Multiple sequence alignment - TraesCS1D01G336800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G336800 chr1D 100.000 2798 0 0 1 2798 426753334 426756131 0.000000e+00 5168.0
1 TraesCS1D01G336800 chr1D 94.721 341 16 2 1 340 396286347 396286008 1.910000e-146 529.0
2 TraesCS1D01G336800 chr1D 94.512 164 6 1 1372 1535 426754666 426754826 1.660000e-62 250.0
3 TraesCS1D01G336800 chr1D 94.512 164 6 1 1333 1493 426754705 426754868 1.660000e-62 250.0
4 TraesCS1D01G336800 chr1D 92.623 122 6 1 1414 1535 426754666 426754784 3.710000e-39 172.0
5 TraesCS1D01G336800 chr1D 92.623 122 6 1 1333 1451 426754747 426754868 3.710000e-39 172.0
6 TraesCS1D01G336800 chr1D 88.750 80 6 1 1456 1535 426754666 426754742 8.250000e-16 95.3
7 TraesCS1D01G336800 chr1D 88.750 80 6 1 1333 1409 426754789 426754868 8.250000e-16 95.3
8 TraesCS1D01G336800 chr1D 96.774 31 1 0 2463 2493 426755823 426755793 5.000000e-03 52.8
9 TraesCS1D01G336800 chr1B 91.247 1131 65 17 343 1451 576596978 576598096 0.000000e+00 1509.0
10 TraesCS1D01G336800 chr1B 95.195 333 15 1 7 339 85405758 85405427 2.470000e-145 525.0
11 TraesCS1D01G336800 chr1B 88.991 436 30 7 1414 1840 576597978 576598404 8.880000e-145 523.0
12 TraesCS1D01G336800 chr1B 85.294 272 30 10 2410 2678 576599057 576599321 3.550000e-69 272.0
13 TraesCS1D01G336800 chr1B 79.351 339 39 18 2109 2422 576598420 576598752 2.820000e-50 209.0
14 TraesCS1D01G336800 chr1B 90.164 122 9 1 1372 1493 576597978 576598096 3.730000e-34 156.0
15 TraesCS1D01G336800 chr1B 88.750 80 6 1 1333 1409 576598017 576598096 8.250000e-16 95.3
16 TraesCS1D01G336800 chr1B 78.992 119 16 6 412 530 13110471 13110580 3.870000e-09 73.1
17 TraesCS1D01G336800 chr1A 91.008 645 40 12 773 1409 521863232 521863866 0.000000e+00 854.0
18 TraesCS1D01G336800 chr1A 91.170 487 35 6 1901 2384 521864146 521864627 0.000000e+00 654.0
19 TraesCS1D01G336800 chr1A 95.477 398 12 4 1451 1848 521863785 521864176 5.090000e-177 630.0
20 TraesCS1D01G336800 chr1A 89.407 472 19 8 2346 2795 521868491 521868953 1.450000e-157 566.0
21 TraesCS1D01G336800 chr1A 95.562 338 14 1 1 337 365186806 365187143 8.820000e-150 540.0
22 TraesCS1D01G336800 chr1A 88.288 333 31 4 468 796 521862887 521863215 2.610000e-105 392.0
23 TraesCS1D01G336800 chr1A 79.528 127 25 1 405 530 558506781 558506907 3.840000e-14 89.8
24 TraesCS1D01G336800 chr1A 83.582 67 10 1 413 478 67468832 67468898 8.370000e-06 62.1
25 TraesCS1D01G336800 chr2D 95.652 345 13 2 1 344 97620894 97621237 1.130000e-153 553.0
26 TraesCS1D01G336800 chr2D 100.000 32 0 0 2455 2486 627260757 627260788 3.010000e-05 60.2
27 TraesCS1D01G336800 chr5B 95.549 337 14 1 1 337 37077042 37076707 3.170000e-149 538.0
28 TraesCS1D01G336800 chr2B 94.706 340 18 0 1 340 58535893 58536232 1.910000e-146 529.0
29 TraesCS1D01G336800 chr2B 90.698 43 3 1 2449 2491 14833259 14833218 3.890000e-04 56.5
30 TraesCS1D01G336800 chr7D 94.412 340 18 1 1 340 27321832 27321494 3.190000e-144 521.0
31 TraesCS1D01G336800 chr7D 86.441 118 11 3 410 525 77164512 77164626 1.050000e-24 124.0
32 TraesCS1D01G336800 chr4D 94.135 341 18 2 1 340 4589381 4589042 4.130000e-143 518.0
33 TraesCS1D01G336800 chr3D 94.135 341 18 2 1 340 520452376 520452715 4.130000e-143 518.0
34 TraesCS1D01G336800 chr6B 81.955 133 20 4 406 536 448350994 448350864 2.950000e-20 110.0
35 TraesCS1D01G336800 chr7B 82.353 119 20 1 413 530 651142124 651142242 4.930000e-18 102.0
36 TraesCS1D01G336800 chr5A 86.301 73 6 3 410 479 385856313 385856384 2.990000e-10 76.8
37 TraesCS1D01G336800 chr4B 78.151 119 17 6 412 530 126040667 126040558 1.800000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G336800 chr1D 426753334 426756131 2797 False 886.085714 5168 93.1100 1 2798 7 chr1D.!!$F1 2797
1 TraesCS1D01G336800 chr1B 576596978 576599321 2343 False 460.716667 1509 87.2995 343 2678 6 chr1B.!!$F2 2335
2 TraesCS1D01G336800 chr1A 521862887 521868953 6066 False 619.200000 854 91.0700 468 2795 5 chr1A.!!$F4 2327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.039617 TTTGTGCAATTTCTCCCGCG 60.040 50.0 0.0 0.0 0.0 6.46 F
330 331 0.109723 TTTGCGGGGTCTGCTAAAGT 59.890 50.0 0.3 0.0 0.0 2.66 F
334 335 0.321653 CGGGGTCTGCTAAAGTTGCT 60.322 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1463 0.321653 GCGGCCTTCTCCTTCTTGAA 60.322 55.0 0.00 0.0 0.00 2.69 R
1435 1505 0.321653 GCGGCCTTCTCCTTCTTGAA 60.322 55.0 0.00 0.0 0.00 2.69 R
2087 2168 0.742281 CGGCCATCTCAGTTGACTGG 60.742 60.0 2.24 0.0 43.91 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.043349 TCCGGCGAGGAGGATTGA 60.043 61.111 9.30 0.00 45.98 2.57
25 26 2.127869 TCCGGCGAGGAGGATTGAG 61.128 63.158 9.30 0.00 45.98 3.02
26 27 2.279784 CGGCGAGGAGGATTGAGC 60.280 66.667 0.00 0.00 0.00 4.26
27 28 2.279784 GGCGAGGAGGATTGAGCG 60.280 66.667 0.00 0.00 0.00 5.03
28 29 2.496817 GCGAGGAGGATTGAGCGT 59.503 61.111 0.00 0.00 0.00 5.07
29 30 1.590259 GCGAGGAGGATTGAGCGTC 60.590 63.158 0.00 0.00 0.00 5.19
30 31 1.066587 CGAGGAGGATTGAGCGTCC 59.933 63.158 0.00 0.00 41.85 4.79
31 32 1.066587 GAGGAGGATTGAGCGTCCG 59.933 63.158 2.74 0.00 45.15 4.79
32 33 2.107141 GGAGGATTGAGCGTCCGG 59.893 66.667 0.00 0.00 40.76 5.14
33 34 2.586357 GAGGATTGAGCGTCCGGC 60.586 66.667 0.00 0.00 40.76 6.13
49 50 4.148825 GCTCCTCCACGGCGTCAT 62.149 66.667 10.85 0.00 0.00 3.06
50 51 2.105128 CTCCTCCACGGCGTCATC 59.895 66.667 10.85 0.00 0.00 2.92
51 52 3.432051 CTCCTCCACGGCGTCATCC 62.432 68.421 10.85 0.00 0.00 3.51
52 53 3.770040 CCTCCACGGCGTCATCCA 61.770 66.667 10.85 0.00 0.00 3.41
53 54 2.202797 CTCCACGGCGTCATCCAG 60.203 66.667 10.85 0.00 0.00 3.86
54 55 2.994995 TCCACGGCGTCATCCAGT 60.995 61.111 10.85 0.00 0.00 4.00
55 56 2.047274 CCACGGCGTCATCCAGTT 60.047 61.111 10.85 0.00 0.00 3.16
56 57 1.671054 CCACGGCGTCATCCAGTTT 60.671 57.895 10.85 0.00 0.00 2.66
57 58 1.497278 CACGGCGTCATCCAGTTTG 59.503 57.895 10.85 0.00 0.00 2.93
58 59 2.325082 ACGGCGTCATCCAGTTTGC 61.325 57.895 6.77 0.00 0.00 3.68
59 60 2.877691 GGCGTCATCCAGTTTGCC 59.122 61.111 0.00 0.00 35.04 4.52
60 61 2.480555 GCGTCATCCAGTTTGCCG 59.519 61.111 0.00 0.00 0.00 5.69
61 62 2.480555 CGTCATCCAGTTTGCCGC 59.519 61.111 0.00 0.00 0.00 6.53
62 63 2.324330 CGTCATCCAGTTTGCCGCA 61.324 57.895 0.00 0.00 0.00 5.69
63 64 1.851021 CGTCATCCAGTTTGCCGCAA 61.851 55.000 0.38 0.38 0.00 4.85
64 65 0.387239 GTCATCCAGTTTGCCGCAAC 60.387 55.000 4.98 1.53 0.00 4.17
65 66 1.080569 CATCCAGTTTGCCGCAACC 60.081 57.895 4.98 0.00 0.00 3.77
66 67 1.228552 ATCCAGTTTGCCGCAACCT 60.229 52.632 4.98 0.25 0.00 3.50
67 68 1.244019 ATCCAGTTTGCCGCAACCTC 61.244 55.000 4.98 0.00 0.00 3.85
68 69 2.252260 CAGTTTGCCGCAACCTCG 59.748 61.111 4.98 0.00 0.00 4.63
69 70 3.660111 AGTTTGCCGCAACCTCGC 61.660 61.111 4.98 0.00 0.00 5.03
70 71 4.700365 GTTTGCCGCAACCTCGCC 62.700 66.667 4.98 0.00 0.00 5.54
81 82 4.933064 CCTCGCCGCCGTCAGATC 62.933 72.222 0.00 0.00 35.54 2.75
82 83 4.933064 CTCGCCGCCGTCAGATCC 62.933 72.222 0.00 0.00 35.54 3.36
86 87 4.570663 CCGCCGTCAGATCCGACC 62.571 72.222 3.47 0.00 31.91 4.79
87 88 4.570663 CGCCGTCAGATCCGACCC 62.571 72.222 3.47 0.00 31.91 4.46
88 89 4.222847 GCCGTCAGATCCGACCCC 62.223 72.222 3.47 0.00 31.91 4.95
89 90 3.537874 CCGTCAGATCCGACCCCC 61.538 72.222 3.47 0.00 31.91 5.40
90 91 2.442272 CGTCAGATCCGACCCCCT 60.442 66.667 3.47 0.00 31.91 4.79
91 92 1.152819 CGTCAGATCCGACCCCCTA 60.153 63.158 3.47 0.00 31.91 3.53
92 93 1.173444 CGTCAGATCCGACCCCCTAG 61.173 65.000 3.47 0.00 31.91 3.02
93 94 0.106116 GTCAGATCCGACCCCCTAGT 60.106 60.000 0.00 0.00 0.00 2.57
94 95 1.144503 GTCAGATCCGACCCCCTAGTA 59.855 57.143 0.00 0.00 0.00 1.82
95 96 1.144503 TCAGATCCGACCCCCTAGTAC 59.855 57.143 0.00 0.00 0.00 2.73
96 97 1.145325 CAGATCCGACCCCCTAGTACT 59.855 57.143 0.00 0.00 0.00 2.73
97 98 2.374504 CAGATCCGACCCCCTAGTACTA 59.625 54.545 1.89 1.89 0.00 1.82
98 99 2.643801 AGATCCGACCCCCTAGTACTAG 59.356 54.545 21.11 21.11 0.00 2.57
99 100 1.898863 TCCGACCCCCTAGTACTAGT 58.101 55.000 24.84 10.23 0.00 2.57
100 101 2.208872 TCCGACCCCCTAGTACTAGTT 58.791 52.381 24.84 9.17 0.00 2.24
101 102 2.582636 TCCGACCCCCTAGTACTAGTTT 59.417 50.000 24.84 8.85 0.00 2.66
102 103 3.785887 TCCGACCCCCTAGTACTAGTTTA 59.214 47.826 24.84 0.00 0.00 2.01
103 104 4.229582 TCCGACCCCCTAGTACTAGTTTAA 59.770 45.833 24.84 3.38 0.00 1.52
104 105 4.339530 CCGACCCCCTAGTACTAGTTTAAC 59.660 50.000 24.84 13.70 0.00 2.01
105 106 4.035675 CGACCCCCTAGTACTAGTTTAACG 59.964 50.000 24.84 19.63 0.00 3.18
106 107 4.935578 ACCCCCTAGTACTAGTTTAACGT 58.064 43.478 24.84 11.27 0.00 3.99
107 108 6.074698 ACCCCCTAGTACTAGTTTAACGTA 57.925 41.667 24.84 0.00 0.00 3.57
108 109 6.122964 ACCCCCTAGTACTAGTTTAACGTAG 58.877 44.000 24.84 9.02 0.00 3.51
110 111 7.092578 ACCCCCTAGTACTAGTTTAACGTAGTA 60.093 40.741 24.84 8.99 45.00 1.82
111 112 7.939588 CCCCCTAGTACTAGTTTAACGTAGTAT 59.060 40.741 24.84 8.36 45.00 2.12
112 113 8.778358 CCCCTAGTACTAGTTTAACGTAGTATG 58.222 40.741 24.84 7.41 45.00 2.39
113 114 9.331282 CCCTAGTACTAGTTTAACGTAGTATGT 57.669 37.037 24.84 0.00 45.00 2.29
127 128 8.789825 AACGTAGTATGTAGTATAGCTATGCT 57.210 34.615 24.97 24.97 45.00 3.79
128 129 8.789825 ACGTAGTATGTAGTATAGCTATGCTT 57.210 34.615 26.43 13.39 41.94 3.91
129 130 8.666573 ACGTAGTATGTAGTATAGCTATGCTTG 58.333 37.037 26.43 10.04 41.94 4.01
130 131 8.666573 CGTAGTATGTAGTATAGCTATGCTTGT 58.333 37.037 26.43 15.89 40.44 3.16
133 134 9.742144 AGTATGTAGTATAGCTATGCTTGTAGT 57.258 33.333 26.43 16.62 40.44 2.73
136 137 9.698309 ATGTAGTATAGCTATGCTTGTAGTTTG 57.302 33.333 26.43 0.00 40.44 2.93
137 138 8.692710 TGTAGTATAGCTATGCTTGTAGTTTGT 58.307 33.333 26.43 4.23 40.44 2.83
138 139 9.530633 GTAGTATAGCTATGCTTGTAGTTTGTT 57.469 33.333 26.43 3.76 40.44 2.83
139 140 8.425577 AGTATAGCTATGCTTGTAGTTTGTTG 57.574 34.615 17.62 0.00 40.44 3.33
140 141 8.258007 AGTATAGCTATGCTTGTAGTTTGTTGA 58.742 33.333 17.62 0.00 40.44 3.18
141 142 9.046296 GTATAGCTATGCTTGTAGTTTGTTGAT 57.954 33.333 16.77 0.00 40.44 2.57
142 143 6.428385 AGCTATGCTTGTAGTTTGTTGATC 57.572 37.500 0.00 0.00 33.89 2.92
143 144 5.939883 AGCTATGCTTGTAGTTTGTTGATCA 59.060 36.000 0.00 0.00 33.89 2.92
144 145 6.600822 AGCTATGCTTGTAGTTTGTTGATCAT 59.399 34.615 0.00 0.00 33.89 2.45
145 146 6.690098 GCTATGCTTGTAGTTTGTTGATCATG 59.310 38.462 0.00 0.00 0.00 3.07
146 147 6.579666 ATGCTTGTAGTTTGTTGATCATGT 57.420 33.333 0.00 0.00 0.00 3.21
147 148 7.686438 ATGCTTGTAGTTTGTTGATCATGTA 57.314 32.000 0.00 0.00 0.00 2.29
148 149 7.503521 TGCTTGTAGTTTGTTGATCATGTAA 57.496 32.000 0.00 0.00 0.00 2.41
149 150 8.109705 TGCTTGTAGTTTGTTGATCATGTAAT 57.890 30.769 0.00 0.00 0.00 1.89
181 182 9.890629 ATGTAGTATGTGATGAACTATGTTTGT 57.109 29.630 0.00 0.00 0.00 2.83
182 183 9.150348 TGTAGTATGTGATGAACTATGTTTGTG 57.850 33.333 0.00 0.00 0.00 3.33
183 184 7.076842 AGTATGTGATGAACTATGTTTGTGC 57.923 36.000 0.00 0.00 0.00 4.57
184 185 5.963176 ATGTGATGAACTATGTTTGTGCA 57.037 34.783 0.00 0.00 0.00 4.57
185 186 5.764487 TGTGATGAACTATGTTTGTGCAA 57.236 34.783 0.00 0.00 0.00 4.08
186 187 6.330004 TGTGATGAACTATGTTTGTGCAAT 57.670 33.333 0.00 0.00 0.00 3.56
187 188 6.747125 TGTGATGAACTATGTTTGTGCAATT 58.253 32.000 0.00 0.00 0.00 2.32
188 189 7.208777 TGTGATGAACTATGTTTGTGCAATTT 58.791 30.769 0.00 0.00 0.00 1.82
189 190 7.381948 TGTGATGAACTATGTTTGTGCAATTTC 59.618 33.333 0.00 0.00 0.00 2.17
190 191 7.596248 GTGATGAACTATGTTTGTGCAATTTCT 59.404 33.333 0.00 0.00 0.00 2.52
191 192 7.809331 TGATGAACTATGTTTGTGCAATTTCTC 59.191 33.333 0.00 0.00 0.00 2.87
192 193 6.446318 TGAACTATGTTTGTGCAATTTCTCC 58.554 36.000 0.00 0.00 0.00 3.71
193 194 5.391312 ACTATGTTTGTGCAATTTCTCCC 57.609 39.130 0.00 0.00 0.00 4.30
194 195 2.791383 TGTTTGTGCAATTTCTCCCG 57.209 45.000 0.00 0.00 0.00 5.14
195 196 1.269517 TGTTTGTGCAATTTCTCCCGC 60.270 47.619 0.00 0.00 0.00 6.13
196 197 0.039617 TTTGTGCAATTTCTCCCGCG 60.040 50.000 0.00 0.00 0.00 6.46
197 198 0.886938 TTGTGCAATTTCTCCCGCGA 60.887 50.000 8.23 0.00 0.00 5.87
198 199 0.886938 TGTGCAATTTCTCCCGCGAA 60.887 50.000 8.23 0.00 0.00 4.70
199 200 0.239879 GTGCAATTTCTCCCGCGAAA 59.760 50.000 8.23 0.00 37.31 3.46
200 201 0.521291 TGCAATTTCTCCCGCGAAAG 59.479 50.000 8.23 4.21 36.44 2.62
201 202 0.521735 GCAATTTCTCCCGCGAAAGT 59.478 50.000 8.23 0.00 36.44 2.66
202 203 1.735571 GCAATTTCTCCCGCGAAAGTA 59.264 47.619 8.23 0.00 36.44 2.24
203 204 2.354821 GCAATTTCTCCCGCGAAAGTAT 59.645 45.455 8.23 0.34 36.44 2.12
204 205 3.181500 GCAATTTCTCCCGCGAAAGTATT 60.181 43.478 8.23 6.37 36.44 1.89
205 206 4.674362 GCAATTTCTCCCGCGAAAGTATTT 60.674 41.667 8.23 0.00 43.98 1.40
206 207 5.399013 CAATTTCTCCCGCGAAAGTATTTT 58.601 37.500 8.23 0.00 39.27 1.82
207 208 5.638596 ATTTCTCCCGCGAAAGTATTTTT 57.361 34.783 8.23 0.00 39.27 1.94
231 232 9.781834 TTTTCAAATTATGCAGGTTTAGATACG 57.218 29.630 0.00 0.00 0.00 3.06
232 233 7.490962 TCAAATTATGCAGGTTTAGATACGG 57.509 36.000 0.00 0.00 0.00 4.02
233 234 6.485313 TCAAATTATGCAGGTTTAGATACGGG 59.515 38.462 0.00 0.00 0.00 5.28
234 235 5.562298 ATTATGCAGGTTTAGATACGGGT 57.438 39.130 0.00 0.00 0.00 5.28
235 236 3.926058 ATGCAGGTTTAGATACGGGTT 57.074 42.857 0.00 0.00 0.00 4.11
236 237 3.255969 TGCAGGTTTAGATACGGGTTC 57.744 47.619 0.00 0.00 0.00 3.62
237 238 2.835764 TGCAGGTTTAGATACGGGTTCT 59.164 45.455 0.00 0.00 0.00 3.01
238 239 3.195661 GCAGGTTTAGATACGGGTTCTG 58.804 50.000 0.00 0.00 0.00 3.02
239 240 3.195661 CAGGTTTAGATACGGGTTCTGC 58.804 50.000 0.00 0.00 0.00 4.26
240 241 3.105283 AGGTTTAGATACGGGTTCTGCT 58.895 45.455 0.00 0.00 0.00 4.24
241 242 3.132467 AGGTTTAGATACGGGTTCTGCTC 59.868 47.826 0.00 0.00 0.00 4.26
243 244 2.336945 TAGATACGGGTTCTGCTCGA 57.663 50.000 0.00 0.00 45.67 4.04
244 245 0.739561 AGATACGGGTTCTGCTCGAC 59.260 55.000 0.00 0.00 45.67 4.20
245 246 0.248949 GATACGGGTTCTGCTCGACC 60.249 60.000 0.00 0.00 45.67 4.79
246 247 2.001361 ATACGGGTTCTGCTCGACCG 62.001 60.000 6.81 6.81 45.67 4.79
251 252 4.435436 TTCTGCTCGACCGCGCAT 62.435 61.111 8.75 0.00 35.21 4.73
255 256 3.788766 GCTCGACCGCGCATGTTT 61.789 61.111 8.75 0.00 37.46 2.83
256 257 2.860293 CTCGACCGCGCATGTTTT 59.140 55.556 8.75 0.00 37.46 2.43
257 258 1.206578 CTCGACCGCGCATGTTTTT 59.793 52.632 8.75 0.00 37.46 1.94
258 259 1.059657 CTCGACCGCGCATGTTTTTG 61.060 55.000 8.75 0.00 37.46 2.44
259 260 1.082431 CGACCGCGCATGTTTTTGA 60.082 52.632 8.75 0.00 0.00 2.69
260 261 1.327292 CGACCGCGCATGTTTTTGAC 61.327 55.000 8.75 0.00 0.00 3.18
261 262 1.001745 GACCGCGCATGTTTTTGACC 61.002 55.000 8.75 0.00 0.00 4.02
262 263 1.732683 CCGCGCATGTTTTTGACCC 60.733 57.895 8.75 0.00 0.00 4.46
263 264 2.080062 CGCGCATGTTTTTGACCCG 61.080 57.895 8.75 0.00 0.00 5.28
264 265 2.371923 GCGCATGTTTTTGACCCGC 61.372 57.895 0.30 0.00 34.07 6.13
265 266 1.007964 CGCATGTTTTTGACCCGCA 60.008 52.632 0.00 0.00 0.00 5.69
266 267 0.596083 CGCATGTTTTTGACCCGCAA 60.596 50.000 0.00 0.00 33.88 4.85
267 268 1.576356 GCATGTTTTTGACCCGCAAA 58.424 45.000 0.00 0.00 44.38 3.68
268 269 1.260297 GCATGTTTTTGACCCGCAAAC 59.740 47.619 0.00 0.00 45.64 2.93
269 270 1.520590 CATGTTTTTGACCCGCAAACG 59.479 47.619 0.00 0.00 45.64 3.60
270 271 0.802607 TGTTTTTGACCCGCAAACGC 60.803 50.000 0.00 0.00 45.64 4.84
280 281 4.626628 GCAAACGCGATCTTCGTC 57.373 55.556 15.93 0.00 42.81 4.20
281 282 1.779061 GCAAACGCGATCTTCGTCA 59.221 52.632 15.93 0.00 42.81 4.35
282 283 0.162933 GCAAACGCGATCTTCGTCAA 59.837 50.000 15.93 0.00 42.81 3.18
283 284 1.397945 GCAAACGCGATCTTCGTCAAA 60.398 47.619 15.93 0.00 42.81 2.69
284 285 2.222624 CAAACGCGATCTTCGTCAAAC 58.777 47.619 15.93 0.00 42.81 2.93
285 286 0.788391 AACGCGATCTTCGTCAAACC 59.212 50.000 15.93 0.00 42.81 3.27
286 287 1.340465 CGCGATCTTCGTCAAACCG 59.660 57.895 0.00 0.00 42.81 4.44
287 288 1.058903 GCGATCTTCGTCAAACCGC 59.941 57.895 0.00 0.00 42.81 5.68
288 289 1.623081 GCGATCTTCGTCAAACCGCA 61.623 55.000 0.00 0.00 42.81 5.69
289 290 0.787787 CGATCTTCGTCAAACCGCAA 59.212 50.000 0.00 0.00 34.72 4.85
290 291 1.193650 CGATCTTCGTCAAACCGCAAA 59.806 47.619 0.00 0.00 34.72 3.68
291 292 2.571206 GATCTTCGTCAAACCGCAAAC 58.429 47.619 0.00 0.00 0.00 2.93
292 293 0.302288 TCTTCGTCAAACCGCAAACG 59.698 50.000 0.00 0.00 39.67 3.60
293 294 1.259544 CTTCGTCAAACCGCAAACGC 61.260 55.000 0.00 0.00 38.22 4.84
309 310 3.171056 GCGTTTTGCGGGTCGTAT 58.829 55.556 0.00 0.00 41.69 3.06
310 311 1.498611 GCGTTTTGCGGGTCGTATT 59.501 52.632 0.00 0.00 41.69 1.89
311 312 0.110101 GCGTTTTGCGGGTCGTATTT 60.110 50.000 0.00 0.00 41.69 1.40
312 313 1.663730 GCGTTTTGCGGGTCGTATTTT 60.664 47.619 0.00 0.00 41.69 1.82
313 314 2.652795 CGTTTTGCGGGTCGTATTTTT 58.347 42.857 0.00 0.00 36.85 1.94
314 315 2.402378 CGTTTTGCGGGTCGTATTTTTG 59.598 45.455 0.00 0.00 36.85 2.44
315 316 2.053282 TTTGCGGGTCGTATTTTTGC 57.947 45.000 0.00 0.00 0.00 3.68
316 317 0.110147 TTGCGGGTCGTATTTTTGCG 60.110 50.000 0.00 0.00 0.00 4.85
317 318 1.226184 GCGGGTCGTATTTTTGCGG 60.226 57.895 0.00 0.00 0.00 5.69
318 319 1.426223 CGGGTCGTATTTTTGCGGG 59.574 57.895 0.00 0.00 0.00 6.13
319 320 1.804598 GGGTCGTATTTTTGCGGGG 59.195 57.895 0.00 0.00 0.00 5.73
320 321 0.961857 GGGTCGTATTTTTGCGGGGT 60.962 55.000 0.00 0.00 0.00 4.95
321 322 0.448990 GGTCGTATTTTTGCGGGGTC 59.551 55.000 0.00 0.00 0.00 4.46
322 323 1.445871 GTCGTATTTTTGCGGGGTCT 58.554 50.000 0.00 0.00 0.00 3.85
323 324 1.129811 GTCGTATTTTTGCGGGGTCTG 59.870 52.381 0.00 0.00 0.00 3.51
324 325 0.179174 CGTATTTTTGCGGGGTCTGC 60.179 55.000 0.00 0.00 0.00 4.26
325 326 1.173913 GTATTTTTGCGGGGTCTGCT 58.826 50.000 0.30 0.00 0.00 4.24
326 327 2.361789 GTATTTTTGCGGGGTCTGCTA 58.638 47.619 0.30 0.00 0.00 3.49
327 328 1.917872 ATTTTTGCGGGGTCTGCTAA 58.082 45.000 0.30 0.00 0.00 3.09
328 329 1.693627 TTTTTGCGGGGTCTGCTAAA 58.306 45.000 4.70 4.70 35.76 1.85
329 330 1.243902 TTTTGCGGGGTCTGCTAAAG 58.756 50.000 4.70 0.00 33.36 1.85
330 331 0.109723 TTTGCGGGGTCTGCTAAAGT 59.890 50.000 0.30 0.00 0.00 2.66
331 332 0.109723 TTGCGGGGTCTGCTAAAGTT 59.890 50.000 0.30 0.00 0.00 2.66
332 333 0.605319 TGCGGGGTCTGCTAAAGTTG 60.605 55.000 0.30 0.00 0.00 3.16
333 334 1.923227 GCGGGGTCTGCTAAAGTTGC 61.923 60.000 0.00 0.00 0.00 4.17
334 335 0.321653 CGGGGTCTGCTAAAGTTGCT 60.322 55.000 0.00 0.00 0.00 3.91
335 336 1.454201 GGGGTCTGCTAAAGTTGCTC 58.546 55.000 0.00 0.00 0.00 4.26
336 337 1.003696 GGGGTCTGCTAAAGTTGCTCT 59.996 52.381 0.00 0.00 0.00 4.09
337 338 2.236395 GGGGTCTGCTAAAGTTGCTCTA 59.764 50.000 0.00 0.00 0.00 2.43
338 339 3.307480 GGGGTCTGCTAAAGTTGCTCTAA 60.307 47.826 0.00 0.00 0.00 2.10
339 340 3.935828 GGGTCTGCTAAAGTTGCTCTAAG 59.064 47.826 0.00 0.00 0.00 2.18
340 341 3.935828 GGTCTGCTAAAGTTGCTCTAAGG 59.064 47.826 0.00 0.00 0.00 2.69
341 342 3.935828 GTCTGCTAAAGTTGCTCTAAGGG 59.064 47.826 0.00 0.00 0.00 3.95
355 356 0.830444 TAAGGGGGTCGATCCATCCG 60.830 60.000 18.43 0.00 36.58 4.18
361 362 0.597072 GGTCGATCCATCCGAGTACC 59.403 60.000 0.00 0.00 36.66 3.34
378 380 7.028361 CCGAGTACCTGCTTTTATACTATAGC 58.972 42.308 0.00 0.00 0.00 2.97
437 439 2.167900 CTCCCTCCGTCCGAAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
440 442 3.332034 CCTCCGTCCGAAATTACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
441 443 4.497300 CCTCCGTCCGAAATTACTTGTTA 58.503 43.478 0.00 0.00 0.00 2.41
442 444 5.114081 CCTCCGTCCGAAATTACTTGTTAT 58.886 41.667 0.00 0.00 0.00 1.89
446 448 8.188531 TCCGTCCGAAATTACTTGTTATAAAG 57.811 34.615 0.00 0.00 0.00 1.85
447 449 7.818930 TCCGTCCGAAATTACTTGTTATAAAGT 59.181 33.333 0.00 0.00 42.89 2.66
531 535 5.895534 AGTAATTTCGGATGGAGGTAGTACA 59.104 40.000 2.06 0.00 0.00 2.90
532 536 4.939052 ATTTCGGATGGAGGTAGTACAG 57.061 45.455 2.06 0.00 0.00 2.74
537 541 3.564644 CGGATGGAGGTAGTACAGTGTAG 59.435 52.174 2.39 0.00 0.00 2.74
559 563 1.066430 ACTCCACACTGAAACACGTGT 60.066 47.619 17.22 17.22 44.57 4.49
593 597 1.228124 CAGGGCCGTTCCAAGAACA 60.228 57.895 0.00 0.00 36.21 3.18
642 646 8.930760 CAGGTAAGAATAAGATGCATTAGTAGC 58.069 37.037 0.00 0.00 0.00 3.58
694 698 3.155501 ACTGGTTCTTCTACACGTAGCT 58.844 45.455 0.00 0.00 33.32 3.32
732 736 6.873076 TGTTTTCACTTTGGAAATCATATGCC 59.127 34.615 0.00 0.00 36.71 4.40
734 738 6.795144 TTCACTTTGGAAATCATATGCCAT 57.205 33.333 0.00 0.00 0.00 4.40
765 772 1.933181 CACTGCACGTTCAGAAGACAA 59.067 47.619 22.14 0.00 37.51 3.18
766 773 2.033407 CACTGCACGTTCAGAAGACAAG 60.033 50.000 22.14 0.00 37.51 3.16
767 774 2.159099 ACTGCACGTTCAGAAGACAAGA 60.159 45.455 22.14 0.00 37.51 3.02
768 775 2.473816 TGCACGTTCAGAAGACAAGAG 58.526 47.619 0.00 0.00 0.00 2.85
769 776 2.159099 TGCACGTTCAGAAGACAAGAGT 60.159 45.455 0.00 0.00 0.00 3.24
770 777 2.219674 GCACGTTCAGAAGACAAGAGTG 59.780 50.000 0.00 0.00 0.00 3.51
771 778 3.706698 CACGTTCAGAAGACAAGAGTGA 58.293 45.455 0.00 0.00 0.00 3.41
772 779 4.302455 CACGTTCAGAAGACAAGAGTGAT 58.698 43.478 0.00 0.00 0.00 3.06
773 780 4.149571 CACGTTCAGAAGACAAGAGTGATG 59.850 45.833 0.00 0.00 0.00 3.07
774 781 3.677121 CGTTCAGAAGACAAGAGTGATGG 59.323 47.826 0.00 0.00 0.00 3.51
839 886 5.305644 ACGGATGATTTATGTAGAGCCTTCT 59.694 40.000 0.00 0.00 37.46 2.85
926 991 3.367703 GCTTAATTGCACTTCACAGCCAT 60.368 43.478 0.00 0.00 0.00 4.40
953 1018 3.886505 ACAACGCAAACAATCTCCCTAAA 59.113 39.130 0.00 0.00 0.00 1.85
955 1020 4.965119 ACGCAAACAATCTCCCTAAATC 57.035 40.909 0.00 0.00 0.00 2.17
970 1035 0.538977 AAATCACAGTGCAGCAGCCT 60.539 50.000 0.00 0.00 41.13 4.58
971 1036 0.959372 AATCACAGTGCAGCAGCCTC 60.959 55.000 0.00 0.00 41.13 4.70
972 1037 1.839148 ATCACAGTGCAGCAGCCTCT 61.839 55.000 0.00 0.00 41.13 3.69
973 1038 2.032223 ACAGTGCAGCAGCCTCTG 59.968 61.111 17.13 17.13 42.91 3.35
974 1039 2.746671 CAGTGCAGCAGCCTCTGG 60.747 66.667 12.96 0.00 41.13 3.86
975 1040 3.247648 AGTGCAGCAGCCTCTGGT 61.248 61.111 0.00 0.00 43.33 4.00
1221 1291 1.213013 CCAGAAGCGCGTCTACACT 59.787 57.895 25.28 0.34 0.00 3.55
1337 1407 1.580845 CCTGGCTTCGTTGGCAAGAG 61.581 60.000 0.00 0.16 41.92 2.85
1375 1445 2.185310 GAAGGAGAAGGCCGCCAAGA 62.185 60.000 13.15 0.00 37.17 3.02
1411 1481 1.731720 CTTCAAGAAGGAGAAGGCCG 58.268 55.000 0.00 0.00 38.03 6.13
1412 1482 0.321653 TTCAAGAAGGAGAAGGCCGC 60.322 55.000 0.00 0.00 0.00 6.53
1413 1483 1.746991 CAAGAAGGAGAAGGCCGCC 60.747 63.158 0.00 0.00 34.63 6.13
1414 1484 2.224159 AAGAAGGAGAAGGCCGCCA 61.224 57.895 13.15 0.00 37.17 5.69
1415 1485 1.779061 AAGAAGGAGAAGGCCGCCAA 61.779 55.000 13.15 0.00 37.17 4.52
1416 1486 1.746991 GAAGGAGAAGGCCGCCAAG 60.747 63.158 13.15 0.00 37.17 3.61
1417 1487 2.185310 GAAGGAGAAGGCCGCCAAGA 62.185 60.000 13.15 0.00 37.17 3.02
1418 1488 2.436824 GGAGAAGGCCGCCAAGAC 60.437 66.667 13.15 0.13 34.56 3.01
1419 1489 2.815647 GAGAAGGCCGCCAAGACG 60.816 66.667 13.15 0.00 0.00 4.18
1441 1511 4.910956 CGGCATCGTCCTTCAAGA 57.089 55.556 0.00 0.00 0.00 3.02
1442 1512 3.137484 CGGCATCGTCCTTCAAGAA 57.863 52.632 0.00 0.00 0.00 2.52
1443 1513 1.002366 CGGCATCGTCCTTCAAGAAG 58.998 55.000 2.83 2.83 38.14 2.85
1453 1523 1.731720 CTTCAAGAAGGAGAAGGCCG 58.268 55.000 0.00 0.00 38.03 6.13
1454 1524 0.321653 TTCAAGAAGGAGAAGGCCGC 60.322 55.000 0.00 0.00 0.00 6.53
1455 1525 1.746991 CAAGAAGGAGAAGGCCGCC 60.747 63.158 0.00 0.00 34.63 6.13
1456 1526 2.224159 AAGAAGGAGAAGGCCGCCA 61.224 57.895 13.15 0.00 37.17 5.69
1457 1527 1.779061 AAGAAGGAGAAGGCCGCCAA 61.779 55.000 13.15 0.00 37.17 4.52
1458 1528 1.746991 GAAGGAGAAGGCCGCCAAG 60.747 63.158 13.15 0.00 37.17 3.61
1459 1529 2.185310 GAAGGAGAAGGCCGCCAAGA 62.185 60.000 13.15 0.00 37.17 3.02
1460 1530 2.436824 GGAGAAGGCCGCCAAGAC 60.437 66.667 13.15 0.13 34.56 3.01
1461 1531 2.815647 GAGAAGGCCGCCAAGACG 60.816 66.667 13.15 0.00 0.00 4.18
1483 1553 4.910956 CGGCATCGTCCTTCAAGA 57.089 55.556 0.00 0.00 0.00 3.02
1484 1554 3.137484 CGGCATCGTCCTTCAAGAA 57.863 52.632 0.00 0.00 0.00 2.52
1485 1555 1.002366 CGGCATCGTCCTTCAAGAAG 58.998 55.000 2.83 2.83 38.14 2.85
1525 1595 2.885644 CGGCATCGTCCGTCAAGG 60.886 66.667 5.59 0.00 44.18 3.61
1538 1608 0.041982 GTCAAGGAGGAGGAGGAGGT 59.958 60.000 0.00 0.00 0.00 3.85
1540 1610 1.306568 AAGGAGGAGGAGGAGGTGC 60.307 63.158 0.00 0.00 0.00 5.01
1546 1622 2.040278 AGGAGGAGGTGCAGGAGG 59.960 66.667 0.00 0.00 0.00 4.30
1670 1749 3.423154 GGTGACGAAGCTTGCGGG 61.423 66.667 2.10 0.00 0.00 6.13
1844 1923 4.817318 AAAAAGATCGCTCTCCTCTCTT 57.183 40.909 0.00 0.00 0.00 2.85
1845 1924 4.817318 AAAAGATCGCTCTCCTCTCTTT 57.183 40.909 0.00 0.00 37.67 2.52
1846 1925 4.817318 AAAGATCGCTCTCCTCTCTTTT 57.183 40.909 0.00 0.00 33.56 2.27
1847 1926 4.817318 AAGATCGCTCTCCTCTCTTTTT 57.183 40.909 0.00 0.00 0.00 1.94
1883 1962 4.817318 AAAAAGATCGCTCTCCTCTCTT 57.183 40.909 0.00 0.00 0.00 2.85
1884 1963 4.817318 AAAAGATCGCTCTCCTCTCTTT 57.183 40.909 0.00 0.00 37.67 2.52
1885 1964 4.817318 AAAGATCGCTCTCCTCTCTTTT 57.183 40.909 0.00 0.00 33.56 2.27
1886 1965 4.817318 AAGATCGCTCTCCTCTCTTTTT 57.183 40.909 0.00 0.00 0.00 1.94
1984 2063 3.781341 TGTTCGTGAAATCTTACGTGC 57.219 42.857 0.00 0.00 40.87 5.34
2061 2142 9.533253 CACTTGACTGAAAATTTGGTTAAATCT 57.467 29.630 0.00 0.00 35.50 2.40
2131 2212 6.676456 GCTCTGACCTCGTAATCGTAAGTAAA 60.676 42.308 0.00 0.00 38.33 2.01
2185 2269 7.621796 ACCGATATACTTGTTCCTTTTCTTCT 58.378 34.615 0.00 0.00 0.00 2.85
2186 2270 8.101419 ACCGATATACTTGTTCCTTTTCTTCTT 58.899 33.333 0.00 0.00 0.00 2.52
2187 2271 8.947115 CCGATATACTTGTTCCTTTTCTTCTTT 58.053 33.333 0.00 0.00 0.00 2.52
2324 2440 3.881688 TCCGGAGTAGTGTTGCTATACTC 59.118 47.826 0.00 0.32 43.00 2.59
2430 6765 5.210430 TCTATGTGACCGACCCCTAAATTA 58.790 41.667 0.00 0.00 0.00 1.40
2659 7015 6.954487 AGGTTCGTAGATTTGGAAAAAGTT 57.046 33.333 0.00 0.00 35.04 2.66
2733 7092 7.254137 TGAATTCAAAACAGTTCGTGAATTGA 58.746 30.769 27.24 21.31 45.85 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.838271 TCCTCGCCGGAGATGCAC 61.838 66.667 8.83 0.00 43.27 4.57
7 8 2.043349 TCAATCCTCCTCGCCGGA 60.043 61.111 5.05 0.00 40.30 5.14
8 9 2.419198 CTCAATCCTCCTCGCCGG 59.581 66.667 0.00 0.00 0.00 6.13
9 10 2.279784 GCTCAATCCTCCTCGCCG 60.280 66.667 0.00 0.00 0.00 6.46
10 11 2.279784 CGCTCAATCCTCCTCGCC 60.280 66.667 0.00 0.00 0.00 5.54
11 12 1.590259 GACGCTCAATCCTCCTCGC 60.590 63.158 0.00 0.00 0.00 5.03
12 13 1.066587 GGACGCTCAATCCTCCTCG 59.933 63.158 0.00 0.00 33.03 4.63
13 14 1.066587 CGGACGCTCAATCCTCCTC 59.933 63.158 0.00 0.00 33.70 3.71
14 15 2.427245 CCGGACGCTCAATCCTCCT 61.427 63.158 0.00 0.00 33.70 3.69
15 16 2.107141 CCGGACGCTCAATCCTCC 59.893 66.667 0.00 0.00 33.70 4.30
16 17 2.586357 GCCGGACGCTCAATCCTC 60.586 66.667 5.05 0.00 33.70 3.71
32 33 4.148825 ATGACGCCGTGGAGGAGC 62.149 66.667 0.00 0.00 44.30 4.70
33 34 2.105128 GATGACGCCGTGGAGGAG 59.895 66.667 0.00 0.00 45.00 3.69
34 35 3.458163 GGATGACGCCGTGGAGGA 61.458 66.667 0.00 0.00 45.00 3.71
35 36 3.723235 CTGGATGACGCCGTGGAGG 62.723 68.421 0.00 0.00 44.97 4.30
36 37 2.202797 CTGGATGACGCCGTGGAG 60.203 66.667 0.00 0.00 0.00 3.86
37 38 2.107041 AAACTGGATGACGCCGTGGA 62.107 55.000 0.00 0.00 0.00 4.02
38 39 1.671054 AAACTGGATGACGCCGTGG 60.671 57.895 0.00 0.00 0.00 4.94
39 40 1.497278 CAAACTGGATGACGCCGTG 59.503 57.895 0.00 0.00 0.00 4.94
40 41 2.325082 GCAAACTGGATGACGCCGT 61.325 57.895 0.00 0.00 0.00 5.68
41 42 2.480555 GCAAACTGGATGACGCCG 59.519 61.111 0.00 0.00 0.00 6.46
42 43 2.877691 GGCAAACTGGATGACGCC 59.122 61.111 0.00 0.00 0.00 5.68
43 44 2.480555 CGGCAAACTGGATGACGC 59.519 61.111 0.00 0.00 43.14 5.19
45 46 0.387239 GTTGCGGCAAACTGGATGAC 60.387 55.000 18.23 0.00 0.00 3.06
46 47 1.523154 GGTTGCGGCAAACTGGATGA 61.523 55.000 22.87 0.00 0.00 2.92
47 48 1.080569 GGTTGCGGCAAACTGGATG 60.081 57.895 22.87 0.00 0.00 3.51
48 49 1.228552 AGGTTGCGGCAAACTGGAT 60.229 52.632 30.84 8.49 40.17 3.41
49 50 1.896660 GAGGTTGCGGCAAACTGGA 60.897 57.895 35.65 1.09 41.88 3.86
50 51 2.644992 GAGGTTGCGGCAAACTGG 59.355 61.111 35.65 0.00 41.88 4.00
51 52 2.252260 CGAGGTTGCGGCAAACTG 59.748 61.111 35.65 22.95 41.88 3.16
52 53 3.660111 GCGAGGTTGCGGCAAACT 61.660 61.111 31.71 31.71 44.76 2.66
64 65 4.933064 GATCTGACGGCGGCGAGG 62.933 72.222 38.93 24.39 0.00 4.63
65 66 4.933064 GGATCTGACGGCGGCGAG 62.933 72.222 38.93 25.22 0.00 5.03
69 70 4.570663 GGTCGGATCTGACGGCGG 62.571 72.222 24.89 0.00 39.83 6.13
70 71 4.570663 GGGTCGGATCTGACGGCG 62.571 72.222 24.89 4.80 39.83 6.46
71 72 4.222847 GGGGTCGGATCTGACGGC 62.223 72.222 24.89 14.01 39.83 5.68
72 73 2.635787 TAGGGGGTCGGATCTGACGG 62.636 65.000 24.89 0.00 39.83 4.79
73 74 1.152819 TAGGGGGTCGGATCTGACG 60.153 63.158 24.89 6.08 39.83 4.35
74 75 0.106116 ACTAGGGGGTCGGATCTGAC 60.106 60.000 24.13 24.13 38.17 3.51
75 76 1.144503 GTACTAGGGGGTCGGATCTGA 59.855 57.143 0.00 0.00 0.00 3.27
76 77 1.145325 AGTACTAGGGGGTCGGATCTG 59.855 57.143 0.00 0.00 0.00 2.90
77 78 1.532038 AGTACTAGGGGGTCGGATCT 58.468 55.000 0.00 0.00 0.00 2.75
78 79 2.374839 ACTAGTACTAGGGGGTCGGATC 59.625 54.545 29.05 0.00 37.49 3.36
79 80 2.426844 ACTAGTACTAGGGGGTCGGAT 58.573 52.381 29.05 6.48 37.49 4.18
80 81 1.898863 ACTAGTACTAGGGGGTCGGA 58.101 55.000 29.05 0.00 37.49 4.55
81 82 2.744352 AACTAGTACTAGGGGGTCGG 57.256 55.000 29.05 7.31 37.49 4.79
82 83 4.035675 CGTTAAACTAGTACTAGGGGGTCG 59.964 50.000 29.05 22.42 37.49 4.79
83 84 4.950475 ACGTTAAACTAGTACTAGGGGGTC 59.050 45.833 29.05 16.71 37.49 4.46
84 85 4.935578 ACGTTAAACTAGTACTAGGGGGT 58.064 43.478 29.05 16.45 37.49 4.95
85 86 6.122964 ACTACGTTAAACTAGTACTAGGGGG 58.877 44.000 29.05 15.93 37.49 5.40
86 87 8.778358 CATACTACGTTAAACTAGTACTAGGGG 58.222 40.741 29.05 15.35 37.49 4.79
87 88 9.331282 ACATACTACGTTAAACTAGTACTAGGG 57.669 37.037 29.05 15.07 37.49 3.53
101 102 9.881649 AGCATAGCTATACTACATACTACGTTA 57.118 33.333 5.77 0.00 36.99 3.18
102 103 8.789825 AGCATAGCTATACTACATACTACGTT 57.210 34.615 5.77 0.00 36.99 3.99
103 104 8.666573 CAAGCATAGCTATACTACATACTACGT 58.333 37.037 5.77 0.00 38.25 3.57
104 105 8.666573 ACAAGCATAGCTATACTACATACTACG 58.333 37.037 5.77 0.00 38.25 3.51
107 108 9.742144 ACTACAAGCATAGCTATACTACATACT 57.258 33.333 5.77 0.00 38.25 2.12
110 111 9.698309 CAAACTACAAGCATAGCTATACTACAT 57.302 33.333 5.77 0.00 38.25 2.29
111 112 8.692710 ACAAACTACAAGCATAGCTATACTACA 58.307 33.333 5.77 0.00 38.25 2.74
112 113 9.530633 AACAAACTACAAGCATAGCTATACTAC 57.469 33.333 5.77 0.00 38.25 2.73
113 114 9.529325 CAACAAACTACAAGCATAGCTATACTA 57.471 33.333 5.77 0.00 38.25 1.82
114 115 8.258007 TCAACAAACTACAAGCATAGCTATACT 58.742 33.333 5.77 2.81 38.25 2.12
115 116 8.420374 TCAACAAACTACAAGCATAGCTATAC 57.580 34.615 5.77 0.00 38.25 1.47
116 117 9.261180 GATCAACAAACTACAAGCATAGCTATA 57.739 33.333 5.77 0.00 38.25 1.31
117 118 7.770433 TGATCAACAAACTACAAGCATAGCTAT 59.230 33.333 0.00 0.00 38.25 2.97
118 119 7.102993 TGATCAACAAACTACAAGCATAGCTA 58.897 34.615 0.00 0.00 38.25 3.32
119 120 5.939883 TGATCAACAAACTACAAGCATAGCT 59.060 36.000 0.00 0.00 42.56 3.32
120 121 6.182039 TGATCAACAAACTACAAGCATAGC 57.818 37.500 0.00 0.00 0.00 2.97
121 122 7.755591 ACATGATCAACAAACTACAAGCATAG 58.244 34.615 0.00 0.00 0.00 2.23
122 123 7.686438 ACATGATCAACAAACTACAAGCATA 57.314 32.000 0.00 0.00 0.00 3.14
123 124 6.579666 ACATGATCAACAAACTACAAGCAT 57.420 33.333 0.00 0.00 0.00 3.79
124 125 7.503521 TTACATGATCAACAAACTACAAGCA 57.496 32.000 0.00 0.00 0.00 3.91
125 126 8.236586 TCATTACATGATCAACAAACTACAAGC 58.763 33.333 0.00 0.00 33.59 4.01
127 128 9.891828 GTTCATTACATGATCAACAAACTACAA 57.108 29.630 0.00 0.00 39.39 2.41
128 129 9.283768 AGTTCATTACATGATCAACAAACTACA 57.716 29.630 0.00 0.00 39.39 2.74
155 156 9.890629 ACAAACATAGTTCATCACATACTACAT 57.109 29.630 0.00 0.00 0.00 2.29
156 157 9.150348 CACAAACATAGTTCATCACATACTACA 57.850 33.333 0.00 0.00 0.00 2.74
157 158 8.116753 GCACAAACATAGTTCATCACATACTAC 58.883 37.037 0.00 0.00 0.00 2.73
158 159 7.821846 TGCACAAACATAGTTCATCACATACTA 59.178 33.333 0.00 0.00 0.00 1.82
159 160 6.654582 TGCACAAACATAGTTCATCACATACT 59.345 34.615 0.00 0.00 0.00 2.12
160 161 6.841119 TGCACAAACATAGTTCATCACATAC 58.159 36.000 0.00 0.00 0.00 2.39
161 162 7.446001 TTGCACAAACATAGTTCATCACATA 57.554 32.000 0.00 0.00 0.00 2.29
162 163 5.963176 TGCACAAACATAGTTCATCACAT 57.037 34.783 0.00 0.00 0.00 3.21
163 164 5.764487 TTGCACAAACATAGTTCATCACA 57.236 34.783 0.00 0.00 0.00 3.58
164 165 7.596248 AGAAATTGCACAAACATAGTTCATCAC 59.404 33.333 0.00 0.00 0.00 3.06
165 166 7.660112 AGAAATTGCACAAACATAGTTCATCA 58.340 30.769 0.00 0.00 0.00 3.07
166 167 7.274250 GGAGAAATTGCACAAACATAGTTCATC 59.726 37.037 0.00 0.00 0.00 2.92
167 168 7.092716 GGAGAAATTGCACAAACATAGTTCAT 58.907 34.615 0.00 0.00 0.00 2.57
168 169 6.446318 GGAGAAATTGCACAAACATAGTTCA 58.554 36.000 0.00 0.00 0.00 3.18
169 170 5.863935 GGGAGAAATTGCACAAACATAGTTC 59.136 40.000 0.00 0.00 0.00 3.01
170 171 5.564651 CGGGAGAAATTGCACAAACATAGTT 60.565 40.000 0.00 0.00 0.00 2.24
171 172 4.082787 CGGGAGAAATTGCACAAACATAGT 60.083 41.667 0.00 0.00 0.00 2.12
172 173 4.414852 CGGGAGAAATTGCACAAACATAG 58.585 43.478 0.00 0.00 0.00 2.23
173 174 3.366883 GCGGGAGAAATTGCACAAACATA 60.367 43.478 0.00 0.00 0.00 2.29
174 175 2.610232 GCGGGAGAAATTGCACAAACAT 60.610 45.455 0.00 0.00 0.00 2.71
175 176 1.269517 GCGGGAGAAATTGCACAAACA 60.270 47.619 0.00 0.00 0.00 2.83
176 177 1.418373 GCGGGAGAAATTGCACAAAC 58.582 50.000 0.00 0.00 0.00 2.93
177 178 0.039617 CGCGGGAGAAATTGCACAAA 60.040 50.000 0.00 0.00 0.00 2.83
178 179 0.886938 TCGCGGGAGAAATTGCACAA 60.887 50.000 6.13 0.00 0.00 3.33
179 180 0.886938 TTCGCGGGAGAAATTGCACA 60.887 50.000 6.13 0.00 0.00 4.57
180 181 0.239879 TTTCGCGGGAGAAATTGCAC 59.760 50.000 6.13 0.00 35.44 4.57
181 182 0.521291 CTTTCGCGGGAGAAATTGCA 59.479 50.000 6.13 0.00 39.13 4.08
182 183 0.521735 ACTTTCGCGGGAGAAATTGC 59.478 50.000 6.13 0.00 39.13 3.56
183 184 4.616181 AATACTTTCGCGGGAGAAATTG 57.384 40.909 6.13 0.00 39.13 2.32
184 185 5.638596 AAAATACTTTCGCGGGAGAAATT 57.361 34.783 6.13 7.54 39.13 1.82
185 186 5.638596 AAAAATACTTTCGCGGGAGAAAT 57.361 34.783 6.13 1.82 39.13 2.17
205 206 9.781834 CGTATCTAAACCTGCATAATTTGAAAA 57.218 29.630 0.00 0.00 0.00 2.29
206 207 8.402472 CCGTATCTAAACCTGCATAATTTGAAA 58.598 33.333 0.00 0.00 0.00 2.69
207 208 7.012894 CCCGTATCTAAACCTGCATAATTTGAA 59.987 37.037 0.00 0.00 0.00 2.69
208 209 6.485313 CCCGTATCTAAACCTGCATAATTTGA 59.515 38.462 0.00 0.00 0.00 2.69
209 210 6.262273 ACCCGTATCTAAACCTGCATAATTTG 59.738 38.462 0.00 0.00 0.00 2.32
210 211 6.362248 ACCCGTATCTAAACCTGCATAATTT 58.638 36.000 0.00 0.00 0.00 1.82
211 212 5.937111 ACCCGTATCTAAACCTGCATAATT 58.063 37.500 0.00 0.00 0.00 1.40
212 213 5.562298 ACCCGTATCTAAACCTGCATAAT 57.438 39.130 0.00 0.00 0.00 1.28
213 214 5.129815 AGAACCCGTATCTAAACCTGCATAA 59.870 40.000 0.00 0.00 0.00 1.90
214 215 4.652421 AGAACCCGTATCTAAACCTGCATA 59.348 41.667 0.00 0.00 0.00 3.14
215 216 3.454812 AGAACCCGTATCTAAACCTGCAT 59.545 43.478 0.00 0.00 0.00 3.96
216 217 2.835764 AGAACCCGTATCTAAACCTGCA 59.164 45.455 0.00 0.00 0.00 4.41
217 218 3.195661 CAGAACCCGTATCTAAACCTGC 58.804 50.000 0.00 0.00 0.00 4.85
218 219 3.118738 AGCAGAACCCGTATCTAAACCTG 60.119 47.826 0.00 0.00 0.00 4.00
219 220 3.105283 AGCAGAACCCGTATCTAAACCT 58.895 45.455 0.00 0.00 0.00 3.50
220 221 3.455327 GAGCAGAACCCGTATCTAAACC 58.545 50.000 0.00 0.00 0.00 3.27
221 222 3.114065 CGAGCAGAACCCGTATCTAAAC 58.886 50.000 0.00 0.00 0.00 2.01
222 223 3.018856 TCGAGCAGAACCCGTATCTAAA 58.981 45.455 0.00 0.00 0.00 1.85
223 224 2.357009 GTCGAGCAGAACCCGTATCTAA 59.643 50.000 0.00 0.00 0.00 2.10
224 225 1.945394 GTCGAGCAGAACCCGTATCTA 59.055 52.381 0.00 0.00 0.00 1.98
225 226 0.739561 GTCGAGCAGAACCCGTATCT 59.260 55.000 0.00 0.00 0.00 1.98
226 227 0.248949 GGTCGAGCAGAACCCGTATC 60.249 60.000 10.30 0.00 0.00 2.24
227 228 1.814527 GGTCGAGCAGAACCCGTAT 59.185 57.895 10.30 0.00 0.00 3.06
228 229 2.693762 CGGTCGAGCAGAACCCGTA 61.694 63.158 15.89 0.00 34.81 4.02
229 230 4.052229 CGGTCGAGCAGAACCCGT 62.052 66.667 15.89 0.00 34.81 5.28
238 239 2.780149 AAAAACATGCGCGGTCGAGC 62.780 55.000 8.83 11.85 41.27 5.03
239 240 1.059657 CAAAAACATGCGCGGTCGAG 61.060 55.000 8.83 0.00 38.10 4.04
240 241 1.082431 CAAAAACATGCGCGGTCGA 60.082 52.632 8.83 0.00 38.10 4.20
241 242 1.082431 TCAAAAACATGCGCGGTCG 60.082 52.632 8.83 0.00 39.07 4.79
242 243 1.001745 GGTCAAAAACATGCGCGGTC 61.002 55.000 8.83 0.00 0.00 4.79
243 244 1.007849 GGTCAAAAACATGCGCGGT 60.008 52.632 8.83 0.00 0.00 5.68
244 245 1.732683 GGGTCAAAAACATGCGCGG 60.733 57.895 8.83 0.00 0.00 6.46
245 246 2.080062 CGGGTCAAAAACATGCGCG 61.080 57.895 0.00 0.00 0.00 6.86
246 247 2.371923 GCGGGTCAAAAACATGCGC 61.372 57.895 0.00 0.00 0.00 6.09
247 248 0.596083 TTGCGGGTCAAAAACATGCG 60.596 50.000 0.00 0.00 33.56 4.73
248 249 1.260297 GTTTGCGGGTCAAAAACATGC 59.740 47.619 0.00 0.00 45.35 4.06
249 250 1.520590 CGTTTGCGGGTCAAAAACATG 59.479 47.619 0.00 0.00 45.35 3.21
250 251 1.846541 CGTTTGCGGGTCAAAAACAT 58.153 45.000 0.00 0.00 45.35 2.71
251 252 0.802607 GCGTTTGCGGGTCAAAAACA 60.803 50.000 0.00 0.00 45.35 2.83
252 253 1.921475 GCGTTTGCGGGTCAAAAAC 59.079 52.632 0.00 0.00 45.35 2.43
253 254 4.403976 GCGTTTGCGGGTCAAAAA 57.596 50.000 0.00 0.00 45.35 1.94
263 264 0.162933 TTGACGAAGATCGCGTTTGC 59.837 50.000 15.87 6.34 45.12 3.68
264 265 2.222624 GTTTGACGAAGATCGCGTTTG 58.777 47.619 15.87 0.00 45.12 2.93
265 266 1.193874 GGTTTGACGAAGATCGCGTTT 59.806 47.619 15.87 0.00 45.12 3.60
266 267 0.788391 GGTTTGACGAAGATCGCGTT 59.212 50.000 15.87 0.00 45.12 4.84
267 268 1.342082 CGGTTTGACGAAGATCGCGT 61.342 55.000 14.93 14.93 45.12 6.01
268 269 1.340465 CGGTTTGACGAAGATCGCG 59.660 57.895 0.00 0.00 45.12 5.87
269 270 1.058903 GCGGTTTGACGAAGATCGC 59.941 57.895 0.00 0.00 45.12 4.58
270 271 0.787787 TTGCGGTTTGACGAAGATCG 59.212 50.000 0.00 0.00 46.93 3.69
271 272 2.571206 GTTTGCGGTTTGACGAAGATC 58.429 47.619 0.00 0.00 35.47 2.75
272 273 1.070175 CGTTTGCGGTTTGACGAAGAT 60.070 47.619 0.00 0.00 37.69 2.40
273 274 0.302288 CGTTTGCGGTTTGACGAAGA 59.698 50.000 0.00 0.00 37.69 2.87
274 275 1.259544 GCGTTTGCGGTTTGACGAAG 61.260 55.000 0.00 0.00 37.69 3.79
275 276 1.297745 GCGTTTGCGGTTTGACGAA 60.298 52.632 0.00 0.00 37.69 3.85
276 277 2.325166 GCGTTTGCGGTTTGACGA 59.675 55.556 0.00 0.00 37.69 4.20
292 293 0.110101 AAATACGACCCGCAAAACGC 60.110 50.000 0.00 0.00 41.76 4.84
293 294 2.319241 AAAATACGACCCGCAAAACG 57.681 45.000 0.00 0.00 43.15 3.60
294 295 2.154198 GCAAAAATACGACCCGCAAAAC 59.846 45.455 0.00 0.00 0.00 2.43
295 296 2.395654 GCAAAAATACGACCCGCAAAA 58.604 42.857 0.00 0.00 0.00 2.44
296 297 1.663445 CGCAAAAATACGACCCGCAAA 60.663 47.619 0.00 0.00 0.00 3.68
297 298 0.110147 CGCAAAAATACGACCCGCAA 60.110 50.000 0.00 0.00 0.00 4.85
298 299 1.498166 CGCAAAAATACGACCCGCA 59.502 52.632 0.00 0.00 0.00 5.69
299 300 1.226184 CCGCAAAAATACGACCCGC 60.226 57.895 0.00 0.00 0.00 6.13
300 301 1.426223 CCCGCAAAAATACGACCCG 59.574 57.895 0.00 0.00 0.00 5.28
301 302 0.961857 ACCCCGCAAAAATACGACCC 60.962 55.000 0.00 0.00 0.00 4.46
302 303 0.448990 GACCCCGCAAAAATACGACC 59.551 55.000 0.00 0.00 0.00 4.79
303 304 1.129811 CAGACCCCGCAAAAATACGAC 59.870 52.381 0.00 0.00 0.00 4.34
304 305 1.444836 CAGACCCCGCAAAAATACGA 58.555 50.000 0.00 0.00 0.00 3.43
305 306 0.179174 GCAGACCCCGCAAAAATACG 60.179 55.000 0.00 0.00 0.00 3.06
306 307 1.173913 AGCAGACCCCGCAAAAATAC 58.826 50.000 0.00 0.00 0.00 1.89
307 308 2.791347 TAGCAGACCCCGCAAAAATA 57.209 45.000 0.00 0.00 0.00 1.40
308 309 1.917872 TTAGCAGACCCCGCAAAAAT 58.082 45.000 0.00 0.00 0.00 1.82
309 310 1.611491 CTTTAGCAGACCCCGCAAAAA 59.389 47.619 0.00 0.00 0.00 1.94
310 311 1.243902 CTTTAGCAGACCCCGCAAAA 58.756 50.000 0.00 0.00 0.00 2.44
311 312 0.109723 ACTTTAGCAGACCCCGCAAA 59.890 50.000 0.00 0.00 0.00 3.68
312 313 0.109723 AACTTTAGCAGACCCCGCAA 59.890 50.000 0.00 0.00 0.00 4.85
313 314 0.605319 CAACTTTAGCAGACCCCGCA 60.605 55.000 0.00 0.00 0.00 5.69
314 315 1.923227 GCAACTTTAGCAGACCCCGC 61.923 60.000 0.00 0.00 0.00 6.13
315 316 0.321653 AGCAACTTTAGCAGACCCCG 60.322 55.000 0.00 0.00 0.00 5.73
316 317 1.003696 AGAGCAACTTTAGCAGACCCC 59.996 52.381 0.00 0.00 0.00 4.95
317 318 2.481289 AGAGCAACTTTAGCAGACCC 57.519 50.000 0.00 0.00 0.00 4.46
318 319 3.935828 CCTTAGAGCAACTTTAGCAGACC 59.064 47.826 0.00 0.00 0.00 3.85
319 320 3.935828 CCCTTAGAGCAACTTTAGCAGAC 59.064 47.826 0.00 0.00 0.00 3.51
320 321 3.055094 CCCCTTAGAGCAACTTTAGCAGA 60.055 47.826 0.00 0.00 0.00 4.26
321 322 3.274288 CCCCTTAGAGCAACTTTAGCAG 58.726 50.000 0.00 0.00 0.00 4.24
322 323 2.026262 CCCCCTTAGAGCAACTTTAGCA 60.026 50.000 0.00 0.00 0.00 3.49
323 324 2.026169 ACCCCCTTAGAGCAACTTTAGC 60.026 50.000 0.00 0.00 0.00 3.09
324 325 3.679083 CGACCCCCTTAGAGCAACTTTAG 60.679 52.174 0.00 0.00 0.00 1.85
325 326 2.235402 CGACCCCCTTAGAGCAACTTTA 59.765 50.000 0.00 0.00 0.00 1.85
326 327 1.003233 CGACCCCCTTAGAGCAACTTT 59.997 52.381 0.00 0.00 0.00 2.66
327 328 0.613777 CGACCCCCTTAGAGCAACTT 59.386 55.000 0.00 0.00 0.00 2.66
328 329 0.252103 TCGACCCCCTTAGAGCAACT 60.252 55.000 0.00 0.00 0.00 3.16
329 330 0.831307 ATCGACCCCCTTAGAGCAAC 59.169 55.000 0.00 0.00 0.00 4.17
330 331 1.120530 GATCGACCCCCTTAGAGCAA 58.879 55.000 0.00 0.00 0.00 3.91
331 332 0.759436 GGATCGACCCCCTTAGAGCA 60.759 60.000 0.00 0.00 0.00 4.26
332 333 0.759436 TGGATCGACCCCCTTAGAGC 60.759 60.000 0.00 0.00 38.00 4.09
333 334 1.896465 GATGGATCGACCCCCTTAGAG 59.104 57.143 0.00 0.00 38.00 2.43
334 335 1.482553 GGATGGATCGACCCCCTTAGA 60.483 57.143 0.00 0.00 38.00 2.10
335 336 0.977395 GGATGGATCGACCCCCTTAG 59.023 60.000 0.00 0.00 38.00 2.18
336 337 0.830444 CGGATGGATCGACCCCCTTA 60.830 60.000 0.00 0.00 38.00 2.69
337 338 2.140792 CGGATGGATCGACCCCCTT 61.141 63.158 0.00 0.00 38.00 3.95
338 339 2.524394 CGGATGGATCGACCCCCT 60.524 66.667 0.00 0.00 38.00 4.79
339 340 2.523412 TCGGATGGATCGACCCCC 60.523 66.667 0.00 0.00 38.00 5.40
340 341 0.538977 TACTCGGATGGATCGACCCC 60.539 60.000 0.00 0.00 38.00 4.95
341 342 0.597072 GTACTCGGATGGATCGACCC 59.403 60.000 0.00 0.00 38.00 4.46
355 356 9.628746 GAAGCTATAGTATAAAAGCAGGTACTC 57.371 37.037 0.84 0.00 36.45 2.59
405 407 4.442472 CGGACGGAGGGAGTATTAAACATT 60.442 45.833 0.00 0.00 0.00 2.71
406 408 3.069158 CGGACGGAGGGAGTATTAAACAT 59.931 47.826 0.00 0.00 0.00 2.71
472 474 8.993121 AGATGGATGTTTCTATACGCATTTTAG 58.007 33.333 0.00 0.00 0.00 1.85
479 481 4.387256 GCAGAGATGGATGTTTCTATACGC 59.613 45.833 0.00 0.00 0.00 4.42
480 482 5.777802 AGCAGAGATGGATGTTTCTATACG 58.222 41.667 0.00 0.00 0.00 3.06
537 541 0.304705 CGTGTTTCAGTGTGGAGTGC 59.695 55.000 0.00 0.00 0.00 4.40
559 563 2.825532 GCCCTGCCTTTCTCAATGTAAA 59.174 45.455 0.00 0.00 0.00 2.01
593 597 0.676782 GTACGATGCACAAGCCCCTT 60.677 55.000 0.00 0.00 41.13 3.95
642 646 0.822532 GCATCAAGGGCCTCCATCAG 60.823 60.000 6.46 0.00 34.83 2.90
694 698 8.502387 CCAAAGTGAAAACAAAAACTGAAATGA 58.498 29.630 0.00 0.00 0.00 2.57
732 736 0.538584 TGCAGTGGAGAGGTGCTATG 59.461 55.000 0.00 0.00 38.09 2.23
734 738 1.877576 CGTGCAGTGGAGAGGTGCTA 61.878 60.000 0.00 0.00 38.09 3.49
740 747 0.315251 TCTGAACGTGCAGTGGAGAG 59.685 55.000 22.99 0.00 37.20 3.20
769 776 3.552068 CGTGTGACTTGTGAGTACCATCA 60.552 47.826 0.00 0.00 35.88 3.07
770 777 2.987149 CGTGTGACTTGTGAGTACCATC 59.013 50.000 0.00 0.00 35.88 3.51
771 778 2.288825 CCGTGTGACTTGTGAGTACCAT 60.289 50.000 0.00 0.00 35.88 3.55
772 779 1.067974 CCGTGTGACTTGTGAGTACCA 59.932 52.381 0.00 0.00 35.88 3.25
773 780 1.779569 CCGTGTGACTTGTGAGTACC 58.220 55.000 0.00 0.00 35.88 3.34
774 781 1.137513 GCCGTGTGACTTGTGAGTAC 58.862 55.000 0.00 0.00 35.88 2.73
839 886 1.339055 CGGGAGGCAAAACTCATGAGA 60.339 52.381 29.27 0.00 39.27 3.27
905 970 3.921119 TGGCTGTGAAGTGCAATTAAG 57.079 42.857 0.00 0.00 0.00 1.85
907 972 3.573538 ACAATGGCTGTGAAGTGCAATTA 59.426 39.130 0.00 0.00 36.69 1.40
926 991 3.488384 GGAGATTGTTTGCGTTGTGACAA 60.488 43.478 0.00 0.00 36.55 3.18
953 1018 1.376942 GAGGCTGCTGCACTGTGAT 60.377 57.895 17.89 0.00 41.91 3.06
955 1020 2.032223 AGAGGCTGCTGCACTGTG 59.968 61.111 17.89 2.76 41.91 3.66
970 1035 2.307768 ACTGAACTGAGACGAACCAGA 58.692 47.619 9.01 0.00 34.65 3.86
971 1036 2.802787 ACTGAACTGAGACGAACCAG 57.197 50.000 0.00 0.00 36.53 4.00
972 1037 2.543031 CGAACTGAACTGAGACGAACCA 60.543 50.000 0.00 0.00 0.00 3.67
973 1038 2.052157 CGAACTGAACTGAGACGAACC 58.948 52.381 0.00 0.00 0.00 3.62
974 1039 1.452399 GCGAACTGAACTGAGACGAAC 59.548 52.381 0.00 0.00 0.00 3.95
975 1040 1.602165 GGCGAACTGAACTGAGACGAA 60.602 52.381 0.00 0.00 0.00 3.85
1221 1291 3.515502 CCTTCATGTACTGGTCCTTGAGA 59.484 47.826 0.00 0.00 0.00 3.27
1393 1463 0.321653 GCGGCCTTCTCCTTCTTGAA 60.322 55.000 0.00 0.00 0.00 2.69
1424 1494 1.002366 CTTCTTGAAGGACGATGCCG 58.998 55.000 2.63 0.00 42.50 5.69
1425 1495 1.066143 TCCTTCTTGAAGGACGATGCC 60.066 52.381 23.69 0.00 43.68 4.40
1426 1496 2.093973 TCTCCTTCTTGAAGGACGATGC 60.094 50.000 23.69 0.00 43.68 3.91
1427 1497 3.876274 TCTCCTTCTTGAAGGACGATG 57.124 47.619 23.69 15.84 43.68 3.84
1428 1498 4.464069 CTTCTCCTTCTTGAAGGACGAT 57.536 45.455 23.69 0.00 43.68 3.73
1429 1499 3.944055 CTTCTCCTTCTTGAAGGACGA 57.056 47.619 23.69 20.73 43.68 4.20
1434 1504 1.731720 CGGCCTTCTCCTTCTTGAAG 58.268 55.000 0.00 3.55 39.32 3.02
1435 1505 0.321653 GCGGCCTTCTCCTTCTTGAA 60.322 55.000 0.00 0.00 0.00 2.69
1436 1506 1.296715 GCGGCCTTCTCCTTCTTGA 59.703 57.895 0.00 0.00 0.00 3.02
1437 1507 1.746991 GGCGGCCTTCTCCTTCTTG 60.747 63.158 12.87 0.00 0.00 3.02
1438 1508 1.779061 TTGGCGGCCTTCTCCTTCTT 61.779 55.000 21.46 0.00 0.00 2.52
1439 1509 2.190488 CTTGGCGGCCTTCTCCTTCT 62.190 60.000 21.46 0.00 0.00 2.85
1440 1510 1.746991 CTTGGCGGCCTTCTCCTTC 60.747 63.158 21.46 0.00 0.00 3.46
1441 1511 2.224159 TCTTGGCGGCCTTCTCCTT 61.224 57.895 21.46 0.00 0.00 3.36
1442 1512 2.607750 TCTTGGCGGCCTTCTCCT 60.608 61.111 21.46 0.00 0.00 3.69
1443 1513 2.436824 GTCTTGGCGGCCTTCTCC 60.437 66.667 21.46 0.53 0.00 3.71
1444 1514 2.815647 CGTCTTGGCGGCCTTCTC 60.816 66.667 21.46 7.58 0.00 2.87
1466 1536 1.002366 CTTCTTGAAGGACGATGCCG 58.998 55.000 2.63 0.00 42.50 5.69
1467 1537 1.066143 TCCTTCTTGAAGGACGATGCC 60.066 52.381 23.69 0.00 43.68 4.40
1468 1538 2.093973 TCTCCTTCTTGAAGGACGATGC 60.094 50.000 23.69 0.00 43.68 3.91
1469 1539 3.876274 TCTCCTTCTTGAAGGACGATG 57.124 47.619 23.69 15.84 43.68 3.84
1470 1540 4.464069 CTTCTCCTTCTTGAAGGACGAT 57.536 45.455 23.69 0.00 43.68 3.73
1471 1541 3.944055 CTTCTCCTTCTTGAAGGACGA 57.056 47.619 23.69 20.73 43.68 4.20
1476 1546 1.731720 CGGCCTTCTCCTTCTTGAAG 58.268 55.000 0.00 3.55 39.32 3.02
1477 1547 0.321653 GCGGCCTTCTCCTTCTTGAA 60.322 55.000 0.00 0.00 0.00 2.69
1478 1548 1.296715 GCGGCCTTCTCCTTCTTGA 59.703 57.895 0.00 0.00 0.00 3.02
1479 1549 1.746991 GGCGGCCTTCTCCTTCTTG 60.747 63.158 12.87 0.00 0.00 3.02
1480 1550 1.779061 TTGGCGGCCTTCTCCTTCTT 61.779 55.000 21.46 0.00 0.00 2.52
1481 1551 2.190488 CTTGGCGGCCTTCTCCTTCT 62.190 60.000 21.46 0.00 0.00 2.85
1482 1552 1.746991 CTTGGCGGCCTTCTCCTTC 60.747 63.158 21.46 0.00 0.00 3.46
1483 1553 2.224159 TCTTGGCGGCCTTCTCCTT 61.224 57.895 21.46 0.00 0.00 3.36
1484 1554 2.607750 TCTTGGCGGCCTTCTCCT 60.608 61.111 21.46 0.00 0.00 3.69
1485 1555 2.436824 GTCTTGGCGGCCTTCTCC 60.437 66.667 21.46 0.53 0.00 3.71
1486 1556 2.815647 CGTCTTGGCGGCCTTCTC 60.816 66.667 21.46 7.58 0.00 2.87
1525 1595 2.063378 CCTGCACCTCCTCCTCCTC 61.063 68.421 0.00 0.00 0.00 3.71
1670 1749 1.966493 CTGCACGCGTTCATACACCC 61.966 60.000 12.91 0.00 0.00 4.61
1862 1941 4.817318 AAGAGAGGAGAGCGATCTTTTT 57.183 40.909 3.92 0.00 0.00 1.94
1863 1942 4.817318 AAAGAGAGGAGAGCGATCTTTT 57.183 40.909 3.92 0.00 36.98 2.27
1864 1943 4.817318 AAAAGAGAGGAGAGCGATCTTT 57.183 40.909 3.92 0.00 40.87 2.52
1865 1944 4.817318 AAAAAGAGAGGAGAGCGATCTT 57.183 40.909 3.92 0.00 0.00 2.40
1906 1985 3.631250 AGAGAGAGGAGAGCGATCTTTT 58.369 45.455 3.92 0.00 0.00 2.27
1910 1989 4.385825 TCTAAAGAGAGAGGAGAGCGATC 58.614 47.826 0.00 0.00 0.00 3.69
2034 2115 9.313118 GATTTAACCAAATTTTCAGTCAAGTGT 57.687 29.630 0.00 0.00 34.44 3.55
2067 2148 9.362151 TGACTGGAATTTAACCAAGTCTTAATT 57.638 29.630 0.82 0.00 36.96 1.40
2078 2159 6.127897 CCATCTCAGTTGACTGGAATTTAACC 60.128 42.308 10.97 0.00 43.91 2.85
2079 2160 6.623767 GCCATCTCAGTTGACTGGAATTTAAC 60.624 42.308 10.97 0.00 43.91 2.01
2086 2167 0.615331 GGCCATCTCAGTTGACTGGA 59.385 55.000 10.97 7.78 43.91 3.86
2087 2168 0.742281 CGGCCATCTCAGTTGACTGG 60.742 60.000 2.24 0.00 43.91 4.00
2088 2169 1.364626 GCGGCCATCTCAGTTGACTG 61.365 60.000 2.24 4.77 45.08 3.51
2090 2171 1.078848 AGCGGCCATCTCAGTTGAC 60.079 57.895 2.24 0.00 0.00 3.18
2291 2407 3.374058 CACTACTCCGGATTTCGCAAAAT 59.626 43.478 3.57 0.00 37.80 1.82
2295 2411 0.892755 ACACTACTCCGGATTTCGCA 59.107 50.000 3.57 0.00 37.59 5.10
2384 2501 3.513912 TGGTAGTACAATCACAGTCCCAG 59.486 47.826 2.06 0.00 0.00 4.45
2385 2502 3.512496 TGGTAGTACAATCACAGTCCCA 58.488 45.455 2.06 0.00 0.00 4.37
2386 2503 4.406003 AGATGGTAGTACAATCACAGTCCC 59.594 45.833 18.12 0.00 0.00 4.46
2608 6943 6.976088 TCATCGCCATGAACTTTCTTAAAAA 58.024 32.000 0.00 0.00 35.99 1.94
2628 6965 7.141100 TCCAAATCTACGAACCTTTTTCATC 57.859 36.000 0.00 0.00 0.00 2.92
2760 7119 7.987458 ACTTCATGAACTTTTTCAGACTAGTGA 59.013 33.333 3.38 0.00 45.07 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.