Multiple sequence alignment - TraesCS1D01G336700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G336700 chr1D 100.000 3463 0 0 1 3463 426745821 426749283 0.000000e+00 6396.0
1 TraesCS1D01G336700 chr1A 90.909 2530 165 27 665 3177 521843852 521846333 0.000000e+00 3338.0
2 TraesCS1D01G336700 chr1A 89.892 277 27 1 3187 3463 521847644 521847919 4.250000e-94 355.0
3 TraesCS1D01G336700 chr1A 92.308 208 13 3 330 537 521843656 521843860 3.380000e-75 292.0
4 TraesCS1D01G336700 chr1B 91.653 1857 117 13 647 2468 576551622 576553475 0.000000e+00 2536.0
5 TraesCS1D01G336700 chr1B 92.208 231 15 3 2586 2813 576553531 576553761 1.200000e-84 324.0
6 TraesCS1D01G336700 chr1B 80.836 287 30 16 1 272 304386681 304386957 5.860000e-48 202.0
7 TraesCS1D01G336700 chr1B 90.625 128 11 1 330 457 576551286 576551412 5.940000e-38 169.0
8 TraesCS1D01G336700 chr5A 78.378 222 31 7 67 272 608657127 608657347 1.010000e-25 128.0
9 TraesCS1D01G336700 chr4D 83.168 101 16 1 10 109 432459112 432459012 1.320000e-14 91.6
10 TraesCS1D01G336700 chr7A 86.792 53 7 0 2906 2958 621504361 621504309 3.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G336700 chr1D 426745821 426749283 3462 False 6396.000000 6396 100.000000 1 3463 1 chr1D.!!$F1 3462
1 TraesCS1D01G336700 chr1A 521843656 521847919 4263 False 1328.333333 3338 91.036333 330 3463 3 chr1A.!!$F1 3133
2 TraesCS1D01G336700 chr1B 576551286 576553761 2475 False 1009.666667 2536 91.495333 330 2813 3 chr1B.!!$F2 2483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 969 0.035739 AAACGTACATCCCCAACGCT 59.964 50.0 0.0 0.0 40.18 5.07 F
1694 1792 0.035881 CAGAACAGAGGCAGCAGGAA 59.964 55.0 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 1868 0.036164 TCAACCCGGGACTCATTGTG 59.964 55.0 32.02 11.25 0.00 3.33 R
3022 3135 0.038892 GTCCAGCATGTTTGTGCCAG 60.039 55.0 0.00 0.00 46.19 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.126502 CCAATGCGGCGGTGTTTC 60.127 61.111 9.78 0.00 0.00 2.78
22 23 2.642129 CAATGCGGCGGTGTTTCA 59.358 55.556 9.78 0.00 0.00 2.69
23 24 1.729131 CAATGCGGCGGTGTTTCAC 60.729 57.895 9.78 0.00 0.00 3.18
35 36 3.537793 GTGTTTCACCTTGATTCCGAC 57.462 47.619 0.00 0.00 0.00 4.79
36 37 2.096417 GTGTTTCACCTTGATTCCGACG 60.096 50.000 0.00 0.00 0.00 5.12
37 38 2.224090 TGTTTCACCTTGATTCCGACGA 60.224 45.455 0.00 0.00 0.00 4.20
38 39 2.074547 TTCACCTTGATTCCGACGAC 57.925 50.000 0.00 0.00 0.00 4.34
39 40 0.109458 TCACCTTGATTCCGACGACG 60.109 55.000 0.00 0.00 39.43 5.12
58 59 4.760047 CGACAGGGGCTGAACGGG 62.760 72.222 0.00 0.00 35.18 5.28
66 67 4.704833 GCTGAACGGGCTGGCTGA 62.705 66.667 17.74 0.00 0.00 4.26
67 68 2.743928 CTGAACGGGCTGGCTGAC 60.744 66.667 17.74 10.47 0.00 3.51
68 69 4.680237 TGAACGGGCTGGCTGACG 62.680 66.667 17.74 6.93 0.00 4.35
76 77 3.357079 CTGGCTGACGGGCACAAC 61.357 66.667 6.40 0.00 45.79 3.32
77 78 4.182433 TGGCTGACGGGCACAACA 62.182 61.111 6.40 0.00 45.79 3.33
78 79 3.357079 GGCTGACGGGCACAACAG 61.357 66.667 2.31 5.20 40.53 3.16
79 80 2.591715 GCTGACGGGCACAACAGT 60.592 61.111 10.36 0.00 33.57 3.55
80 81 2.896801 GCTGACGGGCACAACAGTG 61.897 63.158 10.36 0.00 36.35 3.66
81 82 2.203139 TGACGGGCACAACAGTGG 60.203 61.111 0.00 0.00 33.85 4.00
87 88 3.348236 GCACAACAGTGGCAGAGG 58.652 61.111 0.00 0.00 33.85 3.69
88 89 2.263741 GCACAACAGTGGCAGAGGG 61.264 63.158 0.00 0.00 33.85 4.30
89 90 2.113986 ACAACAGTGGCAGAGGGC 59.886 61.111 0.00 0.00 43.74 5.19
98 99 2.123982 GCAGAGGGCAAGGGATGG 60.124 66.667 0.00 0.00 43.97 3.51
99 100 2.683465 GCAGAGGGCAAGGGATGGA 61.683 63.158 0.00 0.00 43.97 3.41
100 101 2.001803 CAGAGGGCAAGGGATGGAA 58.998 57.895 0.00 0.00 0.00 3.53
101 102 0.394899 CAGAGGGCAAGGGATGGAAC 60.395 60.000 0.00 0.00 0.00 3.62
102 103 1.452108 GAGGGCAAGGGATGGAACG 60.452 63.158 0.00 0.00 0.00 3.95
103 104 1.910580 GAGGGCAAGGGATGGAACGA 61.911 60.000 0.00 0.00 0.00 3.85
104 105 1.452108 GGGCAAGGGATGGAACGAG 60.452 63.158 0.00 0.00 0.00 4.18
105 106 1.299976 GGCAAGGGATGGAACGAGT 59.700 57.895 0.00 0.00 0.00 4.18
106 107 0.539986 GGCAAGGGATGGAACGAGTA 59.460 55.000 0.00 0.00 0.00 2.59
107 108 1.473434 GGCAAGGGATGGAACGAGTAG 60.473 57.143 0.00 0.00 0.00 2.57
108 109 1.941325 CAAGGGATGGAACGAGTAGC 58.059 55.000 0.00 0.00 0.00 3.58
109 110 1.207089 CAAGGGATGGAACGAGTAGCA 59.793 52.381 0.00 0.00 0.00 3.49
110 111 1.115467 AGGGATGGAACGAGTAGCAG 58.885 55.000 0.00 0.00 0.00 4.24
111 112 0.530870 GGGATGGAACGAGTAGCAGC 60.531 60.000 0.00 0.00 0.00 5.25
112 113 0.872021 GGATGGAACGAGTAGCAGCG 60.872 60.000 0.00 0.00 0.00 5.18
113 114 0.872021 GATGGAACGAGTAGCAGCGG 60.872 60.000 0.00 0.00 0.00 5.52
114 115 2.202756 GGAACGAGTAGCAGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
115 116 2.202756 GAACGAGTAGCAGCGGGG 60.203 66.667 0.00 0.00 0.00 5.73
116 117 4.452733 AACGAGTAGCAGCGGGGC 62.453 66.667 0.00 0.00 0.00 5.80
156 157 4.233635 GCGCTGGCGAAGATGCAG 62.234 66.667 19.31 0.00 42.83 4.41
157 158 4.233635 CGCTGGCGAAGATGCAGC 62.234 66.667 9.51 0.00 42.83 5.25
158 159 3.129502 GCTGGCGAAGATGCAGCA 61.130 61.111 4.07 0.00 38.23 4.41
159 160 3.099438 CTGGCGAAGATGCAGCAG 58.901 61.111 4.07 0.00 36.28 4.24
160 161 3.109612 CTGGCGAAGATGCAGCAGC 62.110 63.158 4.07 1.15 42.57 5.25
161 162 3.885521 GGCGAAGATGCAGCAGCC 61.886 66.667 17.67 17.67 41.13 4.85
162 163 3.885521 GCGAAGATGCAGCAGCCC 61.886 66.667 7.13 0.00 41.13 5.19
163 164 3.207669 CGAAGATGCAGCAGCCCC 61.208 66.667 7.13 0.00 41.13 5.80
164 165 3.207669 GAAGATGCAGCAGCCCCG 61.208 66.667 7.13 0.00 41.13 5.73
177 178 2.438434 CCCCGCAGCCGAAGATTT 60.438 61.111 0.00 0.00 36.29 2.17
178 179 2.046285 CCCCGCAGCCGAAGATTTT 61.046 57.895 0.00 0.00 36.29 1.82
179 180 1.595093 CCCCGCAGCCGAAGATTTTT 61.595 55.000 0.00 0.00 36.29 1.94
180 181 1.091537 CCCGCAGCCGAAGATTTTTA 58.908 50.000 0.00 0.00 36.29 1.52
181 182 1.202143 CCCGCAGCCGAAGATTTTTAC 60.202 52.381 0.00 0.00 36.29 2.01
182 183 1.737793 CCGCAGCCGAAGATTTTTACT 59.262 47.619 0.00 0.00 36.29 2.24
183 184 2.223044 CCGCAGCCGAAGATTTTTACTC 60.223 50.000 0.00 0.00 36.29 2.59
184 185 2.534939 CGCAGCCGAAGATTTTTACTCG 60.535 50.000 0.00 0.00 36.29 4.18
185 186 2.223044 GCAGCCGAAGATTTTTACTCGG 60.223 50.000 5.02 5.02 42.86 4.63
188 189 2.352388 CCGAAGATTTTTACTCGGCCA 58.648 47.619 2.24 0.00 33.97 5.36
189 190 2.095372 CCGAAGATTTTTACTCGGCCAC 59.905 50.000 2.24 0.00 33.97 5.01
190 191 2.222729 CGAAGATTTTTACTCGGCCACG 60.223 50.000 2.24 0.00 42.74 4.94
191 192 2.467566 AGATTTTTACTCGGCCACGT 57.532 45.000 2.24 0.45 41.85 4.49
192 193 3.598019 AGATTTTTACTCGGCCACGTA 57.402 42.857 2.24 0.00 41.85 3.57
193 194 3.256558 AGATTTTTACTCGGCCACGTAC 58.743 45.455 2.24 0.00 41.85 3.67
194 195 1.794512 TTTTTACTCGGCCACGTACC 58.205 50.000 2.24 0.00 41.85 3.34
201 202 2.433664 GGCCACGTACCGGTGAAG 60.434 66.667 19.93 10.88 40.38 3.02
202 203 2.341176 GCCACGTACCGGTGAAGT 59.659 61.111 19.93 11.60 40.38 3.01
203 204 1.586028 GCCACGTACCGGTGAAGTA 59.414 57.895 19.93 0.00 40.38 2.24
204 205 0.038343 GCCACGTACCGGTGAAGTAA 60.038 55.000 19.93 0.00 40.38 2.24
205 206 1.605202 GCCACGTACCGGTGAAGTAAA 60.605 52.381 19.93 0.00 40.38 2.01
206 207 2.932187 GCCACGTACCGGTGAAGTAAAT 60.932 50.000 19.93 0.00 40.38 1.40
207 208 3.328505 CCACGTACCGGTGAAGTAAATT 58.671 45.455 19.93 0.00 40.38 1.82
208 209 3.747529 CCACGTACCGGTGAAGTAAATTT 59.252 43.478 19.93 0.00 40.38 1.82
209 210 4.928615 CCACGTACCGGTGAAGTAAATTTA 59.071 41.667 19.93 0.00 40.38 1.40
210 211 5.062558 CCACGTACCGGTGAAGTAAATTTAG 59.937 44.000 19.93 0.75 40.38 1.85
211 212 5.062558 CACGTACCGGTGAAGTAAATTTAGG 59.937 44.000 19.93 0.03 40.38 2.69
212 213 5.047377 ACGTACCGGTGAAGTAAATTTAGGA 60.047 40.000 19.93 0.00 0.00 2.94
213 214 5.868801 CGTACCGGTGAAGTAAATTTAGGAA 59.131 40.000 19.93 0.00 0.00 3.36
214 215 6.368516 CGTACCGGTGAAGTAAATTTAGGAAA 59.631 38.462 19.93 0.00 0.00 3.13
215 216 6.812879 ACCGGTGAAGTAAATTTAGGAAAG 57.187 37.500 6.12 0.00 0.00 2.62
216 217 6.301486 ACCGGTGAAGTAAATTTAGGAAAGT 58.699 36.000 6.12 0.00 0.00 2.66
217 218 6.774170 ACCGGTGAAGTAAATTTAGGAAAGTT 59.226 34.615 6.12 0.00 32.89 2.66
218 219 7.286087 ACCGGTGAAGTAAATTTAGGAAAGTTT 59.714 33.333 6.12 0.00 30.58 2.66
219 220 8.139350 CCGGTGAAGTAAATTTAGGAAAGTTTT 58.861 33.333 0.00 0.00 30.58 2.43
220 221 9.524106 CGGTGAAGTAAATTTAGGAAAGTTTTT 57.476 29.630 0.00 0.00 30.58 1.94
223 224 9.825109 TGAAGTAAATTTAGGAAAGTTTTTGGG 57.175 29.630 0.00 0.00 30.58 4.12
224 225 9.268268 GAAGTAAATTTAGGAAAGTTTTTGGGG 57.732 33.333 0.00 0.00 30.58 4.96
225 226 7.221450 AGTAAATTTAGGAAAGTTTTTGGGGC 58.779 34.615 0.00 0.00 30.58 5.80
226 227 5.904984 AATTTAGGAAAGTTTTTGGGGCT 57.095 34.783 0.00 0.00 0.00 5.19
227 228 4.681074 TTTAGGAAAGTTTTTGGGGCTG 57.319 40.909 0.00 0.00 0.00 4.85
228 229 1.423584 AGGAAAGTTTTTGGGGCTGG 58.576 50.000 0.00 0.00 0.00 4.85
229 230 1.062505 AGGAAAGTTTTTGGGGCTGGA 60.063 47.619 0.00 0.00 0.00 3.86
230 231 1.344438 GGAAAGTTTTTGGGGCTGGAG 59.656 52.381 0.00 0.00 0.00 3.86
231 232 2.039418 GAAAGTTTTTGGGGCTGGAGT 58.961 47.619 0.00 0.00 0.00 3.85
232 233 3.227614 GAAAGTTTTTGGGGCTGGAGTA 58.772 45.455 0.00 0.00 0.00 2.59
233 234 3.322191 AAGTTTTTGGGGCTGGAGTAA 57.678 42.857 0.00 0.00 0.00 2.24
234 235 3.322191 AGTTTTTGGGGCTGGAGTAAA 57.678 42.857 0.00 0.00 0.00 2.01
235 236 3.648739 AGTTTTTGGGGCTGGAGTAAAA 58.351 40.909 0.00 0.00 0.00 1.52
236 237 4.034410 AGTTTTTGGGGCTGGAGTAAAAA 58.966 39.130 0.00 0.00 0.00 1.94
237 238 4.658435 AGTTTTTGGGGCTGGAGTAAAAAT 59.342 37.500 0.00 0.00 34.15 1.82
238 239 5.841783 AGTTTTTGGGGCTGGAGTAAAAATA 59.158 36.000 0.00 0.00 34.15 1.40
239 240 6.500400 AGTTTTTGGGGCTGGAGTAAAAATAT 59.500 34.615 0.00 0.00 34.15 1.28
240 241 7.676468 AGTTTTTGGGGCTGGAGTAAAAATATA 59.324 33.333 0.00 0.00 34.15 0.86
241 242 7.412853 TTTTGGGGCTGGAGTAAAAATATAC 57.587 36.000 0.00 0.00 0.00 1.47
242 243 5.987019 TGGGGCTGGAGTAAAAATATACT 57.013 39.130 0.00 0.00 38.81 2.12
254 255 8.937634 AGTAAAAATATACTCCACTAACCGTG 57.062 34.615 0.00 0.00 43.41 4.94
255 256 8.752187 AGTAAAAATATACTCCACTAACCGTGA 58.248 33.333 0.00 0.00 43.53 4.35
256 257 9.369904 GTAAAAATATACTCCACTAACCGTGAA 57.630 33.333 0.00 0.00 46.81 3.18
259 260 9.760077 AAAATATACTCCACTAACCGTGAATAG 57.240 33.333 0.00 0.00 46.81 1.73
260 261 8.701908 AATATACTCCACTAACCGTGAATAGA 57.298 34.615 0.00 0.00 46.81 1.98
261 262 4.985538 ACTCCACTAACCGTGAATAGAG 57.014 45.455 0.00 0.00 46.81 2.43
262 263 3.700038 ACTCCACTAACCGTGAATAGAGG 59.300 47.826 0.00 0.00 46.81 3.69
263 264 3.952323 CTCCACTAACCGTGAATAGAGGA 59.048 47.826 0.00 0.00 46.81 3.71
264 265 4.543689 TCCACTAACCGTGAATAGAGGAT 58.456 43.478 0.00 0.00 46.81 3.24
265 266 4.583489 TCCACTAACCGTGAATAGAGGATC 59.417 45.833 0.00 0.00 46.81 3.36
266 267 4.537965 CACTAACCGTGAATAGAGGATCG 58.462 47.826 0.00 0.00 46.81 3.69
267 268 3.568853 ACTAACCGTGAATAGAGGATCGG 59.431 47.826 0.00 0.00 42.67 4.18
268 269 2.068834 ACCGTGAATAGAGGATCGGT 57.931 50.000 0.00 0.00 44.87 4.69
271 272 4.162096 CCGTGAATAGAGGATCGGTTAG 57.838 50.000 0.00 0.00 42.67 2.34
272 273 3.819337 CCGTGAATAGAGGATCGGTTAGA 59.181 47.826 0.00 0.00 42.67 2.10
273 274 4.277672 CCGTGAATAGAGGATCGGTTAGAA 59.722 45.833 0.00 0.00 42.67 2.10
274 275 5.221185 CCGTGAATAGAGGATCGGTTAGAAA 60.221 44.000 0.00 0.00 42.67 2.52
275 276 6.448006 CGTGAATAGAGGATCGGTTAGAAAT 58.552 40.000 0.00 0.00 42.67 2.17
276 277 6.363626 CGTGAATAGAGGATCGGTTAGAAATG 59.636 42.308 0.00 0.00 42.67 2.32
277 278 6.647067 GTGAATAGAGGATCGGTTAGAAATGG 59.353 42.308 0.00 0.00 42.67 3.16
278 279 5.746990 ATAGAGGATCGGTTAGAAATGGG 57.253 43.478 0.00 0.00 42.67 4.00
279 280 2.104963 AGAGGATCGGTTAGAAATGGGC 59.895 50.000 0.00 0.00 42.67 5.36
280 281 1.143073 AGGATCGGTTAGAAATGGGCC 59.857 52.381 0.00 0.00 0.00 5.80
281 282 1.226746 GATCGGTTAGAAATGGGCCG 58.773 55.000 0.00 0.00 43.32 6.13
282 283 4.946038 CGGTTAGAAATGGGCCGA 57.054 55.556 0.00 0.00 44.57 5.54
283 284 0.177141 TCGGTTAGAAATGGGCCGAG 59.823 55.000 0.00 0.00 45.26 4.63
284 285 0.107848 CGGTTAGAAATGGGCCGAGT 60.108 55.000 0.00 0.00 44.57 4.18
285 286 1.664873 GGTTAGAAATGGGCCGAGTC 58.335 55.000 0.00 0.00 0.00 3.36
286 287 1.664873 GTTAGAAATGGGCCGAGTCC 58.335 55.000 0.00 0.00 0.00 3.85
287 288 1.209747 GTTAGAAATGGGCCGAGTCCT 59.790 52.381 0.00 0.00 0.00 3.85
288 289 2.433239 GTTAGAAATGGGCCGAGTCCTA 59.567 50.000 0.00 0.00 0.00 2.94
289 290 1.580059 AGAAATGGGCCGAGTCCTAA 58.420 50.000 0.00 0.00 0.00 2.69
290 291 2.127708 AGAAATGGGCCGAGTCCTAAT 58.872 47.619 0.00 0.00 0.00 1.73
291 292 2.104963 AGAAATGGGCCGAGTCCTAATC 59.895 50.000 0.00 0.00 0.00 1.75
292 293 1.807814 AATGGGCCGAGTCCTAATCT 58.192 50.000 0.00 0.00 0.00 2.40
293 294 1.807814 ATGGGCCGAGTCCTAATCTT 58.192 50.000 0.00 0.00 0.00 2.40
294 295 1.120530 TGGGCCGAGTCCTAATCTTC 58.879 55.000 0.00 0.00 0.00 2.87
295 296 1.120530 GGGCCGAGTCCTAATCTTCA 58.879 55.000 0.00 0.00 0.00 3.02
296 297 1.694696 GGGCCGAGTCCTAATCTTCAT 59.305 52.381 0.00 0.00 0.00 2.57
297 298 2.104963 GGGCCGAGTCCTAATCTTCATT 59.895 50.000 0.00 0.00 0.00 2.57
298 299 3.433740 GGGCCGAGTCCTAATCTTCATTT 60.434 47.826 0.00 0.00 0.00 2.32
299 300 3.810386 GGCCGAGTCCTAATCTTCATTTC 59.190 47.826 0.00 0.00 0.00 2.17
300 301 3.810386 GCCGAGTCCTAATCTTCATTTCC 59.190 47.826 0.00 0.00 0.00 3.13
301 302 4.381411 CCGAGTCCTAATCTTCATTTCCC 58.619 47.826 0.00 0.00 0.00 3.97
302 303 4.051922 CGAGTCCTAATCTTCATTTCCCG 58.948 47.826 0.00 0.00 0.00 5.14
303 304 3.809905 AGTCCTAATCTTCATTTCCCGC 58.190 45.455 0.00 0.00 0.00 6.13
304 305 3.199946 AGTCCTAATCTTCATTTCCCGCA 59.800 43.478 0.00 0.00 0.00 5.69
305 306 3.312697 GTCCTAATCTTCATTTCCCGCAC 59.687 47.826 0.00 0.00 0.00 5.34
306 307 2.287915 CCTAATCTTCATTTCCCGCACG 59.712 50.000 0.00 0.00 0.00 5.34
307 308 1.821216 AATCTTCATTTCCCGCACGT 58.179 45.000 0.00 0.00 0.00 4.49
308 309 2.684001 ATCTTCATTTCCCGCACGTA 57.316 45.000 0.00 0.00 0.00 3.57
309 310 1.717194 TCTTCATTTCCCGCACGTAC 58.283 50.000 0.00 0.00 0.00 3.67
310 311 0.725117 CTTCATTTCCCGCACGTACC 59.275 55.000 0.00 0.00 0.00 3.34
311 312 0.674269 TTCATTTCCCGCACGTACCC 60.674 55.000 0.00 0.00 0.00 3.69
312 313 1.376166 CATTTCCCGCACGTACCCA 60.376 57.895 0.00 0.00 0.00 4.51
313 314 1.376295 ATTTCCCGCACGTACCCAC 60.376 57.895 0.00 0.00 0.00 4.61
314 315 2.808181 ATTTCCCGCACGTACCCACC 62.808 60.000 0.00 0.00 0.00 4.61
318 319 4.118995 CGCACGTACCCACCGCTA 62.119 66.667 0.00 0.00 0.00 4.26
319 320 2.262292 GCACGTACCCACCGCTAA 59.738 61.111 0.00 0.00 0.00 3.09
320 321 1.374505 GCACGTACCCACCGCTAAA 60.375 57.895 0.00 0.00 0.00 1.85
321 322 0.741927 GCACGTACCCACCGCTAAAT 60.742 55.000 0.00 0.00 0.00 1.40
322 323 1.003851 CACGTACCCACCGCTAAATG 58.996 55.000 0.00 0.00 0.00 2.32
323 324 0.741927 ACGTACCCACCGCTAAATGC 60.742 55.000 0.00 0.00 38.57 3.56
324 325 0.741574 CGTACCCACCGCTAAATGCA 60.742 55.000 0.00 0.00 43.06 3.96
325 326 0.730840 GTACCCACCGCTAAATGCAC 59.269 55.000 0.00 0.00 43.06 4.57
326 327 0.325272 TACCCACCGCTAAATGCACA 59.675 50.000 0.00 0.00 43.06 4.57
327 328 0.323360 ACCCACCGCTAAATGCACAT 60.323 50.000 0.00 0.00 43.06 3.21
328 329 0.101040 CCCACCGCTAAATGCACATG 59.899 55.000 0.00 0.00 43.06 3.21
353 354 0.527385 GCAAGACGCCAAGTGCAAAA 60.527 50.000 0.00 0.00 41.33 2.44
373 374 5.708877 AAACTTAGAAGCTACTCACGTCT 57.291 39.130 0.00 0.00 0.00 4.18
438 439 2.967076 CCATCATTCGGCCGGTCG 60.967 66.667 25.52 25.52 0.00 4.79
439 440 2.967076 CATCATTCGGCCGGTCGG 60.967 66.667 30.66 13.32 38.57 4.79
448 449 1.069258 GGCCGGTCGGGATAAAGAG 59.931 63.158 11.60 0.00 38.47 2.85
468 469 3.100671 AGCTCGGTTCCTGAATTCTAGT 58.899 45.455 7.05 0.00 0.00 2.57
469 470 4.279145 AGCTCGGTTCCTGAATTCTAGTA 58.721 43.478 7.05 0.00 0.00 1.82
479 480 9.235537 GTTCCTGAATTCTAGTATCTCGTAAAC 57.764 37.037 7.05 0.00 0.00 2.01
504 557 3.923017 ACAATTTTTCTGCGGAGAAGG 57.077 42.857 19.07 10.29 39.44 3.46
527 580 5.630680 GGCCATCAAAAACATAATAGCATCG 59.369 40.000 0.00 0.00 0.00 3.84
547 600 0.529773 TGGTGACGAACAGAGTGTGC 60.530 55.000 0.00 0.00 0.00 4.57
555 608 3.699538 ACGAACAGAGTGTGCTGGATATA 59.300 43.478 0.00 0.00 40.20 0.86
557 610 4.683320 CGAACAGAGTGTGCTGGATATATG 59.317 45.833 0.00 0.00 40.20 1.78
573 626 6.543465 TGGATATATGTTTCTGAAACTGGCAG 59.457 38.462 27.75 14.16 41.90 4.85
578 631 3.627577 TGTTTCTGAAACTGGCAGAGTTC 59.372 43.478 27.75 22.02 44.68 3.01
596 649 2.672961 TCAATGCAAGTACGGAGGAG 57.327 50.000 0.00 0.00 0.00 3.69
601 654 0.831307 GCAAGTACGGAGGAGGGATT 59.169 55.000 0.00 0.00 0.00 3.01
615 668 4.164988 AGGAGGGATTCAAGAAATCGATGT 59.835 41.667 0.00 0.00 44.08 3.06
627 680 5.053145 AGAAATCGATGTAGGCAGATCAAC 58.947 41.667 0.00 0.00 0.00 3.18
628 681 4.679373 AATCGATGTAGGCAGATCAACT 57.321 40.909 0.00 0.00 0.00 3.16
629 682 3.717400 TCGATGTAGGCAGATCAACTC 57.283 47.619 0.00 0.00 0.00 3.01
630 683 3.291584 TCGATGTAGGCAGATCAACTCT 58.708 45.455 0.00 0.00 33.14 3.24
631 684 3.701542 TCGATGTAGGCAGATCAACTCTT 59.298 43.478 0.00 0.00 29.16 2.85
632 685 4.160439 TCGATGTAGGCAGATCAACTCTTT 59.840 41.667 0.00 0.00 29.16 2.52
633 686 4.872691 CGATGTAGGCAGATCAACTCTTTT 59.127 41.667 0.00 0.00 29.16 2.27
634 687 5.352569 CGATGTAGGCAGATCAACTCTTTTT 59.647 40.000 0.00 0.00 29.16 1.94
652 705 3.644966 TTTTTATGAGGGTCGGCAGAT 57.355 42.857 0.00 0.00 0.00 2.90
653 706 2.910688 TTTATGAGGGTCGGCAGATC 57.089 50.000 0.00 0.00 0.00 2.75
654 707 1.788229 TTATGAGGGTCGGCAGATCA 58.212 50.000 0.00 0.00 0.00 2.92
655 708 1.788229 TATGAGGGTCGGCAGATCAA 58.212 50.000 0.00 0.00 0.00 2.57
700 753 7.856145 CAATCTAACTGGATTGCTATATCCC 57.144 40.000 3.25 0.00 43.63 3.85
701 754 7.628234 CAATCTAACTGGATTGCTATATCCCT 58.372 38.462 3.25 0.32 43.63 4.20
880 958 2.688446 TGCAATCCAACCAAAACGTACA 59.312 40.909 0.00 0.00 0.00 2.90
891 969 0.035739 AAACGTACATCCCCAACGCT 59.964 50.000 0.00 0.00 40.18 5.07
918 996 5.118817 GTCCTTGAGCGATTATAATTCCGAC 59.881 44.000 9.94 4.75 0.00 4.79
936 1014 2.975851 CGACTTTGAAGTTGCATTCTGC 59.024 45.455 1.98 0.00 41.02 4.26
955 1033 3.673902 TGCTTTCAGAATCCATCGTTCA 58.326 40.909 0.00 0.00 0.00 3.18
959 1037 3.616956 TCAGAATCCATCGTTCAAGCT 57.383 42.857 0.00 0.00 0.00 3.74
960 1038 4.736126 TCAGAATCCATCGTTCAAGCTA 57.264 40.909 0.00 0.00 0.00 3.32
1068 1146 3.437795 GACAGCAGCAGCCGCATT 61.438 61.111 2.79 0.00 43.56 3.56
1091 1169 1.289380 GGCCCAGGTATCGATCGAC 59.711 63.158 22.06 9.35 0.00 4.20
1093 1171 1.579932 CCCAGGTATCGATCGACCG 59.420 63.158 22.06 13.91 40.91 4.79
1159 1237 0.746063 TGCTTCAAGTTTGTGCCCTG 59.254 50.000 8.95 0.00 0.00 4.45
1190 1268 0.038166 TTCACTTCAGGGCCATGTCC 59.962 55.000 18.43 0.00 0.00 4.02
1349 1429 0.674895 ACGAGGCAAGCATGTTCTCC 60.675 55.000 0.00 0.00 0.00 3.71
1374 1454 3.181521 CGCGAACTGATCACTGCATTTAA 60.182 43.478 0.00 0.00 0.00 1.52
1413 1495 5.163509 GCTAGACATGACACCTGACTTGATA 60.164 44.000 0.00 0.00 0.00 2.15
1438 1536 0.179032 TTGCAGAAGAAACCCGCAGA 60.179 50.000 0.00 0.00 33.48 4.26
1504 1602 4.120755 GGAGGCCAAGCTGGGGAG 62.121 72.222 9.87 0.00 38.19 4.30
1694 1792 0.035881 CAGAACAGAGGCAGCAGGAA 59.964 55.000 0.00 0.00 0.00 3.36
1715 1813 2.383527 GGAGGCAGAAGTTGTCGCG 61.384 63.158 0.00 0.00 36.21 5.87
1765 1863 1.153349 GAAGAGGCATGGTCGACCC 60.153 63.158 31.19 16.08 34.29 4.46
1821 1919 3.385577 GAGAAGACGACTGATAATGGCC 58.614 50.000 0.00 0.00 0.00 5.36
1877 1975 3.948719 GGTGGTGGCAACGAGGGA 61.949 66.667 0.00 0.00 42.51 4.20
1984 2082 1.380403 ATGGAGGTCGACGAGCTGAG 61.380 60.000 32.19 0.00 40.67 3.35
2020 2118 2.852495 AAGGACGCGAACATCGGCAT 62.852 55.000 15.93 0.00 40.84 4.40
2048 2146 0.392193 CAGAGCTGGTCGCAAAGGAT 60.392 55.000 0.00 0.00 42.61 3.24
2222 2320 2.752238 CTGAGGGAGTCGGAGCGT 60.752 66.667 0.00 0.00 32.51 5.07
2456 2554 1.079057 GTGGAAGAAGAGGGCGTCC 60.079 63.158 0.00 0.00 34.95 4.79
2475 2573 2.559668 TCCAAGTGATCGGAAAGTACGT 59.440 45.455 0.00 0.00 0.00 3.57
2534 2640 1.578583 GCATGGGAATTTGCTGATGC 58.421 50.000 8.74 8.74 40.20 3.91
2558 2664 2.148558 GATCGATCGGGTGCCTCTCC 62.149 65.000 16.41 0.00 0.00 3.71
2559 2665 2.928988 ATCGATCGGGTGCCTCTCCA 62.929 60.000 16.41 0.00 0.00 3.86
2560 2666 2.818132 GATCGGGTGCCTCTCCAG 59.182 66.667 0.00 0.00 0.00 3.86
2582 2688 3.239941 GCTGTAACTAGATAACGTGCACG 59.760 47.826 35.99 35.99 46.33 5.34
2614 2720 5.857517 TGTTTGTTTACCGTTCACAGTTTTC 59.142 36.000 0.00 0.00 0.00 2.29
2721 2831 1.614413 AGAGGAGGAACGAACACTGTC 59.386 52.381 0.00 0.00 0.00 3.51
2722 2832 1.614413 GAGGAGGAACGAACACTGTCT 59.386 52.381 0.00 0.00 0.00 3.41
2732 2842 3.248602 ACGAACACTGTCTTGCTGAATTC 59.751 43.478 0.00 0.00 0.00 2.17
2736 2846 2.096069 CACTGTCTTGCTGAATTCGTGG 60.096 50.000 0.04 0.00 0.00 4.94
2778 2888 4.911390 ACCTGCTAAATTACTGCACTCTT 58.089 39.130 0.00 0.00 32.91 2.85
2795 2905 3.072184 ACTCTTTGTGCTTGATGTCTCCT 59.928 43.478 0.00 0.00 0.00 3.69
2802 2912 1.875576 GCTTGATGTCTCCTATGCCCG 60.876 57.143 0.00 0.00 0.00 6.13
2803 2913 1.688735 CTTGATGTCTCCTATGCCCGA 59.311 52.381 0.00 0.00 0.00 5.14
2804 2914 2.015456 TGATGTCTCCTATGCCCGAT 57.985 50.000 0.00 0.00 0.00 4.18
2805 2915 1.895798 TGATGTCTCCTATGCCCGATC 59.104 52.381 0.00 0.00 0.00 3.69
2807 2917 1.179174 TGTCTCCTATGCCCGATCCG 61.179 60.000 0.00 0.00 0.00 4.18
2831 2944 1.346722 ACTTAACCAAGTCCCGGTCAG 59.653 52.381 0.00 0.00 41.25 3.51
2832 2945 0.688487 TTAACCAAGTCCCGGTCAGG 59.312 55.000 0.00 2.49 34.99 3.86
2848 2961 3.805207 GTCAGGTGACCCAACATATACC 58.195 50.000 0.00 0.00 39.07 2.73
2849 2962 3.454812 GTCAGGTGACCCAACATATACCT 59.545 47.826 0.00 0.00 39.07 3.08
2850 2963 3.709653 TCAGGTGACCCAACATATACCTC 59.290 47.826 0.00 0.00 36.46 3.85
2851 2964 2.698797 AGGTGACCCAACATATACCTCG 59.301 50.000 0.00 0.00 33.48 4.63
2852 2965 2.480845 GTGACCCAACATATACCTCGC 58.519 52.381 0.00 0.00 0.00 5.03
2853 2966 2.112190 TGACCCAACATATACCTCGCA 58.888 47.619 0.00 0.00 0.00 5.10
2854 2967 2.502130 TGACCCAACATATACCTCGCAA 59.498 45.455 0.00 0.00 0.00 4.85
2885 2998 9.965824 AAAGTGACACAACATATAAAAGAAAGG 57.034 29.630 8.59 0.00 0.00 3.11
2953 3066 9.549509 GATCTAACAGATTTAGCATCTAGTACG 57.450 37.037 0.00 0.00 34.53 3.67
2959 3072 6.575572 CAGATTTAGCATCTAGTACGACTTCG 59.424 42.308 0.00 0.00 46.33 3.79
2992 3105 3.631250 TGGATTGAGATTTAGCAACCCC 58.369 45.455 0.00 0.00 25.64 4.95
2994 3107 2.122783 TTGAGATTTAGCAACCCCGG 57.877 50.000 0.00 0.00 0.00 5.73
3079 3192 0.465460 GAGGTTGTTGGGACTGTGCA 60.465 55.000 0.77 0.00 0.00 4.57
3087 3200 0.034574 TGGGACTGTGCACAAACACT 60.035 50.000 21.98 0.55 41.30 3.55
3101 3214 3.120338 ACAAACACTGTGTCGTCAAACTG 60.120 43.478 14.68 4.71 36.69 3.16
3105 3218 1.665679 ACTGTGTCGTCAAACTGCAAG 59.334 47.619 0.00 0.00 42.29 4.01
3110 3223 0.581529 TCGTCAAACTGCAAGCTTCG 59.418 50.000 0.00 0.00 37.60 3.79
3121 3234 6.743575 ACTGCAAGCTTCGTAATCTTTATT 57.256 33.333 0.00 0.00 37.60 1.40
3125 3238 7.367285 TGCAAGCTTCGTAATCTTTATTTTGT 58.633 30.769 0.00 0.00 0.00 2.83
3205 4619 9.809096 TCAAACACTAAAAATGCTATGAAACAA 57.191 25.926 0.00 0.00 0.00 2.83
3214 4628 7.935338 AAATGCTATGAAACAACAAGTTCTG 57.065 32.000 0.00 0.00 40.26 3.02
3220 4634 8.482429 GCTATGAAACAACAAGTTCTGAAAATG 58.518 33.333 0.00 0.00 40.26 2.32
3221 4635 7.775397 ATGAAACAACAAGTTCTGAAAATGG 57.225 32.000 8.11 0.00 40.26 3.16
3245 4659 2.022808 CGAAATTCGCCGGATTGATG 57.977 50.000 5.05 0.00 31.14 3.07
3249 4663 4.319477 CGAAATTCGCCGGATTGATGTATT 60.319 41.667 5.05 0.00 31.14 1.89
3263 4677 9.944663 GGATTGATGTATTATTTGCGACTAAAA 57.055 29.630 0.00 0.00 0.00 1.52
3288 4702 7.744087 AAGTCAAGTAACAGACATTTGCATA 57.256 32.000 0.00 0.00 37.23 3.14
3348 4762 2.094762 ACTAATGGTGTTCAGTCGCC 57.905 50.000 0.00 0.00 38.35 5.54
3375 4789 2.094649 GTCCTTGTACTGGTCGAAGGAG 60.095 54.545 9.70 0.00 43.66 3.69
3381 4795 0.968393 ACTGGTCGAAGGAGAGGAGC 60.968 60.000 0.00 0.00 0.00 4.70
3419 4833 4.117661 GGAGTCGAACGGCTCGCT 62.118 66.667 19.66 5.37 46.89 4.93
3421 4835 2.649843 GGAGTCGAACGGCTCGCTAG 62.650 65.000 19.66 0.00 46.89 3.42
3436 4850 1.213013 CTAGCGGCTCAACGACACT 59.787 57.895 5.39 0.00 35.47 3.55
3448 4862 0.107116 ACGACACTAGATCTCCGGCT 60.107 55.000 0.00 0.00 0.00 5.52
3450 4864 2.219458 CGACACTAGATCTCCGGCTTA 58.781 52.381 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.126502 GAAACACCGCCGCATTGG 60.127 61.111 0.00 0.00 42.50 3.16
5 6 1.729131 GTGAAACACCGCCGCATTG 60.729 57.895 0.00 0.00 36.32 2.82
6 7 2.642700 GTGAAACACCGCCGCATT 59.357 55.556 0.00 0.00 36.32 3.56
7 8 3.361977 GGTGAAACACCGCCGCAT 61.362 61.111 5.17 0.00 44.95 4.73
15 16 2.096417 CGTCGGAATCAAGGTGAAACAC 60.096 50.000 0.00 0.00 39.98 3.32
16 17 2.139917 CGTCGGAATCAAGGTGAAACA 58.860 47.619 0.00 0.00 39.98 2.83
17 18 2.157085 GTCGTCGGAATCAAGGTGAAAC 59.843 50.000 0.00 0.00 0.00 2.78
18 19 2.409975 GTCGTCGGAATCAAGGTGAAA 58.590 47.619 0.00 0.00 0.00 2.69
19 20 1.667756 CGTCGTCGGAATCAAGGTGAA 60.668 52.381 0.00 0.00 0.00 3.18
20 21 0.109458 CGTCGTCGGAATCAAGGTGA 60.109 55.000 0.00 0.00 0.00 4.02
21 22 2.359792 CGTCGTCGGAATCAAGGTG 58.640 57.895 0.00 0.00 0.00 4.00
22 23 4.883026 CGTCGTCGGAATCAAGGT 57.117 55.556 0.00 0.00 0.00 3.50
41 42 4.760047 CCCGTTCAGCCCCTGTCG 62.760 72.222 0.00 0.00 32.61 4.35
49 50 4.704833 TCAGCCAGCCCGTTCAGC 62.705 66.667 0.00 0.00 0.00 4.26
50 51 2.743928 GTCAGCCAGCCCGTTCAG 60.744 66.667 0.00 0.00 0.00 3.02
51 52 4.680237 CGTCAGCCAGCCCGTTCA 62.680 66.667 0.00 0.00 0.00 3.18
59 60 3.357079 GTTGTGCCCGTCAGCCAG 61.357 66.667 0.00 0.00 0.00 4.85
60 61 4.182433 TGTTGTGCCCGTCAGCCA 62.182 61.111 0.00 0.00 0.00 4.75
61 62 3.357079 CTGTTGTGCCCGTCAGCC 61.357 66.667 0.00 0.00 0.00 4.85
62 63 2.591715 ACTGTTGTGCCCGTCAGC 60.592 61.111 0.00 0.00 0.00 4.26
63 64 2.253758 CCACTGTTGTGCCCGTCAG 61.254 63.158 0.00 0.00 42.54 3.51
64 65 2.203139 CCACTGTTGTGCCCGTCA 60.203 61.111 0.00 0.00 42.54 4.35
65 66 3.660111 GCCACTGTTGTGCCCGTC 61.660 66.667 0.00 0.00 42.54 4.79
66 67 4.497984 TGCCACTGTTGTGCCCGT 62.498 61.111 0.00 0.00 42.54 5.28
67 68 3.663176 CTGCCACTGTTGTGCCCG 61.663 66.667 0.00 0.00 42.54 6.13
68 69 2.203337 TCTGCCACTGTTGTGCCC 60.203 61.111 0.00 0.00 42.54 5.36
69 70 2.263741 CCTCTGCCACTGTTGTGCC 61.264 63.158 0.00 0.00 42.54 5.01
70 71 2.263741 CCCTCTGCCACTGTTGTGC 61.264 63.158 0.00 0.00 42.54 4.57
71 72 2.263741 GCCCTCTGCCACTGTTGTG 61.264 63.158 0.00 0.00 43.45 3.33
72 73 2.113986 GCCCTCTGCCACTGTTGT 59.886 61.111 0.00 0.00 0.00 3.32
73 74 1.521450 CTTGCCCTCTGCCACTGTTG 61.521 60.000 0.00 0.00 40.16 3.33
74 75 1.228367 CTTGCCCTCTGCCACTGTT 60.228 57.895 0.00 0.00 40.16 3.16
75 76 2.433446 CTTGCCCTCTGCCACTGT 59.567 61.111 0.00 0.00 40.16 3.55
76 77 2.360852 CCTTGCCCTCTGCCACTG 60.361 66.667 0.00 0.00 40.16 3.66
77 78 3.655211 CCCTTGCCCTCTGCCACT 61.655 66.667 0.00 0.00 40.16 4.00
78 79 2.988839 ATCCCTTGCCCTCTGCCAC 61.989 63.158 0.00 0.00 40.16 5.01
79 80 2.614969 ATCCCTTGCCCTCTGCCA 60.615 61.111 0.00 0.00 40.16 4.92
80 81 2.123982 CATCCCTTGCCCTCTGCC 60.124 66.667 0.00 0.00 40.16 4.85
81 82 2.123982 CCATCCCTTGCCCTCTGC 60.124 66.667 0.00 0.00 41.77 4.26
82 83 0.394899 GTTCCATCCCTTGCCCTCTG 60.395 60.000 0.00 0.00 0.00 3.35
83 84 1.915078 CGTTCCATCCCTTGCCCTCT 61.915 60.000 0.00 0.00 0.00 3.69
84 85 1.452108 CGTTCCATCCCTTGCCCTC 60.452 63.158 0.00 0.00 0.00 4.30
85 86 1.915078 CTCGTTCCATCCCTTGCCCT 61.915 60.000 0.00 0.00 0.00 5.19
86 87 1.452108 CTCGTTCCATCCCTTGCCC 60.452 63.158 0.00 0.00 0.00 5.36
87 88 0.539986 TACTCGTTCCATCCCTTGCC 59.460 55.000 0.00 0.00 0.00 4.52
88 89 1.941325 CTACTCGTTCCATCCCTTGC 58.059 55.000 0.00 0.00 0.00 4.01
89 90 1.207089 TGCTACTCGTTCCATCCCTTG 59.793 52.381 0.00 0.00 0.00 3.61
90 91 1.482593 CTGCTACTCGTTCCATCCCTT 59.517 52.381 0.00 0.00 0.00 3.95
91 92 1.115467 CTGCTACTCGTTCCATCCCT 58.885 55.000 0.00 0.00 0.00 4.20
92 93 0.530870 GCTGCTACTCGTTCCATCCC 60.531 60.000 0.00 0.00 0.00 3.85
93 94 0.872021 CGCTGCTACTCGTTCCATCC 60.872 60.000 0.00 0.00 0.00 3.51
94 95 0.872021 CCGCTGCTACTCGTTCCATC 60.872 60.000 0.00 0.00 0.00 3.51
95 96 1.141881 CCGCTGCTACTCGTTCCAT 59.858 57.895 0.00 0.00 0.00 3.41
96 97 2.571757 CCGCTGCTACTCGTTCCA 59.428 61.111 0.00 0.00 0.00 3.53
97 98 2.202756 CCCGCTGCTACTCGTTCC 60.203 66.667 0.00 0.00 0.00 3.62
98 99 2.202756 CCCCGCTGCTACTCGTTC 60.203 66.667 0.00 0.00 0.00 3.95
99 100 4.452733 GCCCCGCTGCTACTCGTT 62.453 66.667 0.00 0.00 0.00 3.85
139 140 4.233635 CTGCATCTTCGCCAGCGC 62.234 66.667 7.27 0.00 39.59 5.92
140 141 4.233635 GCTGCATCTTCGCCAGCG 62.234 66.667 5.50 5.50 41.35 5.18
141 142 3.109612 CTGCTGCATCTTCGCCAGC 62.110 63.158 1.31 5.00 36.90 4.85
142 143 3.099438 CTGCTGCATCTTCGCCAG 58.901 61.111 1.31 0.00 0.00 4.85
143 144 3.129502 GCTGCTGCATCTTCGCCA 61.130 61.111 11.11 0.00 39.41 5.69
144 145 3.885521 GGCTGCTGCATCTTCGCC 61.886 66.667 17.89 13.13 41.91 5.54
145 146 3.885521 GGGCTGCTGCATCTTCGC 61.886 66.667 17.89 2.04 41.91 4.70
146 147 3.207669 GGGGCTGCTGCATCTTCG 61.208 66.667 17.89 0.00 41.91 3.79
147 148 3.207669 CGGGGCTGCTGCATCTTC 61.208 66.667 17.89 0.00 41.91 2.87
160 161 1.595093 AAAAATCTTCGGCTGCGGGG 61.595 55.000 7.38 1.69 0.00 5.73
161 162 1.091537 TAAAAATCTTCGGCTGCGGG 58.908 50.000 7.38 0.00 0.00 6.13
162 163 1.737793 AGTAAAAATCTTCGGCTGCGG 59.262 47.619 0.11 0.11 0.00 5.69
163 164 2.534939 CGAGTAAAAATCTTCGGCTGCG 60.535 50.000 0.00 0.00 0.00 5.18
164 165 2.223044 CCGAGTAAAAATCTTCGGCTGC 60.223 50.000 0.00 0.00 33.97 5.25
165 166 3.658351 CCGAGTAAAAATCTTCGGCTG 57.342 47.619 0.00 0.00 33.97 4.85
168 169 2.095372 GTGGCCGAGTAAAAATCTTCGG 59.905 50.000 7.36 7.36 42.86 4.30
169 170 2.222729 CGTGGCCGAGTAAAAATCTTCG 60.223 50.000 0.00 0.00 35.63 3.79
170 171 2.740447 ACGTGGCCGAGTAAAAATCTTC 59.260 45.455 0.00 0.00 37.88 2.87
171 172 2.774687 ACGTGGCCGAGTAAAAATCTT 58.225 42.857 0.00 0.00 37.88 2.40
172 173 2.467566 ACGTGGCCGAGTAAAAATCT 57.532 45.000 0.00 0.00 37.88 2.40
173 174 2.349580 GGTACGTGGCCGAGTAAAAATC 59.650 50.000 11.11 0.35 37.88 2.17
174 175 2.349590 GGTACGTGGCCGAGTAAAAAT 58.650 47.619 11.11 0.00 37.88 1.82
175 176 1.794512 GGTACGTGGCCGAGTAAAAA 58.205 50.000 11.11 0.00 37.88 1.94
176 177 3.512978 GGTACGTGGCCGAGTAAAA 57.487 52.632 11.11 0.00 37.88 1.52
190 191 7.388776 ACTTTCCTAAATTTACTTCACCGGTAC 59.611 37.037 6.87 0.00 0.00 3.34
191 192 7.452562 ACTTTCCTAAATTTACTTCACCGGTA 58.547 34.615 6.87 0.00 0.00 4.02
192 193 6.301486 ACTTTCCTAAATTTACTTCACCGGT 58.699 36.000 0.00 0.00 0.00 5.28
193 194 6.812879 ACTTTCCTAAATTTACTTCACCGG 57.187 37.500 0.00 0.00 0.00 5.28
194 195 9.524106 AAAAACTTTCCTAAATTTACTTCACCG 57.476 29.630 0.00 0.00 0.00 4.94
197 198 9.825109 CCCAAAAACTTTCCTAAATTTACTTCA 57.175 29.630 0.00 0.00 0.00 3.02
198 199 9.268268 CCCCAAAAACTTTCCTAAATTTACTTC 57.732 33.333 0.00 0.00 0.00 3.01
199 200 7.717875 GCCCCAAAAACTTTCCTAAATTTACTT 59.282 33.333 0.00 0.00 0.00 2.24
200 201 7.071950 AGCCCCAAAAACTTTCCTAAATTTACT 59.928 33.333 0.00 0.00 0.00 2.24
201 202 7.172532 CAGCCCCAAAAACTTTCCTAAATTTAC 59.827 37.037 0.00 0.00 0.00 2.01
202 203 7.220740 CAGCCCCAAAAACTTTCCTAAATTTA 58.779 34.615 0.00 0.00 0.00 1.40
203 204 6.061441 CAGCCCCAAAAACTTTCCTAAATTT 58.939 36.000 0.00 0.00 0.00 1.82
204 205 5.456042 CCAGCCCCAAAAACTTTCCTAAATT 60.456 40.000 0.00 0.00 0.00 1.82
205 206 4.041567 CCAGCCCCAAAAACTTTCCTAAAT 59.958 41.667 0.00 0.00 0.00 1.40
206 207 3.389656 CCAGCCCCAAAAACTTTCCTAAA 59.610 43.478 0.00 0.00 0.00 1.85
207 208 2.969262 CCAGCCCCAAAAACTTTCCTAA 59.031 45.455 0.00 0.00 0.00 2.69
208 209 2.178106 TCCAGCCCCAAAAACTTTCCTA 59.822 45.455 0.00 0.00 0.00 2.94
209 210 1.062505 TCCAGCCCCAAAAACTTTCCT 60.063 47.619 0.00 0.00 0.00 3.36
210 211 1.344438 CTCCAGCCCCAAAAACTTTCC 59.656 52.381 0.00 0.00 0.00 3.13
211 212 2.039418 ACTCCAGCCCCAAAAACTTTC 58.961 47.619 0.00 0.00 0.00 2.62
212 213 2.174685 ACTCCAGCCCCAAAAACTTT 57.825 45.000 0.00 0.00 0.00 2.66
213 214 3.322191 TTACTCCAGCCCCAAAAACTT 57.678 42.857 0.00 0.00 0.00 2.66
214 215 3.322191 TTTACTCCAGCCCCAAAAACT 57.678 42.857 0.00 0.00 0.00 2.66
215 216 4.409718 TTTTTACTCCAGCCCCAAAAAC 57.590 40.909 0.00 0.00 0.00 2.43
216 217 6.943899 ATATTTTTACTCCAGCCCCAAAAA 57.056 33.333 0.00 0.00 33.90 1.94
217 218 7.186268 AGTATATTTTTACTCCAGCCCCAAAA 58.814 34.615 0.00 0.00 0.00 2.44
218 219 6.737608 AGTATATTTTTACTCCAGCCCCAAA 58.262 36.000 0.00 0.00 0.00 3.28
219 220 6.335781 AGTATATTTTTACTCCAGCCCCAA 57.664 37.500 0.00 0.00 0.00 4.12
220 221 5.937111 GAGTATATTTTTACTCCAGCCCCA 58.063 41.667 1.07 0.00 41.41 4.96
228 229 9.028185 CACGGTTAGTGGAGTATATTTTTACTC 57.972 37.037 3.56 3.56 46.77 2.59
229 230 8.937634 CACGGTTAGTGGAGTATATTTTTACT 57.062 34.615 0.00 0.00 46.77 2.24
245 246 3.568853 CCGATCCTCTATTCACGGTTAGT 59.431 47.826 0.00 0.00 36.38 2.24
246 247 4.162096 CCGATCCTCTATTCACGGTTAG 57.838 50.000 0.00 0.00 36.38 2.34
249 250 2.068834 ACCGATCCTCTATTCACGGT 57.931 50.000 0.00 0.00 46.69 4.83
250 251 3.819337 TCTAACCGATCCTCTATTCACGG 59.181 47.826 0.00 0.00 44.77 4.94
251 252 5.434352 TTCTAACCGATCCTCTATTCACG 57.566 43.478 0.00 0.00 0.00 4.35
252 253 6.647067 CCATTTCTAACCGATCCTCTATTCAC 59.353 42.308 0.00 0.00 0.00 3.18
253 254 6.239600 CCCATTTCTAACCGATCCTCTATTCA 60.240 42.308 0.00 0.00 0.00 2.57
254 255 6.166982 CCCATTTCTAACCGATCCTCTATTC 58.833 44.000 0.00 0.00 0.00 1.75
255 256 5.513267 GCCCATTTCTAACCGATCCTCTATT 60.513 44.000 0.00 0.00 0.00 1.73
256 257 4.020128 GCCCATTTCTAACCGATCCTCTAT 60.020 45.833 0.00 0.00 0.00 1.98
257 258 3.323979 GCCCATTTCTAACCGATCCTCTA 59.676 47.826 0.00 0.00 0.00 2.43
258 259 2.104963 GCCCATTTCTAACCGATCCTCT 59.895 50.000 0.00 0.00 0.00 3.69
259 260 2.495084 GCCCATTTCTAACCGATCCTC 58.505 52.381 0.00 0.00 0.00 3.71
260 261 1.143073 GGCCCATTTCTAACCGATCCT 59.857 52.381 0.00 0.00 0.00 3.24
261 262 1.605753 GGCCCATTTCTAACCGATCC 58.394 55.000 0.00 0.00 0.00 3.36
262 263 1.226746 CGGCCCATTTCTAACCGATC 58.773 55.000 0.00 0.00 46.71 3.69
263 264 3.396951 CGGCCCATTTCTAACCGAT 57.603 52.632 0.00 0.00 46.71 4.18
264 265 4.946038 CGGCCCATTTCTAACCGA 57.054 55.556 0.00 0.00 46.71 4.69
265 266 0.107848 ACTCGGCCCATTTCTAACCG 60.108 55.000 0.00 0.00 45.15 4.44
266 267 1.664873 GACTCGGCCCATTTCTAACC 58.335 55.000 0.00 0.00 0.00 2.85
267 268 1.209747 AGGACTCGGCCCATTTCTAAC 59.790 52.381 0.00 0.00 0.00 2.34
268 269 1.580059 AGGACTCGGCCCATTTCTAA 58.420 50.000 0.00 0.00 0.00 2.10
269 270 2.464796 TAGGACTCGGCCCATTTCTA 57.535 50.000 0.00 0.00 0.00 2.10
270 271 1.580059 TTAGGACTCGGCCCATTTCT 58.420 50.000 0.00 0.00 0.00 2.52
271 272 2.104963 AGATTAGGACTCGGCCCATTTC 59.895 50.000 0.00 0.00 0.00 2.17
272 273 2.127708 AGATTAGGACTCGGCCCATTT 58.872 47.619 0.00 0.00 0.00 2.32
273 274 1.807814 AGATTAGGACTCGGCCCATT 58.192 50.000 0.00 0.00 0.00 3.16
274 275 1.694696 GAAGATTAGGACTCGGCCCAT 59.305 52.381 0.00 0.00 0.00 4.00
275 276 1.120530 GAAGATTAGGACTCGGCCCA 58.879 55.000 0.00 0.00 0.00 5.36
276 277 1.120530 TGAAGATTAGGACTCGGCCC 58.879 55.000 0.00 0.00 0.00 5.80
277 278 3.477210 AATGAAGATTAGGACTCGGCC 57.523 47.619 0.00 0.00 0.00 6.13
278 279 3.810386 GGAAATGAAGATTAGGACTCGGC 59.190 47.826 0.00 0.00 0.00 5.54
279 280 4.381411 GGGAAATGAAGATTAGGACTCGG 58.619 47.826 0.00 0.00 0.00 4.63
280 281 4.051922 CGGGAAATGAAGATTAGGACTCG 58.948 47.826 0.00 0.00 0.00 4.18
281 282 3.810386 GCGGGAAATGAAGATTAGGACTC 59.190 47.826 0.00 0.00 0.00 3.36
282 283 3.199946 TGCGGGAAATGAAGATTAGGACT 59.800 43.478 0.00 0.00 0.00 3.85
283 284 3.312697 GTGCGGGAAATGAAGATTAGGAC 59.687 47.826 0.00 0.00 0.00 3.85
284 285 3.541632 GTGCGGGAAATGAAGATTAGGA 58.458 45.455 0.00 0.00 0.00 2.94
285 286 2.287915 CGTGCGGGAAATGAAGATTAGG 59.712 50.000 0.00 0.00 0.00 2.69
286 287 2.936498 ACGTGCGGGAAATGAAGATTAG 59.064 45.455 0.00 0.00 0.00 1.73
287 288 2.980568 ACGTGCGGGAAATGAAGATTA 58.019 42.857 0.00 0.00 0.00 1.75
288 289 1.821216 ACGTGCGGGAAATGAAGATT 58.179 45.000 0.00 0.00 0.00 2.40
289 290 2.277084 GTACGTGCGGGAAATGAAGAT 58.723 47.619 0.00 0.00 0.00 2.40
290 291 1.673626 GGTACGTGCGGGAAATGAAGA 60.674 52.381 0.00 0.00 0.00 2.87
291 292 0.725117 GGTACGTGCGGGAAATGAAG 59.275 55.000 0.00 0.00 0.00 3.02
292 293 0.674269 GGGTACGTGCGGGAAATGAA 60.674 55.000 0.00 0.00 0.00 2.57
293 294 1.078988 GGGTACGTGCGGGAAATGA 60.079 57.895 0.00 0.00 0.00 2.57
294 295 1.376166 TGGGTACGTGCGGGAAATG 60.376 57.895 0.00 0.00 0.00 2.32
295 296 1.376295 GTGGGTACGTGCGGGAAAT 60.376 57.895 0.00 0.00 0.00 2.17
296 297 2.030862 GTGGGTACGTGCGGGAAA 59.969 61.111 0.00 0.00 0.00 3.13
297 298 4.006357 GGTGGGTACGTGCGGGAA 62.006 66.667 0.00 0.00 0.00 3.97
301 302 3.629883 TTAGCGGTGGGTACGTGCG 62.630 63.158 0.00 0.00 35.00 5.34
302 303 0.741927 ATTTAGCGGTGGGTACGTGC 60.742 55.000 0.00 0.00 0.00 5.34
303 304 1.003851 CATTTAGCGGTGGGTACGTG 58.996 55.000 0.00 0.00 0.00 4.49
304 305 0.741927 GCATTTAGCGGTGGGTACGT 60.742 55.000 0.00 0.00 0.00 3.57
305 306 2.011453 GCATTTAGCGGTGGGTACG 58.989 57.895 0.00 0.00 0.00 3.67
311 312 4.079434 TCAGCATGTGCATTTAGCGGTG 62.079 50.000 7.83 0.00 45.16 4.94
312 313 1.950015 TCAGCATGTGCATTTAGCGGT 60.950 47.619 7.83 0.00 45.16 5.68
313 314 0.734309 TCAGCATGTGCATTTAGCGG 59.266 50.000 7.83 0.00 45.16 5.52
314 315 2.447250 CTTCAGCATGTGCATTTAGCG 58.553 47.619 7.83 0.00 45.16 4.26
315 316 2.190981 GCTTCAGCATGTGCATTTAGC 58.809 47.619 7.83 6.69 45.16 3.09
328 329 1.208614 CTTGGCGTCTTGCTTCAGC 59.791 57.895 0.00 0.00 45.43 4.26
404 405 0.470766 TGGGAGTTGTAACCTGCGTT 59.529 50.000 0.00 0.00 35.90 4.84
438 439 1.763545 AGGAACCGAGCTCTTTATCCC 59.236 52.381 12.85 5.49 0.00 3.85
439 440 2.431057 TCAGGAACCGAGCTCTTTATCC 59.569 50.000 12.85 13.37 0.00 2.59
448 449 3.528597 ACTAGAATTCAGGAACCGAGC 57.471 47.619 8.44 0.00 0.00 5.03
479 480 6.363357 CCTTCTCCGCAGAAAAATTGTAAAAG 59.637 38.462 0.00 0.00 38.23 2.27
485 538 2.599659 GCCTTCTCCGCAGAAAAATTG 58.400 47.619 0.00 0.00 38.23 2.32
486 539 1.546029 GGCCTTCTCCGCAGAAAAATT 59.454 47.619 0.00 0.00 38.23 1.82
504 557 6.142798 CACGATGCTATTATGTTTTTGATGGC 59.857 38.462 0.00 0.00 0.00 4.40
527 580 1.209128 CACACTCTGTTCGTCACCAC 58.791 55.000 0.00 0.00 0.00 4.16
537 590 5.620738 AACATATATCCAGCACACTCTGT 57.379 39.130 0.00 0.00 32.32 3.41
547 600 6.543465 TGCCAGTTTCAGAAACATATATCCAG 59.457 38.462 24.85 6.40 43.79 3.86
555 608 3.825328 ACTCTGCCAGTTTCAGAAACAT 58.175 40.909 24.85 9.78 43.79 2.71
557 610 3.627577 TGAACTCTGCCAGTTTCAGAAAC 59.372 43.478 17.11 17.11 46.10 2.78
573 626 2.673368 CCTCCGTACTTGCATTGAACTC 59.327 50.000 0.00 0.00 0.00 3.01
578 631 1.656652 CCTCCTCCGTACTTGCATTG 58.343 55.000 0.00 0.00 0.00 2.82
596 649 4.214332 GCCTACATCGATTTCTTGAATCCC 59.786 45.833 0.00 0.00 40.92 3.85
601 654 4.736126 TCTGCCTACATCGATTTCTTGA 57.264 40.909 0.00 0.00 0.00 3.02
632 685 3.054728 TGATCTGCCGACCCTCATAAAAA 60.055 43.478 0.00 0.00 0.00 1.94
633 686 2.503765 TGATCTGCCGACCCTCATAAAA 59.496 45.455 0.00 0.00 0.00 1.52
634 687 2.115427 TGATCTGCCGACCCTCATAAA 58.885 47.619 0.00 0.00 0.00 1.40
635 688 1.788229 TGATCTGCCGACCCTCATAA 58.212 50.000 0.00 0.00 0.00 1.90
636 689 1.412710 GTTGATCTGCCGACCCTCATA 59.587 52.381 0.00 0.00 0.00 2.15
637 690 0.179000 GTTGATCTGCCGACCCTCAT 59.821 55.000 0.00 0.00 0.00 2.90
638 691 0.904865 AGTTGATCTGCCGACCCTCA 60.905 55.000 0.00 0.00 0.00 3.86
639 692 0.250513 AAGTTGATCTGCCGACCCTC 59.749 55.000 0.00 0.00 0.00 4.30
640 693 0.250513 GAAGTTGATCTGCCGACCCT 59.749 55.000 0.00 0.00 0.00 4.34
641 694 0.250513 AGAAGTTGATCTGCCGACCC 59.749 55.000 0.00 0.00 0.00 4.46
642 695 1.734465 CAAGAAGTTGATCTGCCGACC 59.266 52.381 0.00 0.00 35.46 4.79
643 696 1.129437 GCAAGAAGTTGATCTGCCGAC 59.871 52.381 0.00 0.00 35.46 4.79
644 697 1.002430 AGCAAGAAGTTGATCTGCCGA 59.998 47.619 0.00 0.00 35.46 5.54
645 698 1.129998 CAGCAAGAAGTTGATCTGCCG 59.870 52.381 0.00 0.00 35.46 5.69
646 699 2.157738 ACAGCAAGAAGTTGATCTGCC 58.842 47.619 0.00 0.00 35.46 4.85
647 700 3.251729 TCAACAGCAAGAAGTTGATCTGC 59.748 43.478 4.07 0.00 46.46 4.26
653 706 5.152097 GTCATCATCAACAGCAAGAAGTTG 58.848 41.667 0.00 0.00 44.84 3.16
654 707 4.823442 TGTCATCATCAACAGCAAGAAGTT 59.177 37.500 0.00 0.00 0.00 2.66
655 708 4.392047 TGTCATCATCAACAGCAAGAAGT 58.608 39.130 0.00 0.00 0.00 3.01
696 749 6.505700 TCCTTTTCCTCTTTCTTCTTAGGGAT 59.494 38.462 0.00 0.00 0.00 3.85
697 750 5.850028 TCCTTTTCCTCTTTCTTCTTAGGGA 59.150 40.000 0.00 0.00 0.00 4.20
698 751 6.128138 TCCTTTTCCTCTTTCTTCTTAGGG 57.872 41.667 0.00 0.00 0.00 3.53
699 752 6.657117 CCTTCCTTTTCCTCTTTCTTCTTAGG 59.343 42.308 0.00 0.00 0.00 2.69
700 753 6.150307 GCCTTCCTTTTCCTCTTTCTTCTTAG 59.850 42.308 0.00 0.00 0.00 2.18
701 754 6.004574 GCCTTCCTTTTCCTCTTTCTTCTTA 58.995 40.000 0.00 0.00 0.00 2.10
737 815 4.209288 CGTCAAGGTTCTTGACTTGTACTG 59.791 45.833 27.42 13.65 44.79 2.74
880 958 3.782443 GGACCGAGCGTTGGGGAT 61.782 66.667 5.14 0.00 0.00 3.85
891 969 4.866508 ATTATAATCGCTCAAGGACCGA 57.133 40.909 0.00 0.00 35.29 4.69
936 1014 4.394300 AGCTTGAACGATGGATTCTGAAAG 59.606 41.667 0.00 0.00 0.00 2.62
959 1037 6.510879 TTCTCTCTGTCGAAACAAGCTATA 57.489 37.500 0.00 0.00 34.24 1.31
960 1038 5.392767 TTCTCTCTGTCGAAACAAGCTAT 57.607 39.130 0.00 0.00 34.24 2.97
1068 1146 1.046472 ATCGATACCTGGGCCGTGAA 61.046 55.000 0.00 0.00 0.00 3.18
1074 1152 1.289380 GGTCGATCGATACCTGGGC 59.711 63.158 22.50 5.28 32.72 5.36
1091 1169 0.461548 TCAGATCAGGTTAGCAGCGG 59.538 55.000 0.00 0.00 0.00 5.52
1093 1171 3.311871 CACATTCAGATCAGGTTAGCAGC 59.688 47.826 0.00 0.00 0.00 5.25
1159 1237 3.923461 CCTGAAGTGAAGTTCGATCAGTC 59.077 47.826 21.27 6.70 34.03 3.51
1349 1429 2.507102 AGTGATCAGTTCGCGCGG 60.507 61.111 31.69 14.23 39.93 6.46
1390 1470 4.790765 TCAAGTCAGGTGTCATGTCTAG 57.209 45.455 0.00 0.00 0.00 2.43
1413 1495 2.099098 CGGGTTTCTTCTGCAAAGTTGT 59.901 45.455 8.01 0.00 0.00 3.32
1438 1536 2.512286 CACCACCAGCGATCGCAT 60.512 61.111 38.60 22.49 44.88 4.73
1616 1714 1.002011 GGCGGCTTCCCTCTTCTTT 60.002 57.895 0.00 0.00 0.00 2.52
1684 1782 2.588989 CCTCCTCTTCCTGCTGCC 59.411 66.667 0.00 0.00 0.00 4.85
1694 1792 0.605589 CGACAACTTCTGCCTCCTCT 59.394 55.000 0.00 0.00 0.00 3.69
1715 1813 0.385473 CACCATTTGCAACGTCGTCC 60.385 55.000 0.00 0.00 0.00 4.79
1765 1863 1.811266 CGGGACTCATTGTGCTCGG 60.811 63.158 0.00 0.00 37.18 4.63
1770 1868 0.036164 TCAACCCGGGACTCATTGTG 59.964 55.000 32.02 11.25 0.00 3.33
1821 1919 3.181503 GCAATACTGTTGCTCACCTCATG 60.182 47.826 3.38 0.00 41.87 3.07
1984 2082 1.424493 CTTCGCCGTCAGCTCCAATC 61.424 60.000 0.00 0.00 40.39 2.67
2114 2212 4.373116 GTCGTCTTCCTGCCGGCA 62.373 66.667 30.59 30.59 0.00 5.69
2195 2293 4.742649 TCCCTCAGTCGCTCGGCT 62.743 66.667 0.00 0.00 0.00 5.52
2204 2302 2.752238 CGCTCCGACTCCCTCAGT 60.752 66.667 0.00 0.00 38.45 3.41
2392 2490 4.840005 CGGCCGGCTTCCTCTTCC 62.840 72.222 28.56 4.75 0.00 3.46
2456 2554 2.092211 GCACGTACTTTCCGATCACTTG 59.908 50.000 0.00 0.00 0.00 3.16
2513 2611 0.103572 ATCAGCAAATTCCCATGCGC 59.896 50.000 0.00 0.00 46.98 6.09
2514 2612 1.847818 CATCAGCAAATTCCCATGCG 58.152 50.000 0.00 0.00 46.98 4.73
2515 2613 1.578583 GCATCAGCAAATTCCCATGC 58.421 50.000 0.00 0.00 42.87 4.06
2516 2614 1.847818 CGCATCAGCAAATTCCCATG 58.152 50.000 0.00 0.00 42.27 3.66
2522 2628 1.003116 GATCGAGCGCATCAGCAAATT 60.003 47.619 11.47 0.00 42.27 1.82
2558 2664 4.265556 GTGCACGTTATCTAGTTACAGCTG 59.734 45.833 13.48 13.48 0.00 4.24
2559 2665 4.421948 GTGCACGTTATCTAGTTACAGCT 58.578 43.478 0.00 0.00 0.00 4.24
2560 2666 3.239941 CGTGCACGTTATCTAGTTACAGC 59.760 47.826 30.50 0.00 34.11 4.40
2582 2688 5.231147 TGAACGGTAAACAAACACGTACTAC 59.769 40.000 0.00 0.00 36.69 2.73
2583 2689 5.231147 GTGAACGGTAAACAAACACGTACTA 59.769 40.000 0.00 0.00 36.69 1.82
2584 2690 4.032786 GTGAACGGTAAACAAACACGTACT 59.967 41.667 0.00 0.00 36.69 2.73
2721 2831 2.743664 TCATCACCACGAATTCAGCAAG 59.256 45.455 6.22 0.00 0.00 4.01
2722 2832 2.777094 TCATCACCACGAATTCAGCAA 58.223 42.857 6.22 0.00 0.00 3.91
2736 2846 3.375299 GGTAATGCTCTGGTGTTCATCAC 59.625 47.826 0.00 0.00 45.47 3.06
2778 2888 3.273434 GCATAGGAGACATCAAGCACAA 58.727 45.455 0.00 0.00 0.00 3.33
2785 2895 1.895798 GATCGGGCATAGGAGACATCA 59.104 52.381 0.00 0.00 0.00 3.07
2802 2912 3.889520 ACTTGGTTAAGTCTCCGGATC 57.110 47.619 3.57 0.90 43.53 3.36
2817 2930 2.214216 TCACCTGACCGGGACTTGG 61.214 63.158 6.32 8.88 36.97 3.61
2831 2944 2.805657 GCGAGGTATATGTTGGGTCACC 60.806 54.545 0.00 0.00 37.24 4.02
2832 2945 2.159014 TGCGAGGTATATGTTGGGTCAC 60.159 50.000 0.00 0.00 0.00 3.67
2932 3045 7.336161 AGTCGTACTAGATGCTAAATCTGTT 57.664 36.000 0.00 0.00 0.00 3.16
2936 3049 6.898451 CGAAGTCGTACTAGATGCTAAATC 57.102 41.667 0.00 0.00 34.11 2.17
2953 3066 6.590292 TCAATCCATTGAGACTTAACGAAGTC 59.410 38.462 9.35 9.35 45.68 3.01
2967 3080 5.360714 GGGTTGCTAAATCTCAATCCATTGA 59.639 40.000 2.07 2.07 41.80 2.57
2975 3088 1.353022 ACCGGGGTTGCTAAATCTCAA 59.647 47.619 6.32 0.00 0.00 3.02
2992 3105 1.838073 AACAGGCCTACCTCCAACCG 61.838 60.000 3.98 0.00 46.34 4.44
2994 3107 0.960861 GCAACAGGCCTACCTCCAAC 60.961 60.000 3.98 0.00 46.34 3.77
3022 3135 0.038892 GTCCAGCATGTTTGTGCCAG 60.039 55.000 0.00 0.00 46.19 4.85
3053 3166 3.564225 CAGTCCCAACAACCTCTACAAAC 59.436 47.826 0.00 0.00 0.00 2.93
3079 3192 3.071479 AGTTTGACGACACAGTGTTTGT 58.929 40.909 7.86 9.86 41.94 2.83
3087 3200 0.376852 GCTTGCAGTTTGACGACACA 59.623 50.000 0.00 0.00 0.00 3.72
3101 3214 7.796958 ACAAAATAAAGATTACGAAGCTTGC 57.203 32.000 2.10 0.00 37.18 4.01
3142 3255 9.202273 GTCAAAATTAGCACCATACATTTCAAA 57.798 29.630 0.00 0.00 0.00 2.69
3194 3319 7.985634 TTTTCAGAACTTGTTGTTTCATAGC 57.014 32.000 0.00 0.00 39.30 2.97
3196 3321 7.925483 CCCATTTTCAGAACTTGTTGTTTCATA 59.075 33.333 0.00 0.00 39.30 2.15
3205 4619 1.613437 CCGCCCATTTTCAGAACTTGT 59.387 47.619 0.00 0.00 0.00 3.16
3214 4628 1.277326 GAATTTCGCCGCCCATTTTC 58.723 50.000 0.00 0.00 0.00 2.29
3236 4650 6.228273 AGTCGCAAATAATACATCAATCCG 57.772 37.500 0.00 0.00 0.00 4.18
3263 4677 6.449635 TGCAAATGTCTGTTACTTGACTTT 57.550 33.333 9.47 7.22 33.80 2.66
3276 4690 8.737168 TGTCTTTATTAGCTATGCAAATGTCT 57.263 30.769 0.00 0.00 0.00 3.41
3288 4702 8.919145 AGTAGCTACATTCTGTCTTTATTAGCT 58.081 33.333 25.28 0.00 36.60 3.32
3321 4735 7.682741 GCGACTGAACACCATTAGTACCTAATA 60.683 40.741 0.00 0.00 34.83 0.98
3327 4741 2.928116 GGCGACTGAACACCATTAGTAC 59.072 50.000 0.00 0.00 0.00 2.73
3342 4756 0.608582 ACAAGGACTAGACGGCGACT 60.609 55.000 16.62 16.81 0.00 4.18
3343 4757 1.089920 TACAAGGACTAGACGGCGAC 58.910 55.000 16.62 7.87 0.00 5.19
3345 4759 1.093159 AGTACAAGGACTAGACGGCG 58.907 55.000 4.80 4.80 0.00 6.46
3348 4762 2.095532 CGACCAGTACAAGGACTAGACG 59.904 54.545 10.94 0.00 0.00 4.18
3375 4789 2.167861 GGTCAACGATGCGCTCCTC 61.168 63.158 9.73 1.73 0.00 3.71
3419 4833 0.450583 CTAGTGTCGTTGAGCCGCTA 59.549 55.000 0.00 0.00 0.00 4.26
3421 4835 0.179134 ATCTAGTGTCGTTGAGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
3426 4840 2.014857 CCGGAGATCTAGTGTCGTTGA 58.985 52.381 0.00 0.00 0.00 3.18
3436 4850 2.231529 GAGTGCTAAGCCGGAGATCTA 58.768 52.381 5.05 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.