 370.0
46 TraesCS1D01G337300 chr1B 89.474 304 17 4 849 1152 577201770 577202058 1.600000e-98 370.0
47 TraesCS1D01G337300 chr1B 91.870 123 6 1 738 856 577199747 577199869 6.280000e-38 169.0
48 TraesCS1D01G337300 chr3D 89.275 662 35 8 3 629 552723903 552723243 0.000000e+00 797.0
49 TraesCS1D01G337300 chr3D 90.196 51 1 3 578 628 500226763 500226717 3.050000e-06 63.9
50 TraesCS1D01G337300 chr7A 88.839 663 51 10 3 642 367211329 367210667 0.000000e+00 793.0
51 TraesCS1D01G337300 chr7A 89.638 608 55 5 24 629 217588254 217587653 0.000000e+00 767.0
52 TraesCS1D01G337300 chr5A 93.056 504 31 3 17 519 580818594 580819094 0.000000e+00 734.0
53 TraesCS1D01G337300 chr5A 86.093 151 19 2 485 633 29185976 29185826 1.050000e-35 161.0
54 TraesCS1D01G337300 chr7D 92.565 269 16 3 2732 3000 625118130 625117866 2.060000e-102 383.0
55 TraesCS1D01G337300 chr4A 86.364 132 12 5 504 632 715928527 715928655 4.920000e-29 139.0
56 TraesCS1D01G337300 chr7B 85.470 117 16 1 511 626 646059736 646059852 1.780000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G337300 chr1D 427038116 427041769 3653 False 6748.000000 6748 100.000000 1 3654 1 chr1D.!!$F3 3653
1 TraesCS1D01G337300 chr1D 332411542 332413111 1569 True 1048.000000 1048 79.110000 995 2587 1 chr1D.!!$R1 1592
2 TraesCS1D01G337300 chr1D 473348877 473349408 531 False 756.000000 756 92.551000 3 529 1 chr1D.!!$F4 526
3 TraesCS1D01G337300 chr1D 426978313 426979245 932 False 715.000000 715 80.611000 991 1935 1 chr1D.!!$F1 944
4 TraesCS1D01G337300 chr1D 426987218 426987835 617 False 483.000000 483 80.794000 991 1620 1 chr1D.!!$F2 629
5 TraesCS1D01G337300 chr1D 426930931 426933383 2452 False 313.500000 436 79.855500 991 2621 2 chr1D.!!$F5 1630
6 TraesCS1D01G337300 chr1A 522189302 522191428 2126 False 1076.000000 1849 95.748333 625 2739 3 chr1A.!!$F2 2114
7 TraesCS1D01G337300 chr1A 354830573 354831094 521 True 745.000000 745 92.720000 3 514 1 chr1A.!!$R1 511
8 TraesCS1D01G337300 chr1A 430189070 430189979 909 True 667.000000 667 80.127000 995 1934 1 chr1A.!!$R2 939
9 TraesCS1D01G337300 chr1A 521978748 521979342 594 False 431.000000 431 79.967000 2030 2621 1 chr1A.!!$F1 591
10 TraesCS1D01G337300 chr5D 323850088 323851045 957 False 802.000000 1160 97.468000 2731 3654 2 chr5D.!!$F1 923
11 TraesCS1D01G337300 chr5D 260842775 260843321 546 True 787.000000 787 92.896000 3 541 1 chr5D.!!$R1 538
12 TraesCS1D01G337300 chr2B 412175972 412176882 910 False 1140.000000 1140 89.239000 2737 3654 1 chr2B.!!$F1 917
13 TraesCS1D01G337300 chrUn 97776503 97777154 651 True 1118.000000 1118 97.557000 3000 3654 1 chrUn.!!$R1 654
14 TraesCS1D01G337300 chrUn 371289050 371289730 680 True 512.000000 512 80.401000 991 1686 1 chrUn.!!$R2 695
15 TraesCS1D01G337300 chrUn 374061259 374061853 594 False 453.000000 453 80.570000 2030 2621 1 chrUn.!!$F1 591
16 TraesCS1D01G337300 chr6B 32120813 32121765 952 True 735.500000 1088 94.735500 2737 3654 2 chr6B.!!$R2 917
17 TraesCS1D01G337300 chr6B 648201854 648202812 958 False 733.500000 1088 94.276500 2730 3654 2 chr6B.!!$F1 924
18 TraesCS1D01G337300 chr6A 203769825 203770479 654 True 1077.000000 1077 96.336000 3000 3654 1 chr6A.!!$R1 654
19 TraesCS1D01G337300 chr6D 311597103 311597757 654 True 1072.000000 1072 96.183000 3000 3654 1 chr6D.!!$R2 654
20 TraesCS1D01G337300 chr6D 115552325 115552873 548 True 819.000000 819 93.829000 3 544 1 chr6D.!!$R1 541
21 TraesCS1D01G337300 chr6D 445608717 445609352 635 True 782.000000 782 89.147000 3 632 1 chr6D.!!$R3 629
22 TraesCS1D01G337300 chr1B 543080060 543080714 654 False 1066.000000 1066 96.031000 3000 3654 1 chr1B.!!$F2 654
23 TraesCS1D01G337300 chr1B 487945997 487946912 915 False 1061.000000 1061 87.582000 2739 3654 1 chr1B.!!$F1 915
24 TraesCS1D01G337300 chr1B 447173108 447174676 1568 True 976.000000 976 78.400000 995 2587 1 chr1B.!!$R1 1592
25 TraesCS1D01G337300 chr1B 577206807 577212102 5295 False 677.000000 802 93.665667 1150 2474 3 chr1B.!!$F10 1324
26 TraesCS1D01G337300 chr1B 577271349 577276654 5305 False 672.666667 802 93.623667 1154 2474 3 chr1B.!!$F11 1320
27 TraesCS1D01G337300 chr1B 577036832 577037762 930 False 645.000000 645 79.325000 993 1935 1 chr1B.!!$F5 942
28 TraesCS1D01G337300 chr1B 576921358 576923047 1689 False 570.500000 688 80.358500 991 2621 2 chr1B.!!$F7 1630
29 TraesCS1D01G337300 chr1B 577028413 577029826 1413 False 379.000000 388 77.660000 1254 2618 2 chr1B.!!$F8 1364
30 TraesCS1D01G337300 chr1B 577199747 577202058 2311 False 269.500000 370 90.672000 738 1152 2 chr1B.!!$F9 414
31 TraesCS1D01G337300 chr3D 552723243 552723903 660 True 797.000000 797 89.275000 3 629 1 chr3D.!!$R2 626
32 TraesCS1D01G337300 chr7A 367210667 367211329 662 True 793.000000 793 88.839000 3 642 1 chr7A.!!$R2 639
33 TraesCS1D01G337300 chr7A 217587653 217588254 601 True 767.000000 767 89.638000 24 629 1 chr7A.!!$R1 605
34 TraesCS1D01G337300 chr5A 580818594 580819094 500 False 734.000000 734 93.056000 17 519 1 chr5A.!!$F1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 236 0.532573 ATCCGAGCTTCACGTGATGT 59.467 50.0 26.48 16.30 0.00 3.06 F
1569 4330 0.388520 TCAACGTGACCGAGCTCATG 60.389 55.0 15.40 6.62 37.88 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 7213 0.173708 ACCGCCTTCTCGAGAATGTC 59.826 55.0 27.19 17.96 33.01 3.06 R
2680 9591 0.322456 TAAGCGAGCAAAGTGGCCAT 60.322 50.0 9.72 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 190 3.871463 GCCTCACACACCTTCTCATGAAT 60.871 47.826 0.00 0.00 0.00 2.57
203 217 2.622942 GTTGAAGATCTTGCCAACACCA 59.377 45.455 24.55 9.30 38.84 4.17
222 236 0.532573 ATCCGAGCTTCACGTGATGT 59.467 50.000 26.48 16.30 0.00 3.06
304 318 2.656002 TCCGAAGATGAGGACGAAGAT 58.344 47.619 0.00 0.00 0.00 2.40
430 444 7.881643 TGTTTGTGTGAAATTTATATGCCAC 57.118 32.000 0.00 0.00 0.00 5.01
534 592 0.882927 TTTTAGCGCGCTGTTGGAGT 60.883 50.000 41.85 17.41 0.00 3.85
571 629 1.744320 GAAAACCAGGCAAAGGGCGT 61.744 55.000 0.00 0.00 46.16 5.68
598 656 0.668401 AGTAGTTTTTAGCGCGCGGT 60.668 50.000 37.43 37.43 0.00 5.68
703 761 2.421739 CGGATCCTGGCCGGTTAG 59.578 66.667 11.58 1.14 44.87 2.34
704 762 2.111251 GGATCCTGGCCGGTTAGC 59.889 66.667 11.58 0.30 0.00 3.09
705 763 2.742116 GGATCCTGGCCGGTTAGCA 61.742 63.158 11.58 0.00 0.00 3.49
706 764 1.451936 GATCCTGGCCGGTTAGCAT 59.548 57.895 11.58 0.00 0.00 3.79
707 765 0.603975 GATCCTGGCCGGTTAGCATC 60.604 60.000 11.58 0.00 0.00 3.91
708 766 2.383245 ATCCTGGCCGGTTAGCATCG 62.383 60.000 11.58 0.00 0.00 3.84
721 779 3.576356 CATCGGTGCATGCGGGAC 61.576 66.667 14.09 5.59 37.06 4.46
946 2925 3.125316 ACGCATGCTCTGTTAAGTTAAGC 59.875 43.478 17.13 0.00 0.00 3.09
1062 3052 1.001406 CTCTTCGTGGTCTCTTGCCTT 59.999 52.381 0.00 0.00 0.00 4.35
1079 3069 1.464997 CCTTGCCTTTGTCGTTAGAGC 59.535 52.381 0.00 0.00 0.00 4.09
1569 4330 0.388520 TCAACGTGACCGAGCTCATG 60.389 55.000 15.40 6.62 37.88 3.07
1669 7102 2.367894 GACATGATGGGAGAGATCAGCA 59.632 50.000 0.00 0.00 33.38 4.41
1759 7195 2.526873 ACGCCAGGGTGAAGAGGT 60.527 61.111 5.77 0.00 0.00 3.85
1866 7305 0.251386 TCCTGGACGACTTGCTCTCT 60.251 55.000 0.00 0.00 0.00 3.10
1892 7331 1.133976 CAAGGATGGTGATCAGGGGTC 60.134 57.143 0.00 0.00 0.00 4.46
1978 8865 7.497909 GCATGTTTAATTACCTTACCTGCTAGA 59.502 37.037 0.00 0.00 0.00 2.43
2062 8962 1.069090 GGCAGGAACAGACACGACA 59.931 57.895 0.00 0.00 0.00 4.35
2624 9535 1.840635 AGTCTGCCTTGATCCTTACCC 59.159 52.381 0.00 0.00 0.00 3.69
2635 9546 0.688487 TCCTTACCCCGAAACCACTG 59.312 55.000 0.00 0.00 0.00 3.66
2636 9547 0.958876 CCTTACCCCGAAACCACTGC 60.959 60.000 0.00 0.00 0.00 4.40
2642 9553 1.405105 CCCCGAAACCACTGCAATATG 59.595 52.381 0.00 0.00 0.00 1.78
2651 9562 4.088634 ACCACTGCAATATGTGTTGGAAT 58.911 39.130 3.47 0.00 31.59 3.01
2661 9572 6.677781 ATATGTGTTGGAATAGGTGTTTCG 57.322 37.500 0.00 0.00 0.00 3.46
2677 9588 1.904287 TTCGTTACTGCTTTGCCCAT 58.096 45.000 0.00 0.00 0.00 4.00
2678 9589 1.164411 TCGTTACTGCTTTGCCCATG 58.836 50.000 0.00 0.00 0.00 3.66
2679 9590 0.456653 CGTTACTGCTTTGCCCATGC 60.457 55.000 0.00 0.00 38.26 4.06
2695 9606 1.940883 ATGCATGGCCACTTTGCTCG 61.941 55.000 25.90 2.77 37.28 5.03
2699 9610 0.322456 ATGGCCACTTTGCTCGCTTA 60.322 50.000 8.16 0.00 0.00 3.09
2704 9615 2.223135 GCCACTTTGCTCGCTTAATCTC 60.223 50.000 0.00 0.00 0.00 2.75
2709 9620 3.334583 TTGCTCGCTTAATCTCTTGGT 57.665 42.857 0.00 0.00 0.00 3.67
2885 9798 3.118298 AGAGCCACAAAGCCAAAACAAAT 60.118 39.130 0.00 0.00 0.00 2.32
2994 9907 1.204941 GATATCCCGCGCTACCATCTT 59.795 52.381 5.56 0.00 0.00 2.40
3100 10047 8.729805 TGTTCTGTTAAAAGCCAAATCATTTT 57.270 26.923 0.00 0.00 0.00 1.82
3259 10206 1.887242 GTGCGCCACAACACTCTCA 60.887 57.895 4.18 0.00 34.08 3.27
3285 10232 3.826157 ACGGGCAATCAAAGAAAAGATGA 59.174 39.130 0.00 0.00 0.00 2.92
3536 10483 1.338674 CCAACACAACTGATCGGGCTA 60.339 52.381 6.47 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 140 0.107214 GGAAGACATTCCGCCCATGA 60.107 55.000 0.00 0.00 45.50 3.07
176 190 2.288666 GGCAAGATCTTCAACGGCATA 58.711 47.619 4.57 0.00 0.00 3.14
203 217 0.532573 ACATCACGTGAAGCTCGGAT 59.467 50.000 24.13 0.00 0.00 4.18
222 236 0.744057 ATCATCATTGTCGCGCACCA 60.744 50.000 8.75 0.00 0.00 4.17
304 318 0.247460 CACATCAAGCCTCGTCCTCA 59.753 55.000 0.00 0.00 0.00 3.86
430 444 6.647569 TCAAACATTCAAAATGCAATGAACG 58.352 32.000 13.17 9.16 38.29 3.95
552 610 1.006220 CGCCCTTTGCCTGGTTTTC 60.006 57.895 0.00 0.00 36.24 2.29
571 629 3.058501 GCGCTAAAAACTACTTTCCTGCA 60.059 43.478 0.00 0.00 0.00 4.41
574 632 2.159037 GCGCGCTAAAAACTACTTTCCT 59.841 45.455 26.67 0.00 0.00 3.36
692 750 2.588877 CCGATGCTAACCGGCCAG 60.589 66.667 0.00 0.00 39.22 4.85
704 762 3.576356 GTCCCGCATGCACCGATG 61.576 66.667 19.57 0.00 0.00 3.84
721 779 2.461002 CTTTGTCCGCAACGTCGTCG 62.461 60.000 0.00 0.00 43.34 5.12
722 780 1.200839 CTTTGTCCGCAACGTCGTC 59.799 57.895 0.00 0.00 33.82 4.20
723 781 2.877974 GCTTTGTCCGCAACGTCGT 61.878 57.895 0.00 0.00 33.82 4.34
724 782 2.127758 GCTTTGTCCGCAACGTCG 60.128 61.111 0.00 0.00 33.82 5.12
725 783 2.127758 CGCTTTGTCCGCAACGTC 60.128 61.111 0.00 0.00 33.82 4.34
726 784 3.645975 CCGCTTTGTCCGCAACGT 61.646 61.111 0.00 0.00 33.82 3.99
728 786 3.879351 CTGCCGCTTTGTCCGCAAC 62.879 63.158 0.00 0.00 33.82 4.17
736 794 4.771684 CGGAAATCTGCCGCTTTG 57.228 55.556 0.00 0.00 42.55 2.77
779 841 2.202570 CGTGTCCCGCTCGGTAAG 60.203 66.667 7.59 0.00 0.00 2.34
1062 3052 0.685097 AGGCTCTAACGACAAAGGCA 59.315 50.000 0.00 0.00 36.82 4.75
1079 3069 1.363744 CTTGCCGCTAGTTCTGAAGG 58.636 55.000 0.00 0.00 0.00 3.46
1420 4181 1.282248 GCGCTGAGTAGTTGCACGAA 61.282 55.000 0.00 0.00 0.00 3.85
1569 4330 0.517316 CGGTGTTGGTTAAGCTGAGC 59.483 55.000 6.19 0.00 0.00 4.26
1669 7102 0.317938 GCGATCGTACCGAGCAGATT 60.318 55.000 17.81 0.00 42.67 2.40
1740 7176 2.266055 CTCTTCACCCTGGCGTCC 59.734 66.667 0.00 0.00 0.00 4.79
1746 7182 2.266055 GCCGACCTCTTCACCCTG 59.734 66.667 0.00 0.00 0.00 4.45
1759 7195 4.189188 GTCGAGCTTAGCCGCCGA 62.189 66.667 0.00 5.22 32.82 5.54
1777 7213 0.173708 ACCGCCTTCTCGAGAATGTC 59.826 55.000 27.19 17.96 33.01 3.06
1866 7305 1.899142 TGATCACCATCCTTGACGACA 59.101 47.619 0.00 0.00 0.00 4.35
1892 7331 1.903877 ATCAGTCCGGTCCAGCTTGG 61.904 60.000 0.00 0.00 39.43 3.61
1978 8865 1.584724 ACTATGCTAGTGGTGCCCTT 58.415 50.000 0.00 0.00 37.69 3.95
2062 8962 6.071108 CCATGGTCCATTCTATCGTCTTAGAT 60.071 42.308 2.57 0.00 34.79 1.98
2590 9498 1.488393 GCAGACTTAAGGCCAGGAGAT 59.512 52.381 5.01 0.00 0.00 2.75
2624 9535 2.487762 ACACATATTGCAGTGGTTTCGG 59.512 45.455 8.49 0.00 39.99 4.30
2635 9546 5.835113 ACACCTATTCCAACACATATTGC 57.165 39.130 0.00 0.00 0.00 3.56
2636 9547 6.966632 CGAAACACCTATTCCAACACATATTG 59.033 38.462 0.00 0.00 0.00 1.90
2642 9553 4.823790 AACGAAACACCTATTCCAACAC 57.176 40.909 0.00 0.00 0.00 3.32
2651 9562 3.249080 GCAAAGCAGTAACGAAACACCTA 59.751 43.478 0.00 0.00 0.00 3.08
2661 9572 3.423848 GCATGGGCAAAGCAGTAAC 57.576 52.632 0.00 0.00 40.72 2.50
2677 9588 2.628696 CGAGCAAAGTGGCCATGCA 61.629 57.895 27.15 0.00 42.45 3.96
2678 9589 2.180017 CGAGCAAAGTGGCCATGC 59.820 61.111 20.03 20.03 40.34 4.06
2679 9590 1.870055 AAGCGAGCAAAGTGGCCATG 61.870 55.000 9.72 4.12 0.00 3.66
2680 9591 0.322456 TAAGCGAGCAAAGTGGCCAT 60.322 50.000 9.72 0.00 0.00 4.40
2695 9606 5.877564 AGTGAGCTAAACCAAGAGATTAAGC 59.122 40.000 0.00 0.00 0.00 3.09
2699 9610 6.655425 GGTAAAGTGAGCTAAACCAAGAGATT 59.345 38.462 0.00 0.00 32.72 2.40
2704 9615 6.262273 TGAAAGGTAAAGTGAGCTAAACCAAG 59.738 38.462 0.00 0.00 34.08 3.61
2841 9753 5.772672 TCTTTGTGAGCCAGCCTTTTATTTA 59.227 36.000 0.00 0.00 0.00 1.40
2994 9907 2.128290 TACTCACTCCGACGGGTGGA 62.128 60.000 25.50 15.39 34.57 4.02
3100 10047 1.126488 TGGGCAATTTGGAACTGCAA 58.874 45.000 0.00 0.00 37.83 4.08
3259 10206 1.698506 TTCTTTGATTGCCCGTTGGT 58.301 45.000 0.00 0.00 0.00 3.67
3536 10483 1.980765 TGGAGGTTCAGCTCACTCATT 59.019 47.619 8.24 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.