Multiple sequence alignment - TraesCS1D01G335400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G335400 chr1D 100.000 5063 0 0 1 5063 425568094 425573156 0.000000e+00 9350.0
1 TraesCS1D01G335400 chr1D 95.171 3976 131 23 1000 4952 425672251 425676188 0.000000e+00 6222.0
2 TraesCS1D01G335400 chr1D 89.460 3036 241 30 1068 4094 47990411 47987446 0.000000e+00 3760.0
3 TraesCS1D01G335400 chr1D 87.148 817 81 11 4141 4952 425964172 425964969 0.000000e+00 905.0
4 TraesCS1D01G335400 chr1D 89.461 427 37 2 3217 3635 460621138 460621564 2.680000e-147 532.0
5 TraesCS1D01G335400 chr1D 89.637 193 20 0 3764 3956 47983003 47982811 3.910000e-61 246.0
6 TraesCS1D01G335400 chr1D 85.022 227 16 9 1434 1643 460620856 460621081 1.100000e-51 215.0
7 TraesCS1D01G335400 chr1A 92.959 4346 223 33 1 4294 521255610 521259924 0.000000e+00 6253.0
8 TraesCS1D01G335400 chr1A 91.763 1214 69 15 2946 4157 517634848 517636032 0.000000e+00 1659.0
9 TraesCS1D01G335400 chr1A 92.593 945 60 6 2011 2952 517629327 517630264 0.000000e+00 1349.0
10 TraesCS1D01G335400 chr1A 86.010 965 68 30 859 1801 517628290 517629209 0.000000e+00 972.0
11 TraesCS1D01G335400 chr1A 88.183 787 69 13 4177 4952 521264167 521264940 0.000000e+00 917.0
12 TraesCS1D01G335400 chr1A 88.056 720 69 9 4241 4952 517764060 517764770 0.000000e+00 837.0
13 TraesCS1D01G335400 chr1A 89.589 365 28 7 4699 5063 521260248 521260602 5.980000e-124 455.0
14 TraesCS1D01G335400 chr1A 78.987 671 117 12 3352 4019 289632152 289631503 2.160000e-118 436.0
15 TraesCS1D01G335400 chr1A 87.050 278 32 2 1560 1833 367003221 367002944 1.370000e-80 311.0
16 TraesCS1D01G335400 chr1A 86.275 255 24 2 4427 4671 521259994 521260247 3.010000e-67 267.0
17 TraesCS1D01G335400 chr1A 86.275 204 28 0 1317 1520 367003431 367003228 6.600000e-54 222.0
18 TraesCS1D01G335400 chr1A 84.541 207 15 4 1422 1623 588681755 588681949 6.690000e-44 189.0
19 TraesCS1D01G335400 chr1A 96.809 94 3 0 1841 1934 517629207 517629300 1.890000e-34 158.0
20 TraesCS1D01G335400 chrUn 92.788 3799 185 44 859 4610 7467303 7463547 0.000000e+00 5415.0
21 TraesCS1D01G335400 chrUn 83.932 473 43 22 1 453 7468234 7467775 6.060000e-114 422.0
22 TraesCS1D01G335400 chr1B 94.429 3303 136 13 994 4273 575709540 575712817 0.000000e+00 5036.0
23 TraesCS1D01G335400 chr1B 87.883 718 69 12 4243 4952 575712992 575713699 0.000000e+00 828.0
24 TraesCS1D01G335400 chr1B 86.059 538 46 6 3380 3903 683149616 683150138 7.410000e-153 551.0
25 TraesCS1D01G335400 chr1B 81.752 548 55 18 3511 4049 684004243 684003732 2.820000e-112 416.0
26 TraesCS1D01G335400 chr1B 79.303 488 35 20 2372 2847 684004946 684004513 1.070000e-71 281.0
27 TraesCS1D01G335400 chr1B 89.109 202 18 3 1005 1205 683148439 683148637 1.090000e-61 248.0
28 TraesCS1D01G335400 chr1B 86.408 206 12 3 3206 3403 684004437 684004240 1.430000e-50 211.0
29 TraesCS1D01G335400 chr1B 87.586 145 6 6 3235 3378 683149046 683149179 1.890000e-34 158.0
30 TraesCS1D01G335400 chr1B 80.543 221 16 9 1423 1638 683148738 683148936 1.470000e-30 145.0
31 TraesCS1D01G335400 chr4B 81.410 1802 299 19 2232 4015 4891329 4893112 0.000000e+00 1439.0
32 TraesCS1D01G335400 chr4A 90.969 454 35 2 1754 2201 609793073 609792620 1.560000e-169 606.0
33 TraesCS1D01G335400 chr3B 86.170 188 18 4 1812 1999 753238198 753238019 4.000000e-46 196.0
34 TraesCS1D01G335400 chr3D 85.279 197 18 6 1810 2004 565001431 565001618 5.170000e-45 193.0
35 TraesCS1D01G335400 chr3D 90.385 52 3 2 1935 1985 565001441 565001391 3.270000e-07 67.6
36 TraesCS1D01G335400 chr3A 88.889 108 9 2 1 108 41080100 41080204 4.110000e-26 130.0
37 TraesCS1D01G335400 chr6B 85.185 108 13 3 4955 5062 710107585 710107481 1.930000e-19 108.0
38 TraesCS1D01G335400 chr6B 84.685 111 14 3 4952 5062 710234070 710234177 1.930000e-19 108.0
39 TraesCS1D01G335400 chr6A 84.259 108 15 2 4955 5062 611862130 611862025 2.490000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G335400 chr1D 425568094 425573156 5062 False 9350.000000 9350 100.000000 1 5063 1 chr1D.!!$F1 5062
1 TraesCS1D01G335400 chr1D 425672251 425676188 3937 False 6222.000000 6222 95.171000 1000 4952 1 chr1D.!!$F2 3952
2 TraesCS1D01G335400 chr1D 47987446 47990411 2965 True 3760.000000 3760 89.460000 1068 4094 1 chr1D.!!$R2 3026
3 TraesCS1D01G335400 chr1D 425964172 425964969 797 False 905.000000 905 87.148000 4141 4952 1 chr1D.!!$F3 811
4 TraesCS1D01G335400 chr1D 460620856 460621564 708 False 373.500000 532 87.241500 1434 3635 2 chr1D.!!$F4 2201
5 TraesCS1D01G335400 chr1A 521255610 521264940 9330 False 1973.000000 6253 89.251500 1 5063 4 chr1A.!!$F5 5062
6 TraesCS1D01G335400 chr1A 517634848 517636032 1184 False 1659.000000 1659 91.763000 2946 4157 1 chr1A.!!$F1 1211
7 TraesCS1D01G335400 chr1A 517764060 517764770 710 False 837.000000 837 88.056000 4241 4952 1 chr1A.!!$F2 711
8 TraesCS1D01G335400 chr1A 517628290 517630264 1974 False 826.333333 1349 91.804000 859 2952 3 chr1A.!!$F4 2093
9 TraesCS1D01G335400 chr1A 289631503 289632152 649 True 436.000000 436 78.987000 3352 4019 1 chr1A.!!$R1 667
10 TraesCS1D01G335400 chrUn 7463547 7468234 4687 True 2918.500000 5415 88.360000 1 4610 2 chrUn.!!$R1 4609
11 TraesCS1D01G335400 chr1B 575709540 575713699 4159 False 2932.000000 5036 91.156000 994 4952 2 chr1B.!!$F1 3958
12 TraesCS1D01G335400 chr1B 684003732 684004946 1214 True 302.666667 416 82.487667 2372 4049 3 chr1B.!!$R1 1677
13 TraesCS1D01G335400 chr1B 683148439 683150138 1699 False 275.500000 551 85.824250 1005 3903 4 chr1B.!!$F2 2898
14 TraesCS1D01G335400 chr4B 4891329 4893112 1783 False 1439.000000 1439 81.410000 2232 4015 1 chr4B.!!$F1 1783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 515 0.093026 GCGTCGCAATGTACACACTC 59.907 55.000 13.44 0.0 0.00 3.51 F
953 1092 0.250038 CCGCATCCATTGATCCGTCT 60.250 55.000 0.00 0.0 29.91 4.18 F
998 1140 0.391130 TCTCGCCTGGTTTCCAATCG 60.391 55.000 0.00 0.0 30.80 3.34 F
1653 1871 1.604378 CCAGGCCAAGAGGTTCGAT 59.396 57.895 5.01 0.0 37.19 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1863 0.179000 CTGGCCAGCTTATCGAACCT 59.821 55.000 22.33 0.0 0.00 3.50 R
2598 2827 1.372997 GCTCCTCTTCAACGCGTCA 60.373 57.895 14.44 0.0 0.00 4.35 R
4044 4776 0.758734 ATCATGAGGATTTCCGGCGA 59.241 50.000 9.30 0.0 42.08 5.54 R
4633 9881 1.059006 CCAGGGAAGATGGGAGGGAG 61.059 65.000 0.00 0.0 33.94 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 1.915093 CGTACGTACGCTGGCATTC 59.085 57.895 32.36 0.00 43.14 2.67
120 122 2.514824 GCATTCGGCAGTCTCCCC 60.515 66.667 0.00 0.00 43.97 4.81
121 123 2.202932 CATTCGGCAGTCTCCCCG 60.203 66.667 2.68 2.68 45.64 5.73
125 127 4.697756 CGGCAGTCTCCCCGCAAA 62.698 66.667 0.00 0.00 37.85 3.68
126 128 2.282180 GGCAGTCTCCCCGCAAAA 60.282 61.111 0.00 0.00 0.00 2.44
127 129 1.901464 GGCAGTCTCCCCGCAAAAA 60.901 57.895 0.00 0.00 0.00 1.94
227 229 2.322339 AGAAAAGGAGACCCGGTAGT 57.678 50.000 0.00 0.00 37.58 2.73
228 230 2.177734 AGAAAAGGAGACCCGGTAGTC 58.822 52.381 0.00 0.92 37.58 2.59
232 234 1.377725 GGAGACCCGGTAGTCACGA 60.378 63.158 12.61 0.00 39.34 4.35
278 281 2.803670 CCGCGTGATCGACAACGT 60.804 61.111 19.31 0.00 40.69 3.99
402 419 1.229082 TAGCCAGAACCCGACCAGT 60.229 57.895 0.00 0.00 0.00 4.00
414 432 1.544759 CCGACCAGTTAAGCAAACCCT 60.545 52.381 0.00 0.00 39.03 4.34
415 433 2.227194 CGACCAGTTAAGCAAACCCTT 58.773 47.619 0.00 0.00 39.03 3.95
416 434 2.031157 CGACCAGTTAAGCAAACCCTTG 60.031 50.000 0.00 0.00 39.03 3.61
447 473 1.153823 CGTCGCCGACATCCTTTCT 60.154 57.895 18.40 0.00 35.63 2.52
461 487 0.438830 CTTTCTCGTGCGTGCCTTAC 59.561 55.000 0.00 0.00 0.00 2.34
489 515 0.093026 GCGTCGCAATGTACACACTC 59.907 55.000 13.44 0.00 0.00 3.51
542 576 6.676237 TTGTCTTGTCGTACGTATACCATA 57.324 37.500 16.05 0.00 0.00 2.74
616 710 2.101249 GGTATATGTTCGGTTCGGGTGA 59.899 50.000 0.00 0.00 0.00 4.02
648 742 1.436983 CGCGCTTCCCCTGTAAATCC 61.437 60.000 5.56 0.00 0.00 3.01
657 751 1.219664 CTGTAAATCCCGTCCCGCA 59.780 57.895 0.00 0.00 0.00 5.69
692 791 2.380064 TCCTTGACAGGCCAACAAAT 57.620 45.000 5.01 0.00 40.58 2.32
693 792 3.517296 TCCTTGACAGGCCAACAAATA 57.483 42.857 5.01 0.00 40.58 1.40
748 854 2.956964 GAGGCGATTCGTGGAGCG 60.957 66.667 8.03 0.00 43.01 5.03
838 970 2.096496 CGGCTCCATCAAACTCATCAAC 59.904 50.000 0.00 0.00 0.00 3.18
839 971 2.424956 GGCTCCATCAAACTCATCAACC 59.575 50.000 0.00 0.00 0.00 3.77
848 980 6.729690 TCAAACTCATCAACCAAGGATTTT 57.270 33.333 0.00 0.00 0.00 1.82
849 981 6.748132 TCAAACTCATCAACCAAGGATTTTC 58.252 36.000 0.00 0.00 0.00 2.29
852 984 4.768968 ACTCATCAACCAAGGATTTTCAGG 59.231 41.667 0.00 0.00 0.00 3.86
853 985 3.511146 TCATCAACCAAGGATTTTCAGGC 59.489 43.478 0.00 0.00 0.00 4.85
855 987 3.509442 TCAACCAAGGATTTTCAGGCAT 58.491 40.909 0.00 0.00 0.00 4.40
916 1055 3.971245 CTGCCTAGGAGTTCTTTGACT 57.029 47.619 14.75 0.00 0.00 3.41
918 1057 3.239449 TGCCTAGGAGTTCTTTGACTGA 58.761 45.455 14.75 0.00 0.00 3.41
919 1058 3.840666 TGCCTAGGAGTTCTTTGACTGAT 59.159 43.478 14.75 0.00 0.00 2.90
920 1059 4.081420 TGCCTAGGAGTTCTTTGACTGATC 60.081 45.833 14.75 0.00 0.00 2.92
921 1060 4.677584 CCTAGGAGTTCTTTGACTGATCG 58.322 47.826 1.05 0.00 0.00 3.69
922 1061 2.966050 AGGAGTTCTTTGACTGATCGC 58.034 47.619 0.00 0.00 0.00 4.58
923 1062 2.003301 GGAGTTCTTTGACTGATCGCC 58.997 52.381 0.00 0.00 0.00 5.54
924 1063 1.656095 GAGTTCTTTGACTGATCGCCG 59.344 52.381 0.00 0.00 0.00 6.46
950 1089 2.949106 GCCGCATCCATTGATCCG 59.051 61.111 0.00 0.00 31.79 4.18
953 1092 0.250038 CCGCATCCATTGATCCGTCT 60.250 55.000 0.00 0.00 29.91 4.18
957 1096 2.746142 GCATCCATTGATCCGTCTTCCA 60.746 50.000 0.00 0.00 0.00 3.53
961 1100 2.105477 CCATTGATCCGTCTTCCATCCT 59.895 50.000 0.00 0.00 0.00 3.24
966 1105 3.118629 TGATCCGTCTTCCATCCTTCTTG 60.119 47.826 0.00 0.00 0.00 3.02
967 1106 2.257207 TCCGTCTTCCATCCTTCTTGT 58.743 47.619 0.00 0.00 0.00 3.16
970 1112 3.437049 CCGTCTTCCATCCTTCTTGTTTC 59.563 47.826 0.00 0.00 0.00 2.78
971 1113 4.065088 CGTCTTCCATCCTTCTTGTTTCA 58.935 43.478 0.00 0.00 0.00 2.69
989 1131 1.613630 ATCACCCTTCTCGCCTGGT 60.614 57.895 0.00 0.00 0.00 4.00
992 1134 0.955919 CACCCTTCTCGCCTGGTTTC 60.956 60.000 0.00 0.00 0.00 2.78
994 1136 1.374947 CCTTCTCGCCTGGTTTCCA 59.625 57.895 0.00 0.00 0.00 3.53
996 1138 1.614317 CCTTCTCGCCTGGTTTCCAAT 60.614 52.381 0.00 0.00 30.80 3.16
997 1139 1.740025 CTTCTCGCCTGGTTTCCAATC 59.260 52.381 0.00 0.00 30.80 2.67
998 1140 0.391130 TCTCGCCTGGTTTCCAATCG 60.391 55.000 0.00 0.00 30.80 3.34
1009 1166 2.295904 TCCAATCGGATGGAGTGCA 58.704 52.632 6.06 0.00 44.52 4.57
1305 1502 2.155194 CAAGGAGAAGCGCGACGAG 61.155 63.158 12.10 0.00 0.00 4.18
1569 1782 1.972660 GCCTCAAGGACGGCTGGTAT 61.973 60.000 0.00 0.00 42.98 2.73
1645 1863 2.766925 AACCACAGCCAGGCCAAGA 61.767 57.895 8.22 0.00 0.00 3.02
1653 1871 1.604378 CCAGGCCAAGAGGTTCGAT 59.396 57.895 5.01 0.00 37.19 3.59
1674 1892 2.898738 CTGGCCAGCGAGTCTGAT 59.101 61.111 22.33 0.00 45.72 2.90
1936 2157 2.434185 GAATGCTCGTGACCGCCA 60.434 61.111 0.00 0.00 0.00 5.69
2091 2315 3.923864 TTCACCGTGCTCACCGCT 61.924 61.111 0.00 0.00 40.11 5.52
2598 2827 4.148825 GACCTCGGCATGGACGCT 62.149 66.667 0.00 0.00 32.07 5.07
3180 3422 3.845259 GTCATGGCGCGGTCCCTA 61.845 66.667 8.83 0.00 0.00 3.53
4044 4776 3.030291 GACTCTCCATGACATCCTCACT 58.970 50.000 0.00 0.00 0.00 3.41
4124 4869 8.079211 AGCTTAGGTGATTCTTTCATACTGTA 57.921 34.615 0.00 0.00 36.54 2.74
4162 4909 3.027974 AGTTACTTGTCGAACTCCAGC 57.972 47.619 0.00 0.00 29.85 4.85
4317 9543 8.952278 ACTACATAAATTTAAGGCGTGATTTCA 58.048 29.630 1.21 0.00 0.00 2.69
4318 9544 9.438291 CTACATAAATTTAAGGCGTGATTTCAG 57.562 33.333 1.21 0.12 0.00 3.02
4455 9683 6.845302 TCTAGATGTTCAATCAAACACATGC 58.155 36.000 0.00 0.00 41.65 4.06
4462 9690 1.549203 ATCAAACACATGCTGGTCCC 58.451 50.000 0.00 0.00 0.00 4.46
4492 9723 6.437793 AGGTGTGTATAGCTCTGAAACTAAGT 59.562 38.462 0.00 0.00 0.00 2.24
4500 9731 5.725362 AGCTCTGAAACTAAGTGTGGATAC 58.275 41.667 0.00 0.00 0.00 2.24
4504 9735 8.630917 GCTCTGAAACTAAGTGTGGATACTATA 58.369 37.037 0.00 0.00 37.61 1.31
4545 9783 9.067986 TCGAGACTAATGCTTTAAGATCTGATA 57.932 33.333 0.00 0.00 0.00 2.15
4597 9845 9.807649 GAACATGCTTACATTTTCCATTATTCT 57.192 29.630 0.00 0.00 37.11 2.40
4625 9873 4.869297 TCAAACTTTTGACAATGTTGCAGG 59.131 37.500 0.07 1.38 41.88 4.85
4633 9881 0.459585 CAATGTTGCAGGGCATCAGC 60.460 55.000 7.85 0.00 40.75 4.26
4641 9889 3.883549 GGGCATCAGCTCCCTCCC 61.884 72.222 0.83 0.00 41.70 4.30
4793 10041 1.623811 AGGGCGAACAACTATCACAGT 59.376 47.619 0.00 0.00 40.05 3.55
4835 10084 4.840680 ATCCTGAGTATCATCGGATTCCAA 59.159 41.667 3.09 0.00 44.91 3.53
4853 10102 2.696707 CCAACCATGGCTTCTTGCATAT 59.303 45.455 13.04 0.00 45.15 1.78
4884 10133 3.802948 TCACCTCCTTAATCTTCTCGC 57.197 47.619 0.00 0.00 0.00 5.03
4887 10136 3.108376 ACCTCCTTAATCTTCTCGCCTT 58.892 45.455 0.00 0.00 0.00 4.35
4890 10139 4.500716 CCTCCTTAATCTTCTCGCCTTCTC 60.501 50.000 0.00 0.00 0.00 2.87
4892 10141 3.376540 CTTAATCTTCTCGCCTTCTCGG 58.623 50.000 0.00 0.00 0.00 4.63
4916 10166 5.765677 GCTCCTTAAAGTTTTCCTCTGTCTT 59.234 40.000 0.00 0.00 0.00 3.01
4919 10169 5.241728 CCTTAAAGTTTTCCTCTGTCTTGGG 59.758 44.000 0.00 0.00 0.00 4.12
4924 10174 4.079730 AGTTTTCCTCTGTCTTGGGTTTCT 60.080 41.667 0.00 0.00 0.00 2.52
4934 10184 4.220382 TGTCTTGGGTTTCTTGCAATATGG 59.780 41.667 0.00 0.00 0.00 2.74
4948 10202 6.413783 TGCAATATGGCTTGATCATTCAAT 57.586 33.333 3.19 0.00 40.95 2.57
4952 10206 8.706035 GCAATATGGCTTGATCATTCAATTTAC 58.294 33.333 0.00 0.00 40.95 2.01
4953 10207 9.199982 CAATATGGCTTGATCATTCAATTTACC 57.800 33.333 0.00 0.00 40.95 2.85
4954 10208 6.795144 ATGGCTTGATCATTCAATTTACCA 57.205 33.333 0.00 0.00 40.95 3.25
4955 10209 6.211587 TGGCTTGATCATTCAATTTACCAG 57.788 37.500 0.00 0.00 40.95 4.00
4956 10210 5.716228 TGGCTTGATCATTCAATTTACCAGT 59.284 36.000 0.00 0.00 40.95 4.00
4957 10211 6.889177 TGGCTTGATCATTCAATTTACCAGTA 59.111 34.615 0.00 0.00 40.95 2.74
4958 10212 7.067372 TGGCTTGATCATTCAATTTACCAGTAG 59.933 37.037 0.00 0.00 40.95 2.57
4959 10213 7.420800 GCTTGATCATTCAATTTACCAGTAGG 58.579 38.462 0.00 0.00 40.95 3.18
4960 10214 7.283127 GCTTGATCATTCAATTTACCAGTAGGA 59.717 37.037 0.00 0.00 40.95 2.94
4961 10215 8.737168 TTGATCATTCAATTTACCAGTAGGAG 57.263 34.615 0.00 0.00 36.94 3.69
4962 10216 6.767902 TGATCATTCAATTTACCAGTAGGAGC 59.232 38.462 0.00 0.00 38.69 4.70
4963 10217 6.061022 TCATTCAATTTACCAGTAGGAGCA 57.939 37.500 0.00 0.00 38.69 4.26
4964 10218 6.115446 TCATTCAATTTACCAGTAGGAGCAG 58.885 40.000 0.00 0.00 38.69 4.24
4965 10219 5.499004 TTCAATTTACCAGTAGGAGCAGT 57.501 39.130 0.00 0.00 38.69 4.40
4966 10220 5.499004 TCAATTTACCAGTAGGAGCAGTT 57.501 39.130 0.00 0.00 38.69 3.16
4967 10221 6.614694 TCAATTTACCAGTAGGAGCAGTTA 57.385 37.500 0.00 0.00 38.69 2.24
4968 10222 7.011499 TCAATTTACCAGTAGGAGCAGTTAA 57.989 36.000 0.00 0.00 38.69 2.01
4969 10223 7.103641 TCAATTTACCAGTAGGAGCAGTTAAG 58.896 38.462 0.00 0.00 38.69 1.85
4970 10224 5.416271 TTTACCAGTAGGAGCAGTTAAGG 57.584 43.478 0.00 0.00 38.69 2.69
4971 10225 3.185880 ACCAGTAGGAGCAGTTAAGGA 57.814 47.619 0.00 0.00 38.69 3.36
4972 10226 3.517612 ACCAGTAGGAGCAGTTAAGGAA 58.482 45.455 0.00 0.00 38.69 3.36
4973 10227 3.515901 ACCAGTAGGAGCAGTTAAGGAAG 59.484 47.826 0.00 0.00 38.69 3.46
4974 10228 3.515901 CCAGTAGGAGCAGTTAAGGAAGT 59.484 47.826 0.00 0.00 36.89 3.01
4975 10229 4.499183 CAGTAGGAGCAGTTAAGGAAGTG 58.501 47.826 0.00 0.00 38.79 3.16
4976 10230 4.220821 CAGTAGGAGCAGTTAAGGAAGTGA 59.779 45.833 0.00 0.00 38.12 3.41
4977 10231 5.026790 AGTAGGAGCAGTTAAGGAAGTGAT 58.973 41.667 0.00 0.00 38.12 3.06
4978 10232 4.213564 AGGAGCAGTTAAGGAAGTGATG 57.786 45.455 0.00 0.00 38.12 3.07
4979 10233 3.584848 AGGAGCAGTTAAGGAAGTGATGT 59.415 43.478 0.00 0.00 38.12 3.06
4980 10234 4.042187 AGGAGCAGTTAAGGAAGTGATGTT 59.958 41.667 0.00 0.00 38.12 2.71
4981 10235 4.762251 GGAGCAGTTAAGGAAGTGATGTTT 59.238 41.667 0.00 0.00 38.12 2.83
4982 10236 5.106515 GGAGCAGTTAAGGAAGTGATGTTTC 60.107 44.000 0.00 0.00 38.12 2.78
4983 10237 5.625150 AGCAGTTAAGGAAGTGATGTTTCT 58.375 37.500 0.00 0.00 38.12 2.52
4984 10238 5.471456 AGCAGTTAAGGAAGTGATGTTTCTG 59.529 40.000 0.00 0.00 38.12 3.02
4985 10239 5.239525 GCAGTTAAGGAAGTGATGTTTCTGT 59.760 40.000 0.00 0.00 38.12 3.41
4986 10240 6.238759 GCAGTTAAGGAAGTGATGTTTCTGTT 60.239 38.462 0.00 0.00 38.12 3.16
4987 10241 7.134815 CAGTTAAGGAAGTGATGTTTCTGTTG 58.865 38.462 0.00 0.00 38.12 3.33
4988 10242 7.012327 CAGTTAAGGAAGTGATGTTTCTGTTGA 59.988 37.037 0.00 0.00 38.12 3.18
4989 10243 7.556275 AGTTAAGGAAGTGATGTTTCTGTTGAA 59.444 33.333 0.00 0.00 0.00 2.69
4990 10244 6.382869 AAGGAAGTGATGTTTCTGTTGAAG 57.617 37.500 0.00 0.00 33.28 3.02
4991 10245 5.440610 AGGAAGTGATGTTTCTGTTGAAGT 58.559 37.500 0.00 0.00 33.28 3.01
4992 10246 5.529060 AGGAAGTGATGTTTCTGTTGAAGTC 59.471 40.000 0.00 0.00 33.28 3.01
4993 10247 5.529060 GGAAGTGATGTTTCTGTTGAAGTCT 59.471 40.000 0.00 0.00 33.28 3.24
4994 10248 6.706270 GGAAGTGATGTTTCTGTTGAAGTCTA 59.294 38.462 0.00 0.00 33.28 2.59
4995 10249 7.226720 GGAAGTGATGTTTCTGTTGAAGTCTAA 59.773 37.037 0.00 0.00 33.28 2.10
4996 10250 8.682936 AAGTGATGTTTCTGTTGAAGTCTAAT 57.317 30.769 0.00 0.00 33.28 1.73
4997 10251 8.682936 AGTGATGTTTCTGTTGAAGTCTAATT 57.317 30.769 0.00 0.00 33.28 1.40
4998 10252 9.125026 AGTGATGTTTCTGTTGAAGTCTAATTT 57.875 29.630 0.00 0.00 33.28 1.82
4999 10253 9.736023 GTGATGTTTCTGTTGAAGTCTAATTTT 57.264 29.630 0.00 0.00 33.28 1.82
5025 10279 8.911247 TTTTGTAGCTTTCTTTGAAAGAGTTC 57.089 30.769 20.17 1.70 39.03 3.01
5026 10280 7.865706 TTGTAGCTTTCTTTGAAAGAGTTCT 57.134 32.000 20.17 8.47 39.03 3.01
5027 10281 7.484035 TGTAGCTTTCTTTGAAAGAGTTCTC 57.516 36.000 20.17 5.09 39.03 2.87
5028 10282 7.275920 TGTAGCTTTCTTTGAAAGAGTTCTCT 58.724 34.615 20.17 10.78 39.03 3.10
5029 10283 7.770897 TGTAGCTTTCTTTGAAAGAGTTCTCTT 59.229 33.333 20.17 9.00 39.03 2.85
5030 10284 7.258022 AGCTTTCTTTGAAAGAGTTCTCTTC 57.742 36.000 20.17 9.30 39.03 2.87
5031 10285 6.018343 AGCTTTCTTTGAAAGAGTTCTCTTCG 60.018 38.462 20.17 3.59 39.03 3.79
5032 10286 5.659048 TTCTTTGAAAGAGTTCTCTTCGC 57.341 39.130 14.28 10.59 39.03 4.70
5033 10287 3.736252 TCTTTGAAAGAGTTCTCTTCGCG 59.264 43.478 14.28 0.00 34.60 5.87
5034 10288 3.364889 TTGAAAGAGTTCTCTTCGCGA 57.635 42.857 3.71 3.71 34.60 5.87
5035 10289 3.364889 TGAAAGAGTTCTCTTCGCGAA 57.635 42.857 22.01 22.01 34.60 4.70
5036 10290 3.309388 TGAAAGAGTTCTCTTCGCGAAG 58.691 45.455 36.96 36.96 39.71 3.79
5037 10291 3.004419 TGAAAGAGTTCTCTTCGCGAAGA 59.996 43.478 40.12 40.12 44.47 2.87
5038 10292 3.644884 AAGAGTTCTCTTCGCGAAGAA 57.355 42.857 41.10 30.76 45.75 2.52
5039 10293 2.936316 AGAGTTCTCTTCGCGAAGAAC 58.064 47.619 41.10 36.27 45.75 3.01
5040 10294 1.987074 GAGTTCTCTTCGCGAAGAACC 59.013 52.381 41.10 31.72 45.75 3.62
5041 10295 0.708918 GTTCTCTTCGCGAAGAACCG 59.291 55.000 41.10 32.04 45.75 4.44
5042 10296 0.388134 TTCTCTTCGCGAAGAACCGG 60.388 55.000 41.10 31.74 45.75 5.28
5043 10297 1.080705 CTCTTCGCGAAGAACCGGT 60.081 57.895 41.10 0.00 45.75 5.28
5044 10298 1.344942 CTCTTCGCGAAGAACCGGTG 61.345 60.000 41.10 28.66 45.75 4.94
5045 10299 1.372499 CTTCGCGAAGAACCGGTGA 60.372 57.895 39.00 6.31 40.79 4.02
5046 10300 0.942410 CTTCGCGAAGAACCGGTGAA 60.942 55.000 39.00 4.25 40.79 3.18
5047 10301 0.530211 TTCGCGAAGAACCGGTGAAA 60.530 50.000 19.38 0.00 33.14 2.69
5048 10302 0.320073 TCGCGAAGAACCGGTGAAAT 60.320 50.000 8.52 0.00 0.00 2.17
5049 10303 1.067706 TCGCGAAGAACCGGTGAAATA 60.068 47.619 8.52 0.00 0.00 1.40
5050 10304 1.931172 CGCGAAGAACCGGTGAAATAT 59.069 47.619 8.52 0.00 0.00 1.28
5051 10305 2.285602 CGCGAAGAACCGGTGAAATATG 60.286 50.000 8.52 0.00 0.00 1.78
5052 10306 2.676342 GCGAAGAACCGGTGAAATATGT 59.324 45.455 8.52 0.00 0.00 2.29
5053 10307 3.485216 GCGAAGAACCGGTGAAATATGTG 60.485 47.826 8.52 0.00 0.00 3.21
5054 10308 3.930229 CGAAGAACCGGTGAAATATGTGA 59.070 43.478 8.52 0.00 0.00 3.58
5055 10309 4.201685 CGAAGAACCGGTGAAATATGTGAC 60.202 45.833 8.52 0.00 0.00 3.67
5056 10310 3.606687 AGAACCGGTGAAATATGTGACC 58.393 45.455 8.52 0.00 0.00 4.02
5057 10311 3.008594 AGAACCGGTGAAATATGTGACCA 59.991 43.478 8.52 0.00 0.00 4.02
5058 10312 3.426787 ACCGGTGAAATATGTGACCAA 57.573 42.857 6.12 0.00 0.00 3.67
5059 10313 3.343617 ACCGGTGAAATATGTGACCAAG 58.656 45.455 6.12 0.00 0.00 3.61
5060 10314 3.008594 ACCGGTGAAATATGTGACCAAGA 59.991 43.478 6.12 0.00 0.00 3.02
5061 10315 4.199310 CCGGTGAAATATGTGACCAAGAT 58.801 43.478 2.19 0.00 0.00 2.40
5062 10316 4.035558 CCGGTGAAATATGTGACCAAGATG 59.964 45.833 2.19 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 130 2.093553 TGTTCTGCTGCAAAGGCTTTTT 60.094 40.909 10.36 0.00 41.91 1.94
129 131 1.481772 TGTTCTGCTGCAAAGGCTTTT 59.518 42.857 10.36 0.00 41.91 2.27
130 132 1.113788 TGTTCTGCTGCAAAGGCTTT 58.886 45.000 6.68 6.68 41.91 3.51
131 133 0.386838 GTGTTCTGCTGCAAAGGCTT 59.613 50.000 3.02 0.00 41.91 4.35
227 229 1.134699 GGAACAGCAGGATGATCGTGA 60.135 52.381 18.29 0.00 39.69 4.35
228 230 1.293924 GGAACAGCAGGATGATCGTG 58.706 55.000 10.55 10.55 39.69 4.35
278 281 1.293498 GCAAGCCAAGTCCTCTCGA 59.707 57.895 0.00 0.00 0.00 4.04
402 419 2.034053 CGAGCAACAAGGGTTTGCTTAA 59.966 45.455 10.70 0.00 39.66 1.85
414 432 1.063412 CGACGTCGATCGAGCAACAA 61.063 55.000 33.35 0.00 45.13 2.83
415 433 1.511254 CGACGTCGATCGAGCAACA 60.511 57.895 33.35 0.00 45.13 3.33
416 434 2.836306 GCGACGTCGATCGAGCAAC 61.836 63.158 39.74 15.89 45.13 4.17
447 473 3.617735 TGGGTAAGGCACGCACGA 61.618 61.111 0.00 0.00 44.48 4.35
461 487 1.449601 ATTGCGACGCCTTAGTGGG 60.450 57.895 18.69 0.00 36.00 4.61
489 515 1.338337 ACGTATGTGGCAGCTAGCTAG 59.662 52.381 18.86 16.84 44.79 3.42
556 590 4.024556 GCATGTACGTACGTATACTCCACT 60.025 45.833 29.05 9.36 32.82 4.00
596 687 3.441496 TCACCCGAACCGAACATATAC 57.559 47.619 0.00 0.00 0.00 1.47
597 688 3.700539 TCTTCACCCGAACCGAACATATA 59.299 43.478 0.00 0.00 0.00 0.86
600 691 0.682852 TCTTCACCCGAACCGAACAT 59.317 50.000 0.00 0.00 0.00 2.71
601 692 0.464870 TTCTTCACCCGAACCGAACA 59.535 50.000 0.00 0.00 0.00 3.18
657 751 2.255252 GAAGCCGTTGCGTTGCAT 59.745 55.556 0.00 0.00 44.33 3.96
692 791 1.069513 CGTGACTCCCAACCAACAGTA 59.930 52.381 0.00 0.00 0.00 2.74
693 792 0.179056 CGTGACTCCCAACCAACAGT 60.179 55.000 0.00 0.00 0.00 3.55
748 854 0.745468 ACTAGGAACGGATCGAAGCC 59.255 55.000 0.00 0.00 0.00 4.35
792 912 3.679917 CGGGGCTGAATATATGAAGCGAT 60.680 47.826 11.72 0.00 36.50 4.58
838 970 3.380637 CAGAGATGCCTGAAAATCCTTGG 59.619 47.826 0.00 0.00 36.29 3.61
839 971 4.096081 GTCAGAGATGCCTGAAAATCCTTG 59.904 45.833 0.00 0.00 43.94 3.61
848 980 0.689080 GGAGGGTCAGAGATGCCTGA 60.689 60.000 0.00 0.00 40.57 3.86
849 981 1.694133 GGGAGGGTCAGAGATGCCTG 61.694 65.000 0.00 0.00 35.55 4.85
852 984 1.828768 CTGGGAGGGTCAGAGATGC 59.171 63.158 0.00 0.00 34.36 3.91
853 985 0.690411 AGCTGGGAGGGTCAGAGATG 60.690 60.000 0.00 0.00 34.36 2.90
855 987 1.305633 CAGCTGGGAGGGTCAGAGA 60.306 63.158 5.57 0.00 34.36 3.10
912 1051 3.838271 GAGGCCGGCGATCAGTCA 61.838 66.667 22.54 0.00 0.00 3.41
950 1089 5.707298 TGATGAAACAAGAAGGATGGAAGAC 59.293 40.000 0.00 0.00 0.00 3.01
953 1092 4.766891 GGTGATGAAACAAGAAGGATGGAA 59.233 41.667 0.00 0.00 0.00 3.53
957 1096 4.664688 AGGGTGATGAAACAAGAAGGAT 57.335 40.909 0.00 0.00 0.00 3.24
961 1100 4.065088 CGAGAAGGGTGATGAAACAAGAA 58.935 43.478 0.00 0.00 0.00 2.52
966 1105 1.087501 GGCGAGAAGGGTGATGAAAC 58.912 55.000 0.00 0.00 0.00 2.78
967 1106 0.984230 AGGCGAGAAGGGTGATGAAA 59.016 50.000 0.00 0.00 0.00 2.69
970 1112 1.153289 CCAGGCGAGAAGGGTGATG 60.153 63.158 0.00 0.00 0.00 3.07
971 1113 1.201429 AACCAGGCGAGAAGGGTGAT 61.201 55.000 0.00 0.00 33.00 3.06
992 1134 1.097547 GGTGCACTCCATCCGATTGG 61.098 60.000 17.98 0.00 38.18 3.16
994 1136 1.153369 CGGTGCACTCCATCCGATT 60.153 57.895 17.98 0.00 39.13 3.34
996 1138 2.678580 TCGGTGCACTCCATCCGA 60.679 61.111 17.98 13.40 41.49 4.55
997 1139 2.509336 GTCGGTGCACTCCATCCG 60.509 66.667 17.98 10.99 38.57 4.18
998 1140 0.811616 GATGTCGGTGCACTCCATCC 60.812 60.000 17.98 0.00 0.00 3.51
1009 1166 1.226974 CGGCGATCAAGATGTCGGT 60.227 57.895 0.00 0.00 38.24 4.69
1377 1578 3.588906 ACGTCGTCGCTGTCACCA 61.589 61.111 0.99 0.00 41.18 4.17
1400 1601 3.744719 CGAACGACTCCCTGCGGA 61.745 66.667 0.00 0.00 36.45 5.54
1421 1622 2.090524 GGCTTCGGGTACGTGTTCG 61.091 63.158 0.00 0.00 41.85 3.95
1467 1668 3.390521 TCCTTGAGCGCGTCCCAT 61.391 61.111 8.43 0.00 0.00 4.00
1569 1782 3.119955 CGAGAAAGATACTGACACCGTCA 60.120 47.826 0.00 0.00 40.50 4.35
1645 1863 0.179000 CTGGCCAGCTTATCGAACCT 59.821 55.000 22.33 0.00 0.00 3.50
1671 1889 3.355816 GGTGACGGCGATGTTATCA 57.644 52.632 16.62 1.90 0.00 2.15
2598 2827 1.372997 GCTCCTCTTCAACGCGTCA 60.373 57.895 14.44 0.00 0.00 4.35
4044 4776 0.758734 ATCATGAGGATTTCCGGCGA 59.241 50.000 9.30 0.00 42.08 5.54
4162 4909 7.171508 TCGCCTAAGCTATGTGAAATATGAAAG 59.828 37.037 0.00 0.00 36.60 2.62
4389 9615 1.133025 ACAGCCGAATTGTGCTTATGC 59.867 47.619 0.00 0.00 35.12 3.14
4390 9616 2.419673 TGACAGCCGAATTGTGCTTATG 59.580 45.455 0.00 0.00 35.12 1.90
4455 9683 2.951229 ACACACCTAAAAGGGACCAG 57.049 50.000 0.00 0.00 40.58 4.00
4462 9690 7.819900 AGTTTCAGAGCTATACACACCTAAAAG 59.180 37.037 0.00 0.00 0.00 2.27
4504 9735 9.941664 CATTAGTCTCGAAGAAATATGCAAAAT 57.058 29.630 0.00 0.00 34.09 1.82
4521 9758 9.638239 CCTATCAGATCTTAAAGCATTAGTCTC 57.362 37.037 0.00 0.00 0.00 3.36
4525 9762 9.566432 AAACCCTATCAGATCTTAAAGCATTAG 57.434 33.333 0.00 0.00 0.00 1.73
4545 9783 1.134431 CACAAGCAAAGGCAAAACCCT 60.134 47.619 0.00 0.00 44.61 4.34
4625 9873 2.408880 GATGGGAGGGAGCTGATGCC 62.409 65.000 0.00 0.00 40.80 4.40
4633 9881 1.059006 CCAGGGAAGATGGGAGGGAG 61.059 65.000 0.00 0.00 33.94 4.30
4659 9907 2.107366 TGCTGGGTAATGTCGAGATGA 58.893 47.619 0.00 0.00 0.00 2.92
4665 9913 1.468520 CCAACTTGCTGGGTAATGTCG 59.531 52.381 0.00 0.00 32.32 4.35
4793 10041 2.050714 GCGACGTGACCTTCGACA 60.051 61.111 0.00 0.00 37.43 4.35
4835 10084 1.684983 GCATATGCAAGAAGCCATGGT 59.315 47.619 22.84 0.00 44.83 3.55
4884 10133 3.336138 AACTTTAAGGAGCCGAGAAGG 57.664 47.619 0.00 0.00 44.97 3.46
4887 10136 3.326880 AGGAAAACTTTAAGGAGCCGAGA 59.673 43.478 0.00 0.00 0.00 4.04
4890 10139 3.437049 CAGAGGAAAACTTTAAGGAGCCG 59.563 47.826 0.00 0.00 0.00 5.52
4892 10141 5.309638 AGACAGAGGAAAACTTTAAGGAGC 58.690 41.667 0.00 0.00 0.00 4.70
4893 10142 6.205658 CCAAGACAGAGGAAAACTTTAAGGAG 59.794 42.308 0.00 0.00 0.00 3.69
4894 10143 6.062095 CCAAGACAGAGGAAAACTTTAAGGA 58.938 40.000 0.00 0.00 0.00 3.36
4895 10144 5.241728 CCCAAGACAGAGGAAAACTTTAAGG 59.758 44.000 0.00 0.00 0.00 2.69
4896 10145 5.828328 ACCCAAGACAGAGGAAAACTTTAAG 59.172 40.000 0.00 0.00 0.00 1.85
4897 10146 5.762279 ACCCAAGACAGAGGAAAACTTTAA 58.238 37.500 0.00 0.00 0.00 1.52
4898 10147 5.382664 ACCCAAGACAGAGGAAAACTTTA 57.617 39.130 0.00 0.00 0.00 1.85
4899 10148 4.251103 ACCCAAGACAGAGGAAAACTTT 57.749 40.909 0.00 0.00 0.00 2.66
4900 10149 3.953542 ACCCAAGACAGAGGAAAACTT 57.046 42.857 0.00 0.00 0.00 2.66
4901 10150 3.953542 AACCCAAGACAGAGGAAAACT 57.046 42.857 0.00 0.00 0.00 2.66
4902 10151 4.207955 AGAAACCCAAGACAGAGGAAAAC 58.792 43.478 0.00 0.00 0.00 2.43
4903 10152 4.519906 AGAAACCCAAGACAGAGGAAAA 57.480 40.909 0.00 0.00 0.00 2.29
4916 10166 2.818921 AGCCATATTGCAAGAAACCCA 58.181 42.857 4.94 0.00 0.00 4.51
4919 10169 5.653507 TGATCAAGCCATATTGCAAGAAAC 58.346 37.500 4.94 0.00 0.00 2.78
4924 10174 5.855740 TGAATGATCAAGCCATATTGCAA 57.144 34.783 0.00 0.00 30.99 4.08
4934 10184 7.283127 TCCTACTGGTAAATTGAATGATCAAGC 59.717 37.037 0.00 0.00 40.56 4.01
4948 10202 5.088730 TCCTTAACTGCTCCTACTGGTAAA 58.911 41.667 0.00 0.00 34.23 2.01
4952 10206 3.515901 ACTTCCTTAACTGCTCCTACTGG 59.484 47.826 0.00 0.00 0.00 4.00
4953 10207 4.220821 TCACTTCCTTAACTGCTCCTACTG 59.779 45.833 0.00 0.00 0.00 2.74
4954 10208 4.417437 TCACTTCCTTAACTGCTCCTACT 58.583 43.478 0.00 0.00 0.00 2.57
4955 10209 4.803098 TCACTTCCTTAACTGCTCCTAC 57.197 45.455 0.00 0.00 0.00 3.18
4956 10210 4.777896 ACATCACTTCCTTAACTGCTCCTA 59.222 41.667 0.00 0.00 0.00 2.94
4957 10211 3.584848 ACATCACTTCCTTAACTGCTCCT 59.415 43.478 0.00 0.00 0.00 3.69
4958 10212 3.944087 ACATCACTTCCTTAACTGCTCC 58.056 45.455 0.00 0.00 0.00 4.70
4959 10213 5.703130 AGAAACATCACTTCCTTAACTGCTC 59.297 40.000 0.00 0.00 0.00 4.26
4960 10214 5.471456 CAGAAACATCACTTCCTTAACTGCT 59.529 40.000 0.00 0.00 0.00 4.24
4961 10215 5.239525 ACAGAAACATCACTTCCTTAACTGC 59.760 40.000 0.00 0.00 0.00 4.40
4962 10216 6.867662 ACAGAAACATCACTTCCTTAACTG 57.132 37.500 0.00 0.00 0.00 3.16
4963 10217 7.054124 TCAACAGAAACATCACTTCCTTAACT 58.946 34.615 0.00 0.00 0.00 2.24
4964 10218 7.259290 TCAACAGAAACATCACTTCCTTAAC 57.741 36.000 0.00 0.00 0.00 2.01
4965 10219 7.556275 ACTTCAACAGAAACATCACTTCCTTAA 59.444 33.333 0.00 0.00 0.00 1.85
4966 10220 7.054124 ACTTCAACAGAAACATCACTTCCTTA 58.946 34.615 0.00 0.00 0.00 2.69
4967 10221 5.888161 ACTTCAACAGAAACATCACTTCCTT 59.112 36.000 0.00 0.00 0.00 3.36
4968 10222 5.440610 ACTTCAACAGAAACATCACTTCCT 58.559 37.500 0.00 0.00 0.00 3.36
4969 10223 5.529060 AGACTTCAACAGAAACATCACTTCC 59.471 40.000 0.00 0.00 0.00 3.46
4970 10224 6.610741 AGACTTCAACAGAAACATCACTTC 57.389 37.500 0.00 0.00 0.00 3.01
4971 10225 8.682936 ATTAGACTTCAACAGAAACATCACTT 57.317 30.769 0.00 0.00 0.00 3.16
4972 10226 8.682936 AATTAGACTTCAACAGAAACATCACT 57.317 30.769 0.00 0.00 0.00 3.41
4973 10227 9.736023 AAAATTAGACTTCAACAGAAACATCAC 57.264 29.630 0.00 0.00 0.00 3.06
4999 10253 9.353999 GAACTCTTTCAAAGAAAGCTACAAAAA 57.646 29.630 13.23 0.00 37.02 1.94
5000 10254 8.739972 AGAACTCTTTCAAAGAAAGCTACAAAA 58.260 29.630 13.23 0.00 37.02 2.44
5001 10255 8.281212 AGAACTCTTTCAAAGAAAGCTACAAA 57.719 30.769 13.23 0.00 37.02 2.83
5002 10256 7.770897 AGAGAACTCTTTCAAAGAAAGCTACAA 59.229 33.333 13.23 0.00 36.31 2.41
5003 10257 7.275920 AGAGAACTCTTTCAAAGAAAGCTACA 58.724 34.615 13.23 0.00 36.31 2.74
5004 10258 7.722795 AGAGAACTCTTTCAAAGAAAGCTAC 57.277 36.000 13.23 6.29 36.31 3.58
5019 10273 2.351932 GGTTCTTCGCGAAGAGAACTCT 60.352 50.000 40.19 0.00 46.80 3.24
5020 10274 1.987074 GGTTCTTCGCGAAGAGAACTC 59.013 52.381 40.19 27.71 46.80 3.01
5021 10275 1.666311 CGGTTCTTCGCGAAGAGAACT 60.666 52.381 40.19 0.00 46.80 3.01
5022 10276 0.708918 CGGTTCTTCGCGAAGAGAAC 59.291 55.000 40.19 35.61 46.80 3.01
5023 10277 0.388134 CCGGTTCTTCGCGAAGAGAA 60.388 55.000 40.19 29.32 46.80 2.87
5024 10278 1.211969 CCGGTTCTTCGCGAAGAGA 59.788 57.895 40.19 30.33 46.80 3.10
5025 10279 1.080705 ACCGGTTCTTCGCGAAGAG 60.081 57.895 40.19 32.53 46.80 2.85
5026 10280 1.372499 CACCGGTTCTTCGCGAAGA 60.372 57.895 39.93 39.93 44.94 2.87
5027 10281 0.942410 TTCACCGGTTCTTCGCGAAG 60.942 55.000 36.96 36.96 39.71 3.79
5028 10282 0.530211 TTTCACCGGTTCTTCGCGAA 60.530 50.000 22.01 22.01 0.00 4.70
5029 10283 0.320073 ATTTCACCGGTTCTTCGCGA 60.320 50.000 2.97 3.71 0.00 5.87
5030 10284 1.352114 TATTTCACCGGTTCTTCGCG 58.648 50.000 2.97 0.00 0.00 5.87
5031 10285 2.676342 ACATATTTCACCGGTTCTTCGC 59.324 45.455 2.97 0.00 0.00 4.70
5032 10286 3.930229 TCACATATTTCACCGGTTCTTCG 59.070 43.478 2.97 0.00 0.00 3.79
5033 10287 4.094442 GGTCACATATTTCACCGGTTCTTC 59.906 45.833 2.97 0.00 0.00 2.87
5034 10288 4.007659 GGTCACATATTTCACCGGTTCTT 58.992 43.478 2.97 0.00 0.00 2.52
5035 10289 3.008594 TGGTCACATATTTCACCGGTTCT 59.991 43.478 2.97 0.00 0.00 3.01
5036 10290 3.340034 TGGTCACATATTTCACCGGTTC 58.660 45.455 2.97 0.00 0.00 3.62
5037 10291 3.426787 TGGTCACATATTTCACCGGTT 57.573 42.857 2.97 0.00 0.00 4.44
5038 10292 3.008594 TCTTGGTCACATATTTCACCGGT 59.991 43.478 0.00 0.00 0.00 5.28
5039 10293 3.605634 TCTTGGTCACATATTTCACCGG 58.394 45.455 0.00 0.00 0.00 5.28
5040 10294 5.160699 CATCTTGGTCACATATTTCACCG 57.839 43.478 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.