Multiple sequence alignment - TraesCS1D01G335500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G335500 chr1D 100.000 5054 0 0 1 5054 425671252 425676305 0.000000e+00 9334.0
1 TraesCS1D01G335500 chr1D 95.171 3976 131 23 1000 4937 425569093 425573045 0.000000e+00 6222.0
2 TraesCS1D01G335500 chr1D 89.948 3054 240 27 1068 4110 47990411 47987414 0.000000e+00 3877.0
3 TraesCS1D01G335500 chr1D 87.879 891 86 10 4130 5014 425964172 425965046 0.000000e+00 1027.0
4 TraesCS1D01G335500 chr1D 89.227 427 38 2 3208 3626 460621138 460621564 1.250000e-145 527.0
5 TraesCS1D01G335500 chr1D 89.637 193 20 0 3755 3947 47983003 47982811 3.910000e-61 246.0
6 TraesCS1D01G335500 chr1D 86.636 217 11 9 1435 1634 460620866 460621081 1.830000e-54 224.0
7 TraesCS1D01G335500 chrUn 94.603 3687 149 20 948 4605 7467212 7463547 0.000000e+00 5661.0
8 TraesCS1D01G335500 chr1B 94.979 3346 110 18 947 4254 575709486 575712811 0.000000e+00 5195.0
9 TraesCS1D01G335500 chr1B 90.707 764 66 4 4231 4991 575712992 575713753 0.000000e+00 1013.0
10 TraesCS1D01G335500 chr1B 86.245 538 45 6 3371 3894 683149616 683150138 1.590000e-154 556.0
11 TraesCS1D01G335500 chr1B 80.315 635 73 22 3502 4127 684004243 684003652 2.790000e-117 433.0
12 TraesCS1D01G335500 chr1B 78.893 488 37 20 2363 2838 684004946 684004513 2.320000e-68 270.0
13 TraesCS1D01G335500 chr1B 86.893 206 18 5 1005 1208 683148439 683148637 6.590000e-54 222.0
14 TraesCS1D01G335500 chr1B 86.408 206 12 3 3197 3394 684004437 684004240 1.430000e-50 211.0
15 TraesCS1D01G335500 chr1B 79.048 315 36 16 618 916 575709103 575709403 6.680000e-44 189.0
16 TraesCS1D01G335500 chr1B 87.586 145 6 6 3226 3369 683149046 683149179 1.880000e-34 158.0
17 TraesCS1D01G335500 chr1B 80.717 223 16 9 1412 1629 683148736 683148936 1.130000e-31 148.0
18 TraesCS1D01G335500 chr1B 90.141 71 4 3 422 491 575697716 575697784 6.970000e-14 89.8
19 TraesCS1D01G335500 chr1B 88.732 71 5 3 422 491 575708444 575708512 3.240000e-12 84.2
20 TraesCS1D01G335500 chr1A 94.187 3372 146 16 950 4283 521256565 521259924 0.000000e+00 5096.0
21 TraesCS1D01G335500 chr1A 92.162 1212 66 7 2937 4146 517634848 517636032 0.000000e+00 1685.0
22 TraesCS1D01G335500 chr1A 93.016 945 56 6 2002 2943 517629327 517630264 0.000000e+00 1371.0
23 TraesCS1D01G335500 chr1A 91.429 840 56 11 4166 4996 521264167 521264999 0.000000e+00 1138.0
24 TraesCS1D01G335500 chr1A 90.749 854 45 10 948 1792 517628381 517629209 0.000000e+00 1109.0
25 TraesCS1D01G335500 chr1A 88.529 802 76 10 4238 5030 517764069 517764863 0.000000e+00 957.0
26 TraesCS1D01G335500 chr1A 79.732 671 112 13 3343 4010 289632152 289631503 9.910000e-127 464.0
27 TraesCS1D01G335500 chr1A 81.511 622 49 28 4322 4931 521259919 521260486 7.720000e-123 451.0
28 TraesCS1D01G335500 chr1A 88.489 278 28 2 1551 1824 367003221 367002944 2.920000e-87 333.0
29 TraesCS1D01G335500 chr1A 82.917 240 17 8 1387 1614 588681722 588681949 1.440000e-45 195.0
30 TraesCS1D01G335500 chr1A 92.308 117 9 0 4128 4244 517762188 517762304 3.130000e-37 167.0
31 TraesCS1D01G335500 chr1A 96.809 94 3 0 1832 1925 517629207 517629300 1.880000e-34 158.0
32 TraesCS1D01G335500 chr4B 81.354 1802 300 20 2223 4006 4891329 4893112 0.000000e+00 1434.0
33 TraesCS1D01G335500 chr4A 90.969 454 35 2 1745 2192 609793073 609792620 1.560000e-169 606.0
34 TraesCS1D01G335500 chr3B 86.170 188 18 4 1803 1990 753238198 753238019 3.990000e-46 196.0
35 TraesCS1D01G335500 chr3D 85.279 197 18 6 1801 1995 565001431 565001618 5.160000e-45 193.0
36 TraesCS1D01G335500 chr3D 97.368 38 1 0 1939 1976 565001428 565001391 1.170000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G335500 chr1D 425671252 425676305 5053 False 9334.000000 9334 100.000000 1 5054 1 chr1D.!!$F2 5053
1 TraesCS1D01G335500 chr1D 425569093 425573045 3952 False 6222.000000 6222 95.171000 1000 4937 1 chr1D.!!$F1 3937
2 TraesCS1D01G335500 chr1D 47987414 47990411 2997 True 3877.000000 3877 89.948000 1068 4110 1 chr1D.!!$R2 3042
3 TraesCS1D01G335500 chr1D 425964172 425965046 874 False 1027.000000 1027 87.879000 4130 5014 1 chr1D.!!$F3 884
4 TraesCS1D01G335500 chr1D 460620866 460621564 698 False 375.500000 527 87.931500 1435 3626 2 chr1D.!!$F4 2191
5 TraesCS1D01G335500 chrUn 7463547 7467212 3665 True 5661.000000 5661 94.603000 948 4605 1 chrUn.!!$R1 3657
6 TraesCS1D01G335500 chr1B 575708444 575713753 5309 False 1620.300000 5195 88.366500 422 4991 4 chr1B.!!$F2 4569
7 TraesCS1D01G335500 chr1B 684003652 684004946 1294 True 304.666667 433 81.872000 2363 4127 3 chr1B.!!$R1 1764
8 TraesCS1D01G335500 chr1B 683148439 683150138 1699 False 271.000000 556 85.360250 1005 3894 4 chr1B.!!$F3 2889
9 TraesCS1D01G335500 chr1A 521256565 521264999 8434 False 2228.333333 5096 89.042333 950 4996 3 chr1A.!!$F5 4046
10 TraesCS1D01G335500 chr1A 517634848 517636032 1184 False 1685.000000 1685 92.162000 2937 4146 1 chr1A.!!$F1 1209
11 TraesCS1D01G335500 chr1A 517628381 517630264 1883 False 879.333333 1371 93.524667 948 2943 3 chr1A.!!$F3 1995
12 TraesCS1D01G335500 chr1A 517762188 517764863 2675 False 562.000000 957 90.418500 4128 5030 2 chr1A.!!$F4 902
13 TraesCS1D01G335500 chr1A 289631503 289632152 649 True 464.000000 464 79.732000 3343 4010 1 chr1A.!!$R1 667
14 TraesCS1D01G335500 chr4B 4891329 4893112 1783 False 1434.000000 1434 81.354000 2223 4006 1 chr4B.!!$F1 1783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 406 0.032952 CGTCCATACATACCCGTGGG 59.967 60.0 2.58 2.58 42.03 4.61 F
518 656 0.094046 GCGTTGCACATACGTACCAC 59.906 55.0 10.79 0.00 40.92 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 2290 4.112341 GCGCGGACTACGGTGACT 62.112 66.667 8.83 0.0 44.51 3.41 R
4068 5205 9.559958 CTAAGTGAATTGTGAAATATGAACACC 57.440 33.333 0.00 0.0 34.18 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.084579 CGTGATCGGTGCTGAAGC 58.915 61.111 0.00 0.00 42.50 3.86
75 76 6.820470 GCTGAAGCATTGTTCTAGTACTAG 57.180 41.667 21.87 21.87 41.59 2.57
76 77 5.233263 GCTGAAGCATTGTTCTAGTACTAGC 59.767 44.000 22.87 11.69 41.59 3.42
77 78 6.531503 TGAAGCATTGTTCTAGTACTAGCT 57.468 37.500 22.87 13.64 33.32 3.32
78 79 6.565234 TGAAGCATTGTTCTAGTACTAGCTC 58.435 40.000 22.87 17.49 33.32 4.09
79 80 6.378564 TGAAGCATTGTTCTAGTACTAGCTCT 59.621 38.462 22.87 9.72 33.32 4.09
80 81 7.556635 TGAAGCATTGTTCTAGTACTAGCTCTA 59.443 37.037 22.87 14.95 33.32 2.43
81 82 8.472007 AAGCATTGTTCTAGTACTAGCTCTAT 57.528 34.615 22.87 16.21 33.32 1.98
82 83 8.472007 AGCATTGTTCTAGTACTAGCTCTATT 57.528 34.615 22.87 5.40 33.32 1.73
83 84 8.919145 AGCATTGTTCTAGTACTAGCTCTATTT 58.081 33.333 22.87 9.39 33.32 1.40
88 89 8.834465 TGTTCTAGTACTAGCTCTATTTAACCG 58.166 37.037 22.87 0.00 33.32 4.44
89 90 9.050601 GTTCTAGTACTAGCTCTATTTAACCGA 57.949 37.037 22.87 0.38 33.32 4.69
90 91 9.618890 TTCTAGTACTAGCTCTATTTAACCGAA 57.381 33.333 22.87 6.26 33.32 4.30
91 92 9.270640 TCTAGTACTAGCTCTATTTAACCGAAG 57.729 37.037 22.87 0.00 33.32 3.79
104 105 2.584608 CGAAGGATTCCGGCCAGT 59.415 61.111 2.24 0.00 43.81 4.00
105 106 1.078426 CGAAGGATTCCGGCCAGTT 60.078 57.895 2.24 0.00 43.81 3.16
106 107 1.369091 CGAAGGATTCCGGCCAGTTG 61.369 60.000 2.24 0.00 43.81 3.16
107 108 1.000896 AAGGATTCCGGCCAGTTGG 60.001 57.895 2.24 0.00 38.53 3.77
108 109 1.789576 AAGGATTCCGGCCAGTTGGT 61.790 55.000 2.24 0.00 37.57 3.67
109 110 1.304134 GGATTCCGGCCAGTTGGTT 60.304 57.895 2.24 0.00 37.57 3.67
110 111 1.595093 GGATTCCGGCCAGTTGGTTG 61.595 60.000 2.24 0.00 37.57 3.77
111 112 2.212900 GATTCCGGCCAGTTGGTTGC 62.213 60.000 2.24 0.00 37.57 4.17
114 115 3.591835 CGGCCAGTTGGTTGCGTT 61.592 61.111 2.24 0.00 37.57 4.84
115 116 2.255172 CGGCCAGTTGGTTGCGTTA 61.255 57.895 2.24 0.00 37.57 3.18
116 117 1.579429 GGCCAGTTGGTTGCGTTAG 59.421 57.895 0.00 0.00 37.57 2.34
117 118 0.887387 GGCCAGTTGGTTGCGTTAGA 60.887 55.000 0.00 0.00 37.57 2.10
118 119 0.948678 GCCAGTTGGTTGCGTTAGAA 59.051 50.000 0.00 0.00 37.57 2.10
119 120 1.335496 GCCAGTTGGTTGCGTTAGAAA 59.665 47.619 0.00 0.00 37.57 2.52
120 121 2.223618 GCCAGTTGGTTGCGTTAGAAAA 60.224 45.455 0.00 0.00 37.57 2.29
121 122 3.552068 GCCAGTTGGTTGCGTTAGAAAAT 60.552 43.478 0.00 0.00 37.57 1.82
122 123 4.320641 GCCAGTTGGTTGCGTTAGAAAATA 60.321 41.667 0.00 0.00 37.57 1.40
123 124 5.390613 CCAGTTGGTTGCGTTAGAAAATAG 58.609 41.667 0.00 0.00 0.00 1.73
124 125 5.048991 CCAGTTGGTTGCGTTAGAAAATAGT 60.049 40.000 0.00 0.00 0.00 2.12
125 126 6.148150 CCAGTTGGTTGCGTTAGAAAATAGTA 59.852 38.462 0.00 0.00 0.00 1.82
126 127 7.234384 CAGTTGGTTGCGTTAGAAAATAGTAG 58.766 38.462 0.00 0.00 0.00 2.57
127 128 6.932960 AGTTGGTTGCGTTAGAAAATAGTAGT 59.067 34.615 0.00 0.00 0.00 2.73
128 129 8.090214 AGTTGGTTGCGTTAGAAAATAGTAGTA 58.910 33.333 0.00 0.00 0.00 1.82
129 130 8.378421 GTTGGTTGCGTTAGAAAATAGTAGTAG 58.622 37.037 0.00 0.00 0.00 2.57
130 131 7.605449 TGGTTGCGTTAGAAAATAGTAGTAGT 58.395 34.615 0.00 0.00 0.00 2.73
131 132 8.739039 TGGTTGCGTTAGAAAATAGTAGTAGTA 58.261 33.333 0.00 0.00 0.00 1.82
132 133 9.014533 GGTTGCGTTAGAAAATAGTAGTAGTAC 57.985 37.037 0.00 0.00 0.00 2.73
133 134 9.780413 GTTGCGTTAGAAAATAGTAGTAGTACT 57.220 33.333 14.57 14.57 42.49 2.73
148 149 5.866159 GTAGTACTACTACCCATTTGCCT 57.134 43.478 23.17 0.00 43.96 4.75
149 150 6.231258 GTAGTACTACTACCCATTTGCCTT 57.769 41.667 23.17 0.00 43.96 4.35
150 151 5.354842 AGTACTACTACCCATTTGCCTTC 57.645 43.478 0.00 0.00 0.00 3.46
151 152 5.030820 AGTACTACTACCCATTTGCCTTCT 58.969 41.667 0.00 0.00 0.00 2.85
152 153 6.200114 AGTACTACTACCCATTTGCCTTCTA 58.800 40.000 0.00 0.00 0.00 2.10
153 154 5.354842 ACTACTACCCATTTGCCTTCTAC 57.645 43.478 0.00 0.00 0.00 2.59
154 155 5.030820 ACTACTACCCATTTGCCTTCTACT 58.969 41.667 0.00 0.00 0.00 2.57
155 156 4.489306 ACTACCCATTTGCCTTCTACTC 57.511 45.455 0.00 0.00 0.00 2.59
156 157 2.808906 ACCCATTTGCCTTCTACTCC 57.191 50.000 0.00 0.00 0.00 3.85
157 158 1.992557 ACCCATTTGCCTTCTACTCCA 59.007 47.619 0.00 0.00 0.00 3.86
158 159 2.025887 ACCCATTTGCCTTCTACTCCAG 60.026 50.000 0.00 0.00 0.00 3.86
159 160 2.025887 CCCATTTGCCTTCTACTCCAGT 60.026 50.000 0.00 0.00 0.00 4.00
160 161 3.562176 CCCATTTGCCTTCTACTCCAGTT 60.562 47.826 0.00 0.00 0.00 3.16
161 162 4.082125 CCATTTGCCTTCTACTCCAGTTT 58.918 43.478 0.00 0.00 0.00 2.66
162 163 5.253330 CCATTTGCCTTCTACTCCAGTTTA 58.747 41.667 0.00 0.00 0.00 2.01
163 164 5.123979 CCATTTGCCTTCTACTCCAGTTTAC 59.876 44.000 0.00 0.00 0.00 2.01
164 165 4.967084 TTGCCTTCTACTCCAGTTTACA 57.033 40.909 0.00 0.00 0.00 2.41
165 166 4.537135 TGCCTTCTACTCCAGTTTACAG 57.463 45.455 0.00 0.00 0.00 2.74
166 167 3.260884 TGCCTTCTACTCCAGTTTACAGG 59.739 47.826 0.00 0.00 0.00 4.00
167 168 3.514309 GCCTTCTACTCCAGTTTACAGGA 59.486 47.826 0.00 0.00 0.00 3.86
172 173 2.100605 CTCCAGTTTACAGGAGCACC 57.899 55.000 8.19 0.00 41.68 5.01
173 174 1.347707 CTCCAGTTTACAGGAGCACCA 59.652 52.381 8.19 0.00 41.68 4.17
174 175 1.771854 TCCAGTTTACAGGAGCACCAA 59.228 47.619 2.07 0.00 38.94 3.67
175 176 2.154462 CCAGTTTACAGGAGCACCAAG 58.846 52.381 2.07 0.00 38.94 3.61
176 177 1.537202 CAGTTTACAGGAGCACCAAGC 59.463 52.381 2.07 0.00 46.19 4.01
186 187 2.804167 CACCAAGCCAACGTGCAA 59.196 55.556 0.36 0.00 0.00 4.08
187 188 1.588667 CACCAAGCCAACGTGCAAC 60.589 57.895 0.36 0.00 0.00 4.17
188 189 2.027460 CCAAGCCAACGTGCAACC 59.973 61.111 0.36 0.00 0.00 3.77
189 190 2.027460 CAAGCCAACGTGCAACCC 59.973 61.111 0.36 0.00 0.00 4.11
190 191 3.591835 AAGCCAACGTGCAACCCG 61.592 61.111 0.36 0.00 0.00 5.28
193 194 2.666862 CCAACGTGCAACCCGCTA 60.667 61.111 0.00 0.00 43.06 4.26
194 195 2.038269 CCAACGTGCAACCCGCTAT 61.038 57.895 0.00 0.00 43.06 2.97
195 196 1.423845 CAACGTGCAACCCGCTATC 59.576 57.895 0.00 0.00 43.06 2.08
196 197 1.019278 CAACGTGCAACCCGCTATCT 61.019 55.000 0.00 0.00 43.06 1.98
197 198 0.533491 AACGTGCAACCCGCTATCTA 59.467 50.000 0.00 0.00 43.06 1.98
198 199 0.750850 ACGTGCAACCCGCTATCTAT 59.249 50.000 0.00 0.00 43.06 1.98
199 200 1.269621 ACGTGCAACCCGCTATCTATC 60.270 52.381 0.00 0.00 43.06 2.08
200 201 1.269569 CGTGCAACCCGCTATCTATCA 60.270 52.381 0.00 0.00 43.06 2.15
201 202 2.610479 CGTGCAACCCGCTATCTATCAT 60.610 50.000 0.00 0.00 43.06 2.45
202 203 3.403038 GTGCAACCCGCTATCTATCATT 58.597 45.455 0.00 0.00 43.06 2.57
203 204 3.815401 GTGCAACCCGCTATCTATCATTT 59.185 43.478 0.00 0.00 43.06 2.32
204 205 4.065088 TGCAACCCGCTATCTATCATTTC 58.935 43.478 0.00 0.00 43.06 2.17
205 206 3.123621 GCAACCCGCTATCTATCATTTCG 59.876 47.826 0.00 0.00 37.77 3.46
206 207 2.960819 ACCCGCTATCTATCATTTCGC 58.039 47.619 0.00 0.00 0.00 4.70
207 208 2.299013 ACCCGCTATCTATCATTTCGCA 59.701 45.455 0.00 0.00 0.00 5.10
208 209 3.244078 ACCCGCTATCTATCATTTCGCAA 60.244 43.478 0.00 0.00 0.00 4.85
209 210 3.745975 CCCGCTATCTATCATTTCGCAAA 59.254 43.478 0.00 0.00 0.00 3.68
210 211 4.213270 CCCGCTATCTATCATTTCGCAAAA 59.787 41.667 0.00 0.00 0.00 2.44
211 212 5.277779 CCCGCTATCTATCATTTCGCAAAAA 60.278 40.000 0.00 0.00 0.00 1.94
248 249 1.852942 CGTTATCCATCGGAGTGGTG 58.147 55.000 6.42 0.00 40.27 4.17
249 250 1.583054 GTTATCCATCGGAGTGGTGC 58.417 55.000 6.42 0.00 40.27 5.01
250 251 0.468226 TTATCCATCGGAGTGGTGCC 59.532 55.000 6.42 0.00 40.27 5.01
251 252 0.689412 TATCCATCGGAGTGGTGCCA 60.689 55.000 6.42 0.00 40.27 4.92
252 253 2.257409 ATCCATCGGAGTGGTGCCAC 62.257 60.000 13.13 13.13 46.50 5.01
266 267 3.039134 CCACTTGGCCGTTGGAAC 58.961 61.111 10.91 0.00 0.00 3.62
276 277 3.365265 GTTGGAACGGCCCTGCAG 61.365 66.667 6.78 6.78 34.97 4.41
280 281 4.704833 GAACGGCCCTGCAGCAGA 62.705 66.667 24.90 0.00 32.44 4.26
281 282 4.269523 AACGGCCCTGCAGCAGAA 62.270 61.111 24.90 0.00 32.44 3.02
282 283 3.790416 AACGGCCCTGCAGCAGAAA 62.790 57.895 24.90 0.00 32.44 2.52
283 284 2.985282 CGGCCCTGCAGCAGAAAA 60.985 61.111 24.90 0.00 32.44 2.29
284 285 2.653115 GGCCCTGCAGCAGAAAAC 59.347 61.111 24.90 9.44 32.44 2.43
285 286 2.202395 GGCCCTGCAGCAGAAAACA 61.202 57.895 24.90 0.00 32.44 2.83
286 287 1.006922 GCCCTGCAGCAGAAAACAC 60.007 57.895 24.90 2.47 32.44 3.32
287 288 1.662044 CCCTGCAGCAGAAAACACC 59.338 57.895 24.90 0.00 32.44 4.16
288 289 0.825010 CCCTGCAGCAGAAAACACCT 60.825 55.000 24.90 0.00 32.44 4.00
289 290 0.313043 CCTGCAGCAGAAAACACCTG 59.687 55.000 24.90 0.00 32.44 4.00
290 291 1.311859 CTGCAGCAGAAAACACCTGA 58.688 50.000 18.42 0.00 32.44 3.86
291 292 1.002033 CTGCAGCAGAAAACACCTGAC 60.002 52.381 18.42 0.00 32.44 3.51
292 293 0.312102 GCAGCAGAAAACACCTGACC 59.688 55.000 0.00 0.00 33.65 4.02
293 294 0.954452 CAGCAGAAAACACCTGACCC 59.046 55.000 0.00 0.00 33.65 4.46
294 295 0.550914 AGCAGAAAACACCTGACCCA 59.449 50.000 0.00 0.00 33.65 4.51
295 296 0.954452 GCAGAAAACACCTGACCCAG 59.046 55.000 0.00 0.00 33.65 4.45
304 305 2.742372 CTGACCCAGGAAACCGCG 60.742 66.667 0.00 0.00 0.00 6.46
305 306 3.530910 CTGACCCAGGAAACCGCGT 62.531 63.158 4.92 0.00 0.00 6.01
306 307 2.741211 GACCCAGGAAACCGCGTC 60.741 66.667 4.92 0.00 0.00 5.19
307 308 4.324991 ACCCAGGAAACCGCGTCC 62.325 66.667 4.92 5.62 35.17 4.79
308 309 4.323477 CCCAGGAAACCGCGTCCA 62.323 66.667 15.70 0.00 37.65 4.02
309 310 2.046314 CCAGGAAACCGCGTCCAT 60.046 61.111 15.70 0.00 37.65 3.41
310 311 2.106683 CCAGGAAACCGCGTCCATC 61.107 63.158 15.70 3.76 37.65 3.51
311 312 2.125673 AGGAAACCGCGTCCATCG 60.126 61.111 15.70 0.00 37.65 3.84
312 313 2.125832 GGAAACCGCGTCCATCGA 60.126 61.111 4.92 0.00 42.86 3.59
313 314 2.450345 GGAAACCGCGTCCATCGAC 61.450 63.158 4.92 0.00 42.86 4.20
326 327 4.747529 TCGACGCCGACGAGAGGA 62.748 66.667 7.70 0.00 43.93 3.71
327 328 4.517703 CGACGCCGACGAGAGGAC 62.518 72.222 2.16 0.00 43.93 3.85
328 329 3.126225 GACGCCGACGAGAGGACT 61.126 66.667 0.00 0.00 43.93 3.85
329 330 2.672307 ACGCCGACGAGAGGACTT 60.672 61.111 0.00 0.00 43.93 3.01
330 331 2.202492 CGCCGACGAGAGGACTTG 60.202 66.667 0.00 0.00 43.93 3.16
331 332 2.182030 GCCGACGAGAGGACTTGG 59.818 66.667 0.00 0.00 32.13 3.61
332 333 2.182030 CCGACGAGAGGACTTGGC 59.818 66.667 0.00 0.00 32.36 4.52
333 334 2.344203 CCGACGAGAGGACTTGGCT 61.344 63.158 0.00 0.00 33.51 4.75
334 335 1.137825 CGACGAGAGGACTTGGCTC 59.862 63.158 0.00 0.00 33.51 4.70
335 336 1.587043 CGACGAGAGGACTTGGCTCA 61.587 60.000 0.00 0.00 33.51 4.26
336 337 0.172352 GACGAGAGGACTTGGCTCAG 59.828 60.000 0.00 0.00 32.94 3.35
337 338 1.153667 CGAGAGGACTTGGCTCAGC 60.154 63.158 0.00 0.00 0.00 4.26
376 377 4.101790 CACGGCGCCGCTTTCATT 62.102 61.111 46.22 24.65 44.19 2.57
377 378 3.361977 ACGGCGCCGCTTTCATTT 61.362 55.556 46.22 23.82 44.19 2.32
378 379 2.576847 CGGCGCCGCTTTCATTTC 60.577 61.111 38.48 0.00 0.00 2.17
379 380 2.877691 GGCGCCGCTTTCATTTCT 59.122 55.556 12.58 0.00 0.00 2.52
380 381 1.212751 GGCGCCGCTTTCATTTCTT 59.787 52.632 12.58 0.00 0.00 2.52
381 382 0.798389 GGCGCCGCTTTCATTTCTTC 60.798 55.000 12.58 0.00 0.00 2.87
382 383 0.109781 GCGCCGCTTTCATTTCTTCA 60.110 50.000 0.00 0.00 0.00 3.02
383 384 1.606606 CGCCGCTTTCATTTCTTCAC 58.393 50.000 0.00 0.00 0.00 3.18
384 385 1.729149 CGCCGCTTTCATTTCTTCACC 60.729 52.381 0.00 0.00 0.00 4.02
385 386 1.729149 GCCGCTTTCATTTCTTCACCG 60.729 52.381 0.00 0.00 0.00 4.94
386 387 1.606606 CGCTTTCATTTCTTCACCGC 58.393 50.000 0.00 0.00 0.00 5.68
387 388 1.606606 GCTTTCATTTCTTCACCGCG 58.393 50.000 0.00 0.00 0.00 6.46
388 389 1.069227 GCTTTCATTTCTTCACCGCGT 60.069 47.619 4.92 0.00 0.00 6.01
389 390 2.839474 CTTTCATTTCTTCACCGCGTC 58.161 47.619 4.92 0.00 0.00 5.19
390 391 1.153353 TTCATTTCTTCACCGCGTCC 58.847 50.000 4.92 0.00 0.00 4.79
391 392 0.034198 TCATTTCTTCACCGCGTCCA 59.966 50.000 4.92 0.00 0.00 4.02
392 393 1.086696 CATTTCTTCACCGCGTCCAT 58.913 50.000 4.92 0.00 0.00 3.41
393 394 2.093921 TCATTTCTTCACCGCGTCCATA 60.094 45.455 4.92 0.00 0.00 2.74
394 395 1.717194 TTTCTTCACCGCGTCCATAC 58.283 50.000 4.92 0.00 0.00 2.39
395 396 0.604073 TTCTTCACCGCGTCCATACA 59.396 50.000 4.92 0.00 0.00 2.29
396 397 0.821517 TCTTCACCGCGTCCATACAT 59.178 50.000 4.92 0.00 0.00 2.29
397 398 2.025898 TCTTCACCGCGTCCATACATA 58.974 47.619 4.92 0.00 0.00 2.29
398 399 2.124903 CTTCACCGCGTCCATACATAC 58.875 52.381 4.92 0.00 0.00 2.39
399 400 0.386476 TCACCGCGTCCATACATACC 59.614 55.000 4.92 0.00 0.00 2.73
400 401 0.599204 CACCGCGTCCATACATACCC 60.599 60.000 4.92 0.00 0.00 3.69
401 402 1.372499 CCGCGTCCATACATACCCG 60.372 63.158 4.92 0.00 0.00 5.28
402 403 1.361271 CGCGTCCATACATACCCGT 59.639 57.895 0.00 0.00 0.00 5.28
403 404 0.937699 CGCGTCCATACATACCCGTG 60.938 60.000 0.00 0.00 0.00 4.94
404 405 0.599204 GCGTCCATACATACCCGTGG 60.599 60.000 0.00 0.00 0.00 4.94
405 406 0.032952 CGTCCATACATACCCGTGGG 59.967 60.000 2.58 2.58 42.03 4.61
406 407 0.250166 GTCCATACATACCCGTGGGC 60.250 60.000 4.41 0.00 39.32 5.36
407 408 1.072505 CCATACATACCCGTGGGCC 59.927 63.158 4.41 0.00 39.32 5.80
408 409 1.701031 CCATACATACCCGTGGGCCA 61.701 60.000 0.00 0.00 39.32 5.36
409 410 0.400213 CATACATACCCGTGGGCCAT 59.600 55.000 10.70 0.00 39.32 4.40
410 411 0.690762 ATACATACCCGTGGGCCATC 59.309 55.000 10.70 2.34 39.32 3.51
411 412 1.750341 TACATACCCGTGGGCCATCG 61.750 60.000 10.70 15.34 39.32 3.84
412 413 2.766651 ATACCCGTGGGCCATCGT 60.767 61.111 10.70 8.98 39.32 3.73
413 414 2.803817 ATACCCGTGGGCCATCGTC 61.804 63.158 10.70 0.00 39.32 4.20
415 416 4.402528 CCCGTGGGCCATCGTCAA 62.403 66.667 10.70 0.00 0.00 3.18
416 417 3.124921 CCGTGGGCCATCGTCAAC 61.125 66.667 10.70 0.00 0.00 3.18
417 418 2.358125 CGTGGGCCATCGTCAACA 60.358 61.111 10.70 0.00 0.00 3.33
418 419 2.677003 CGTGGGCCATCGTCAACAC 61.677 63.158 10.70 0.00 0.00 3.32
419 420 2.033448 TGGGCCATCGTCAACACC 59.967 61.111 0.00 0.00 0.00 4.16
420 421 2.351276 GGGCCATCGTCAACACCT 59.649 61.111 4.39 0.00 0.00 4.00
421 422 2.040544 GGGCCATCGTCAACACCTG 61.041 63.158 4.39 0.00 0.00 4.00
422 423 1.003839 GGCCATCGTCAACACCTGA 60.004 57.895 0.00 0.00 0.00 3.86
423 424 0.605319 GGCCATCGTCAACACCTGAA 60.605 55.000 0.00 0.00 35.22 3.02
424 425 0.517316 GCCATCGTCAACACCTGAAC 59.483 55.000 0.00 0.00 35.22 3.18
425 426 1.156736 CCATCGTCAACACCTGAACC 58.843 55.000 0.00 0.00 35.22 3.62
429 430 0.790207 CGTCAACACCTGAACCGATG 59.210 55.000 0.00 0.00 35.22 3.84
478 479 5.978322 GTCGACATACATACCCTTTCTCTTC 59.022 44.000 11.55 0.00 0.00 2.87
484 485 8.164070 ACATACATACCCTTTCTCTTCTGTTTT 58.836 33.333 0.00 0.00 0.00 2.43
485 486 6.884280 ACATACCCTTTCTCTTCTGTTTTG 57.116 37.500 0.00 0.00 0.00 2.44
489 627 6.605471 ACCCTTTCTCTTCTGTTTTGTTTT 57.395 33.333 0.00 0.00 0.00 2.43
508 646 4.057224 CCACTAAGGCGTTGCACA 57.943 55.556 0.97 0.00 0.00 4.57
509 647 2.555123 CCACTAAGGCGTTGCACAT 58.445 52.632 0.97 0.00 0.00 3.21
510 648 1.732941 CCACTAAGGCGTTGCACATA 58.267 50.000 0.97 0.00 0.00 2.29
511 649 1.396996 CCACTAAGGCGTTGCACATAC 59.603 52.381 0.97 0.00 0.00 2.39
512 650 1.060553 CACTAAGGCGTTGCACATACG 59.939 52.381 5.06 5.06 41.71 3.06
513 651 1.337447 ACTAAGGCGTTGCACATACGT 60.337 47.619 10.79 0.00 40.92 3.57
514 652 2.094597 ACTAAGGCGTTGCACATACGTA 60.095 45.455 10.79 0.00 40.92 3.57
515 653 1.073177 AAGGCGTTGCACATACGTAC 58.927 50.000 10.79 5.04 40.92 3.67
516 654 0.738412 AGGCGTTGCACATACGTACC 60.738 55.000 10.79 4.91 40.92 3.34
517 655 1.015085 GGCGTTGCACATACGTACCA 61.015 55.000 10.79 0.00 40.92 3.25
518 656 0.094046 GCGTTGCACATACGTACCAC 59.906 55.000 10.79 0.00 40.92 4.16
519 657 1.420378 CGTTGCACATACGTACCACA 58.580 50.000 0.00 0.00 34.47 4.17
524 679 3.776340 TGCACATACGTACCACATACTG 58.224 45.455 0.00 0.00 0.00 2.74
551 706 1.908065 AAAACAACGTTGCAGCTGTC 58.092 45.000 27.61 8.39 0.00 3.51
552 707 1.094785 AAACAACGTTGCAGCTGTCT 58.905 45.000 27.61 2.90 0.00 3.41
553 708 0.378257 AACAACGTTGCAGCTGTCTG 59.622 50.000 27.61 5.73 43.16 3.51
567 1010 3.002656 AGCTGTCTGAAAACATTCACACG 59.997 43.478 0.00 0.00 0.00 4.49
581 1024 8.594881 AACATTCACACGGCAAAAATTATTTA 57.405 26.923 0.00 0.00 0.00 1.40
607 1050 2.132517 TTTGTGTGGAGCGCATGCAG 62.133 55.000 19.57 11.69 46.23 4.41
697 1165 2.844451 GCAACGGCTGCCTTGACAA 61.844 57.895 25.12 0.00 46.13 3.18
698 1166 1.008538 CAACGGCTGCCTTGACAAC 60.009 57.895 17.92 0.00 0.00 3.32
699 1167 1.453015 AACGGCTGCCTTGACAACA 60.453 52.632 17.92 0.00 0.00 3.33
700 1168 1.447317 AACGGCTGCCTTGACAACAG 61.447 55.000 17.92 0.00 34.48 3.16
702 1170 1.845809 CGGCTGCCTTGACAACAGAC 61.846 60.000 17.92 5.91 36.03 3.51
704 1172 0.819259 GCTGCCTTGACAACAGACCA 60.819 55.000 9.39 0.00 33.10 4.02
706 1174 0.819259 TGCCTTGACAACAGACCAGC 60.819 55.000 0.00 0.00 0.00 4.85
708 1176 1.233019 CCTTGACAACAGACCAGCAG 58.767 55.000 0.00 0.00 0.00 4.24
710 1178 2.224281 CCTTGACAACAGACCAGCAGTA 60.224 50.000 0.00 0.00 0.00 2.74
711 1179 3.466836 CTTGACAACAGACCAGCAGTAA 58.533 45.455 0.00 0.00 0.00 2.24
712 1180 3.552132 TGACAACAGACCAGCAGTAAA 57.448 42.857 0.00 0.00 0.00 2.01
713 1181 3.466836 TGACAACAGACCAGCAGTAAAG 58.533 45.455 0.00 0.00 0.00 1.85
714 1182 3.118408 TGACAACAGACCAGCAGTAAAGT 60.118 43.478 0.00 0.00 0.00 2.66
715 1183 4.100344 TGACAACAGACCAGCAGTAAAGTA 59.900 41.667 0.00 0.00 0.00 2.24
716 1184 4.632153 ACAACAGACCAGCAGTAAAGTAG 58.368 43.478 0.00 0.00 0.00 2.57
717 1185 3.320673 ACAGACCAGCAGTAAAGTAGC 57.679 47.619 0.00 0.00 0.00 3.58
718 1186 2.900546 ACAGACCAGCAGTAAAGTAGCT 59.099 45.455 0.00 0.00 39.63 3.32
721 1189 4.153117 CAGACCAGCAGTAAAGTAGCTTTG 59.847 45.833 0.00 0.00 36.26 2.77
725 1193 4.320494 CCAGCAGTAAAGTAGCTTTGGTTG 60.320 45.833 0.00 3.24 36.26 3.77
738 1206 5.056480 AGCTTTGGTTGGTTTTAATTCTGC 58.944 37.500 0.00 0.00 0.00 4.26
742 1210 2.986479 GGTTGGTTTTAATTCTGCTGCG 59.014 45.455 0.00 0.00 0.00 5.18
746 1214 2.986479 GGTTTTAATTCTGCTGCGTTGG 59.014 45.455 0.00 0.00 0.00 3.77
756 1224 2.876879 CTGCGTTGGCGTCACGAAA 61.877 57.895 14.54 0.00 44.10 3.46
757 1225 2.127758 GCGTTGGCGTCACGAAAG 60.128 61.111 14.54 0.00 40.81 2.62
760 1228 0.302288 CGTTGGCGTCACGAAAGAAA 59.698 50.000 0.00 0.00 0.00 2.52
762 1230 1.595794 GTTGGCGTCACGAAAGAAAGA 59.404 47.619 0.00 0.00 0.00 2.52
763 1231 1.497991 TGGCGTCACGAAAGAAAGAG 58.502 50.000 0.00 0.00 0.00 2.85
765 1233 2.132762 GGCGTCACGAAAGAAAGAGAA 58.867 47.619 0.00 0.00 0.00 2.87
767 1235 2.155924 GCGTCACGAAAGAAAGAGAAGG 59.844 50.000 0.00 0.00 0.00 3.46
768 1236 3.639538 CGTCACGAAAGAAAGAGAAGGA 58.360 45.455 0.00 0.00 0.00 3.36
770 1238 3.741856 GTCACGAAAGAAAGAGAAGGACC 59.258 47.826 0.00 0.00 0.00 4.46
771 1239 3.641906 TCACGAAAGAAAGAGAAGGACCT 59.358 43.478 0.00 0.00 0.00 3.85
773 1241 3.246619 CGAAAGAAAGAGAAGGACCTCG 58.753 50.000 0.00 0.00 38.19 4.63
788 1256 1.753078 CTCGATCACTCCCCGTCCA 60.753 63.158 0.00 0.00 0.00 4.02
821 1289 3.869272 CGAGGCGGTTCATGCAGC 61.869 66.667 0.00 0.00 0.00 5.25
822 1290 3.869272 GAGGCGGTTCATGCAGCG 61.869 66.667 12.62 12.62 40.67 5.18
835 1323 1.138247 GCAGCGGCTTCATTTCCAG 59.862 57.895 0.00 0.00 36.96 3.86
846 1334 5.809719 CTTCATTTCCAGGAAGCTTACTC 57.190 43.478 8.71 0.00 34.69 2.59
847 1335 5.495640 CTTCATTTCCAGGAAGCTTACTCT 58.504 41.667 8.71 0.00 34.69 3.24
848 1336 4.836825 TCATTTCCAGGAAGCTTACTCTG 58.163 43.478 8.71 12.01 0.00 3.35
849 1337 4.287067 TCATTTCCAGGAAGCTTACTCTGT 59.713 41.667 8.71 0.00 0.00 3.41
850 1338 4.706842 TTTCCAGGAAGCTTACTCTGTT 57.293 40.909 8.71 0.00 0.00 3.16
851 1339 3.963428 TCCAGGAAGCTTACTCTGTTC 57.037 47.619 8.71 0.00 0.00 3.18
852 1340 2.567615 TCCAGGAAGCTTACTCTGTTCC 59.432 50.000 8.71 0.00 39.08 3.62
854 1342 3.769844 CCAGGAAGCTTACTCTGTTCCTA 59.230 47.826 8.71 0.00 45.78 2.94
855 1343 4.382147 CCAGGAAGCTTACTCTGTTCCTAC 60.382 50.000 8.71 0.00 45.78 3.18
856 1344 3.770388 AGGAAGCTTACTCTGTTCCTACC 59.230 47.826 4.98 0.00 45.70 3.18
857 1345 3.118702 GGAAGCTTACTCTGTTCCTACCC 60.119 52.174 0.00 0.00 36.34 3.69
858 1346 3.185880 AGCTTACTCTGTTCCTACCCA 57.814 47.619 0.00 0.00 0.00 4.51
859 1347 3.517612 AGCTTACTCTGTTCCTACCCAA 58.482 45.455 0.00 0.00 0.00 4.12
863 1351 5.710567 GCTTACTCTGTTCCTACCCAATTTT 59.289 40.000 0.00 0.00 0.00 1.82
878 1366 7.765695 ACCCAATTTTGCCTCATATATACAG 57.234 36.000 0.00 0.00 0.00 2.74
879 1367 6.721208 ACCCAATTTTGCCTCATATATACAGG 59.279 38.462 5.49 5.49 0.00 4.00
880 1368 6.947733 CCCAATTTTGCCTCATATATACAGGA 59.052 38.462 12.15 0.00 0.00 3.86
881 1369 7.094205 CCCAATTTTGCCTCATATATACAGGAC 60.094 40.741 12.15 5.77 0.00 3.85
882 1370 7.448161 CCAATTTTGCCTCATATATACAGGACA 59.552 37.037 12.15 7.69 0.00 4.02
883 1371 8.509690 CAATTTTGCCTCATATATACAGGACAG 58.490 37.037 12.15 0.00 0.00 3.51
898 1386 1.407851 GGACAGGATTCAGCTGCATCA 60.408 52.381 24.65 0.00 0.00 3.07
916 1404 3.228188 TCAATCAAACCCAGCAGTTCT 57.772 42.857 0.00 0.00 0.00 3.01
917 1405 3.565307 TCAATCAAACCCAGCAGTTCTT 58.435 40.909 0.00 0.00 0.00 2.52
918 1406 3.569701 TCAATCAAACCCAGCAGTTCTTC 59.430 43.478 0.00 0.00 0.00 2.87
919 1407 2.727123 TCAAACCCAGCAGTTCTTCA 57.273 45.000 0.00 0.00 0.00 3.02
920 1408 3.228188 TCAAACCCAGCAGTTCTTCAT 57.772 42.857 0.00 0.00 0.00 2.57
921 1409 3.565307 TCAAACCCAGCAGTTCTTCATT 58.435 40.909 0.00 0.00 0.00 2.57
922 1410 3.318839 TCAAACCCAGCAGTTCTTCATTG 59.681 43.478 0.00 0.00 0.00 2.82
923 1411 2.957402 ACCCAGCAGTTCTTCATTGA 57.043 45.000 0.00 0.00 0.00 2.57
924 1412 2.508526 ACCCAGCAGTTCTTCATTGAC 58.491 47.619 0.00 0.00 0.00 3.18
926 1414 3.327757 ACCCAGCAGTTCTTCATTGACTA 59.672 43.478 0.00 0.00 0.00 2.59
953 1493 2.348998 CTCCCCGCAGCTCTTGTT 59.651 61.111 0.00 0.00 0.00 2.83
1030 1576 3.047718 GACGTCCTGATCGCCGTGA 62.048 63.158 3.51 0.00 33.03 4.35
1172 1725 4.020617 CCTGCCACGGAGGAGCAA 62.021 66.667 0.00 0.00 41.22 3.91
1173 1726 2.743928 CTGCCACGGAGGAGCAAC 60.744 66.667 0.00 0.00 41.22 4.17
1174 1727 3.241530 TGCCACGGAGGAGCAACT 61.242 61.111 0.00 0.00 41.22 3.16
3031 3671 1.003839 GACAACATCCTCACGGCCA 60.004 57.895 2.24 0.00 0.00 5.36
3675 4777 3.255379 GCGTTCCAGATCGCCGTC 61.255 66.667 11.14 0.00 45.54 4.79
3836 4943 1.002134 CCGGGGTGCTCAAGAACAT 60.002 57.895 0.00 0.00 0.00 2.71
4068 5205 3.124128 CCTCATGATTCATTCATACCGCG 59.876 47.826 0.00 0.00 43.40 6.46
4091 5238 6.611381 CGGTGTTCATATTTCACAATTCACT 58.389 36.000 0.00 0.00 34.27 3.41
4353 11849 1.876416 CGTGTTGACCGAGGGAACAAT 60.876 52.381 9.60 0.00 31.62 2.71
4358 11854 1.275291 TGACCGAGGGAACAATCTGAC 59.725 52.381 0.00 0.00 0.00 3.51
4456 11954 3.119779 TCAAACACACGTTGGTCCTTTTC 60.120 43.478 0.00 0.00 34.86 2.29
4619 12131 5.776519 TCAAACTTTTGACAATGTTGCAC 57.223 34.783 0.07 0.00 41.88 4.57
4620 12132 5.233225 TCAAACTTTTGACAATGTTGCACA 58.767 33.333 0.07 0.00 41.88 4.57
4626 12138 1.069091 TGACAATGTTGCACAGCATCG 60.069 47.619 0.23 0.00 38.76 3.84
4646 12158 2.777913 GGTTCCCTCCTATCTTCCCTT 58.222 52.381 0.00 0.00 0.00 3.95
4659 12173 6.441924 CCTATCTTCCCTTAGCATCCATCTTA 59.558 42.308 0.00 0.00 0.00 2.10
4667 12181 6.147821 CCCTTAGCATCCATCTTAACATTACG 59.852 42.308 0.00 0.00 0.00 3.18
4679 12193 1.165270 ACATTACGAGGCAAGTTGGC 58.835 50.000 21.16 21.16 44.10 4.52
4766 12280 1.554160 AGCTGTTGACAGATGAGAGGG 59.446 52.381 14.98 0.00 46.59 4.30
4874 12389 3.134458 CGCATCACCTCCTTAATCTTCC 58.866 50.000 0.00 0.00 0.00 3.46
4925 12452 3.490419 GCTTTCCTGCAATATGCCTTCAG 60.490 47.826 0.00 0.00 44.23 3.02
4950 12477 9.410556 AGCATTCAAGTTATAACACAATTTGAC 57.589 29.630 17.65 6.87 33.15 3.18
4962 12489 5.531634 ACACAATTTGACTATTGCCACAAG 58.468 37.500 2.79 0.00 38.74 3.16
5030 12557 3.980646 TTCACACGGTCCAGAAAATTG 57.019 42.857 0.00 0.00 0.00 2.32
5031 12558 1.606668 TCACACGGTCCAGAAAATTGC 59.393 47.619 0.00 0.00 0.00 3.56
5032 12559 0.958822 ACACGGTCCAGAAAATTGCC 59.041 50.000 0.00 0.00 0.00 4.52
5033 12560 0.243636 CACGGTCCAGAAAATTGCCC 59.756 55.000 0.00 0.00 0.00 5.36
5034 12561 0.898326 ACGGTCCAGAAAATTGCCCC 60.898 55.000 0.00 0.00 0.00 5.80
5035 12562 1.604147 CGGTCCAGAAAATTGCCCCC 61.604 60.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.084579 GCTTCAGCACCGATCACG 58.915 61.111 0.00 0.00 41.59 4.35
49 50 8.578374 CTAGTACTAGAACAATGCTTCAGCACC 61.578 44.444 23.20 0.00 43.80 5.01
50 51 6.254589 CTAGTACTAGAACAATGCTTCAGCAC 59.745 42.308 23.20 0.00 43.80 4.40
51 52 6.333416 CTAGTACTAGAACAATGCTTCAGCA 58.667 40.000 23.20 3.45 44.50 4.41
52 53 5.233263 GCTAGTACTAGAACAATGCTTCAGC 59.767 44.000 30.09 10.93 37.14 4.26
53 54 6.568869 AGCTAGTACTAGAACAATGCTTCAG 58.431 40.000 30.09 4.76 35.21 3.02
54 55 6.378564 AGAGCTAGTACTAGAACAATGCTTCA 59.621 38.462 30.09 0.00 35.21 3.02
55 56 6.801575 AGAGCTAGTACTAGAACAATGCTTC 58.198 40.000 30.09 13.75 35.21 3.86
56 57 6.783708 AGAGCTAGTACTAGAACAATGCTT 57.216 37.500 30.09 9.50 35.21 3.91
57 58 8.472007 AATAGAGCTAGTACTAGAACAATGCT 57.528 34.615 30.09 19.55 35.21 3.79
62 63 8.834465 CGGTTAAATAGAGCTAGTACTAGAACA 58.166 37.037 30.09 13.57 35.21 3.18
63 64 9.050601 TCGGTTAAATAGAGCTAGTACTAGAAC 57.949 37.037 30.09 20.99 35.21 3.01
64 65 9.618890 TTCGGTTAAATAGAGCTAGTACTAGAA 57.381 33.333 30.09 12.15 35.21 2.10
65 66 9.270640 CTTCGGTTAAATAGAGCTAGTACTAGA 57.729 37.037 30.09 12.15 35.21 2.43
66 67 8.505625 CCTTCGGTTAAATAGAGCTAGTACTAG 58.494 40.741 23.25 23.25 36.29 2.57
67 68 8.213679 TCCTTCGGTTAAATAGAGCTAGTACTA 58.786 37.037 1.89 1.89 0.00 1.82
68 69 7.059156 TCCTTCGGTTAAATAGAGCTAGTACT 58.941 38.462 0.00 0.00 0.00 2.73
69 70 7.269477 TCCTTCGGTTAAATAGAGCTAGTAC 57.731 40.000 0.00 0.00 0.00 2.73
70 71 8.474710 AATCCTTCGGTTAAATAGAGCTAGTA 57.525 34.615 0.00 0.00 0.00 1.82
71 72 6.980416 ATCCTTCGGTTAAATAGAGCTAGT 57.020 37.500 0.00 0.00 0.00 2.57
72 73 6.869388 GGAATCCTTCGGTTAAATAGAGCTAG 59.131 42.308 0.00 0.00 0.00 3.42
73 74 6.516194 CGGAATCCTTCGGTTAAATAGAGCTA 60.516 42.308 0.00 0.00 0.00 3.32
74 75 5.612351 GGAATCCTTCGGTTAAATAGAGCT 58.388 41.667 0.00 0.00 0.00 4.09
75 76 4.448060 CGGAATCCTTCGGTTAAATAGAGC 59.552 45.833 0.00 0.00 0.00 4.09
76 77 4.989168 CCGGAATCCTTCGGTTAAATAGAG 59.011 45.833 0.00 0.00 41.23 2.43
77 78 4.952460 CCGGAATCCTTCGGTTAAATAGA 58.048 43.478 0.00 0.00 41.23 1.98
87 88 1.078426 AACTGGCCGGAATCCTTCG 60.078 57.895 21.41 0.00 0.00 3.79
88 89 1.032114 CCAACTGGCCGGAATCCTTC 61.032 60.000 21.41 0.00 0.00 3.46
89 90 1.000896 CCAACTGGCCGGAATCCTT 60.001 57.895 21.41 0.00 0.00 3.36
90 91 1.789576 AACCAACTGGCCGGAATCCT 61.790 55.000 21.41 0.00 39.32 3.24
91 92 1.304134 AACCAACTGGCCGGAATCC 60.304 57.895 21.41 0.00 39.32 3.01
92 93 1.883021 CAACCAACTGGCCGGAATC 59.117 57.895 21.41 0.00 39.32 2.52
93 94 2.275380 GCAACCAACTGGCCGGAAT 61.275 57.895 21.41 3.26 39.32 3.01
94 95 2.909965 GCAACCAACTGGCCGGAA 60.910 61.111 21.41 0.00 39.32 4.30
97 98 2.182614 CTAACGCAACCAACTGGCCG 62.183 60.000 0.00 0.00 39.32 6.13
98 99 0.887387 TCTAACGCAACCAACTGGCC 60.887 55.000 0.00 0.00 39.32 5.36
99 100 0.948678 TTCTAACGCAACCAACTGGC 59.051 50.000 0.00 0.00 39.32 4.85
100 101 3.701532 TTTTCTAACGCAACCAACTGG 57.298 42.857 0.00 0.00 42.17 4.00
101 102 5.997385 ACTATTTTCTAACGCAACCAACTG 58.003 37.500 0.00 0.00 0.00 3.16
102 103 6.932960 ACTACTATTTTCTAACGCAACCAACT 59.067 34.615 0.00 0.00 0.00 3.16
103 104 7.125536 ACTACTATTTTCTAACGCAACCAAC 57.874 36.000 0.00 0.00 0.00 3.77
104 105 8.090214 ACTACTACTATTTTCTAACGCAACCAA 58.910 33.333 0.00 0.00 0.00 3.67
105 106 7.605449 ACTACTACTATTTTCTAACGCAACCA 58.395 34.615 0.00 0.00 0.00 3.67
106 107 9.014533 GTACTACTACTATTTTCTAACGCAACC 57.985 37.037 0.00 0.00 0.00 3.77
107 108 9.780413 AGTACTACTACTATTTTCTAACGCAAC 57.220 33.333 0.00 0.00 30.81 4.17
127 128 6.200114 AGAAGGCAAATGGGTAGTAGTACTA 58.800 40.000 5.90 5.90 0.00 1.82
128 129 5.030820 AGAAGGCAAATGGGTAGTAGTACT 58.969 41.667 8.14 8.14 0.00 2.73
129 130 5.354842 AGAAGGCAAATGGGTAGTAGTAC 57.645 43.478 0.00 0.00 0.00 2.73
130 131 6.200114 AGTAGAAGGCAAATGGGTAGTAGTA 58.800 40.000 0.00 0.00 0.00 1.82
131 132 5.030820 AGTAGAAGGCAAATGGGTAGTAGT 58.969 41.667 0.00 0.00 0.00 2.73
132 133 5.453480 GGAGTAGAAGGCAAATGGGTAGTAG 60.453 48.000 0.00 0.00 0.00 2.57
133 134 4.407945 GGAGTAGAAGGCAAATGGGTAGTA 59.592 45.833 0.00 0.00 0.00 1.82
134 135 3.200165 GGAGTAGAAGGCAAATGGGTAGT 59.800 47.826 0.00 0.00 0.00 2.73
135 136 3.199946 TGGAGTAGAAGGCAAATGGGTAG 59.800 47.826 0.00 0.00 0.00 3.18
136 137 3.186283 TGGAGTAGAAGGCAAATGGGTA 58.814 45.455 0.00 0.00 0.00 3.69
137 138 1.992557 TGGAGTAGAAGGCAAATGGGT 59.007 47.619 0.00 0.00 0.00 4.51
138 139 2.025887 ACTGGAGTAGAAGGCAAATGGG 60.026 50.000 0.00 0.00 0.00 4.00
139 140 3.356529 ACTGGAGTAGAAGGCAAATGG 57.643 47.619 0.00 0.00 0.00 3.16
140 141 5.705441 TGTAAACTGGAGTAGAAGGCAAATG 59.295 40.000 0.00 0.00 0.00 2.32
141 142 5.876357 TGTAAACTGGAGTAGAAGGCAAAT 58.124 37.500 0.00 0.00 0.00 2.32
142 143 5.298989 TGTAAACTGGAGTAGAAGGCAAA 57.701 39.130 0.00 0.00 0.00 3.68
143 144 4.262894 CCTGTAAACTGGAGTAGAAGGCAA 60.263 45.833 0.00 0.00 37.15 4.52
144 145 3.260884 CCTGTAAACTGGAGTAGAAGGCA 59.739 47.826 0.00 0.00 37.15 4.75
145 146 3.514309 TCCTGTAAACTGGAGTAGAAGGC 59.486 47.826 4.75 0.00 38.77 4.35
154 155 1.429930 TGGTGCTCCTGTAAACTGGA 58.570 50.000 6.34 8.27 40.95 3.86
155 156 2.154462 CTTGGTGCTCCTGTAAACTGG 58.846 52.381 6.34 0.00 36.43 4.00
156 157 1.537202 GCTTGGTGCTCCTGTAAACTG 59.463 52.381 6.34 0.00 38.95 3.16
157 158 1.545651 GGCTTGGTGCTCCTGTAAACT 60.546 52.381 6.34 0.00 42.39 2.66
158 159 0.881796 GGCTTGGTGCTCCTGTAAAC 59.118 55.000 6.34 0.00 42.39 2.01
159 160 0.476338 TGGCTTGGTGCTCCTGTAAA 59.524 50.000 6.34 0.00 42.39 2.01
160 161 0.476338 TTGGCTTGGTGCTCCTGTAA 59.524 50.000 6.34 0.00 42.39 2.41
161 162 0.250727 GTTGGCTTGGTGCTCCTGTA 60.251 55.000 6.34 0.00 42.39 2.74
162 163 1.529244 GTTGGCTTGGTGCTCCTGT 60.529 57.895 6.34 0.00 42.39 4.00
163 164 2.620112 CGTTGGCTTGGTGCTCCTG 61.620 63.158 6.34 0.46 42.39 3.86
164 165 2.281761 CGTTGGCTTGGTGCTCCT 60.282 61.111 6.34 0.00 42.39 3.69
165 166 2.594592 ACGTTGGCTTGGTGCTCC 60.595 61.111 0.00 0.00 42.39 4.70
166 167 2.639286 CACGTTGGCTTGGTGCTC 59.361 61.111 0.00 0.00 42.39 4.26
169 170 1.588667 GTTGCACGTTGGCTTGGTG 60.589 57.895 0.00 0.00 34.85 4.17
170 171 2.781158 GGTTGCACGTTGGCTTGGT 61.781 57.895 0.00 0.00 34.04 3.67
171 172 2.027460 GGTTGCACGTTGGCTTGG 59.973 61.111 0.00 0.00 34.04 3.61
172 173 2.027460 GGGTTGCACGTTGGCTTG 59.973 61.111 0.00 0.00 34.04 4.01
173 174 3.591835 CGGGTTGCACGTTGGCTT 61.592 61.111 0.00 0.00 34.04 4.35
183 184 3.123621 CGAAATGATAGATAGCGGGTTGC 59.876 47.826 0.00 0.00 46.98 4.17
184 185 3.123621 GCGAAATGATAGATAGCGGGTTG 59.876 47.826 0.00 0.00 0.00 3.77
185 186 3.244078 TGCGAAATGATAGATAGCGGGTT 60.244 43.478 0.00 0.00 0.00 4.11
186 187 2.299013 TGCGAAATGATAGATAGCGGGT 59.701 45.455 0.00 0.00 0.00 5.28
187 188 2.959516 TGCGAAATGATAGATAGCGGG 58.040 47.619 0.00 0.00 0.00 6.13
188 189 4.990543 TTTGCGAAATGATAGATAGCGG 57.009 40.909 0.00 0.00 0.00 5.52
229 230 1.852942 CACCACTCCGATGGATAACG 58.147 55.000 7.25 0.00 43.02 3.18
230 231 1.583054 GCACCACTCCGATGGATAAC 58.417 55.000 7.25 0.00 43.02 1.89
231 232 0.468226 GGCACCACTCCGATGGATAA 59.532 55.000 7.25 0.00 43.02 1.75
232 233 0.689412 TGGCACCACTCCGATGGATA 60.689 55.000 7.25 0.00 43.02 2.59
233 234 1.995066 TGGCACCACTCCGATGGAT 60.995 57.895 7.25 0.00 43.02 3.41
234 235 2.606213 TGGCACCACTCCGATGGA 60.606 61.111 7.25 0.00 43.02 3.41
235 236 2.436646 GTGGCACCACTCCGATGG 60.437 66.667 12.66 0.00 46.10 3.51
249 250 3.039134 GTTCCAACGGCCAAGTGG 58.961 61.111 2.24 6.80 38.53 4.00
259 260 3.365265 CTGCAGGGCCGTTCCAAC 61.365 66.667 5.57 0.00 36.21 3.77
263 264 4.704833 TCTGCTGCAGGGCCGTTC 62.705 66.667 27.79 0.00 31.51 3.95
264 265 3.790416 TTTCTGCTGCAGGGCCGTT 62.790 57.895 27.79 0.00 31.51 4.44
265 266 3.790416 TTTTCTGCTGCAGGGCCGT 62.790 57.895 27.79 0.00 31.51 5.68
266 267 2.985282 TTTTCTGCTGCAGGGCCG 60.985 61.111 27.79 4.60 31.51 6.13
267 268 2.202395 TGTTTTCTGCTGCAGGGCC 61.202 57.895 27.79 14.40 31.51 5.80
268 269 1.006922 GTGTTTTCTGCTGCAGGGC 60.007 57.895 27.79 15.81 31.51 5.19
269 270 0.825010 AGGTGTTTTCTGCTGCAGGG 60.825 55.000 27.79 6.17 31.51 4.45
270 271 0.313043 CAGGTGTTTTCTGCTGCAGG 59.687 55.000 27.79 10.85 31.51 4.85
271 272 1.002033 GTCAGGTGTTTTCTGCTGCAG 60.002 52.381 23.31 23.31 32.63 4.41
272 273 1.024271 GTCAGGTGTTTTCTGCTGCA 58.976 50.000 0.88 0.88 32.63 4.41
273 274 0.312102 GGTCAGGTGTTTTCTGCTGC 59.688 55.000 0.00 0.00 32.63 5.25
274 275 0.954452 GGGTCAGGTGTTTTCTGCTG 59.046 55.000 0.00 0.00 32.63 4.41
275 276 0.550914 TGGGTCAGGTGTTTTCTGCT 59.449 50.000 0.00 0.00 32.63 4.24
276 277 0.954452 CTGGGTCAGGTGTTTTCTGC 59.046 55.000 0.00 0.00 32.63 4.26
277 278 1.609208 CCTGGGTCAGGTGTTTTCTG 58.391 55.000 5.82 0.00 45.82 3.02
287 288 2.742372 CGCGGTTTCCTGGGTCAG 60.742 66.667 0.00 0.00 0.00 3.51
288 289 3.524648 GACGCGGTTTCCTGGGTCA 62.525 63.158 12.47 0.00 44.64 4.02
289 290 2.741211 GACGCGGTTTCCTGGGTC 60.741 66.667 12.47 3.43 40.19 4.46
290 291 4.324991 GGACGCGGTTTCCTGGGT 62.325 66.667 12.47 0.00 0.00 4.51
291 292 3.622060 ATGGACGCGGTTTCCTGGG 62.622 63.158 12.47 0.00 33.84 4.45
292 293 2.046314 ATGGACGCGGTTTCCTGG 60.046 61.111 12.47 0.00 33.84 4.45
293 294 2.452813 CGATGGACGCGGTTTCCTG 61.453 63.158 12.47 0.00 33.84 3.86
294 295 2.125673 CGATGGACGCGGTTTCCT 60.126 61.111 12.47 0.00 33.84 3.36
295 296 2.125832 TCGATGGACGCGGTTTCC 60.126 61.111 12.47 9.47 42.26 3.13
296 297 3.078560 GTCGATGGACGCGGTTTC 58.921 61.111 12.47 0.00 42.26 2.78
309 310 4.747529 TCCTCTCGTCGGCGTCGA 62.748 66.667 25.64 25.64 43.86 4.20
310 311 4.517703 GTCCTCTCGTCGGCGTCG 62.518 72.222 19.85 19.85 39.49 5.12
311 312 2.688794 AAGTCCTCTCGTCGGCGTC 61.689 63.158 10.18 0.00 39.49 5.19
312 313 2.672307 AAGTCCTCTCGTCGGCGT 60.672 61.111 10.18 0.00 39.49 5.68
313 314 2.202492 CAAGTCCTCTCGTCGGCG 60.202 66.667 1.15 1.15 39.92 6.46
314 315 2.182030 CCAAGTCCTCTCGTCGGC 59.818 66.667 0.00 0.00 0.00 5.54
315 316 2.182030 GCCAAGTCCTCTCGTCGG 59.818 66.667 0.00 0.00 0.00 4.79
316 317 1.137825 GAGCCAAGTCCTCTCGTCG 59.862 63.158 0.00 0.00 0.00 5.12
317 318 0.172352 CTGAGCCAAGTCCTCTCGTC 59.828 60.000 0.00 0.00 0.00 4.20
318 319 1.882989 GCTGAGCCAAGTCCTCTCGT 61.883 60.000 0.00 0.00 0.00 4.18
319 320 1.153667 GCTGAGCCAAGTCCTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
320 321 4.930592 GCTGAGCCAAGTCCTCTC 57.069 61.111 0.00 0.00 0.00 3.20
359 360 3.609214 AAATGAAAGCGGCGCCGTG 62.609 57.895 45.02 23.55 42.09 4.94
360 361 3.322706 GAAATGAAAGCGGCGCCGT 62.323 57.895 45.02 30.65 42.09 5.68
361 362 2.527547 AAGAAATGAAAGCGGCGCCG 62.528 55.000 43.13 43.13 43.09 6.46
362 363 0.798389 GAAGAAATGAAAGCGGCGCC 60.798 55.000 30.40 19.07 0.00 6.53
363 364 0.109781 TGAAGAAATGAAAGCGGCGC 60.110 50.000 26.86 26.86 0.00 6.53
364 365 1.606606 GTGAAGAAATGAAAGCGGCG 58.393 50.000 0.51 0.51 0.00 6.46
365 366 1.729149 CGGTGAAGAAATGAAAGCGGC 60.729 52.381 0.00 0.00 0.00 6.53
366 367 1.729149 GCGGTGAAGAAATGAAAGCGG 60.729 52.381 0.00 0.00 32.74 5.52
367 368 1.606606 GCGGTGAAGAAATGAAAGCG 58.393 50.000 0.00 0.00 35.05 4.68
368 369 1.069227 ACGCGGTGAAGAAATGAAAGC 60.069 47.619 12.47 0.00 0.00 3.51
369 370 2.412847 GGACGCGGTGAAGAAATGAAAG 60.413 50.000 12.47 0.00 0.00 2.62
370 371 1.533731 GGACGCGGTGAAGAAATGAAA 59.466 47.619 12.47 0.00 0.00 2.69
371 372 1.153353 GGACGCGGTGAAGAAATGAA 58.847 50.000 12.47 0.00 0.00 2.57
372 373 0.034198 TGGACGCGGTGAAGAAATGA 59.966 50.000 12.47 0.00 0.00 2.57
373 374 1.086696 ATGGACGCGGTGAAGAAATG 58.913 50.000 12.47 0.00 0.00 2.32
374 375 2.277084 GTATGGACGCGGTGAAGAAAT 58.723 47.619 12.47 0.00 0.00 2.17
375 376 1.001068 TGTATGGACGCGGTGAAGAAA 59.999 47.619 12.47 0.00 0.00 2.52
376 377 0.604073 TGTATGGACGCGGTGAAGAA 59.396 50.000 12.47 0.00 0.00 2.52
377 378 0.821517 ATGTATGGACGCGGTGAAGA 59.178 50.000 12.47 0.00 0.00 2.87
378 379 2.124903 GTATGTATGGACGCGGTGAAG 58.875 52.381 12.47 0.00 0.00 3.02
379 380 1.202440 GGTATGTATGGACGCGGTGAA 60.202 52.381 12.47 0.00 0.00 3.18
380 381 0.386476 GGTATGTATGGACGCGGTGA 59.614 55.000 12.47 0.00 0.00 4.02
381 382 0.599204 GGGTATGTATGGACGCGGTG 60.599 60.000 12.47 0.00 0.00 4.94
382 383 1.744014 GGGTATGTATGGACGCGGT 59.256 57.895 12.47 0.00 0.00 5.68
383 384 1.372499 CGGGTATGTATGGACGCGG 60.372 63.158 12.47 0.00 45.19 6.46
384 385 4.238385 CGGGTATGTATGGACGCG 57.762 61.111 3.53 3.53 43.97 6.01
385 386 0.599204 CCACGGGTATGTATGGACGC 60.599 60.000 0.00 0.00 33.80 5.19
386 387 0.032952 CCCACGGGTATGTATGGACG 59.967 60.000 0.00 0.00 33.80 4.79
387 388 0.250166 GCCCACGGGTATGTATGGAC 60.250 60.000 3.54 0.00 37.65 4.02
388 389 1.412453 GGCCCACGGGTATGTATGGA 61.412 60.000 3.54 0.00 37.65 3.41
389 390 1.072505 GGCCCACGGGTATGTATGG 59.927 63.158 3.54 0.00 37.65 2.74
390 391 0.400213 ATGGCCCACGGGTATGTATG 59.600 55.000 0.00 0.00 37.65 2.39
391 392 0.690762 GATGGCCCACGGGTATGTAT 59.309 55.000 0.00 0.00 37.65 2.29
392 393 1.750341 CGATGGCCCACGGGTATGTA 61.750 60.000 0.00 0.00 37.65 2.29
393 394 2.915869 GATGGCCCACGGGTATGT 59.084 61.111 0.00 0.00 37.65 2.29
394 395 2.280797 CGATGGCCCACGGGTATG 60.281 66.667 0.00 0.00 37.65 2.39
395 396 2.766651 ACGATGGCCCACGGGTAT 60.767 61.111 19.74 0.00 37.65 2.73
396 397 3.463585 GACGATGGCCCACGGGTA 61.464 66.667 19.74 0.00 37.65 3.69
398 399 4.402528 TTGACGATGGCCCACGGG 62.403 66.667 19.74 0.00 38.57 5.28
399 400 3.124921 GTTGACGATGGCCCACGG 61.125 66.667 19.74 1.60 0.00 4.94
400 401 2.358125 TGTTGACGATGGCCCACG 60.358 61.111 15.36 15.36 0.00 4.94
401 402 2.332654 GGTGTTGACGATGGCCCAC 61.333 63.158 0.00 0.00 0.00 4.61
402 403 2.033448 GGTGTTGACGATGGCCCA 59.967 61.111 0.00 0.00 0.00 5.36
403 404 2.040544 CAGGTGTTGACGATGGCCC 61.041 63.158 0.00 0.00 0.00 5.80
404 405 0.605319 TTCAGGTGTTGACGATGGCC 60.605 55.000 0.00 0.00 34.94 5.36
405 406 0.517316 GTTCAGGTGTTGACGATGGC 59.483 55.000 0.00 0.00 34.94 4.40
406 407 1.156736 GGTTCAGGTGTTGACGATGG 58.843 55.000 0.00 0.00 34.94 3.51
407 408 0.790207 CGGTTCAGGTGTTGACGATG 59.210 55.000 0.00 0.00 34.94 3.84
408 409 0.677288 TCGGTTCAGGTGTTGACGAT 59.323 50.000 0.00 0.00 34.94 3.73
409 410 0.677288 ATCGGTTCAGGTGTTGACGA 59.323 50.000 0.00 0.00 38.27 4.20
410 411 0.790207 CATCGGTTCAGGTGTTGACG 59.210 55.000 0.00 0.00 34.94 4.35
411 412 1.156736 CCATCGGTTCAGGTGTTGAC 58.843 55.000 0.00 0.00 34.94 3.18
412 413 1.001974 CTCCATCGGTTCAGGTGTTGA 59.998 52.381 0.00 0.00 0.00 3.18
413 414 1.442769 CTCCATCGGTTCAGGTGTTG 58.557 55.000 0.00 0.00 0.00 3.33
414 415 0.321653 GCTCCATCGGTTCAGGTGTT 60.322 55.000 0.00 0.00 0.00 3.32
415 416 1.296715 GCTCCATCGGTTCAGGTGT 59.703 57.895 0.00 0.00 0.00 4.16
416 417 0.321564 TTGCTCCATCGGTTCAGGTG 60.322 55.000 0.00 0.00 0.00 4.00
417 418 0.620556 ATTGCTCCATCGGTTCAGGT 59.379 50.000 0.00 0.00 0.00 4.00
418 419 1.755179 AATTGCTCCATCGGTTCAGG 58.245 50.000 0.00 0.00 0.00 3.86
419 420 3.242870 GCTTAATTGCTCCATCGGTTCAG 60.243 47.826 0.00 0.00 0.00 3.02
420 421 2.682856 GCTTAATTGCTCCATCGGTTCA 59.317 45.455 0.00 0.00 0.00 3.18
421 422 2.945668 AGCTTAATTGCTCCATCGGTTC 59.054 45.455 0.00 0.00 39.34 3.62
422 423 3.004752 AGCTTAATTGCTCCATCGGTT 57.995 42.857 0.00 0.00 39.34 4.44
423 424 2.684881 CAAGCTTAATTGCTCCATCGGT 59.315 45.455 0.00 0.00 43.24 4.69
424 425 2.033801 CCAAGCTTAATTGCTCCATCGG 59.966 50.000 0.00 0.00 43.24 4.18
425 426 2.684881 ACCAAGCTTAATTGCTCCATCG 59.315 45.455 0.00 0.00 43.24 3.84
429 430 2.096013 GTCGACCAAGCTTAATTGCTCC 59.904 50.000 3.51 0.00 43.24 4.70
458 459 6.875972 ACAGAAGAGAAAGGGTATGTATGT 57.124 37.500 0.00 0.00 0.00 2.29
460 461 8.164070 ACAAAACAGAAGAGAAAGGGTATGTAT 58.836 33.333 0.00 0.00 0.00 2.29
461 462 7.514721 ACAAAACAGAAGAGAAAGGGTATGTA 58.485 34.615 0.00 0.00 0.00 2.29
466 467 6.398095 CAAAACAAAACAGAAGAGAAAGGGT 58.602 36.000 0.00 0.00 0.00 4.34
501 639 4.032445 CAGTATGTGGTACGTATGTGCAAC 59.968 45.833 3.85 3.85 38.38 4.17
542 697 2.950975 TGAATGTTTTCAGACAGCTGCA 59.049 40.909 15.27 0.62 42.01 4.41
544 699 4.556942 TGTGAATGTTTTCAGACAGCTG 57.443 40.909 13.48 13.48 42.41 4.24
551 706 2.772568 TGCCGTGTGAATGTTTTCAG 57.227 45.000 0.00 0.00 42.41 3.02
552 707 3.510388 TTTGCCGTGTGAATGTTTTCA 57.490 38.095 0.00 0.00 39.54 2.69
553 708 4.849111 TTTTTGCCGTGTGAATGTTTTC 57.151 36.364 0.00 0.00 0.00 2.29
590 1033 3.051479 CTGCATGCGCTCCACACA 61.051 61.111 14.09 0.00 39.64 3.72
591 1034 3.807538 CCTGCATGCGCTCCACAC 61.808 66.667 14.09 0.00 39.64 3.82
599 1042 2.108514 CCACAGTACCCTGCATGCG 61.109 63.158 14.09 7.87 42.81 4.73
623 1089 2.092882 GCGGACGAACCTTCTTCGG 61.093 63.158 7.34 0.00 45.34 4.30
681 1149 1.447317 CTGTTGTCAAGGCAGCCGTT 61.447 55.000 5.55 0.00 0.00 4.44
684 1152 1.518903 GGTCTGTTGTCAAGGCAGCC 61.519 60.000 1.84 1.84 0.00 4.85
686 1154 1.233019 CTGGTCTGTTGTCAAGGCAG 58.767 55.000 0.00 0.00 0.00 4.85
691 1159 3.552132 TTACTGCTGGTCTGTTGTCAA 57.448 42.857 0.00 0.00 0.00 3.18
693 1161 3.467803 ACTTTACTGCTGGTCTGTTGTC 58.532 45.455 0.00 0.00 0.00 3.18
697 1165 2.900546 AGCTACTTTACTGCTGGTCTGT 59.099 45.455 0.00 0.00 35.54 3.41
698 1166 3.601443 AGCTACTTTACTGCTGGTCTG 57.399 47.619 0.00 0.00 35.54 3.51
699 1167 4.319177 CAAAGCTACTTTACTGCTGGTCT 58.681 43.478 0.00 0.00 37.11 3.85
700 1168 3.437049 CCAAAGCTACTTTACTGCTGGTC 59.563 47.826 0.00 0.00 37.11 4.02
702 1170 3.412386 ACCAAAGCTACTTTACTGCTGG 58.588 45.455 0.00 0.00 37.11 4.85
704 1172 3.821033 CCAACCAAAGCTACTTTACTGCT 59.179 43.478 0.00 0.00 38.87 4.24
706 1174 5.767816 AACCAACCAAAGCTACTTTACTG 57.232 39.130 0.00 0.00 31.96 2.74
708 1176 9.537192 AATTAAAACCAACCAAAGCTACTTTAC 57.463 29.630 0.00 0.00 31.96 2.01
710 1178 8.482943 AGAATTAAAACCAACCAAAGCTACTTT 58.517 29.630 0.00 0.00 33.58 2.66
711 1179 7.926018 CAGAATTAAAACCAACCAAAGCTACTT 59.074 33.333 0.00 0.00 0.00 2.24
712 1180 7.433680 CAGAATTAAAACCAACCAAAGCTACT 58.566 34.615 0.00 0.00 0.00 2.57
713 1181 6.145534 GCAGAATTAAAACCAACCAAAGCTAC 59.854 38.462 0.00 0.00 0.00 3.58
714 1182 6.041523 AGCAGAATTAAAACCAACCAAAGCTA 59.958 34.615 0.00 0.00 0.00 3.32
715 1183 5.056480 GCAGAATTAAAACCAACCAAAGCT 58.944 37.500 0.00 0.00 0.00 3.74
716 1184 5.050159 CAGCAGAATTAAAACCAACCAAAGC 60.050 40.000 0.00 0.00 0.00 3.51
717 1185 5.050159 GCAGCAGAATTAAAACCAACCAAAG 60.050 40.000 0.00 0.00 0.00 2.77
718 1186 4.813697 GCAGCAGAATTAAAACCAACCAAA 59.186 37.500 0.00 0.00 0.00 3.28
721 1189 2.986479 CGCAGCAGAATTAAAACCAACC 59.014 45.455 0.00 0.00 0.00 3.77
725 1193 2.986479 CCAACGCAGCAGAATTAAAACC 59.014 45.455 0.00 0.00 0.00 3.27
738 1206 2.748546 CTTTCGTGACGCCAACGCAG 62.749 60.000 0.00 0.00 45.53 5.18
742 1210 1.595794 TCTTTCTTTCGTGACGCCAAC 59.404 47.619 0.00 0.00 0.00 3.77
746 1214 2.155924 CCTTCTCTTTCTTTCGTGACGC 59.844 50.000 0.00 0.00 0.00 5.19
756 1224 3.445805 GTGATCGAGGTCCTTCTCTTTCT 59.554 47.826 0.00 0.00 0.00 2.52
757 1225 3.445805 AGTGATCGAGGTCCTTCTCTTTC 59.554 47.826 0.00 0.00 0.00 2.62
760 1228 2.650322 GAGTGATCGAGGTCCTTCTCT 58.350 52.381 0.00 0.00 0.00 3.10
762 1230 1.686741 GGGAGTGATCGAGGTCCTTCT 60.687 57.143 0.00 0.00 0.00 2.85
763 1231 0.747852 GGGAGTGATCGAGGTCCTTC 59.252 60.000 0.00 0.00 0.00 3.46
765 1233 1.075896 GGGGAGTGATCGAGGTCCT 60.076 63.158 0.00 0.00 0.00 3.85
767 1235 1.726533 GACGGGGAGTGATCGAGGTC 61.727 65.000 0.00 0.00 0.00 3.85
768 1236 1.753463 GACGGGGAGTGATCGAGGT 60.753 63.158 0.00 0.00 0.00 3.85
770 1238 1.320344 TTGGACGGGGAGTGATCGAG 61.320 60.000 0.00 0.00 0.00 4.04
771 1239 1.304630 TTGGACGGGGAGTGATCGA 60.305 57.895 0.00 0.00 0.00 3.59
773 1241 1.153628 CGTTGGACGGGGAGTGATC 60.154 63.158 0.00 0.00 38.08 2.92
815 1283 0.966875 TGGAAATGAAGCCGCTGCAT 60.967 50.000 8.18 8.18 41.13 3.96
817 1285 1.138247 CTGGAAATGAAGCCGCTGC 59.862 57.895 0.00 0.00 37.95 5.25
818 1286 0.677731 TCCTGGAAATGAAGCCGCTG 60.678 55.000 0.00 0.00 0.00 5.18
819 1287 0.038166 TTCCTGGAAATGAAGCCGCT 59.962 50.000 6.68 0.00 0.00 5.52
835 1323 3.118702 GGGTAGGAACAGAGTAAGCTTCC 60.119 52.174 0.00 0.00 33.57 3.46
843 1331 3.826729 GCAAAATTGGGTAGGAACAGAGT 59.173 43.478 0.00 0.00 0.00 3.24
845 1333 3.161866 GGCAAAATTGGGTAGGAACAGA 58.838 45.455 0.00 0.00 0.00 3.41
846 1334 3.165071 AGGCAAAATTGGGTAGGAACAG 58.835 45.455 0.00 0.00 0.00 3.16
847 1335 3.161866 GAGGCAAAATTGGGTAGGAACA 58.838 45.455 0.00 0.00 0.00 3.18
848 1336 3.161866 TGAGGCAAAATTGGGTAGGAAC 58.838 45.455 0.00 0.00 0.00 3.62
849 1337 3.534357 TGAGGCAAAATTGGGTAGGAA 57.466 42.857 0.00 0.00 0.00 3.36
850 1338 3.756082 ATGAGGCAAAATTGGGTAGGA 57.244 42.857 0.00 0.00 0.00 2.94
851 1339 7.888021 TGTATATATGAGGCAAAATTGGGTAGG 59.112 37.037 0.00 0.00 0.00 3.18
852 1340 8.862325 TGTATATATGAGGCAAAATTGGGTAG 57.138 34.615 0.00 0.00 0.00 3.18
853 1341 7.888021 CCTGTATATATGAGGCAAAATTGGGTA 59.112 37.037 0.00 0.00 0.00 3.69
854 1342 6.721208 CCTGTATATATGAGGCAAAATTGGGT 59.279 38.462 0.00 0.00 0.00 4.51
855 1343 6.947733 TCCTGTATATATGAGGCAAAATTGGG 59.052 38.462 7.47 0.00 0.00 4.12
856 1344 7.448161 TGTCCTGTATATATGAGGCAAAATTGG 59.552 37.037 7.47 0.00 0.00 3.16
857 1345 8.394971 TGTCCTGTATATATGAGGCAAAATTG 57.605 34.615 7.47 0.00 0.00 2.32
858 1346 7.667219 CCTGTCCTGTATATATGAGGCAAAATT 59.333 37.037 7.47 0.00 0.00 1.82
859 1347 7.017551 TCCTGTCCTGTATATATGAGGCAAAAT 59.982 37.037 7.47 0.00 0.00 1.82
863 1351 5.010708 TCCTGTCCTGTATATATGAGGCA 57.989 43.478 7.47 7.93 0.00 4.75
878 1366 1.307097 GATGCAGCTGAATCCTGTCC 58.693 55.000 22.60 0.00 32.93 4.02
879 1367 2.034104 TGATGCAGCTGAATCCTGTC 57.966 50.000 28.53 8.68 32.93 3.51
880 1368 2.502142 TTGATGCAGCTGAATCCTGT 57.498 45.000 28.53 0.00 32.93 4.00
881 1369 2.949644 TGATTGATGCAGCTGAATCCTG 59.050 45.455 28.53 0.00 0.00 3.86
882 1370 3.292492 TGATTGATGCAGCTGAATCCT 57.708 42.857 28.53 17.57 0.00 3.24
883 1371 4.110482 GTTTGATTGATGCAGCTGAATCC 58.890 43.478 28.53 15.70 0.00 3.01
898 1386 3.565307 TGAAGAACTGCTGGGTTTGATT 58.435 40.909 0.00 0.00 0.00 2.57
916 1404 4.299155 GAGGCGATCGATTAGTCAATGAA 58.701 43.478 21.57 0.00 0.00 2.57
917 1405 3.305403 GGAGGCGATCGATTAGTCAATGA 60.305 47.826 21.57 0.00 0.00 2.57
918 1406 2.989840 GGAGGCGATCGATTAGTCAATG 59.010 50.000 21.57 0.00 0.00 2.82
919 1407 2.028930 GGGAGGCGATCGATTAGTCAAT 60.029 50.000 21.57 0.00 0.00 2.57
920 1408 1.340248 GGGAGGCGATCGATTAGTCAA 59.660 52.381 21.57 0.00 0.00 3.18
921 1409 0.959553 GGGAGGCGATCGATTAGTCA 59.040 55.000 21.57 0.00 0.00 3.41
922 1410 0.244178 GGGGAGGCGATCGATTAGTC 59.756 60.000 21.57 6.68 0.00 2.59
923 1411 1.524863 CGGGGAGGCGATCGATTAGT 61.525 60.000 21.57 0.00 0.00 2.24
924 1412 1.213013 CGGGGAGGCGATCGATTAG 59.787 63.158 21.57 0.00 0.00 1.73
926 1414 4.301027 GCGGGGAGGCGATCGATT 62.301 66.667 21.57 5.24 0.00 3.34
944 1468 5.240013 AGAAGGATGAGAAAACAAGAGCT 57.760 39.130 0.00 0.00 0.00 4.09
953 1493 1.208052 CCAGGCGAGAAGGATGAGAAA 59.792 52.381 0.00 0.00 0.00 2.52
1077 1623 4.073200 GCCTTGCGCCATTGCCTT 62.073 61.111 4.18 0.00 0.00 4.35
1172 1725 1.076923 ATGGCGACGTAGGAGGAGT 60.077 57.895 0.00 0.00 0.00 3.85
1173 1726 1.101635 TGATGGCGACGTAGGAGGAG 61.102 60.000 0.00 0.00 0.00 3.69
1174 1727 0.681887 TTGATGGCGACGTAGGAGGA 60.682 55.000 0.00 0.00 0.00 3.71
1674 2290 4.112341 GCGCGGACTACGGTGACT 62.112 66.667 8.83 0.00 44.51 3.41
4068 5205 9.559958 CTAAGTGAATTGTGAAATATGAACACC 57.440 33.333 0.00 0.00 34.18 4.16
4091 5238 9.905713 AATGTATGAAAGAATCACCTAAGCTAA 57.094 29.630 0.00 0.00 41.93 3.09
4126 5280 4.927425 TGGAGTTCGACAAGTAATTACTGC 59.073 41.667 18.70 10.35 36.50 4.40
4456 11954 4.199432 AGTTTCAGAGCTATCACACCTG 57.801 45.455 0.00 0.00 0.00 4.00
4522 12024 3.826729 ACCCAACCAGATCTTAAAAGCAC 59.173 43.478 0.00 0.00 0.00 4.40
4646 12158 6.455647 CCTCGTAATGTTAAGATGGATGCTA 58.544 40.000 0.00 0.00 0.00 3.49
4659 12173 1.539827 GCCAACTTGCCTCGTAATGTT 59.460 47.619 0.00 0.00 0.00 2.71
4679 12193 4.494091 AATACCACTGGACTCATTCTGG 57.506 45.455 0.71 0.00 0.00 3.86
4766 12280 1.087771 CGGTGATAGTTGTTCGCCCC 61.088 60.000 0.00 0.00 40.03 5.80
4874 12389 4.691216 CAGAGGAAAACTTTAAGGAGTCGG 59.309 45.833 0.00 0.00 0.00 4.79
4925 12452 9.410556 AGTCAAATTGTGTTATAACTTGAATGC 57.589 29.630 16.33 6.41 0.00 3.56
4950 12477 2.787473 TGACCCTCTTGTGGCAATAG 57.213 50.000 0.00 0.00 0.00 1.73
4962 12489 3.933861 ACACATTCCCTTATGACCCTC 57.066 47.619 0.00 0.00 0.00 4.30
5016 12543 1.604147 GGGGGCAATTTTCTGGACCG 61.604 60.000 0.00 0.00 0.00 4.79
5017 12544 2.286826 GGGGGCAATTTTCTGGACC 58.713 57.895 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.