Multiple sequence alignment - TraesCS1D01G334100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G334100 chr1D 100.000 2450 0 0 1 2450 423881945 423884394 0.000000e+00 4525.0
1 TraesCS1D01G334100 chr1D 89.502 562 54 1 873 1434 423644296 423644852 0.000000e+00 706.0
2 TraesCS1D01G334100 chr1D 79.946 738 96 22 1737 2439 34533961 34534681 1.690000e-136 496.0
3 TraesCS1D01G334100 chr1D 93.160 307 15 3 38 338 423643698 423644004 1.730000e-121 446.0
4 TraesCS1D01G334100 chr1B 90.859 1094 84 15 381 1467 573568797 573569881 0.000000e+00 1452.0
5 TraesCS1D01G334100 chr1B 95.847 313 13 0 7 319 573568471 573568783 7.820000e-140 507.0
6 TraesCS1D01G334100 chr7D 97.055 713 21 0 1738 2450 31370264 31370976 0.000000e+00 1201.0
7 TraesCS1D01G334100 chr5D 96.792 717 22 1 1734 2450 370300166 370300881 0.000000e+00 1195.0
8 TraesCS1D01G334100 chr5D 97.727 44 0 1 757 799 369298338 369298381 9.400000e-10 75.0
9 TraesCS1D01G334100 chr3D 96.788 716 18 1 1740 2450 19364386 19365101 0.000000e+00 1190.0
10 TraesCS1D01G334100 chr3D 83.303 551 90 2 865 1414 573871350 573870801 7.820000e-140 507.0
11 TraesCS1D01G334100 chr3D 81.851 551 98 2 865 1414 573966975 573967524 1.720000e-126 462.0
12 TraesCS1D01G334100 chr3D 89.520 229 24 0 71 299 573872478 573872250 8.570000e-75 291.0
13 TraesCS1D01G334100 chr3D 95.652 46 1 1 760 804 431631846 431631801 3.380000e-09 73.1
14 TraesCS1D01G334100 chr3D 86.364 66 4 4 752 812 508581093 508581158 1.570000e-07 67.6
15 TraesCS1D01G334100 chr2B 95.792 713 30 0 1738 2450 741470394 741469682 0.000000e+00 1151.0
16 TraesCS1D01G334100 chr2B 80.471 722 84 18 1754 2450 635078699 635078010 1.310000e-137 499.0
17 TraesCS1D01G334100 chr2B 97.727 44 0 1 760 802 785206631 785206588 9.400000e-10 75.0
18 TraesCS1D01G334100 chr1A 94.502 582 32 0 842 1423 520401728 520402309 0.000000e+00 898.0
19 TraesCS1D01G334100 chr1A 92.084 619 44 2 823 1436 520394227 520394845 0.000000e+00 867.0
20 TraesCS1D01G334100 chr1A 90.747 562 52 0 873 1434 519819561 519820122 0.000000e+00 750.0
21 TraesCS1D01G334100 chr1A 87.414 580 71 2 873 1451 520351195 520350617 0.000000e+00 665.0
22 TraesCS1D01G334100 chr1A 95.614 342 12 2 7 348 520401007 520401345 1.660000e-151 545.0
23 TraesCS1D01G334100 chr1A 93.051 331 22 1 370 700 520401330 520401659 1.320000e-132 483.0
24 TraesCS1D01G334100 chr1A 98.120 266 5 0 74 339 519818987 519819252 4.770000e-127 464.0
25 TraesCS1D01G334100 chr1A 94.755 286 12 2 34 316 520393563 520393848 2.240000e-120 442.0
26 TraesCS1D01G334100 chr1A 93.467 199 13 0 110 308 520355220 520355022 1.840000e-76 296.0
27 TraesCS1D01G334100 chr6B 79.866 745 81 37 1738 2450 678065133 678064426 4.740000e-132 481.0
28 TraesCS1D01G334100 chr6B 79.704 744 84 29 1738 2450 677888390 677887683 2.200000e-130 475.0
29 TraesCS1D01G334100 chr6B 79.802 708 77 28 1774 2450 677763726 677763054 2.870000e-124 455.0
30 TraesCS1D01G334100 chrUn 86.468 436 47 9 1738 2170 366430203 366429777 3.690000e-128 468.0
31 TraesCS1D01G334100 chrUn 83.333 300 39 9 1739 2037 369431736 369432025 1.440000e-67 267.0
32 TraesCS1D01G334100 chrUn 83.333 300 39 9 1739 2037 369832285 369831996 1.440000e-67 267.0
33 TraesCS1D01G334100 chr7B 85.682 440 49 10 1733 2170 709504111 709504538 3.720000e-123 451.0
34 TraesCS1D01G334100 chr6D 83.648 477 65 9 1735 2208 380190175 380190641 1.040000e-118 436.0
35 TraesCS1D01G334100 chr3B 80.680 559 108 0 865 1423 763220430 763219872 3.740000e-118 435.0
36 TraesCS1D01G334100 chr3B 89.083 229 25 0 71 299 763260429 763260657 3.990000e-73 285.0
37 TraesCS1D01G334100 chr4B 84.138 435 54 11 1738 2170 527963165 527962744 8.160000e-110 407.0
38 TraesCS1D01G334100 chr4B 97.727 44 1 0 757 800 104816375 104816332 2.610000e-10 76.8
39 TraesCS1D01G334100 chr2D 84.437 302 36 8 1737 2037 44227877 44227586 1.110000e-73 287.0
40 TraesCS1D01G334100 chr2D 83.667 300 38 9 1739 2037 44253756 44253467 3.100000e-69 272.0
41 TraesCS1D01G334100 chr3A 88.646 229 26 0 71 299 708933588 708933360 1.860000e-71 279.0
42 TraesCS1D01G334100 chr5B 94.118 51 2 1 757 806 661858734 661858784 2.610000e-10 76.8
43 TraesCS1D01G334100 chr5B 95.652 46 1 1 756 800 441532713 441532668 3.380000e-09 73.1
44 TraesCS1D01G334100 chr4D 97.674 43 1 0 760 802 49788468 49788426 9.400000e-10 75.0
45 TraesCS1D01G334100 chr4A 93.750 48 2 1 757 803 657204876 657204923 1.220000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G334100 chr1D 423881945 423884394 2449 False 4525.0 4525 100.0000 1 2450 1 chr1D.!!$F2 2449
1 TraesCS1D01G334100 chr1D 423643698 423644852 1154 False 576.0 706 91.3310 38 1434 2 chr1D.!!$F3 1396
2 TraesCS1D01G334100 chr1D 34533961 34534681 720 False 496.0 496 79.9460 1737 2439 1 chr1D.!!$F1 702
3 TraesCS1D01G334100 chr1B 573568471 573569881 1410 False 979.5 1452 93.3530 7 1467 2 chr1B.!!$F1 1460
4 TraesCS1D01G334100 chr7D 31370264 31370976 712 False 1201.0 1201 97.0550 1738 2450 1 chr7D.!!$F1 712
5 TraesCS1D01G334100 chr5D 370300166 370300881 715 False 1195.0 1195 96.7920 1734 2450 1 chr5D.!!$F2 716
6 TraesCS1D01G334100 chr3D 19364386 19365101 715 False 1190.0 1190 96.7880 1740 2450 1 chr3D.!!$F1 710
7 TraesCS1D01G334100 chr3D 573966975 573967524 549 False 462.0 462 81.8510 865 1414 1 chr3D.!!$F3 549
8 TraesCS1D01G334100 chr3D 573870801 573872478 1677 True 399.0 507 86.4115 71 1414 2 chr3D.!!$R2 1343
9 TraesCS1D01G334100 chr2B 741469682 741470394 712 True 1151.0 1151 95.7920 1738 2450 1 chr2B.!!$R2 712
10 TraesCS1D01G334100 chr2B 635078010 635078699 689 True 499.0 499 80.4710 1754 2450 1 chr2B.!!$R1 696
11 TraesCS1D01G334100 chr1A 520393563 520394845 1282 False 654.5 867 93.4195 34 1436 2 chr1A.!!$F2 1402
12 TraesCS1D01G334100 chr1A 520401007 520402309 1302 False 642.0 898 94.3890 7 1423 3 chr1A.!!$F3 1416
13 TraesCS1D01G334100 chr1A 519818987 519820122 1135 False 607.0 750 94.4335 74 1434 2 chr1A.!!$F1 1360
14 TraesCS1D01G334100 chr1A 520350617 520355220 4603 True 480.5 665 90.4405 110 1451 2 chr1A.!!$R1 1341
15 TraesCS1D01G334100 chr6B 678064426 678065133 707 True 481.0 481 79.8660 1738 2450 1 chr6B.!!$R3 712
16 TraesCS1D01G334100 chr6B 677887683 677888390 707 True 475.0 475 79.7040 1738 2450 1 chr6B.!!$R2 712
17 TraesCS1D01G334100 chr6B 677763054 677763726 672 True 455.0 455 79.8020 1774 2450 1 chr6B.!!$R1 676
18 TraesCS1D01G334100 chr3B 763219872 763220430 558 True 435.0 435 80.6800 865 1423 1 chr3B.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 373 0.249657 GTGTGCATTCCCCGCAAAAA 60.25 50.0 0.0 0.0 41.97 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 5346 0.0293 ACACGCACAGCAACACAATC 59.971 50.0 0.0 0.0 0.0 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
342 357 9.584008 TTTCTTCGTATATATAGAGGGAAGTGT 57.416 33.333 13.60 0.00 33.14 3.55
347 362 7.396339 TCGTATATATAGAGGGAAGTGTGCATT 59.604 37.037 0.00 0.00 0.00 3.56
349 364 3.567478 ATAGAGGGAAGTGTGCATTCC 57.433 47.619 8.78 8.78 44.65 3.01
352 367 3.590824 GGAAGTGTGCATTCCCCG 58.409 61.111 6.32 0.00 40.37 5.73
353 368 2.700773 GGAAGTGTGCATTCCCCGC 61.701 63.158 6.32 0.00 40.37 6.13
354 369 1.971167 GAAGTGTGCATTCCCCGCA 60.971 57.895 0.00 0.00 36.94 5.69
355 370 1.523154 GAAGTGTGCATTCCCCGCAA 61.523 55.000 0.00 0.00 41.97 4.85
357 372 1.112315 AGTGTGCATTCCCCGCAAAA 61.112 50.000 0.00 0.00 41.97 2.44
358 373 0.249657 GTGTGCATTCCCCGCAAAAA 60.250 50.000 0.00 0.00 41.97 1.94
471 4045 6.046593 ACTTGACGAATCAGTTGTACAAGAA 58.953 36.000 8.98 0.00 37.49 2.52
640 4217 1.347817 GACGCAGGAGAACGAGCAAG 61.348 60.000 0.00 0.00 0.00 4.01
692 4366 7.227910 TCCGCCAACATTTAGGTATTTCTAATC 59.772 37.037 0.00 0.00 0.00 1.75
727 4402 0.465097 TACTCCCTCGTAGGAAGGCG 60.465 60.000 2.84 0.00 37.67 5.52
730 4405 0.749454 TCCCTCGTAGGAAGGCGTAC 60.749 60.000 2.84 0.00 37.67 3.67
735 4410 2.017049 TCGTAGGAAGGCGTACTAACC 58.983 52.381 0.00 0.00 34.16 2.85
750 4425 5.577164 CGTACTAACCTTCATCCAAAGTCAG 59.423 44.000 0.00 0.00 0.00 3.51
752 4427 6.187727 ACTAACCTTCATCCAAAGTCAGAA 57.812 37.500 0.00 0.00 0.00 3.02
753 4428 5.998363 ACTAACCTTCATCCAAAGTCAGAAC 59.002 40.000 0.00 0.00 0.00 3.01
754 4429 4.437682 ACCTTCATCCAAAGTCAGAACA 57.562 40.909 0.00 0.00 0.00 3.18
755 4430 4.392940 ACCTTCATCCAAAGTCAGAACAG 58.607 43.478 0.00 0.00 0.00 3.16
756 4431 3.190118 CCTTCATCCAAAGTCAGAACAGC 59.810 47.826 0.00 0.00 0.00 4.40
757 4432 3.490439 TCATCCAAAGTCAGAACAGCA 57.510 42.857 0.00 0.00 0.00 4.41
758 4433 4.025040 TCATCCAAAGTCAGAACAGCAT 57.975 40.909 0.00 0.00 0.00 3.79
760 4435 5.559770 TCATCCAAAGTCAGAACAGCATTA 58.440 37.500 0.00 0.00 0.00 1.90
761 4436 5.645067 TCATCCAAAGTCAGAACAGCATTAG 59.355 40.000 0.00 0.00 0.00 1.73
763 4438 4.756642 TCCAAAGTCAGAACAGCATTAGTG 59.243 41.667 0.00 0.00 0.00 2.74
765 4440 5.334414 CCAAAGTCAGAACAGCATTAGTGTC 60.334 44.000 0.00 0.00 0.00 3.67
767 4442 4.960938 AGTCAGAACAGCATTAGTGTCAA 58.039 39.130 0.00 0.00 0.00 3.18
768 4443 5.368145 AGTCAGAACAGCATTAGTGTCAAA 58.632 37.500 0.00 0.00 0.00 2.69
769 4444 5.822519 AGTCAGAACAGCATTAGTGTCAAAA 59.177 36.000 0.00 0.00 0.00 2.44
770 4445 6.318648 AGTCAGAACAGCATTAGTGTCAAAAA 59.681 34.615 0.00 0.00 0.00 1.94
771 4446 6.634436 GTCAGAACAGCATTAGTGTCAAAAAG 59.366 38.462 0.00 0.00 0.00 2.27
772 4447 5.400485 CAGAACAGCATTAGTGTCAAAAAGC 59.600 40.000 0.00 0.00 0.00 3.51
775 4450 4.823989 ACAGCATTAGTGTCAAAAAGCTCT 59.176 37.500 0.00 0.00 0.00 4.09
776 4451 5.300286 ACAGCATTAGTGTCAAAAAGCTCTT 59.700 36.000 0.00 0.00 0.00 2.85
778 4453 7.175641 ACAGCATTAGTGTCAAAAAGCTCTTAT 59.824 33.333 0.00 0.00 0.00 1.73
790 4465 9.261180 TCAAAAAGCTCTTATATTATGAGACGG 57.739 33.333 0.00 0.00 33.20 4.79
791 4466 9.261180 CAAAAAGCTCTTATATTATGAGACGGA 57.739 33.333 0.00 0.00 33.20 4.69
792 4467 9.482627 AAAAAGCTCTTATATTATGAGACGGAG 57.517 33.333 0.00 0.00 33.20 4.63
793 4468 6.767524 AGCTCTTATATTATGAGACGGAGG 57.232 41.667 0.00 0.00 33.20 4.30
794 4469 5.654650 AGCTCTTATATTATGAGACGGAGGG 59.345 44.000 0.00 0.00 33.20 4.30
795 4470 5.652891 GCTCTTATATTATGAGACGGAGGGA 59.347 44.000 0.00 0.00 33.20 4.20
796 4471 6.183360 GCTCTTATATTATGAGACGGAGGGAG 60.183 46.154 0.00 0.00 33.20 4.30
797 4472 6.791371 TCTTATATTATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
798 4473 7.925622 TCTTATATTATGAGACGGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
799 4474 8.047911 TCTTATATTATGAGACGGAGGGAGTAG 58.952 40.741 0.00 0.00 0.00 2.57
800 4475 3.947612 TTATGAGACGGAGGGAGTAGT 57.052 47.619 0.00 0.00 0.00 2.73
801 4476 5.579753 ATTATGAGACGGAGGGAGTAGTA 57.420 43.478 0.00 0.00 0.00 1.82
802 4477 3.947612 ATGAGACGGAGGGAGTAGTAA 57.052 47.619 0.00 0.00 0.00 2.24
803 4478 3.726557 TGAGACGGAGGGAGTAGTAAA 57.273 47.619 0.00 0.00 0.00 2.01
850 4538 6.334102 ACTCTGTTTACTTCGTCTCATTCT 57.666 37.500 0.00 0.00 0.00 2.40
852 4540 6.207810 ACTCTGTTTACTTCGTCTCATTCTCT 59.792 38.462 0.00 0.00 0.00 3.10
862 4550 8.035394 ACTTCGTCTCATTCTCTTGCTTATAAA 58.965 33.333 0.00 0.00 0.00 1.40
943 4632 2.351244 TTCATGGCGAGCGACCTCT 61.351 57.895 0.00 0.00 35.90 3.69
1380 5069 0.041090 TCAAGGGGAATTTCAGGGCC 59.959 55.000 0.00 0.00 0.00 5.80
1456 5146 6.218108 ACGAGAAGGTTATCTAAATCGGTT 57.782 37.500 0.00 0.00 32.56 4.44
1467 5157 8.403236 GTTATCTAAATCGGTTTTGCTAATGGT 58.597 33.333 0.00 0.00 0.00 3.55
1468 5158 6.431198 TCTAAATCGGTTTTGCTAATGGTC 57.569 37.500 0.00 0.00 0.00 4.02
1469 5159 5.941058 TCTAAATCGGTTTTGCTAATGGTCA 59.059 36.000 0.00 0.00 0.00 4.02
1470 5160 4.701956 AATCGGTTTTGCTAATGGTCAG 57.298 40.909 0.00 0.00 0.00 3.51
1471 5161 2.432444 TCGGTTTTGCTAATGGTCAGG 58.568 47.619 0.00 0.00 0.00 3.86
1472 5162 1.135402 CGGTTTTGCTAATGGTCAGGC 60.135 52.381 0.00 0.00 0.00 4.85
1473 5163 1.892474 GGTTTTGCTAATGGTCAGGCA 59.108 47.619 0.00 0.00 0.00 4.75
1474 5164 2.352715 GGTTTTGCTAATGGTCAGGCAC 60.353 50.000 0.00 0.00 34.30 5.01
1476 5166 0.698238 TTGCTAATGGTCAGGCACCT 59.302 50.000 0.00 0.00 46.98 4.00
1477 5167 0.035152 TGCTAATGGTCAGGCACCTG 60.035 55.000 10.60 10.60 46.98 4.00
1489 5179 3.411446 CAGGCACCTGAAATTACTGTCA 58.589 45.455 11.43 0.00 46.30 3.58
1490 5180 3.820467 CAGGCACCTGAAATTACTGTCAA 59.180 43.478 11.43 0.00 46.30 3.18
1491 5181 4.460382 CAGGCACCTGAAATTACTGTCAAT 59.540 41.667 11.43 0.00 46.30 2.57
1492 5182 5.047802 CAGGCACCTGAAATTACTGTCAATT 60.048 40.000 11.43 0.00 46.30 2.32
1493 5183 5.047802 AGGCACCTGAAATTACTGTCAATTG 60.048 40.000 0.00 0.00 0.00 2.32
1494 5184 5.048083 GGCACCTGAAATTACTGTCAATTGA 60.048 40.000 3.38 3.38 0.00 2.57
1495 5185 6.350445 GGCACCTGAAATTACTGTCAATTGAT 60.350 38.462 12.12 0.00 0.00 2.57
1496 5186 7.092716 GCACCTGAAATTACTGTCAATTGATT 58.907 34.615 12.12 0.00 0.00 2.57
1497 5187 7.599998 GCACCTGAAATTACTGTCAATTGATTT 59.400 33.333 12.12 6.79 0.00 2.17
1498 5188 8.918658 CACCTGAAATTACTGTCAATTGATTTG 58.081 33.333 12.12 7.49 36.61 2.32
1499 5189 8.090214 ACCTGAAATTACTGTCAATTGATTTGG 58.910 33.333 12.12 7.83 35.92 3.28
1500 5190 7.063780 CCTGAAATTACTGTCAATTGATTTGGC 59.936 37.037 12.12 0.00 40.49 4.52
1502 5192 7.384660 TGAAATTACTGTCAATTGATTTGGCAC 59.615 33.333 12.12 0.00 44.80 5.01
1503 5193 3.665745 ACTGTCAATTGATTTGGCACC 57.334 42.857 12.12 0.00 44.80 5.01
1504 5194 2.299867 ACTGTCAATTGATTTGGCACCC 59.700 45.455 12.12 0.00 44.80 4.61
1505 5195 2.564062 CTGTCAATTGATTTGGCACCCT 59.436 45.455 12.12 0.00 44.80 4.34
1506 5196 2.971330 TGTCAATTGATTTGGCACCCTT 59.029 40.909 12.12 0.00 44.80 3.95
1507 5197 3.244146 TGTCAATTGATTTGGCACCCTTG 60.244 43.478 12.12 0.00 44.80 3.61
1508 5198 2.302445 TCAATTGATTTGGCACCCTTGG 59.698 45.455 3.38 0.00 35.92 3.61
1509 5199 1.278537 ATTGATTTGGCACCCTTGGG 58.721 50.000 3.77 3.77 0.00 4.12
1510 5200 0.105246 TTGATTTGGCACCCTTGGGT 60.105 50.000 5.34 5.34 0.00 4.51
1511 5201 0.541764 TGATTTGGCACCCTTGGGTC 60.542 55.000 8.63 4.26 0.00 4.46
1512 5202 0.251787 GATTTGGCACCCTTGGGTCT 60.252 55.000 8.63 0.00 0.00 3.85
1513 5203 0.190815 ATTTGGCACCCTTGGGTCTT 59.809 50.000 8.63 0.00 0.00 3.01
1514 5204 0.469144 TTTGGCACCCTTGGGTCTTC 60.469 55.000 8.63 2.37 0.00 2.87
1515 5205 1.360393 TTGGCACCCTTGGGTCTTCT 61.360 55.000 8.63 0.00 0.00 2.85
1516 5206 1.360393 TGGCACCCTTGGGTCTTCTT 61.360 55.000 8.63 0.00 0.00 2.52
1517 5207 0.178961 GGCACCCTTGGGTCTTCTTT 60.179 55.000 8.63 0.00 0.00 2.52
1518 5208 1.704641 GCACCCTTGGGTCTTCTTTT 58.295 50.000 8.63 0.00 0.00 2.27
1519 5209 2.039418 GCACCCTTGGGTCTTCTTTTT 58.961 47.619 8.63 0.00 0.00 1.94
1542 5232 8.644374 TTTTACAAATCAGTACAATTAGGCCT 57.356 30.769 11.78 11.78 0.00 5.19
1543 5233 9.742144 TTTTACAAATCAGTACAATTAGGCCTA 57.258 29.630 8.91 8.91 0.00 3.93
1544 5234 8.958119 TTACAAATCAGTACAATTAGGCCTAG 57.042 34.615 13.36 4.13 0.00 3.02
1545 5235 6.357367 ACAAATCAGTACAATTAGGCCTAGG 58.643 40.000 13.36 3.67 0.00 3.02
1546 5236 5.568620 AATCAGTACAATTAGGCCTAGGG 57.431 43.478 13.36 9.05 0.00 3.53
1547 5237 4.274794 TCAGTACAATTAGGCCTAGGGA 57.725 45.455 13.36 0.00 0.00 4.20
1548 5238 4.223953 TCAGTACAATTAGGCCTAGGGAG 58.776 47.826 13.36 7.26 0.00 4.30
1549 5239 3.325135 CAGTACAATTAGGCCTAGGGAGG 59.675 52.174 13.36 5.14 46.93 4.30
1566 5256 3.880846 GCCGCAGCCTCATTTCGG 61.881 66.667 0.00 0.00 42.68 4.30
1567 5257 3.204827 CCGCAGCCTCATTTCGGG 61.205 66.667 0.00 0.00 36.73 5.14
1573 5263 4.794648 CCTCATTTCGGGCCGCCA 62.795 66.667 23.83 10.60 0.00 5.69
1574 5264 3.508840 CTCATTTCGGGCCGCCAC 61.509 66.667 23.83 0.00 0.00 5.01
1575 5265 4.337177 TCATTTCGGGCCGCCACA 62.337 61.111 23.83 0.00 0.00 4.17
1576 5266 3.369400 CATTTCGGGCCGCCACAA 61.369 61.111 23.83 7.49 0.00 3.33
1577 5267 2.362375 ATTTCGGGCCGCCACAAT 60.362 55.556 23.83 13.38 0.00 2.71
1578 5268 2.709883 ATTTCGGGCCGCCACAATG 61.710 57.895 23.83 0.00 0.00 2.82
1582 5272 3.310307 GGGCCGCCACAATGGTTT 61.310 61.111 12.58 0.00 40.46 3.27
1583 5273 2.048316 GGCCGCCACAATGGTTTG 60.048 61.111 3.91 0.00 40.46 2.93
1584 5274 2.569354 GGCCGCCACAATGGTTTGA 61.569 57.895 3.91 0.00 40.46 2.69
1585 5275 1.365633 GCCGCCACAATGGTTTGAA 59.634 52.632 0.00 0.00 40.46 2.69
1586 5276 0.667184 GCCGCCACAATGGTTTGAAG 60.667 55.000 0.00 0.00 40.46 3.02
1587 5277 0.673437 CCGCCACAATGGTTTGAAGT 59.327 50.000 0.00 0.00 40.46 3.01
1588 5278 1.602668 CCGCCACAATGGTTTGAAGTG 60.603 52.381 0.00 0.00 40.46 3.16
1589 5279 1.066908 CGCCACAATGGTTTGAAGTGT 59.933 47.619 0.00 0.00 40.46 3.55
1590 5280 2.472816 GCCACAATGGTTTGAAGTGTG 58.527 47.619 0.00 0.00 40.46 3.82
1591 5281 2.472816 CCACAATGGTTTGAAGTGTGC 58.527 47.619 0.00 0.00 38.58 4.57
1592 5282 2.118683 CACAATGGTTTGAAGTGTGCG 58.881 47.619 0.00 0.00 36.64 5.34
1593 5283 1.130955 CAATGGTTTGAAGTGTGCGC 58.869 50.000 0.00 0.00 34.60 6.09
1594 5284 1.032014 AATGGTTTGAAGTGTGCGCT 58.968 45.000 9.73 0.00 0.00 5.92
1595 5285 1.032014 ATGGTTTGAAGTGTGCGCTT 58.968 45.000 9.73 0.00 0.00 4.68
1596 5286 0.100325 TGGTTTGAAGTGTGCGCTTG 59.900 50.000 9.73 0.00 0.00 4.01
1597 5287 1.208642 GGTTTGAAGTGTGCGCTTGC 61.209 55.000 9.73 0.00 39.78 4.01
1598 5288 1.298264 TTTGAAGTGTGCGCTTGCG 60.298 52.632 9.73 10.90 43.34 4.85
1599 5289 1.987704 TTTGAAGTGTGCGCTTGCGT 61.988 50.000 16.38 0.00 43.34 5.24
1600 5290 2.425773 GAAGTGTGCGCTTGCGTG 60.426 61.111 16.38 0.00 43.34 5.34
1601 5291 3.168237 GAAGTGTGCGCTTGCGTGT 62.168 57.895 16.38 0.00 43.34 4.49
1602 5292 3.453491 AAGTGTGCGCTTGCGTGTG 62.453 57.895 16.38 0.00 43.34 3.82
1603 5293 4.236416 GTGTGCGCTTGCGTGTGT 62.236 61.111 16.38 0.00 43.34 3.72
1604 5294 4.235025 TGTGCGCTTGCGTGTGTG 62.235 61.111 16.38 0.00 43.34 3.82
1608 5298 3.341043 CGCTTGCGTGTGTGCTCT 61.341 61.111 6.86 0.00 35.36 4.09
1609 5299 2.553268 GCTTGCGTGTGTGCTCTC 59.447 61.111 0.00 0.00 35.36 3.20
1610 5300 1.958205 GCTTGCGTGTGTGCTCTCT 60.958 57.895 0.00 0.00 35.36 3.10
1611 5301 0.667487 GCTTGCGTGTGTGCTCTCTA 60.667 55.000 0.00 0.00 35.36 2.43
1612 5302 1.063806 CTTGCGTGTGTGCTCTCTAC 58.936 55.000 0.00 0.00 35.36 2.59
1613 5303 0.673985 TTGCGTGTGTGCTCTCTACT 59.326 50.000 0.00 0.00 35.36 2.57
1614 5304 0.673985 TGCGTGTGTGCTCTCTACTT 59.326 50.000 0.00 0.00 35.36 2.24
1615 5305 1.068588 TGCGTGTGTGCTCTCTACTTT 59.931 47.619 0.00 0.00 35.36 2.66
1616 5306 1.721926 GCGTGTGTGCTCTCTACTTTC 59.278 52.381 0.00 0.00 0.00 2.62
1617 5307 2.608261 GCGTGTGTGCTCTCTACTTTCT 60.608 50.000 0.00 0.00 0.00 2.52
1618 5308 3.643763 CGTGTGTGCTCTCTACTTTCTT 58.356 45.455 0.00 0.00 0.00 2.52
1619 5309 4.051922 CGTGTGTGCTCTCTACTTTCTTT 58.948 43.478 0.00 0.00 0.00 2.52
1620 5310 4.508124 CGTGTGTGCTCTCTACTTTCTTTT 59.492 41.667 0.00 0.00 0.00 2.27
1621 5311 5.690409 CGTGTGTGCTCTCTACTTTCTTTTA 59.310 40.000 0.00 0.00 0.00 1.52
1622 5312 6.129062 CGTGTGTGCTCTCTACTTTCTTTTAG 60.129 42.308 0.00 0.00 0.00 1.85
1623 5313 6.146347 GTGTGTGCTCTCTACTTTCTTTTAGG 59.854 42.308 0.00 0.00 0.00 2.69
1624 5314 6.183360 TGTGTGCTCTCTACTTTCTTTTAGGT 60.183 38.462 0.00 0.00 0.00 3.08
1625 5315 6.146347 GTGTGCTCTCTACTTTCTTTTAGGTG 59.854 42.308 0.00 0.00 0.00 4.00
1626 5316 6.183360 TGTGCTCTCTACTTTCTTTTAGGTGT 60.183 38.462 0.00 0.00 0.00 4.16
1627 5317 6.146347 GTGCTCTCTACTTTCTTTTAGGTGTG 59.854 42.308 0.00 0.00 0.00 3.82
1628 5318 5.120986 GCTCTCTACTTTCTTTTAGGTGTGC 59.879 44.000 0.00 0.00 0.00 4.57
1629 5319 6.420913 TCTCTACTTTCTTTTAGGTGTGCT 57.579 37.500 0.00 0.00 0.00 4.40
1630 5320 6.827727 TCTCTACTTTCTTTTAGGTGTGCTT 58.172 36.000 0.00 0.00 0.00 3.91
1631 5321 7.280356 TCTCTACTTTCTTTTAGGTGTGCTTT 58.720 34.615 0.00 0.00 0.00 3.51
1632 5322 7.226720 TCTCTACTTTCTTTTAGGTGTGCTTTG 59.773 37.037 0.00 0.00 0.00 2.77
1633 5323 5.914898 ACTTTCTTTTAGGTGTGCTTTGT 57.085 34.783 0.00 0.00 0.00 2.83
1634 5324 6.280855 ACTTTCTTTTAGGTGTGCTTTGTT 57.719 33.333 0.00 0.00 0.00 2.83
1635 5325 6.697395 ACTTTCTTTTAGGTGTGCTTTGTTT 58.303 32.000 0.00 0.00 0.00 2.83
1636 5326 6.589907 ACTTTCTTTTAGGTGTGCTTTGTTTG 59.410 34.615 0.00 0.00 0.00 2.93
1637 5327 4.429108 TCTTTTAGGTGTGCTTTGTTTGC 58.571 39.130 0.00 0.00 0.00 3.68
1638 5328 4.159506 TCTTTTAGGTGTGCTTTGTTTGCT 59.840 37.500 0.00 0.00 0.00 3.91
1639 5329 3.435105 TTAGGTGTGCTTTGTTTGCTG 57.565 42.857 0.00 0.00 0.00 4.41
1640 5330 1.185315 AGGTGTGCTTTGTTTGCTGT 58.815 45.000 0.00 0.00 0.00 4.40
1641 5331 1.135024 AGGTGTGCTTTGTTTGCTGTG 60.135 47.619 0.00 0.00 0.00 3.66
1642 5332 1.404047 GGTGTGCTTTGTTTGCTGTGT 60.404 47.619 0.00 0.00 0.00 3.72
1643 5333 1.655099 GTGTGCTTTGTTTGCTGTGTG 59.345 47.619 0.00 0.00 0.00 3.82
1644 5334 0.646895 GTGCTTTGTTTGCTGTGTGC 59.353 50.000 0.00 0.00 43.25 4.57
1645 5335 0.801451 TGCTTTGTTTGCTGTGTGCG 60.801 50.000 0.00 0.00 46.63 5.34
1646 5336 0.801836 GCTTTGTTTGCTGTGTGCGT 60.802 50.000 0.00 0.00 46.63 5.24
1647 5337 0.915904 CTTTGTTTGCTGTGTGCGTG 59.084 50.000 0.00 0.00 46.63 5.34
1648 5338 0.242286 TTTGTTTGCTGTGTGCGTGT 59.758 45.000 0.00 0.00 46.63 4.49
1649 5339 0.455802 TTGTTTGCTGTGTGCGTGTG 60.456 50.000 0.00 0.00 46.63 3.82
1650 5340 2.101965 TTTGCTGTGTGCGTGTGC 59.898 55.556 0.00 0.00 46.63 4.57
1660 5350 2.127270 GCGTGTGCGTGTGGATTG 60.127 61.111 0.00 0.00 40.81 2.67
1661 5351 2.892334 GCGTGTGCGTGTGGATTGT 61.892 57.895 0.00 0.00 40.81 2.71
1662 5352 1.082821 CGTGTGCGTGTGGATTGTG 60.083 57.895 0.00 0.00 0.00 3.33
1663 5353 1.771073 CGTGTGCGTGTGGATTGTGT 61.771 55.000 0.00 0.00 0.00 3.72
1664 5354 0.380378 GTGTGCGTGTGGATTGTGTT 59.620 50.000 0.00 0.00 0.00 3.32
1665 5355 0.380024 TGTGCGTGTGGATTGTGTTG 59.620 50.000 0.00 0.00 0.00 3.33
1666 5356 0.934436 GTGCGTGTGGATTGTGTTGC 60.934 55.000 0.00 0.00 0.00 4.17
1667 5357 1.100463 TGCGTGTGGATTGTGTTGCT 61.100 50.000 0.00 0.00 0.00 3.91
1668 5358 0.661187 GCGTGTGGATTGTGTTGCTG 60.661 55.000 0.00 0.00 0.00 4.41
1669 5359 0.662619 CGTGTGGATTGTGTTGCTGT 59.337 50.000 0.00 0.00 0.00 4.40
1670 5360 1.597690 CGTGTGGATTGTGTTGCTGTG 60.598 52.381 0.00 0.00 0.00 3.66
1671 5361 0.385029 TGTGGATTGTGTTGCTGTGC 59.615 50.000 0.00 0.00 0.00 4.57
1672 5362 0.661187 GTGGATTGTGTTGCTGTGCG 60.661 55.000 0.00 0.00 0.00 5.34
1673 5363 1.100463 TGGATTGTGTTGCTGTGCGT 61.100 50.000 0.00 0.00 0.00 5.24
1674 5364 0.661187 GGATTGTGTTGCTGTGCGTG 60.661 55.000 0.00 0.00 0.00 5.34
1675 5365 0.029300 GATTGTGTTGCTGTGCGTGT 59.971 50.000 0.00 0.00 0.00 4.49
1676 5366 0.248580 ATTGTGTTGCTGTGCGTGTG 60.249 50.000 0.00 0.00 0.00 3.82
1677 5367 1.581727 TTGTGTTGCTGTGCGTGTGT 61.582 50.000 0.00 0.00 0.00 3.72
1678 5368 1.583451 GTGTTGCTGTGCGTGTGTG 60.583 57.895 0.00 0.00 0.00 3.82
1679 5369 2.037702 TGTTGCTGTGCGTGTGTGT 61.038 52.632 0.00 0.00 0.00 3.72
1680 5370 1.583451 GTTGCTGTGCGTGTGTGTG 60.583 57.895 0.00 0.00 0.00 3.82
1681 5371 2.759123 TTGCTGTGCGTGTGTGTGG 61.759 57.895 0.00 0.00 0.00 4.17
1682 5372 3.952675 GCTGTGCGTGTGTGTGGG 61.953 66.667 0.00 0.00 0.00 4.61
1683 5373 2.513666 CTGTGCGTGTGTGTGGGT 60.514 61.111 0.00 0.00 0.00 4.51
1684 5374 2.045829 TGTGCGTGTGTGTGGGTT 60.046 55.556 0.00 0.00 0.00 4.11
1685 5375 2.321668 CTGTGCGTGTGTGTGGGTTG 62.322 60.000 0.00 0.00 0.00 3.77
1686 5376 2.045829 TGCGTGTGTGTGGGTTGT 60.046 55.556 0.00 0.00 0.00 3.32
1687 5377 2.402572 TGCGTGTGTGTGGGTTGTG 61.403 57.895 0.00 0.00 0.00 3.33
1688 5378 2.403378 GCGTGTGTGTGGGTTGTGT 61.403 57.895 0.00 0.00 0.00 3.72
1689 5379 1.427419 CGTGTGTGTGGGTTGTGTG 59.573 57.895 0.00 0.00 0.00 3.82
1690 5380 1.138671 GTGTGTGTGGGTTGTGTGC 59.861 57.895 0.00 0.00 0.00 4.57
1691 5381 1.001517 TGTGTGTGGGTTGTGTGCT 60.002 52.632 0.00 0.00 0.00 4.40
1692 5382 0.610509 TGTGTGTGGGTTGTGTGCTT 60.611 50.000 0.00 0.00 0.00 3.91
1693 5383 0.179140 GTGTGTGGGTTGTGTGCTTG 60.179 55.000 0.00 0.00 0.00 4.01
1694 5384 0.610509 TGTGTGGGTTGTGTGCTTGT 60.611 50.000 0.00 0.00 0.00 3.16
1695 5385 0.179140 GTGTGGGTTGTGTGCTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
1696 5386 0.610509 TGTGGGTTGTGTGCTTGTGT 60.611 50.000 0.00 0.00 0.00 3.72
1697 5387 0.179140 GTGGGTTGTGTGCTTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1698 5388 0.610509 TGGGTTGTGTGCTTGTGTGT 60.611 50.000 0.00 0.00 0.00 3.72
1699 5389 0.530288 GGGTTGTGTGCTTGTGTGTT 59.470 50.000 0.00 0.00 0.00 3.32
1700 5390 1.469079 GGGTTGTGTGCTTGTGTGTTC 60.469 52.381 0.00 0.00 0.00 3.18
1701 5391 1.472480 GGTTGTGTGCTTGTGTGTTCT 59.528 47.619 0.00 0.00 0.00 3.01
1702 5392 2.094752 GGTTGTGTGCTTGTGTGTTCTT 60.095 45.455 0.00 0.00 0.00 2.52
1703 5393 2.916716 GTTGTGTGCTTGTGTGTTCTTG 59.083 45.455 0.00 0.00 0.00 3.02
1704 5394 1.135431 TGTGTGCTTGTGTGTTCTTGC 60.135 47.619 0.00 0.00 0.00 4.01
1705 5395 1.133025 GTGTGCTTGTGTGTTCTTGCT 59.867 47.619 0.00 0.00 0.00 3.91
1706 5396 1.401552 TGTGCTTGTGTGTTCTTGCTC 59.598 47.619 0.00 0.00 0.00 4.26
1707 5397 1.024271 TGCTTGTGTGTTCTTGCTCC 58.976 50.000 0.00 0.00 0.00 4.70
1708 5398 0.040958 GCTTGTGTGTTCTTGCTCCG 60.041 55.000 0.00 0.00 0.00 4.63
1709 5399 1.299541 CTTGTGTGTTCTTGCTCCGT 58.700 50.000 0.00 0.00 0.00 4.69
1710 5400 1.003545 CTTGTGTGTTCTTGCTCCGTG 60.004 52.381 0.00 0.00 0.00 4.94
1711 5401 1.279840 GTGTGTTCTTGCTCCGTGC 59.720 57.895 0.00 0.00 43.25 5.34
1712 5402 2.243957 TGTGTTCTTGCTCCGTGCG 61.244 57.895 0.00 0.00 46.63 5.34
1713 5403 3.345808 TGTTCTTGCTCCGTGCGC 61.346 61.111 0.00 0.00 46.63 6.09
1714 5404 4.430423 GTTCTTGCTCCGTGCGCG 62.430 66.667 13.88 13.88 46.63 6.86
1729 5419 3.542742 GCGCACGCGTCTCCTTAC 61.543 66.667 9.86 0.00 42.09 2.34
1730 5420 3.238241 CGCACGCGTCTCCTTACG 61.238 66.667 9.86 0.57 45.58 3.18
1731 5421 2.879462 GCACGCGTCTCCTTACGG 60.879 66.667 9.86 0.00 43.06 4.02
1732 5422 2.872557 CACGCGTCTCCTTACGGA 59.127 61.111 9.86 0.00 43.06 4.69
2015 5711 6.401688 CGATACCAAAAGCGAGAACACATAAA 60.402 38.462 0.00 0.00 0.00 1.40
2022 5718 4.065088 AGCGAGAACACATAAAGAAAGCA 58.935 39.130 0.00 0.00 0.00 3.91
2302 6014 8.144478 GCTACTTGTGTCTTCCATTATATCAGA 58.856 37.037 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.105709 CCTCCTCCTCCTCCTTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
1 2 0.930726 TCCTCCTCCTCCTCCTTCTC 59.069 60.000 0.00 0.00 0.00 2.87
2 3 0.933700 CTCCTCCTCCTCCTCCTTCT 59.066 60.000 0.00 0.00 0.00 2.85
3 4 0.105709 CCTCCTCCTCCTCCTCCTTC 60.106 65.000 0.00 0.00 0.00 3.46
4 5 0.556380 TCCTCCTCCTCCTCCTCCTT 60.556 60.000 0.00 0.00 0.00 3.36
5 6 1.087725 TCCTCCTCCTCCTCCTCCT 59.912 63.158 0.00 0.00 0.00 3.69
338 353 1.112315 TTTTGCGGGGAATGCACACT 61.112 50.000 0.00 0.00 43.10 3.55
339 354 0.249657 TTTTTGCGGGGAATGCACAC 60.250 50.000 0.00 0.00 43.10 3.82
357 372 6.324770 TGCAAATTCCCTCTTCTTCTTCTTTT 59.675 34.615 0.00 0.00 0.00 2.27
358 373 5.835280 TGCAAATTCCCTCTTCTTCTTCTTT 59.165 36.000 0.00 0.00 0.00 2.52
359 374 5.388654 TGCAAATTCCCTCTTCTTCTTCTT 58.611 37.500 0.00 0.00 0.00 2.52
362 377 5.105997 CGAATGCAAATTCCCTCTTCTTCTT 60.106 40.000 0.00 0.00 0.00 2.52
364 379 4.666237 CGAATGCAAATTCCCTCTTCTTC 58.334 43.478 0.00 0.00 0.00 2.87
366 381 2.424956 GCGAATGCAAATTCCCTCTTCT 59.575 45.455 0.00 0.00 42.15 2.85
367 382 2.802256 GCGAATGCAAATTCCCTCTTC 58.198 47.619 0.00 0.00 42.15 2.87
410 3945 4.319477 GCTGCAAACGAAGAATGTGTAGAA 60.319 41.667 0.00 0.00 0.00 2.10
471 4045 3.696051 ACTGCATGGCGTTATTCTTCATT 59.304 39.130 0.00 0.00 0.00 2.57
550 4124 1.655114 AAGTGGTGCCCAAACCCTCT 61.655 55.000 0.00 0.00 39.70 3.69
640 4217 2.467826 GCCAGAGCTCCATGTTCGC 61.468 63.158 10.93 0.00 35.50 4.70
692 4366 6.534079 CGAGGGAGTATTTTTAACAGTAGTGG 59.466 42.308 1.92 0.00 0.00 4.00
727 4402 6.698380 TCTGACTTTGGATGAAGGTTAGTAC 58.302 40.000 0.00 0.00 31.35 2.73
730 4405 5.997746 TGTTCTGACTTTGGATGAAGGTTAG 59.002 40.000 0.00 0.00 30.78 2.34
735 4410 3.817084 TGCTGTTCTGACTTTGGATGAAG 59.183 43.478 0.00 0.00 0.00 3.02
739 4414 5.413833 CACTAATGCTGTTCTGACTTTGGAT 59.586 40.000 0.00 0.00 0.00 3.41
750 4425 5.523369 AGCTTTTTGACACTAATGCTGTTC 58.477 37.500 8.32 0.00 34.61 3.18
752 4427 4.823989 AGAGCTTTTTGACACTAATGCTGT 59.176 37.500 12.09 7.49 35.63 4.40
753 4428 5.368256 AGAGCTTTTTGACACTAATGCTG 57.632 39.130 12.09 0.00 35.63 4.41
754 4429 7.693969 ATAAGAGCTTTTTGACACTAATGCT 57.306 32.000 0.00 8.69 37.43 3.79
765 4440 9.261180 TCCGTCTCATAATATAAGAGCTTTTTG 57.739 33.333 0.00 0.00 0.00 2.44
767 4442 8.091449 CCTCCGTCTCATAATATAAGAGCTTTT 58.909 37.037 0.00 0.00 0.00 2.27
768 4443 7.310113 CCCTCCGTCTCATAATATAAGAGCTTT 60.310 40.741 0.00 0.00 0.00 3.51
769 4444 6.153680 CCCTCCGTCTCATAATATAAGAGCTT 59.846 42.308 0.00 0.00 0.00 3.74
770 4445 5.654650 CCCTCCGTCTCATAATATAAGAGCT 59.345 44.000 0.00 0.00 0.00 4.09
771 4446 5.652891 TCCCTCCGTCTCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
772 4447 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
775 4450 7.696981 ACTACTCCCTCCGTCTCATAATATAA 58.303 38.462 0.00 0.00 0.00 0.98
776 4451 7.268212 ACTACTCCCTCCGTCTCATAATATA 57.732 40.000 0.00 0.00 0.00 0.86
778 4453 5.579753 ACTACTCCCTCCGTCTCATAATA 57.420 43.478 0.00 0.00 0.00 0.98
785 4460 3.354467 CTGTTTACTACTCCCTCCGTCT 58.646 50.000 0.00 0.00 0.00 4.18
787 4462 2.454538 CCTGTTTACTACTCCCTCCGT 58.545 52.381 0.00 0.00 0.00 4.69
789 4464 3.032459 CTCCCTGTTTACTACTCCCTCC 58.968 54.545 0.00 0.00 0.00 4.30
790 4465 3.032459 CCTCCCTGTTTACTACTCCCTC 58.968 54.545 0.00 0.00 0.00 4.30
791 4466 2.292984 CCCTCCCTGTTTACTACTCCCT 60.293 54.545 0.00 0.00 0.00 4.20
792 4467 2.117051 CCCTCCCTGTTTACTACTCCC 58.883 57.143 0.00 0.00 0.00 4.30
793 4468 3.032459 CTCCCTCCCTGTTTACTACTCC 58.968 54.545 0.00 0.00 0.00 3.85
794 4469 2.431419 GCTCCCTCCCTGTTTACTACTC 59.569 54.545 0.00 0.00 0.00 2.59
795 4470 2.225547 TGCTCCCTCCCTGTTTACTACT 60.226 50.000 0.00 0.00 0.00 2.57
796 4471 2.093606 GTGCTCCCTCCCTGTTTACTAC 60.094 54.545 0.00 0.00 0.00 2.73
797 4472 2.185387 GTGCTCCCTCCCTGTTTACTA 58.815 52.381 0.00 0.00 0.00 1.82
798 4473 0.984995 GTGCTCCCTCCCTGTTTACT 59.015 55.000 0.00 0.00 0.00 2.24
799 4474 0.690762 TGTGCTCCCTCCCTGTTTAC 59.309 55.000 0.00 0.00 0.00 2.01
800 4475 1.281867 CATGTGCTCCCTCCCTGTTTA 59.718 52.381 0.00 0.00 0.00 2.01
801 4476 0.038744 CATGTGCTCCCTCCCTGTTT 59.961 55.000 0.00 0.00 0.00 2.83
802 4477 1.687612 CATGTGCTCCCTCCCTGTT 59.312 57.895 0.00 0.00 0.00 3.16
803 4478 2.976490 GCATGTGCTCCCTCCCTGT 61.976 63.158 0.00 0.00 38.21 4.00
850 4538 5.125417 GTGCATCCCTGTTTTATAAGCAAGA 59.875 40.000 0.00 0.00 0.00 3.02
852 4540 5.016173 AGTGCATCCCTGTTTTATAAGCAA 58.984 37.500 0.00 0.00 0.00 3.91
862 4550 3.299503 ACTTTTCAAGTGCATCCCTGTT 58.700 40.909 0.00 0.00 41.01 3.16
919 4608 3.134127 GCTCGCCATGAACCCCAC 61.134 66.667 0.00 0.00 0.00 4.61
1207 4896 2.409651 CTCCGCGCTCCTGTACTC 59.590 66.667 5.56 0.00 0.00 2.59
1221 4910 0.394352 CCACCAACACCCTATGCTCC 60.394 60.000 0.00 0.00 0.00 4.70
1260 4949 0.250727 CCTGGAACATCACCACGGTT 60.251 55.000 0.00 0.00 38.20 4.44
1380 5069 1.296715 CCTGGTCCCTTCAACGAGG 59.703 63.158 0.00 0.00 36.48 4.63
1415 5104 1.090052 GTCCTGCGCTACATTGGTCC 61.090 60.000 9.73 0.00 0.00 4.46
1442 5131 8.514330 ACCATTAGCAAAACCGATTTAGATAA 57.486 30.769 0.00 0.00 0.00 1.75
1443 5132 7.771361 TGACCATTAGCAAAACCGATTTAGATA 59.229 33.333 0.00 0.00 0.00 1.98
1456 5146 1.544724 GGTGCCTGACCATTAGCAAA 58.455 50.000 0.00 0.00 45.34 3.68
1468 5158 3.411446 TGACAGTAATTTCAGGTGCCTG 58.589 45.455 11.82 11.82 44.86 4.85
1469 5159 3.788227 TGACAGTAATTTCAGGTGCCT 57.212 42.857 0.00 0.00 0.00 4.75
1470 5160 5.048083 TCAATTGACAGTAATTTCAGGTGCC 60.048 40.000 3.38 0.00 0.00 5.01
1471 5161 6.012658 TCAATTGACAGTAATTTCAGGTGC 57.987 37.500 3.38 0.00 0.00 5.01
1472 5162 8.918658 CAAATCAATTGACAGTAATTTCAGGTG 58.081 33.333 11.07 0.00 41.85 4.00
1473 5163 8.090214 CCAAATCAATTGACAGTAATTTCAGGT 58.910 33.333 11.07 0.00 41.85 4.00
1474 5164 7.063780 GCCAAATCAATTGACAGTAATTTCAGG 59.936 37.037 11.07 6.20 41.85 3.86
1475 5165 7.599621 TGCCAAATCAATTGACAGTAATTTCAG 59.400 33.333 11.07 1.98 41.85 3.02
1476 5166 7.384660 GTGCCAAATCAATTGACAGTAATTTCA 59.615 33.333 11.07 0.00 41.85 2.69
1477 5167 7.148590 GGTGCCAAATCAATTGACAGTAATTTC 60.149 37.037 11.07 0.00 41.85 2.17
1478 5168 6.650390 GGTGCCAAATCAATTGACAGTAATTT 59.350 34.615 11.07 3.45 41.85 1.82
1479 5169 6.165577 GGTGCCAAATCAATTGACAGTAATT 58.834 36.000 11.07 0.00 41.85 1.40
1480 5170 5.337491 GGGTGCCAAATCAATTGACAGTAAT 60.337 40.000 11.07 0.00 41.85 1.89
1481 5171 4.021544 GGGTGCCAAATCAATTGACAGTAA 60.022 41.667 11.07 0.00 41.85 2.24
1482 5172 3.509575 GGGTGCCAAATCAATTGACAGTA 59.490 43.478 11.07 0.00 41.85 2.74
1483 5173 2.299867 GGGTGCCAAATCAATTGACAGT 59.700 45.455 11.07 0.00 41.85 3.55
1484 5174 2.564062 AGGGTGCCAAATCAATTGACAG 59.436 45.455 11.07 3.51 41.85 3.51
1485 5175 2.607499 AGGGTGCCAAATCAATTGACA 58.393 42.857 11.07 0.50 41.85 3.58
1486 5176 3.328505 CAAGGGTGCCAAATCAATTGAC 58.671 45.455 11.07 0.00 41.85 3.18
1487 5177 2.302445 CCAAGGGTGCCAAATCAATTGA 59.698 45.455 11.26 11.26 41.85 2.57
1488 5178 2.616001 CCCAAGGGTGCCAAATCAATTG 60.616 50.000 0.00 0.00 38.84 2.32
1489 5179 1.629861 CCCAAGGGTGCCAAATCAATT 59.370 47.619 0.00 0.00 0.00 2.32
1490 5180 1.278537 CCCAAGGGTGCCAAATCAAT 58.721 50.000 0.00 0.00 0.00 2.57
1491 5181 2.757313 CCCAAGGGTGCCAAATCAA 58.243 52.632 0.00 0.00 0.00 2.57
1492 5182 4.537260 CCCAAGGGTGCCAAATCA 57.463 55.556 0.00 0.00 0.00 2.57
1516 5206 9.084533 AGGCCTAATTGTACTGATTTGTAAAAA 57.915 29.630 1.29 0.00 0.00 1.94
1517 5207 8.644374 AGGCCTAATTGTACTGATTTGTAAAA 57.356 30.769 1.29 0.00 0.00 1.52
1518 5208 9.391006 CTAGGCCTAATTGTACTGATTTGTAAA 57.609 33.333 14.85 0.00 0.00 2.01
1519 5209 7.990886 CCTAGGCCTAATTGTACTGATTTGTAA 59.009 37.037 14.85 0.00 0.00 2.41
1520 5210 7.419750 CCCTAGGCCTAATTGTACTGATTTGTA 60.420 40.741 14.85 0.00 0.00 2.41
1521 5211 6.357367 CCTAGGCCTAATTGTACTGATTTGT 58.643 40.000 14.85 0.00 0.00 2.83
1522 5212 5.765182 CCCTAGGCCTAATTGTACTGATTTG 59.235 44.000 14.85 0.00 0.00 2.32
1523 5213 5.670361 TCCCTAGGCCTAATTGTACTGATTT 59.330 40.000 14.85 0.00 0.00 2.17
1524 5214 5.224441 TCCCTAGGCCTAATTGTACTGATT 58.776 41.667 14.85 0.00 0.00 2.57
1525 5215 4.827789 TCCCTAGGCCTAATTGTACTGAT 58.172 43.478 14.85 0.00 0.00 2.90
1526 5216 4.223953 CTCCCTAGGCCTAATTGTACTGA 58.776 47.826 14.85 1.17 0.00 3.41
1527 5217 3.325135 CCTCCCTAGGCCTAATTGTACTG 59.675 52.174 14.85 0.00 35.64 2.74
1528 5218 3.588569 CCTCCCTAGGCCTAATTGTACT 58.411 50.000 14.85 0.00 35.64 2.73
1549 5239 3.880846 CCGAAATGAGGCTGCGGC 61.881 66.667 9.72 9.72 35.17 6.53
1550 5240 3.204827 CCCGAAATGAGGCTGCGG 61.205 66.667 0.00 0.00 41.53 5.69
1551 5241 3.880846 GCCCGAAATGAGGCTGCG 61.881 66.667 0.00 0.00 46.14 5.18
1556 5246 4.794648 TGGCGGCCCGAAATGAGG 62.795 66.667 17.97 0.00 0.00 3.86
1557 5247 3.508840 GTGGCGGCCCGAAATGAG 61.509 66.667 17.97 0.00 0.00 2.90
1558 5248 3.851897 TTGTGGCGGCCCGAAATGA 62.852 57.895 17.97 0.00 0.00 2.57
1559 5249 2.709883 ATTGTGGCGGCCCGAAATG 61.710 57.895 17.97 0.00 0.00 2.32
1560 5250 2.362375 ATTGTGGCGGCCCGAAAT 60.362 55.556 17.97 10.58 0.00 2.17
1561 5251 3.369400 CATTGTGGCGGCCCGAAA 61.369 61.111 17.97 8.56 0.00 3.46
1565 5255 3.310307 AAACCATTGTGGCGGCCC 61.310 61.111 17.97 8.58 42.67 5.80
1566 5256 2.048316 CAAACCATTGTGGCGGCC 60.048 61.111 13.32 13.32 42.67 6.13
1567 5257 0.667184 CTTCAAACCATTGTGGCGGC 60.667 55.000 0.00 0.00 42.67 6.53
1568 5258 0.673437 ACTTCAAACCATTGTGGCGG 59.327 50.000 0.00 0.00 42.67 6.13
1569 5259 1.066908 ACACTTCAAACCATTGTGGCG 59.933 47.619 0.00 0.00 42.67 5.69
1570 5260 2.472816 CACACTTCAAACCATTGTGGC 58.527 47.619 0.00 0.00 42.67 5.01
1571 5261 2.472816 GCACACTTCAAACCATTGTGG 58.527 47.619 0.00 0.00 45.02 4.17
1572 5262 2.118683 CGCACACTTCAAACCATTGTG 58.881 47.619 0.00 0.00 40.47 3.33
1573 5263 1.535860 GCGCACACTTCAAACCATTGT 60.536 47.619 0.30 0.00 37.79 2.71
1574 5264 1.130955 GCGCACACTTCAAACCATTG 58.869 50.000 0.30 0.00 37.92 2.82
1575 5265 1.032014 AGCGCACACTTCAAACCATT 58.968 45.000 11.47 0.00 0.00 3.16
1576 5266 1.032014 AAGCGCACACTTCAAACCAT 58.968 45.000 11.47 0.00 0.00 3.55
1577 5267 0.100325 CAAGCGCACACTTCAAACCA 59.900 50.000 11.47 0.00 0.00 3.67
1578 5268 1.208642 GCAAGCGCACACTTCAAACC 61.209 55.000 11.47 0.00 38.36 3.27
1579 5269 1.531522 CGCAAGCGCACACTTCAAAC 61.532 55.000 11.47 0.00 38.40 2.93
1580 5270 1.298264 CGCAAGCGCACACTTCAAA 60.298 52.632 11.47 0.00 38.40 2.69
1581 5271 2.327592 CGCAAGCGCACACTTCAA 59.672 55.556 11.47 0.00 38.40 2.69
1582 5272 2.894879 ACGCAAGCGCACACTTCA 60.895 55.556 15.09 0.00 44.19 3.02
1583 5273 2.425773 CACGCAAGCGCACACTTC 60.426 61.111 15.09 0.00 44.19 3.01
1584 5274 3.202001 ACACGCAAGCGCACACTT 61.202 55.556 15.09 0.00 44.19 3.16
1585 5275 3.940640 CACACGCAAGCGCACACT 61.941 61.111 15.09 0.00 44.19 3.55
1586 5276 4.236416 ACACACGCAAGCGCACAC 62.236 61.111 15.09 0.00 44.19 3.82
1587 5277 4.235025 CACACACGCAAGCGCACA 62.235 61.111 15.09 0.00 44.19 4.57
1591 5281 3.287121 GAGAGCACACACGCAAGCG 62.287 63.158 13.50 13.50 46.03 4.68
1592 5282 0.667487 TAGAGAGCACACACGCAAGC 60.667 55.000 0.00 0.00 45.62 4.01
1594 5284 0.673985 AGTAGAGAGCACACACGCAA 59.326 50.000 0.00 0.00 0.00 4.85
1595 5285 0.673985 AAGTAGAGAGCACACACGCA 59.326 50.000 0.00 0.00 0.00 5.24
1596 5286 1.721926 GAAAGTAGAGAGCACACACGC 59.278 52.381 0.00 0.00 0.00 5.34
1597 5287 3.290308 AGAAAGTAGAGAGCACACACG 57.710 47.619 0.00 0.00 0.00 4.49
1598 5288 5.993106 AAAAGAAAGTAGAGAGCACACAC 57.007 39.130 0.00 0.00 0.00 3.82
1599 5289 6.183360 ACCTAAAAGAAAGTAGAGAGCACACA 60.183 38.462 0.00 0.00 0.00 3.72
1600 5290 6.146347 CACCTAAAAGAAAGTAGAGAGCACAC 59.854 42.308 0.00 0.00 0.00 3.82
1601 5291 6.183360 ACACCTAAAAGAAAGTAGAGAGCACA 60.183 38.462 0.00 0.00 0.00 4.57
1602 5292 6.146347 CACACCTAAAAGAAAGTAGAGAGCAC 59.854 42.308 0.00 0.00 0.00 4.40
1603 5293 6.223852 CACACCTAAAAGAAAGTAGAGAGCA 58.776 40.000 0.00 0.00 0.00 4.26
1604 5294 5.120986 GCACACCTAAAAGAAAGTAGAGAGC 59.879 44.000 0.00 0.00 0.00 4.09
1605 5295 6.459923 AGCACACCTAAAAGAAAGTAGAGAG 58.540 40.000 0.00 0.00 0.00 3.20
1606 5296 6.420913 AGCACACCTAAAAGAAAGTAGAGA 57.579 37.500 0.00 0.00 0.00 3.10
1607 5297 7.012421 ACAAAGCACACCTAAAAGAAAGTAGAG 59.988 37.037 0.00 0.00 0.00 2.43
1608 5298 6.826741 ACAAAGCACACCTAAAAGAAAGTAGA 59.173 34.615 0.00 0.00 0.00 2.59
1609 5299 7.027778 ACAAAGCACACCTAAAAGAAAGTAG 57.972 36.000 0.00 0.00 0.00 2.57
1610 5300 7.399245 AACAAAGCACACCTAAAAGAAAGTA 57.601 32.000 0.00 0.00 0.00 2.24
1611 5301 5.914898 ACAAAGCACACCTAAAAGAAAGT 57.085 34.783 0.00 0.00 0.00 2.66
1612 5302 6.455513 GCAAACAAAGCACACCTAAAAGAAAG 60.456 38.462 0.00 0.00 0.00 2.62
1613 5303 5.350091 GCAAACAAAGCACACCTAAAAGAAA 59.650 36.000 0.00 0.00 0.00 2.52
1614 5304 4.867608 GCAAACAAAGCACACCTAAAAGAA 59.132 37.500 0.00 0.00 0.00 2.52
1615 5305 4.159506 AGCAAACAAAGCACACCTAAAAGA 59.840 37.500 0.00 0.00 0.00 2.52
1616 5306 4.268405 CAGCAAACAAAGCACACCTAAAAG 59.732 41.667 0.00 0.00 0.00 2.27
1617 5307 4.180057 CAGCAAACAAAGCACACCTAAAA 58.820 39.130 0.00 0.00 0.00 1.52
1618 5308 3.194542 ACAGCAAACAAAGCACACCTAAA 59.805 39.130 0.00 0.00 0.00 1.85
1619 5309 2.757868 ACAGCAAACAAAGCACACCTAA 59.242 40.909 0.00 0.00 0.00 2.69
1620 5310 2.098934 CACAGCAAACAAAGCACACCTA 59.901 45.455 0.00 0.00 0.00 3.08
1621 5311 1.135024 CACAGCAAACAAAGCACACCT 60.135 47.619 0.00 0.00 0.00 4.00
1622 5312 1.280066 CACAGCAAACAAAGCACACC 58.720 50.000 0.00 0.00 0.00 4.16
1623 5313 1.655099 CACACAGCAAACAAAGCACAC 59.345 47.619 0.00 0.00 0.00 3.82
1624 5314 1.993542 CACACAGCAAACAAAGCACA 58.006 45.000 0.00 0.00 0.00 4.57
1625 5315 0.646895 GCACACAGCAAACAAAGCAC 59.353 50.000 0.00 0.00 44.79 4.40
1626 5316 0.801451 CGCACACAGCAAACAAAGCA 60.801 50.000 0.00 0.00 46.13 3.91
1627 5317 0.801836 ACGCACACAGCAAACAAAGC 60.802 50.000 0.00 0.00 46.13 3.51
1628 5318 0.915904 CACGCACACAGCAAACAAAG 59.084 50.000 0.00 0.00 46.13 2.77
1629 5319 0.242286 ACACGCACACAGCAAACAAA 59.758 45.000 0.00 0.00 46.13 2.83
1630 5320 0.455802 CACACGCACACAGCAAACAA 60.456 50.000 0.00 0.00 46.13 2.83
1631 5321 1.136356 CACACGCACACAGCAAACA 59.864 52.632 0.00 0.00 46.13 2.83
1632 5322 2.223549 GCACACGCACACAGCAAAC 61.224 57.895 0.00 0.00 46.13 2.93
1633 5323 2.101965 GCACACGCACACAGCAAA 59.898 55.556 0.00 0.00 46.13 3.68
1634 5324 4.235025 CGCACACGCACACAGCAA 62.235 61.111 0.00 0.00 46.13 3.91
1636 5326 4.943591 CACGCACACGCACACAGC 62.944 66.667 0.00 0.00 45.53 4.40
1637 5327 3.563088 ACACGCACACGCACACAG 61.563 61.111 0.00 0.00 45.53 3.66
1638 5328 3.858989 CACACGCACACGCACACA 61.859 61.111 0.00 0.00 45.53 3.72
1639 5329 4.589700 CCACACGCACACGCACAC 62.590 66.667 0.00 0.00 45.53 3.82
1640 5330 4.821589 TCCACACGCACACGCACA 62.822 61.111 0.00 0.00 45.53 4.57
1641 5331 2.892334 AATCCACACGCACACGCAC 61.892 57.895 0.00 0.00 45.53 5.34
1642 5332 2.590291 AATCCACACGCACACGCA 60.590 55.556 0.00 0.00 45.53 5.24
1643 5333 2.127270 CAATCCACACGCACACGC 60.127 61.111 0.00 0.00 45.53 5.34
1645 5335 0.380378 AACACAATCCACACGCACAC 59.620 50.000 0.00 0.00 0.00 3.82
1646 5336 0.380024 CAACACAATCCACACGCACA 59.620 50.000 0.00 0.00 0.00 4.57
1647 5337 0.934436 GCAACACAATCCACACGCAC 60.934 55.000 0.00 0.00 0.00 5.34
1648 5338 1.100463 AGCAACACAATCCACACGCA 61.100 50.000 0.00 0.00 0.00 5.24
1649 5339 0.661187 CAGCAACACAATCCACACGC 60.661 55.000 0.00 0.00 0.00 5.34
1650 5340 0.662619 ACAGCAACACAATCCACACG 59.337 50.000 0.00 0.00 0.00 4.49
1651 5341 1.865248 GCACAGCAACACAATCCACAC 60.865 52.381 0.00 0.00 0.00 3.82
1652 5342 0.385029 GCACAGCAACACAATCCACA 59.615 50.000 0.00 0.00 0.00 4.17
1653 5343 0.661187 CGCACAGCAACACAATCCAC 60.661 55.000 0.00 0.00 0.00 4.02
1654 5344 1.100463 ACGCACAGCAACACAATCCA 61.100 50.000 0.00 0.00 0.00 3.41
1655 5345 0.661187 CACGCACAGCAACACAATCC 60.661 55.000 0.00 0.00 0.00 3.01
1656 5346 0.029300 ACACGCACAGCAACACAATC 59.971 50.000 0.00 0.00 0.00 2.67
1657 5347 0.248580 CACACGCACAGCAACACAAT 60.249 50.000 0.00 0.00 0.00 2.71
1658 5348 1.136356 CACACGCACAGCAACACAA 59.864 52.632 0.00 0.00 0.00 3.33
1659 5349 2.037702 ACACACGCACAGCAACACA 61.038 52.632 0.00 0.00 0.00 3.72
1660 5350 1.583451 CACACACGCACAGCAACAC 60.583 57.895 0.00 0.00 0.00 3.32
1661 5351 2.037702 ACACACACGCACAGCAACA 61.038 52.632 0.00 0.00 0.00 3.33
1662 5352 1.583451 CACACACACGCACAGCAAC 60.583 57.895 0.00 0.00 0.00 4.17
1663 5353 2.759123 CCACACACACGCACAGCAA 61.759 57.895 0.00 0.00 0.00 3.91
1664 5354 3.201297 CCACACACACGCACAGCA 61.201 61.111 0.00 0.00 0.00 4.41
1665 5355 3.952675 CCCACACACACGCACAGC 61.953 66.667 0.00 0.00 0.00 4.40
1666 5356 2.112198 AACCCACACACACGCACAG 61.112 57.895 0.00 0.00 0.00 3.66
1667 5357 2.045829 AACCCACACACACGCACA 60.046 55.556 0.00 0.00 0.00 4.57
1668 5358 2.403378 ACAACCCACACACACGCAC 61.403 57.895 0.00 0.00 0.00 5.34
1669 5359 2.045829 ACAACCCACACACACGCA 60.046 55.556 0.00 0.00 0.00 5.24
1670 5360 2.403378 ACACAACCCACACACACGC 61.403 57.895 0.00 0.00 0.00 5.34
1671 5361 1.427419 CACACAACCCACACACACG 59.573 57.895 0.00 0.00 0.00 4.49
1672 5362 1.138671 GCACACAACCCACACACAC 59.861 57.895 0.00 0.00 0.00 3.82
1673 5363 0.610509 AAGCACACAACCCACACACA 60.611 50.000 0.00 0.00 0.00 3.72
1674 5364 0.179140 CAAGCACACAACCCACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1675 5365 0.610509 ACAAGCACACAACCCACACA 60.611 50.000 0.00 0.00 0.00 3.72
1676 5366 0.179140 CACAAGCACACAACCCACAC 60.179 55.000 0.00 0.00 0.00 3.82
1677 5367 0.610509 ACACAAGCACACAACCCACA 60.611 50.000 0.00 0.00 0.00 4.17
1678 5368 0.179140 CACACAAGCACACAACCCAC 60.179 55.000 0.00 0.00 0.00 4.61
1679 5369 0.610509 ACACACAAGCACACAACCCA 60.611 50.000 0.00 0.00 0.00 4.51
1680 5370 0.530288 AACACACAAGCACACAACCC 59.470 50.000 0.00 0.00 0.00 4.11
1681 5371 1.472480 AGAACACACAAGCACACAACC 59.528 47.619 0.00 0.00 0.00 3.77
1682 5372 2.916716 CAAGAACACACAAGCACACAAC 59.083 45.455 0.00 0.00 0.00 3.32
1683 5373 2.670789 GCAAGAACACACAAGCACACAA 60.671 45.455 0.00 0.00 0.00 3.33
1684 5374 1.135431 GCAAGAACACACAAGCACACA 60.135 47.619 0.00 0.00 0.00 3.72
1685 5375 1.133025 AGCAAGAACACACAAGCACAC 59.867 47.619 0.00 0.00 0.00 3.82
1686 5376 1.401552 GAGCAAGAACACACAAGCACA 59.598 47.619 0.00 0.00 0.00 4.57
1687 5377 1.268743 GGAGCAAGAACACACAAGCAC 60.269 52.381 0.00 0.00 0.00 4.40
1688 5378 1.024271 GGAGCAAGAACACACAAGCA 58.976 50.000 0.00 0.00 0.00 3.91
1689 5379 0.040958 CGGAGCAAGAACACACAAGC 60.041 55.000 0.00 0.00 0.00 4.01
1690 5380 1.003545 CACGGAGCAAGAACACACAAG 60.004 52.381 0.00 0.00 0.00 3.16
1691 5381 1.013596 CACGGAGCAAGAACACACAA 58.986 50.000 0.00 0.00 0.00 3.33
1692 5382 1.436195 GCACGGAGCAAGAACACACA 61.436 55.000 0.00 0.00 44.79 3.72
1693 5383 1.279840 GCACGGAGCAAGAACACAC 59.720 57.895 0.00 0.00 44.79 3.82
1694 5384 2.243957 CGCACGGAGCAAGAACACA 61.244 57.895 3.06 0.00 46.13 3.72
1695 5385 2.551270 CGCACGGAGCAAGAACAC 59.449 61.111 3.06 0.00 46.13 3.32
1696 5386 3.345808 GCGCACGGAGCAAGAACA 61.346 61.111 0.30 0.00 46.13 3.18
1697 5387 4.430423 CGCGCACGGAGCAAGAAC 62.430 66.667 8.75 0.00 46.13 3.01
1712 5402 3.542742 GTAAGGAGACGCGTGCGC 61.543 66.667 20.70 10.30 44.19 6.09
1713 5403 3.238241 CGTAAGGAGACGCGTGCG 61.238 66.667 20.70 13.39 46.03 5.34
1725 5415 6.148264 GTCCCGATCTAGTTTATTCCGTAAG 58.852 44.000 0.00 0.00 0.00 2.34
1726 5416 5.010012 GGTCCCGATCTAGTTTATTCCGTAA 59.990 44.000 0.00 0.00 0.00 3.18
1727 5417 4.520492 GGTCCCGATCTAGTTTATTCCGTA 59.480 45.833 0.00 0.00 0.00 4.02
1728 5418 3.320256 GGTCCCGATCTAGTTTATTCCGT 59.680 47.826 0.00 0.00 0.00 4.69
1729 5419 3.611057 CGGTCCCGATCTAGTTTATTCCG 60.611 52.174 0.00 0.00 42.83 4.30
1730 5420 3.860002 GCGGTCCCGATCTAGTTTATTCC 60.860 52.174 10.46 0.00 42.83 3.01
1731 5421 3.315418 GCGGTCCCGATCTAGTTTATTC 58.685 50.000 10.46 0.00 42.83 1.75
1732 5422 2.288030 CGCGGTCCCGATCTAGTTTATT 60.288 50.000 10.46 0.00 42.83 1.40
1808 5503 8.535335 TGCAAATGCTATATTTGGGTTCTTTTA 58.465 29.630 6.97 0.00 42.66 1.52
2015 5711 1.071699 TGGCTCCGTAGTTTGCTTTCT 59.928 47.619 0.00 0.00 0.00 2.52
2022 5718 4.755266 AGTGATTATGGCTCCGTAGTTT 57.245 40.909 0.00 0.00 0.00 2.66
2302 6014 5.087323 TGGACTACTCTGTTGGAGATCTTT 58.913 41.667 0.00 0.00 44.45 2.52
2374 6114 5.363101 CAATAACATGAGGCTTGCTAGAGA 58.637 41.667 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.