Multiple sequence alignment - TraesCS1D01G333500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G333500 chr1D 100.000 3213 0 0 1 3213 423669267 423672479 0.000000e+00 5934.0
1 TraesCS1D01G333500 chr1D 93.019 573 37 1 3 575 142800251 142800820 0.000000e+00 833.0
2 TraesCS1D01G333500 chr1A 96.670 1051 23 4 1095 2142 519872304 519873345 0.000000e+00 1736.0
3 TraesCS1D01G333500 chr1A 81.689 912 137 25 1 892 410449115 410450016 0.000000e+00 732.0
4 TraesCS1D01G333500 chr1A 94.208 259 14 1 2866 3124 519891384 519891641 8.350000e-106 394.0
5 TraesCS1D01G333500 chr1A 96.939 196 5 1 2561 2756 519873495 519873689 8.590000e-86 327.0
6 TraesCS1D01G333500 chr1A 95.122 41 2 0 2828 2868 536438298 536438338 7.440000e-07 65.8
7 TraesCS1D01G333500 chr1B 91.633 1243 56 14 896 2123 573081109 573079900 0.000000e+00 1676.0
8 TraesCS1D01G333500 chr1B 90.110 273 25 2 2284 2555 58253332 58253061 1.420000e-93 353.0
9 TraesCS1D01G333500 chr1B 94.845 194 9 1 2931 3124 573077659 573077467 5.210000e-78 302.0
10 TraesCS1D01G333500 chr1B 95.210 167 7 1 2582 2748 573079736 573079571 2.460000e-66 263.0
11 TraesCS1D01G333500 chr1B 93.333 60 1 1 2237 2293 573079802 573079743 5.710000e-13 86.1
12 TraesCS1D01G333500 chr1B 100.000 34 0 0 3179 3212 573075978 573075945 2.680000e-06 63.9
13 TraesCS1D01G333500 chr2D 85.841 904 100 22 4 886 566733093 566732197 0.000000e+00 935.0
14 TraesCS1D01G333500 chr2D 86.088 611 65 14 285 884 143233684 143234285 9.720000e-180 640.0
15 TraesCS1D01G333500 chr2D 91.288 264 21 2 2290 2552 589492781 589493043 3.050000e-95 359.0
16 TraesCS1D01G333500 chr7D 83.925 902 119 22 1 884 435524278 435525171 0.000000e+00 839.0
17 TraesCS1D01G333500 chr7D 92.721 577 38 2 3 579 274959961 274960533 0.000000e+00 830.0
18 TraesCS1D01G333500 chr7D 95.000 40 1 1 2830 2868 194496279 194496318 9.620000e-06 62.1
19 TraesCS1D01G333500 chr4D 83.853 898 108 26 1 883 490097711 490096836 0.000000e+00 821.0
20 TraesCS1D01G333500 chr4D 96.591 264 9 0 2292 2555 416431594 416431857 3.810000e-119 438.0
21 TraesCS1D01G333500 chr4D 91.288 264 23 0 2292 2555 72089293 72089030 8.470000e-96 361.0
22 TraesCS1D01G333500 chr5D 82.561 906 127 26 1 884 170530259 170531155 0.000000e+00 769.0
23 TraesCS1D01G333500 chr5D 82.366 896 104 24 2 884 431185126 431184272 0.000000e+00 730.0
24 TraesCS1D01G333500 chr7A 81.707 902 129 28 3 884 126936597 126937482 0.000000e+00 719.0
25 TraesCS1D01G333500 chr7A 81.388 908 141 23 1 888 65161611 65160712 0.000000e+00 715.0
26 TraesCS1D01G333500 chr7A 89.695 262 25 2 2866 3127 205182977 205183236 1.850000e-87 333.0
27 TraesCS1D01G333500 chr7A 93.750 80 4 1 2788 2866 345765940 345766019 5.630000e-23 119.0
28 TraesCS1D01G333500 chr7A 93.846 65 4 0 3149 3213 205183234 205183298 7.340000e-17 99.0
29 TraesCS1D01G333500 chr2A 81.223 703 107 19 168 855 473608411 473607719 7.840000e-151 544.0
30 TraesCS1D01G333500 chr2A 95.238 63 2 1 2805 2866 499562742 499562804 7.340000e-17 99.0
31 TraesCS1D01G333500 chr5A 91.288 264 23 0 2292 2555 356183973 356183710 8.470000e-96 361.0
32 TraesCS1D01G333500 chr5A 85.542 83 11 1 2788 2869 689652741 689652659 5.710000e-13 86.1
33 TraesCS1D01G333500 chr7B 90.706 269 24 1 2287 2555 58434217 58434484 1.100000e-94 357.0
34 TraesCS1D01G333500 chr6B 90.182 275 25 2 2292 2565 688594847 688594574 1.100000e-94 357.0
35 TraesCS1D01G333500 chr3A 90.370 270 26 0 2292 2561 12408733 12409002 3.940000e-94 355.0
36 TraesCS1D01G333500 chr2B 88.772 285 29 3 2292 2576 101501604 101501323 2.370000e-91 346.0
37 TraesCS1D01G333500 chr6A 88.845 251 27 1 2868 3118 277577686 277577437 1.120000e-79 307.0
38 TraesCS1D01G333500 chr6D 91.566 83 6 1 2788 2869 429712083 429712165 2.620000e-21 113.0
39 TraesCS1D01G333500 chr3B 87.059 85 10 1 2788 2871 174898168 174898084 9.490000e-16 95.3
40 TraesCS1D01G333500 chr3B 95.238 42 2 0 2828 2869 533452597 533452638 2.070000e-07 67.6
41 TraesCS1D01G333500 chr4B 97.368 38 1 0 2829 2866 553527073 553527036 7.440000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G333500 chr1D 423669267 423672479 3212 False 5934.0 5934 100.0000 1 3213 1 chr1D.!!$F2 3212
1 TraesCS1D01G333500 chr1D 142800251 142800820 569 False 833.0 833 93.0190 3 575 1 chr1D.!!$F1 572
2 TraesCS1D01G333500 chr1A 519872304 519873689 1385 False 1031.5 1736 96.8045 1095 2756 2 chr1A.!!$F4 1661
3 TraesCS1D01G333500 chr1A 410449115 410450016 901 False 732.0 732 81.6890 1 892 1 chr1A.!!$F1 891
4 TraesCS1D01G333500 chr1B 573075945 573081109 5164 True 478.2 1676 95.0042 896 3212 5 chr1B.!!$R2 2316
5 TraesCS1D01G333500 chr2D 566732197 566733093 896 True 935.0 935 85.8410 4 886 1 chr2D.!!$R1 882
6 TraesCS1D01G333500 chr2D 143233684 143234285 601 False 640.0 640 86.0880 285 884 1 chr2D.!!$F1 599
7 TraesCS1D01G333500 chr7D 435524278 435525171 893 False 839.0 839 83.9250 1 884 1 chr7D.!!$F3 883
8 TraesCS1D01G333500 chr7D 274959961 274960533 572 False 830.0 830 92.7210 3 579 1 chr7D.!!$F2 576
9 TraesCS1D01G333500 chr4D 490096836 490097711 875 True 821.0 821 83.8530 1 883 1 chr4D.!!$R2 882
10 TraesCS1D01G333500 chr5D 170530259 170531155 896 False 769.0 769 82.5610 1 884 1 chr5D.!!$F1 883
11 TraesCS1D01G333500 chr5D 431184272 431185126 854 True 730.0 730 82.3660 2 884 1 chr5D.!!$R1 882
12 TraesCS1D01G333500 chr7A 126936597 126937482 885 False 719.0 719 81.7070 3 884 1 chr7A.!!$F1 881
13 TraesCS1D01G333500 chr7A 65160712 65161611 899 True 715.0 715 81.3880 1 888 1 chr7A.!!$R1 887
14 TraesCS1D01G333500 chr2A 473607719 473608411 692 True 544.0 544 81.2230 168 855 1 chr2A.!!$R1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 942 0.036577 CTGGAGTTGGCCTCACAGAG 60.037 60.0 3.32 0.0 42.40 3.35 F
964 1017 0.108945 AAGCCGTTGCCGACTACTAC 60.109 55.0 0.00 0.0 38.69 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 2236 0.317519 CCGCACCCTGTTTTCGAAAC 60.318 55.0 10.79 6.8 0.00 2.78 R
2854 3103 0.464036 CGTGGCTAAGGCTGGTCATA 59.536 55.0 0.00 0.0 38.73 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 172 0.880278 CATACCCCATCGGTTGAGCG 60.880 60.000 0.00 0.00 45.36 5.03
262 272 1.463444 GTAATGAGTGACAACGGTGCC 59.537 52.381 0.00 0.00 0.00 5.01
314 324 1.593196 CCGACCGCCATTCATGTATT 58.407 50.000 0.00 0.00 0.00 1.89
488 499 0.179045 CCGGATCCGCTTCAAATCCT 60.179 55.000 29.12 0.00 37.42 3.24
490 501 1.312815 GGATCCGCTTCAAATCCTGG 58.687 55.000 0.00 0.00 36.76 4.45
654 701 1.532238 GGGCGGATAGAAAAGGGCT 59.468 57.895 0.00 0.00 0.00 5.19
738 787 3.792124 GCTGTCCGTTTCACCTCAAAAAG 60.792 47.826 0.00 0.00 0.00 2.27
739 788 2.098443 TGTCCGTTTCACCTCAAAAAGC 59.902 45.455 0.00 0.00 0.00 3.51
782 832 7.393234 AGGATGGATCGAAAAAGACATAAAACA 59.607 33.333 0.00 0.00 0.00 2.83
812 862 1.348538 CGTTTACATCCGCGTGCTGA 61.349 55.000 4.92 0.00 0.00 4.26
834 885 2.245096 CGTCTGGTACGTCCGTTTTAG 58.755 52.381 0.00 0.00 46.72 1.85
843 894 3.465871 ACGTCCGTTTTAGCCTAAACAA 58.534 40.909 0.00 0.00 37.77 2.83
889 941 2.061220 CTGGAGTTGGCCTCACAGA 58.939 57.895 3.32 0.00 42.40 3.41
890 942 0.036577 CTGGAGTTGGCCTCACAGAG 60.037 60.000 3.32 0.00 42.40 3.35
891 943 1.376553 GGAGTTGGCCTCACAGAGC 60.377 63.158 3.32 0.00 42.40 4.09
927 979 4.101448 GCCATGAGTCGCCCACCT 62.101 66.667 0.00 0.00 0.00 4.00
949 1002 2.671963 GGTCGGTGGTTCCAAGCC 60.672 66.667 0.00 0.00 35.57 4.35
961 1014 2.388232 CCAAGCCGTTGCCGACTAC 61.388 63.158 0.00 0.00 38.69 2.73
962 1015 1.374252 CAAGCCGTTGCCGACTACT 60.374 57.895 0.00 0.00 38.69 2.57
963 1016 0.108992 CAAGCCGTTGCCGACTACTA 60.109 55.000 0.00 0.00 38.69 1.82
964 1017 0.108945 AAGCCGTTGCCGACTACTAC 60.109 55.000 0.00 0.00 38.69 2.73
965 1018 1.517913 GCCGTTGCCGACTACTACC 60.518 63.158 0.00 0.00 35.63 3.18
966 1019 1.885157 CCGTTGCCGACTACTACCA 59.115 57.895 0.00 0.00 35.63 3.25
967 1020 0.457337 CCGTTGCCGACTACTACCAC 60.457 60.000 0.00 0.00 35.63 4.16
968 1021 0.524862 CGTTGCCGACTACTACCACT 59.475 55.000 0.00 0.00 35.63 4.00
969 1022 1.739466 CGTTGCCGACTACTACCACTA 59.261 52.381 0.00 0.00 35.63 2.74
970 1023 2.476854 CGTTGCCGACTACTACCACTAC 60.477 54.545 0.00 0.00 35.63 2.73
971 1024 2.751806 GTTGCCGACTACTACCACTACT 59.248 50.000 0.00 0.00 0.00 2.57
972 1025 2.636830 TGCCGACTACTACCACTACTC 58.363 52.381 0.00 0.00 0.00 2.59
973 1026 1.946081 GCCGACTACTACCACTACTCC 59.054 57.143 0.00 0.00 0.00 3.85
974 1027 2.421248 GCCGACTACTACCACTACTCCT 60.421 54.545 0.00 0.00 0.00 3.69
975 1028 3.465871 CCGACTACTACCACTACTCCTC 58.534 54.545 0.00 0.00 0.00 3.71
976 1029 3.118482 CCGACTACTACCACTACTCCTCA 60.118 52.174 0.00 0.00 0.00 3.86
977 1030 4.511527 CGACTACTACCACTACTCCTCAA 58.488 47.826 0.00 0.00 0.00 3.02
978 1031 4.940046 CGACTACTACCACTACTCCTCAAA 59.060 45.833 0.00 0.00 0.00 2.69
979 1032 5.413833 CGACTACTACCACTACTCCTCAAAA 59.586 44.000 0.00 0.00 0.00 2.44
980 1033 6.072286 CGACTACTACCACTACTCCTCAAAAA 60.072 42.308 0.00 0.00 0.00 1.94
1032 1086 4.729918 CCAGTGCCCCTGCCTGAC 62.730 72.222 0.00 0.00 40.06 3.51
1048 1102 1.525077 GACCAAGGCACCACGACAA 60.525 57.895 0.00 0.00 0.00 3.18
1056 1110 1.954146 CACCACGACAACGACCCAG 60.954 63.158 0.00 0.00 42.66 4.45
1063 1117 0.602905 GACAACGACCCAGACCCAAG 60.603 60.000 0.00 0.00 0.00 3.61
1070 1124 2.360852 CCAGACCCAAGCAGGCAG 60.361 66.667 0.00 0.00 35.39 4.85
1071 1125 2.360852 CAGACCCAAGCAGGCAGG 60.361 66.667 0.00 0.00 35.39 4.85
1072 1126 4.357279 AGACCCAAGCAGGCAGGC 62.357 66.667 0.00 0.00 35.39 4.85
1073 1127 4.666253 GACCCAAGCAGGCAGGCA 62.666 66.667 0.00 0.00 35.83 4.75
1074 1128 4.982701 ACCCAAGCAGGCAGGCAC 62.983 66.667 0.00 0.00 35.83 5.01
1092 1146 3.050275 GCGCGAGGAAAAGCCAGT 61.050 61.111 12.10 0.00 40.02 4.00
1317 1383 0.250513 ATCCACAAGCTCTTCGACCC 59.749 55.000 0.00 0.00 0.00 4.46
1319 1385 1.738099 CACAAGCTCTTCGACCCGG 60.738 63.158 0.00 0.00 0.00 5.73
1594 1660 4.459089 GCCAGCTCCCACGACCTC 62.459 72.222 0.00 0.00 0.00 3.85
1700 1766 1.839747 AAGGTCTACGTGGTGGGCA 60.840 57.895 0.00 0.00 0.00 5.36
1838 1904 0.687757 CAAGGGGGAGGACTCGATGA 60.688 60.000 0.00 0.00 0.00 2.92
1839 1905 0.688087 AAGGGGGAGGACTCGATGAC 60.688 60.000 0.00 0.00 0.00 3.06
1840 1906 2.491022 GGGGGAGGACTCGATGACG 61.491 68.421 0.00 0.00 41.26 4.35
2098 2167 0.459237 AGAAGCTCGAATCTGTGCCG 60.459 55.000 0.00 0.00 0.00 5.69
2130 2199 2.104170 AGATCTCGAGGAAACTGGGTC 58.896 52.381 13.56 0.00 44.43 4.46
2132 2201 1.257743 TCTCGAGGAAACTGGGTCTG 58.742 55.000 13.56 0.00 44.43 3.51
2142 2211 0.398318 ACTGGGTCTGCTTTGGACTC 59.602 55.000 0.00 0.00 34.98 3.36
2143 2212 0.671781 CTGGGTCTGCTTTGGACTCG 60.672 60.000 0.00 0.00 37.02 4.18
2144 2213 1.118965 TGGGTCTGCTTTGGACTCGA 61.119 55.000 0.00 0.00 37.02 4.04
2145 2214 0.670854 GGGTCTGCTTTGGACTCGAC 60.671 60.000 0.00 0.00 34.47 4.20
2146 2215 0.670854 GGTCTGCTTTGGACTCGACC 60.671 60.000 0.00 0.00 34.79 4.79
2149 2218 1.294659 CTGCTTTGGACTCGACCTGC 61.295 60.000 0.00 0.00 0.00 4.85
2150 2219 2.035442 GCTTTGGACTCGACCTGCC 61.035 63.158 0.00 0.00 0.00 4.85
2151 2220 1.376037 CTTTGGACTCGACCTGCCC 60.376 63.158 0.00 0.00 0.00 5.36
2152 2221 2.804828 CTTTGGACTCGACCTGCCCC 62.805 65.000 0.00 0.00 0.00 5.80
2155 2224 4.436998 GACTCGACCTGCCCCGTG 62.437 72.222 0.00 0.00 0.00 4.94
2173 2242 3.168773 GCCCATGGCTTAGTTTCGA 57.831 52.632 6.09 0.00 46.69 3.71
2174 2243 1.459450 GCCCATGGCTTAGTTTCGAA 58.541 50.000 6.09 0.00 46.69 3.71
2178 2247 3.254657 CCCATGGCTTAGTTTCGAAAACA 59.745 43.478 13.10 5.74 0.00 2.83
2179 2248 4.475944 CCATGGCTTAGTTTCGAAAACAG 58.524 43.478 13.10 9.70 0.00 3.16
2184 2253 3.852205 GCTTAGTTTCGAAAACAGGGTGC 60.852 47.826 13.10 7.32 0.00 5.01
2186 2255 0.317519 GTTTCGAAAACAGGGTGCGG 60.318 55.000 13.10 0.00 0.00 5.69
2209 2278 2.106332 GTCCCCGTACTGCCGATG 59.894 66.667 0.00 0.00 0.00 3.84
2214 2283 1.275291 CCCCGTACTGCCGATGATAAT 59.725 52.381 0.00 0.00 0.00 1.28
2216 2285 3.428999 CCCCGTACTGCCGATGATAATAG 60.429 52.174 0.00 0.00 0.00 1.73
2217 2286 3.442625 CCCGTACTGCCGATGATAATAGA 59.557 47.826 0.00 0.00 0.00 1.98
2219 2288 5.037385 CCGTACTGCCGATGATAATAGATG 58.963 45.833 0.00 0.00 0.00 2.90
2220 2289 5.393135 CCGTACTGCCGATGATAATAGATGT 60.393 44.000 0.00 0.00 0.00 3.06
2221 2290 6.093404 CGTACTGCCGATGATAATAGATGTT 58.907 40.000 0.00 0.00 0.00 2.71
2222 2291 6.586463 CGTACTGCCGATGATAATAGATGTTT 59.414 38.462 0.00 0.00 0.00 2.83
2223 2292 7.116376 CGTACTGCCGATGATAATAGATGTTTT 59.884 37.037 0.00 0.00 0.00 2.43
2224 2293 7.807977 ACTGCCGATGATAATAGATGTTTTT 57.192 32.000 0.00 0.00 0.00 1.94
2293 2398 9.547753 TGCTATCTATGAAGGTTTCAAATCTAC 57.452 33.333 0.00 0.00 43.95 2.59
2297 2402 7.565680 TCTATGAAGGTTTCAAATCTACTCCC 58.434 38.462 0.00 0.00 43.95 4.30
2299 2404 5.805728 TGAAGGTTTCAAATCTACTCCCTC 58.194 41.667 0.00 0.00 36.59 4.30
2301 2406 3.197983 AGGTTTCAAATCTACTCCCTCCG 59.802 47.826 0.00 0.00 0.00 4.63
2302 2407 3.055312 GGTTTCAAATCTACTCCCTCCGT 60.055 47.826 0.00 0.00 0.00 4.69
2303 2408 4.565028 GGTTTCAAATCTACTCCCTCCGTT 60.565 45.833 0.00 0.00 0.00 4.44
2304 2409 3.887621 TCAAATCTACTCCCTCCGTTG 57.112 47.619 0.00 0.00 0.00 4.10
2305 2410 3.170717 TCAAATCTACTCCCTCCGTTGT 58.829 45.455 0.00 0.00 0.00 3.32
2306 2411 3.581332 TCAAATCTACTCCCTCCGTTGTT 59.419 43.478 0.00 0.00 0.00 2.83
2307 2412 3.889520 AATCTACTCCCTCCGTTGTTC 57.110 47.619 0.00 0.00 0.00 3.18
2308 2413 2.297698 TCTACTCCCTCCGTTGTTCA 57.702 50.000 0.00 0.00 0.00 3.18
2309 2414 2.600790 TCTACTCCCTCCGTTGTTCAA 58.399 47.619 0.00 0.00 0.00 2.69
2310 2415 2.967201 TCTACTCCCTCCGTTGTTCAAA 59.033 45.455 0.00 0.00 0.00 2.69
2311 2416 2.256117 ACTCCCTCCGTTGTTCAAAG 57.744 50.000 0.00 0.00 0.00 2.77
2312 2417 1.766496 ACTCCCTCCGTTGTTCAAAGA 59.234 47.619 0.52 0.00 0.00 2.52
2313 2418 2.224305 ACTCCCTCCGTTGTTCAAAGAG 60.224 50.000 0.52 4.14 0.00 2.85
2314 2419 1.766496 TCCCTCCGTTGTTCAAAGAGT 59.234 47.619 10.70 0.00 0.00 3.24
2315 2420 1.873591 CCCTCCGTTGTTCAAAGAGTG 59.126 52.381 10.70 0.30 0.00 3.51
2316 2421 2.561569 CCTCCGTTGTTCAAAGAGTGT 58.438 47.619 10.70 0.00 0.00 3.55
2317 2422 3.493699 CCCTCCGTTGTTCAAAGAGTGTA 60.494 47.826 10.70 0.00 0.00 2.90
2318 2423 3.493503 CCTCCGTTGTTCAAAGAGTGTAC 59.506 47.826 10.70 0.00 0.00 2.90
2319 2424 4.369182 CTCCGTTGTTCAAAGAGTGTACT 58.631 43.478 0.00 0.00 0.00 2.73
2320 2425 4.761975 TCCGTTGTTCAAAGAGTGTACTT 58.238 39.130 0.00 0.00 0.00 2.24
2321 2426 4.807304 TCCGTTGTTCAAAGAGTGTACTTC 59.193 41.667 0.00 0.00 0.00 3.01
2322 2427 4.025145 CCGTTGTTCAAAGAGTGTACTTCC 60.025 45.833 0.00 0.00 0.00 3.46
2323 2428 4.569162 CGTTGTTCAAAGAGTGTACTTCCA 59.431 41.667 0.00 0.00 0.00 3.53
2324 2429 5.064198 CGTTGTTCAAAGAGTGTACTTCCAA 59.936 40.000 0.00 0.00 0.00 3.53
2325 2430 6.255950 GTTGTTCAAAGAGTGTACTTCCAAC 58.744 40.000 0.00 0.00 0.00 3.77
2326 2431 5.741011 TGTTCAAAGAGTGTACTTCCAACT 58.259 37.500 0.00 0.00 0.00 3.16
2327 2432 6.177610 TGTTCAAAGAGTGTACTTCCAACTT 58.822 36.000 0.00 0.00 0.00 2.66
2328 2433 6.657541 TGTTCAAAGAGTGTACTTCCAACTTT 59.342 34.615 0.00 0.00 0.00 2.66
2329 2434 6.677781 TCAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 39.53 2.77
2330 2435 6.177610 TCAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 16.23 0.00 39.38 2.83
2331 2436 6.657541 TCAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 16.23 0.00 39.38 2.83
2332 2437 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
2333 2438 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
2334 2439 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
2342 2447 5.730296 TCCAACTTTGTTGGAAAGTCAAA 57.270 34.783 24.52 4.81 44.90 2.69
2343 2448 5.474825 TCCAACTTTGTTGGAAAGTCAAAC 58.525 37.500 24.52 0.00 44.90 2.93
2344 2449 5.011125 TCCAACTTTGTTGGAAAGTCAAACA 59.989 36.000 24.52 3.56 44.90 2.83
2345 2450 5.874261 CCAACTTTGTTGGAAAGTCAAACAT 59.126 36.000 21.06 0.00 42.06 2.71
2346 2451 6.371271 CCAACTTTGTTGGAAAGTCAAACATT 59.629 34.615 21.06 0.00 42.06 2.71
2347 2452 7.094848 CCAACTTTGTTGGAAAGTCAAACATTT 60.095 33.333 21.06 0.00 42.06 2.32
2348 2453 7.977789 ACTTTGTTGGAAAGTCAAACATTTT 57.022 28.000 0.00 0.00 35.76 1.82
2349 2454 9.495572 AACTTTGTTGGAAAGTCAAACATTTTA 57.504 25.926 0.00 0.00 39.36 1.52
2350 2455 9.495572 ACTTTGTTGGAAAGTCAAACATTTTAA 57.504 25.926 0.00 0.00 35.76 1.52
2468 2573 9.874205 CCTATTTGGTTTCACAAACATTGATAT 57.126 29.630 1.78 0.00 42.51 1.63
2479 2584 9.702494 TCACAAACATTGATATATTTTTGCACA 57.298 25.926 0.00 0.00 0.00 4.57
2485 2590 9.926158 ACATTGATATATTTTTGCACAAACTCA 57.074 25.926 0.00 0.00 0.00 3.41
2493 2598 7.614124 ATTTTTGCACAAACTCAATCAAACT 57.386 28.000 0.00 0.00 0.00 2.66
2494 2599 7.432350 TTTTTGCACAAACTCAATCAAACTT 57.568 28.000 0.00 0.00 0.00 2.66
2495 2600 7.432350 TTTTGCACAAACTCAATCAAACTTT 57.568 28.000 0.00 0.00 0.00 2.66
2496 2601 8.539770 TTTTGCACAAACTCAATCAAACTTTA 57.460 26.923 0.00 0.00 0.00 1.85
2497 2602 8.539770 TTTGCACAAACTCAATCAAACTTTAA 57.460 26.923 0.00 0.00 0.00 1.52
2498 2603 8.539770 TTGCACAAACTCAATCAAACTTTAAA 57.460 26.923 0.00 0.00 0.00 1.52
2499 2604 8.539770 TGCACAAACTCAATCAAACTTTAAAA 57.460 26.923 0.00 0.00 0.00 1.52
2500 2605 9.160496 TGCACAAACTCAATCAAACTTTAAAAT 57.840 25.926 0.00 0.00 0.00 1.82
2523 2628 9.942850 AAATAATTTATCCCTCCAACAAAGTTG 57.057 29.630 3.00 3.00 0.00 3.16
2524 2629 6.358974 AATTTATCCCTCCAACAAAGTTGG 57.641 37.500 20.09 20.09 40.87 3.77
2525 2630 4.733077 TTATCCCTCCAACAAAGTTGGA 57.267 40.909 25.17 25.17 45.61 3.53
2526 2631 3.611025 ATCCCTCCAACAAAGTTGGAA 57.389 42.857 26.25 15.84 46.85 3.53
2527 2632 2.944129 TCCCTCCAACAAAGTTGGAAG 58.056 47.619 26.25 21.51 46.85 3.46
2528 2633 2.243736 TCCCTCCAACAAAGTTGGAAGT 59.756 45.455 26.25 0.00 46.85 3.01
2529 2634 3.460340 TCCCTCCAACAAAGTTGGAAGTA 59.540 43.478 26.25 14.68 46.85 2.24
2530 2635 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
2531 2636 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
2532 2637 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
2533 2638 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
2534 2639 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
2535 2640 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
2536 2641 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
2537 2642 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
2538 2643 7.066525 CCAACAAAGTTGGAAGTACACTCTTTA 59.933 37.037 21.24 0.00 42.06 1.85
2539 2644 8.455682 CAACAAAGTTGGAAGTACACTCTTTAA 58.544 33.333 2.05 0.00 0.00 1.52
2540 2645 8.570068 ACAAAGTTGGAAGTACACTCTTTAAA 57.430 30.769 0.00 0.00 0.00 1.52
2541 2646 8.674607 ACAAAGTTGGAAGTACACTCTTTAAAG 58.325 33.333 9.04 9.04 0.00 1.85
2542 2647 7.803279 AAGTTGGAAGTACACTCTTTAAAGG 57.197 36.000 15.13 8.48 0.00 3.11
2543 2648 7.133133 AGTTGGAAGTACACTCTTTAAAGGA 57.867 36.000 15.13 1.82 0.00 3.36
2544 2649 6.990939 AGTTGGAAGTACACTCTTTAAAGGAC 59.009 38.462 15.13 6.27 0.00 3.85
2545 2650 6.488769 TGGAAGTACACTCTTTAAAGGACA 57.511 37.500 15.13 0.00 0.00 4.02
2546 2651 6.522054 TGGAAGTACACTCTTTAAAGGACAG 58.478 40.000 15.13 7.96 0.00 3.51
2547 2652 6.325545 TGGAAGTACACTCTTTAAAGGACAGA 59.674 38.462 15.13 0.00 0.00 3.41
2548 2653 6.869388 GGAAGTACACTCTTTAAAGGACAGAG 59.131 42.308 15.13 7.40 40.08 3.35
2549 2654 6.347859 AGTACACTCTTTAAAGGACAGAGG 57.652 41.667 15.13 6.39 38.76 3.69
2550 2655 4.625607 ACACTCTTTAAAGGACAGAGGG 57.374 45.455 15.13 8.44 42.86 4.30
2551 2656 4.232091 ACACTCTTTAAAGGACAGAGGGA 58.768 43.478 15.13 0.00 40.07 4.20
2552 2657 4.284746 ACACTCTTTAAAGGACAGAGGGAG 59.715 45.833 15.13 4.81 40.07 4.30
2553 2658 4.284746 CACTCTTTAAAGGACAGAGGGAGT 59.715 45.833 15.13 5.41 40.07 3.85
2554 2659 5.480772 CACTCTTTAAAGGACAGAGGGAGTA 59.519 44.000 15.13 0.00 40.07 2.59
2555 2660 5.481122 ACTCTTTAAAGGACAGAGGGAGTAC 59.519 44.000 15.13 0.00 38.76 2.73
2556 2661 5.652324 TCTTTAAAGGACAGAGGGAGTACT 58.348 41.667 15.13 0.00 0.00 2.73
2557 2662 6.797707 TCTTTAAAGGACAGAGGGAGTACTA 58.202 40.000 15.13 0.00 27.75 1.82
2558 2663 6.890814 TCTTTAAAGGACAGAGGGAGTACTAG 59.109 42.308 15.13 0.00 27.75 2.57
2559 2664 3.673543 AAGGACAGAGGGAGTACTAGG 57.326 52.381 0.00 0.00 27.75 3.02
2649 2754 1.005332 TCCGGATTTGCCATTTCTCCA 59.995 47.619 0.00 0.00 35.94 3.86
2708 2813 3.181500 GGATTAACGCGAGCCAAAGATTT 60.181 43.478 15.93 0.00 0.00 2.17
2757 2862 3.088194 TGGTTTTAGCGAGCGGTATAG 57.912 47.619 2.47 0.00 0.00 1.31
2758 2863 2.428171 TGGTTTTAGCGAGCGGTATAGT 59.572 45.455 2.47 0.00 0.00 2.12
2759 2864 3.119029 TGGTTTTAGCGAGCGGTATAGTT 60.119 43.478 2.47 0.00 0.00 2.24
2760 2865 4.097741 TGGTTTTAGCGAGCGGTATAGTTA 59.902 41.667 2.47 0.00 0.00 2.24
2761 2866 5.043248 GGTTTTAGCGAGCGGTATAGTTAA 58.957 41.667 2.47 0.00 0.00 2.01
2763 2868 6.201615 GGTTTTAGCGAGCGGTATAGTTAAAT 59.798 38.462 2.47 0.00 0.00 1.40
2765 2870 4.850347 AGCGAGCGGTATAGTTAAATCT 57.150 40.909 0.00 0.00 0.00 2.40
2766 2871 5.197682 AGCGAGCGGTATAGTTAAATCTT 57.802 39.130 0.00 0.00 0.00 2.40
2767 2872 6.323203 AGCGAGCGGTATAGTTAAATCTTA 57.677 37.500 0.00 0.00 0.00 2.10
2770 2875 7.541437 AGCGAGCGGTATAGTTAAATCTTAATC 59.459 37.037 0.00 0.00 0.00 1.75
2771 2876 7.327761 GCGAGCGGTATAGTTAAATCTTAATCA 59.672 37.037 0.00 0.00 0.00 2.57
2772 2877 8.636843 CGAGCGGTATAGTTAAATCTTAATCAC 58.363 37.037 0.00 0.00 0.00 3.06
2773 2878 9.694137 GAGCGGTATAGTTAAATCTTAATCACT 57.306 33.333 0.00 0.00 0.00 3.41
2802 2907 7.908193 AACCGATGAATTAATTATTTGACGC 57.092 32.000 0.00 0.00 0.00 5.19
2803 2908 7.022055 ACCGATGAATTAATTATTTGACGCA 57.978 32.000 0.00 0.00 0.00 5.24
2804 2909 7.648142 ACCGATGAATTAATTATTTGACGCAT 58.352 30.769 0.00 0.00 0.00 4.73
2805 2910 7.803189 ACCGATGAATTAATTATTTGACGCATC 59.197 33.333 0.00 6.45 0.00 3.91
2837 3086 8.607441 TTGATTATGTGGCATCTATGTTACTC 57.393 34.615 0.00 0.00 0.00 2.59
2838 3087 7.966812 TGATTATGTGGCATCTATGTTACTCT 58.033 34.615 0.00 0.00 0.00 3.24
2839 3088 8.090831 TGATTATGTGGCATCTATGTTACTCTC 58.909 37.037 0.00 0.00 0.00 3.20
2840 3089 7.603180 TTATGTGGCATCTATGTTACTCTCT 57.397 36.000 0.00 0.00 0.00 3.10
2841 3090 8.706322 TTATGTGGCATCTATGTTACTCTCTA 57.294 34.615 0.00 0.00 0.00 2.43
2842 3091 7.603180 ATGTGGCATCTATGTTACTCTCTAA 57.397 36.000 0.00 0.00 0.00 2.10
2843 3092 7.043961 TGTGGCATCTATGTTACTCTCTAAG 57.956 40.000 0.00 0.00 0.00 2.18
2844 3093 6.607600 TGTGGCATCTATGTTACTCTCTAAGT 59.392 38.462 0.00 0.00 42.33 2.24
2845 3094 7.124298 TGTGGCATCTATGTTACTCTCTAAGTT 59.876 37.037 0.00 0.00 39.55 2.66
2847 3096 8.630917 TGGCATCTATGTTACTCTCTAAGTTAC 58.369 37.037 0.00 0.00 39.55 2.50
2848 3097 8.852135 GGCATCTATGTTACTCTCTAAGTTACT 58.148 37.037 0.00 0.00 38.16 2.24
2852 3101 9.970553 TCTATGTTACTCTCTAAGTTACTTCCA 57.029 33.333 0.00 0.00 38.16 3.53
2854 3103 8.653036 ATGTTACTCTCTAAGTTACTTCCACT 57.347 34.615 0.00 0.00 38.16 4.00
2855 3104 9.750783 ATGTTACTCTCTAAGTTACTTCCACTA 57.249 33.333 0.00 0.00 38.16 2.74
2856 3105 9.750783 TGTTACTCTCTAAGTTACTTCCACTAT 57.249 33.333 0.00 0.00 38.16 2.12
2859 3108 8.283699 ACTCTCTAAGTTACTTCCACTATGAC 57.716 38.462 0.00 0.00 33.03 3.06
2860 3109 7.339976 ACTCTCTAAGTTACTTCCACTATGACC 59.660 40.741 0.00 0.00 33.03 4.02
2861 3110 7.179966 TCTCTAAGTTACTTCCACTATGACCA 58.820 38.462 0.00 0.00 0.00 4.02
2862 3111 7.339721 TCTCTAAGTTACTTCCACTATGACCAG 59.660 40.741 0.00 0.00 0.00 4.00
2863 3112 4.473477 AGTTACTTCCACTATGACCAGC 57.527 45.455 0.00 0.00 0.00 4.85
2864 3113 3.197983 AGTTACTTCCACTATGACCAGCC 59.802 47.826 0.00 0.00 0.00 4.85
2865 3114 1.958288 ACTTCCACTATGACCAGCCT 58.042 50.000 0.00 0.00 0.00 4.58
2866 3115 2.269940 ACTTCCACTATGACCAGCCTT 58.730 47.619 0.00 0.00 0.00 4.35
2868 3117 3.452627 ACTTCCACTATGACCAGCCTTAG 59.547 47.826 0.00 0.00 0.00 2.18
2869 3118 1.762957 TCCACTATGACCAGCCTTAGC 59.237 52.381 0.00 0.00 40.32 3.09
2870 3119 1.202698 CCACTATGACCAGCCTTAGCC 60.203 57.143 0.00 0.00 41.25 3.93
2871 3120 1.486310 CACTATGACCAGCCTTAGCCA 59.514 52.381 0.00 0.00 41.25 4.75
2872 3121 1.486726 ACTATGACCAGCCTTAGCCAC 59.513 52.381 0.00 0.00 41.25 5.01
2874 3123 1.553690 ATGACCAGCCTTAGCCACGT 61.554 55.000 0.00 0.00 41.25 4.49
2910 3177 0.544595 AGAGTAGTCCCCGCCTTTGT 60.545 55.000 0.00 0.00 0.00 2.83
2912 3179 0.834687 AGTAGTCCCCGCCTTTGTCA 60.835 55.000 0.00 0.00 0.00 3.58
2913 3180 0.035739 GTAGTCCCCGCCTTTGTCAA 59.964 55.000 0.00 0.00 0.00 3.18
2921 3188 2.159338 CCCGCCTTTGTCAATGAATGAG 60.159 50.000 0.12 0.00 39.19 2.90
2928 3195 6.395629 CCTTTGTCAATGAATGAGCTTCAAT 58.604 36.000 0.00 0.00 46.62 2.57
2929 3196 6.310467 CCTTTGTCAATGAATGAGCTTCAATG 59.690 38.462 0.00 0.00 46.62 2.82
2951 4785 4.523558 TGTTCATGCATCTGTTTTCATGGA 59.476 37.500 0.00 0.00 37.49 3.41
2985 4819 0.106521 GCAAACAATTGGGTGCACCT 59.893 50.000 33.91 13.42 41.11 4.00
3012 4846 7.946655 TTTATCTCATGAATAGTAACAGCCG 57.053 36.000 0.00 0.00 0.00 5.52
3026 4860 0.179045 CAGCCGAGGTCCCCAAATAG 60.179 60.000 0.00 0.00 0.00 1.73
3062 4896 2.029073 ACCGTGGCAGAACAGTCG 59.971 61.111 0.00 0.00 0.00 4.18
3092 4926 3.455990 ACAATGTTGTTGCATGCAAGA 57.544 38.095 32.64 28.73 38.47 3.02
3124 4958 4.657436 GTGACATCCCTTCACTAGTAGG 57.343 50.000 4.86 4.86 40.30 3.18
3125 4959 3.031736 TGACATCCCTTCACTAGTAGGC 58.968 50.000 6.21 0.00 31.38 3.93
3126 4960 2.365941 GACATCCCTTCACTAGTAGGCC 59.634 54.545 6.21 0.00 31.38 5.19
3127 4961 2.022918 ACATCCCTTCACTAGTAGGCCT 60.023 50.000 11.78 11.78 31.38 5.19
3128 4962 2.160721 TCCCTTCACTAGTAGGCCTG 57.839 55.000 17.99 0.00 31.38 4.85
3129 4963 1.644337 TCCCTTCACTAGTAGGCCTGA 59.356 52.381 17.99 0.00 31.38 3.86
3130 4964 2.035632 CCCTTCACTAGTAGGCCTGAG 58.964 57.143 17.99 12.56 31.38 3.35
3131 4965 2.358300 CCCTTCACTAGTAGGCCTGAGA 60.358 54.545 17.99 0.00 31.38 3.27
3132 4966 3.571590 CCTTCACTAGTAGGCCTGAGAT 58.428 50.000 17.99 0.21 0.00 2.75
3133 4967 3.572255 CCTTCACTAGTAGGCCTGAGATC 59.428 52.174 17.99 0.37 0.00 2.75
3134 4968 3.953542 TCACTAGTAGGCCTGAGATCA 57.046 47.619 17.99 0.00 0.00 2.92
3135 4969 3.826524 TCACTAGTAGGCCTGAGATCAG 58.173 50.000 17.99 6.31 43.40 2.90
3136 4970 3.203263 TCACTAGTAGGCCTGAGATCAGT 59.797 47.826 17.99 6.97 42.27 3.41
3137 4971 3.568007 CACTAGTAGGCCTGAGATCAGTC 59.432 52.174 17.99 0.00 42.27 3.51
3138 4972 2.080654 AGTAGGCCTGAGATCAGTCC 57.919 55.000 17.99 5.47 42.04 3.85
3141 4975 2.907703 GGCCTGAGATCAGTCCTCA 58.092 57.895 8.93 0.00 38.85 3.86
3142 4976 0.463620 GGCCTGAGATCAGTCCTCAC 59.536 60.000 8.93 0.00 38.85 3.51
3143 4977 1.484038 GCCTGAGATCAGTCCTCACT 58.516 55.000 8.93 0.00 42.27 3.41
3144 4978 2.660572 GCCTGAGATCAGTCCTCACTA 58.339 52.381 8.93 0.00 42.27 2.74
3173 5007 2.643933 GCCTCAAGCACTTTTGGATC 57.356 50.000 3.41 0.00 42.97 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.866729 AGTACATCGATATATTGATAGAGCGG 58.133 38.462 14.06 5.03 34.57 5.52
99 100 6.127451 TGTGCTCTCGGATTTGATTAGTTCTA 60.127 38.462 0.00 0.00 0.00 2.10
101 102 4.870426 TGTGCTCTCGGATTTGATTAGTTC 59.130 41.667 0.00 0.00 0.00 3.01
107 108 2.359900 GGTTGTGCTCTCGGATTTGAT 58.640 47.619 0.00 0.00 0.00 2.57
109 110 0.443869 CGGTTGTGCTCTCGGATTTG 59.556 55.000 0.00 0.00 0.00 2.32
110 111 0.320374 TCGGTTGTGCTCTCGGATTT 59.680 50.000 0.00 0.00 0.00 2.17
111 112 0.320374 TTCGGTTGTGCTCTCGGATT 59.680 50.000 0.00 0.00 0.00 3.01
112 113 0.108615 CTTCGGTTGTGCTCTCGGAT 60.109 55.000 0.00 0.00 0.00 4.18
113 114 1.289066 CTTCGGTTGTGCTCTCGGA 59.711 57.895 0.00 0.00 0.00 4.55
114 115 2.383527 GCTTCGGTTGTGCTCTCGG 61.384 63.158 0.00 0.00 0.00 4.63
162 172 0.734889 CGGATGGGTGTTCATCAAGC 59.265 55.000 7.08 0.00 43.82 4.01
212 222 1.172180 TGCCCAAAGAAGGTCTTGCG 61.172 55.000 0.00 0.00 36.71 4.85
213 223 0.600057 CTGCCCAAAGAAGGTCTTGC 59.400 55.000 0.00 0.00 36.71 4.01
214 224 1.882623 GACTGCCCAAAGAAGGTCTTG 59.117 52.381 0.00 0.00 36.71 3.02
262 272 3.431725 GCCCAAAAGCTCGTCGGG 61.432 66.667 6.17 6.17 40.11 5.14
412 423 2.125326 CGCTATGGACTGGTCGGGA 61.125 63.158 0.00 0.00 0.00 5.14
417 428 4.530857 GCCGCGCTATGGACTGGT 62.531 66.667 5.56 0.00 0.00 4.00
458 469 2.582436 GATCCGGTCGGGCTTGAA 59.418 61.111 9.68 0.00 34.94 2.69
586 600 3.680620 TTCTTGCCCCTCGCCATCG 62.681 63.158 0.00 0.00 36.24 3.84
587 601 2.115291 GTTCTTGCCCCTCGCCATC 61.115 63.158 0.00 0.00 36.24 3.51
588 602 2.044946 GTTCTTGCCCCTCGCCAT 60.045 61.111 0.00 0.00 36.24 4.40
604 633 1.305381 CCCCTCCACTCTTCTCCGT 60.305 63.158 0.00 0.00 0.00 4.69
605 634 1.305381 ACCCCTCCACTCTTCTCCG 60.305 63.158 0.00 0.00 0.00 4.63
654 701 2.137528 TCTGTCGGTTGCACAGGGA 61.138 57.895 1.84 0.00 41.51 4.20
771 820 8.710835 AACGGATTTTTGTTTGTTTTATGTCT 57.289 26.923 0.00 0.00 0.00 3.41
782 832 4.682401 GCGGATGTAAACGGATTTTTGTTT 59.318 37.500 0.00 0.00 41.00 2.83
800 850 4.796231 GACGGTCAGCACGCGGAT 62.796 66.667 12.47 0.00 34.00 4.18
834 885 1.442017 CGGCTGCGTTTGTTTAGGC 60.442 57.895 0.00 0.00 0.00 3.93
843 894 2.034879 CATCCTGTTCGGCTGCGTT 61.035 57.895 0.00 0.00 0.00 4.84
930 982 2.358247 CTTGGAACCACCGACCGG 60.358 66.667 6.94 6.94 42.61 5.28
988 1041 0.714994 TTTTATACACGCGACGGCAC 59.285 50.000 15.93 0.00 39.92 5.01
1031 1085 1.822186 GTTGTCGTGGTGCCTTGGT 60.822 57.895 0.00 0.00 0.00 3.67
1032 1086 2.892334 CGTTGTCGTGGTGCCTTGG 61.892 63.158 0.00 0.00 0.00 3.61
1037 1091 3.343421 GGGTCGTTGTCGTGGTGC 61.343 66.667 0.00 0.00 38.33 5.01
1041 1095 1.663702 GGTCTGGGTCGTTGTCGTG 60.664 63.158 0.00 0.00 38.33 4.35
1048 1102 2.847234 TGCTTGGGTCTGGGTCGT 60.847 61.111 0.00 0.00 0.00 4.34
1056 1110 4.666253 TGCCTGCCTGCTTGGGTC 62.666 66.667 4.48 0.00 36.00 4.46
1070 1124 4.445545 CTTTTCCTCGCGCGTGCC 62.446 66.667 30.98 0.00 38.08 5.01
1072 1126 4.445545 GGCTTTTCCTCGCGCGTG 62.446 66.667 30.98 27.20 0.00 5.34
1073 1127 4.980805 TGGCTTTTCCTCGCGCGT 62.981 61.111 30.98 0.00 35.26 6.01
1074 1128 4.152625 CTGGCTTTTCCTCGCGCG 62.153 66.667 26.76 26.76 35.26 6.86
1075 1129 3.028366 GACTGGCTTTTCCTCGCGC 62.028 63.158 0.00 0.00 35.26 6.86
1076 1130 1.630244 CTGACTGGCTTTTCCTCGCG 61.630 60.000 0.00 0.00 35.26 5.87
1077 1131 0.603975 ACTGACTGGCTTTTCCTCGC 60.604 55.000 0.00 0.00 35.26 5.03
1085 1139 2.206515 CTCGCTCGACTGACTGGCTT 62.207 60.000 0.00 0.00 0.00 4.35
1088 1142 2.202544 GCTCGCTCGACTGACTGG 60.203 66.667 0.00 0.00 0.00 4.00
1092 1146 1.644786 TTGATCGCTCGCTCGACTGA 61.645 55.000 1.16 0.00 41.62 3.41
1282 1348 1.342975 TGGATGATGAGGTCGAAGGGA 60.343 52.381 0.00 0.00 0.00 4.20
2017 2083 0.917259 CGAAGAAATCCGTGAGAGCG 59.083 55.000 0.00 0.00 0.00 5.03
2072 2138 1.830477 AGATTCGAGCTTCTCTTGGCT 59.170 47.619 0.00 0.00 41.88 4.75
2098 2167 1.069204 TCGAGATCTAGGCCATTGCAC 59.931 52.381 5.01 0.00 40.13 4.57
2108 2177 3.292460 ACCCAGTTTCCTCGAGATCTAG 58.708 50.000 15.71 0.00 0.00 2.43
2130 2199 1.294659 GCAGGTCGAGTCCAAAGCAG 61.295 60.000 0.00 0.00 0.00 4.24
2132 2201 2.035442 GGCAGGTCGAGTCCAAAGC 61.035 63.158 0.00 0.00 0.00 3.51
2156 2225 3.254657 TGTTTTCGAAACTAAGCCATGGG 59.745 43.478 15.13 0.00 0.00 4.00
2157 2226 4.475944 CTGTTTTCGAAACTAAGCCATGG 58.524 43.478 10.79 7.63 0.00 3.66
2158 2227 4.475944 CCTGTTTTCGAAACTAAGCCATG 58.524 43.478 10.79 0.00 0.00 3.66
2159 2228 3.506067 CCCTGTTTTCGAAACTAAGCCAT 59.494 43.478 10.79 0.00 0.00 4.40
2160 2229 2.882137 CCCTGTTTTCGAAACTAAGCCA 59.118 45.455 10.79 0.39 0.00 4.75
2161 2230 2.882761 ACCCTGTTTTCGAAACTAAGCC 59.117 45.455 10.79 0.00 0.00 4.35
2162 2231 3.852205 GCACCCTGTTTTCGAAACTAAGC 60.852 47.826 10.79 5.21 0.00 3.09
2163 2232 3.606153 CGCACCCTGTTTTCGAAACTAAG 60.606 47.826 10.79 8.23 0.00 2.18
2164 2233 2.288458 CGCACCCTGTTTTCGAAACTAA 59.712 45.455 10.79 0.00 0.00 2.24
2165 2234 1.868498 CGCACCCTGTTTTCGAAACTA 59.132 47.619 10.79 1.51 0.00 2.24
2166 2235 0.661020 CGCACCCTGTTTTCGAAACT 59.339 50.000 10.79 0.00 0.00 2.66
2167 2236 0.317519 CCGCACCCTGTTTTCGAAAC 60.318 55.000 10.79 6.80 0.00 2.78
2168 2237 2.026522 CCGCACCCTGTTTTCGAAA 58.973 52.632 6.47 6.47 0.00 3.46
2169 2238 2.548295 GCCGCACCCTGTTTTCGAA 61.548 57.895 0.00 0.00 0.00 3.71
2170 2239 2.975799 GCCGCACCCTGTTTTCGA 60.976 61.111 0.00 0.00 0.00 3.71
2171 2240 4.038080 GGCCGCACCCTGTTTTCG 62.038 66.667 0.00 0.00 0.00 3.46
2172 2241 2.420466 CTTGGCCGCACCCTGTTTTC 62.420 60.000 0.00 0.00 37.83 2.29
2173 2242 2.443016 TTGGCCGCACCCTGTTTT 60.443 55.556 0.00 0.00 37.83 2.43
2174 2243 2.912025 CTTGGCCGCACCCTGTTT 60.912 61.111 0.00 0.00 37.83 2.83
2223 2292 5.067153 TCAGTTGCTTGAAATCCTCGAAAAA 59.933 36.000 0.00 0.00 0.00 1.94
2224 2293 4.578516 TCAGTTGCTTGAAATCCTCGAAAA 59.421 37.500 0.00 0.00 0.00 2.29
2225 2294 4.133820 TCAGTTGCTTGAAATCCTCGAAA 58.866 39.130 0.00 0.00 0.00 3.46
2229 2298 7.094634 TGTCTTAATCAGTTGCTTGAAATCCTC 60.095 37.037 0.00 0.00 0.00 3.71
2230 2299 6.716628 TGTCTTAATCAGTTGCTTGAAATCCT 59.283 34.615 0.00 0.00 0.00 3.24
2231 2300 6.913170 TGTCTTAATCAGTTGCTTGAAATCC 58.087 36.000 0.00 0.00 0.00 3.01
2233 2302 7.119699 TCGATGTCTTAATCAGTTGCTTGAAAT 59.880 33.333 0.00 0.00 0.00 2.17
2234 2303 6.426633 TCGATGTCTTAATCAGTTGCTTGAAA 59.573 34.615 0.00 0.00 0.00 2.69
2235 2304 5.931724 TCGATGTCTTAATCAGTTGCTTGAA 59.068 36.000 0.00 0.00 0.00 2.69
2293 2398 2.224305 ACTCTTTGAACAACGGAGGGAG 60.224 50.000 15.45 0.00 0.00 4.30
2295 2400 1.873591 CACTCTTTGAACAACGGAGGG 59.126 52.381 15.45 10.72 0.00 4.30
2296 2401 2.561569 ACACTCTTTGAACAACGGAGG 58.438 47.619 15.45 9.97 0.00 4.30
2297 2402 4.369182 AGTACACTCTTTGAACAACGGAG 58.631 43.478 0.00 11.93 0.00 4.63
2299 2404 4.025145 GGAAGTACACTCTTTGAACAACGG 60.025 45.833 0.00 0.00 0.00 4.44
2301 2406 6.093633 AGTTGGAAGTACACTCTTTGAACAAC 59.906 38.462 0.00 0.00 33.66 3.32
2302 2407 6.177610 AGTTGGAAGTACACTCTTTGAACAA 58.822 36.000 0.00 0.00 0.00 2.83
2303 2408 5.741011 AGTTGGAAGTACACTCTTTGAACA 58.259 37.500 0.00 0.00 0.00 3.18
2304 2409 6.679327 AAGTTGGAAGTACACTCTTTGAAC 57.321 37.500 0.00 0.00 0.00 3.18
2305 2410 6.657541 ACAAAGTTGGAAGTACACTCTTTGAA 59.342 34.615 19.32 4.44 40.69 2.69
2306 2411 6.177610 ACAAAGTTGGAAGTACACTCTTTGA 58.822 36.000 19.32 0.00 40.69 2.69
2307 2412 6.436843 ACAAAGTTGGAAGTACACTCTTTG 57.563 37.500 14.27 14.27 42.09 2.77
2308 2413 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
2309 2414 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
2310 2415 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
2311 2416 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
2312 2417 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
2320 2425 5.011125 TGTTTGACTTTCCAACAAAGTTGGA 59.989 36.000 23.64 23.64 46.08 3.53
2321 2426 5.233988 TGTTTGACTTTCCAACAAAGTTGG 58.766 37.500 20.09 20.09 40.27 3.77
2322 2427 6.966435 ATGTTTGACTTTCCAACAAAGTTG 57.034 33.333 3.00 3.00 40.27 3.16
2323 2428 7.977789 AAATGTTTGACTTTCCAACAAAGTT 57.022 28.000 1.44 0.00 40.27 2.66
2324 2429 7.977789 AAAATGTTTGACTTTCCAACAAAGT 57.022 28.000 0.00 0.00 42.62 2.66
2327 2432 9.442047 ACATTAAAATGTTTGACTTTCCAACAA 57.558 25.926 2.47 0.00 46.95 2.83
2442 2547 9.874205 ATATCAATGTTTGTGAAACCAAATAGG 57.126 29.630 0.00 0.00 40.67 2.57
2453 2558 9.702494 TGTGCAAAAATATATCAATGTTTGTGA 57.298 25.926 0.00 0.00 34.81 3.58
2459 2564 9.926158 TGAGTTTGTGCAAAAATATATCAATGT 57.074 25.926 5.11 0.00 31.33 2.71
2467 2572 9.328845 AGTTTGATTGAGTTTGTGCAAAAATAT 57.671 25.926 5.11 0.00 31.33 1.28
2468 2573 8.715191 AGTTTGATTGAGTTTGTGCAAAAATA 57.285 26.923 5.11 0.00 31.33 1.40
2469 2574 7.614124 AGTTTGATTGAGTTTGTGCAAAAAT 57.386 28.000 5.11 0.00 31.33 1.82
2470 2575 7.432350 AAGTTTGATTGAGTTTGTGCAAAAA 57.568 28.000 0.00 0.00 31.33 1.94
2471 2576 7.432350 AAAGTTTGATTGAGTTTGTGCAAAA 57.568 28.000 0.00 0.00 31.33 2.44
2472 2577 8.539770 TTAAAGTTTGATTGAGTTTGTGCAAA 57.460 26.923 0.00 0.00 0.00 3.68
2473 2578 8.539770 TTTAAAGTTTGATTGAGTTTGTGCAA 57.460 26.923 0.00 0.00 0.00 4.08
2474 2579 8.539770 TTTTAAAGTTTGATTGAGTTTGTGCA 57.460 26.923 0.00 0.00 0.00 4.57
2497 2602 9.942850 CAACTTTGTTGGAGGGATAAATTATTT 57.057 29.630 2.79 0.00 0.00 1.40
2498 2603 8.539544 CCAACTTTGTTGGAGGGATAAATTATT 58.460 33.333 21.06 0.00 42.06 1.40
2499 2604 7.898636 TCCAACTTTGTTGGAGGGATAAATTAT 59.101 33.333 23.38 0.00 43.17 1.28
2500 2605 7.242359 TCCAACTTTGTTGGAGGGATAAATTA 58.758 34.615 23.38 2.44 43.17 1.40
2501 2606 6.081356 TCCAACTTTGTTGGAGGGATAAATT 58.919 36.000 23.38 0.00 43.17 1.82
2502 2607 5.650283 TCCAACTTTGTTGGAGGGATAAAT 58.350 37.500 23.38 0.00 43.17 1.40
2503 2608 5.068215 TCCAACTTTGTTGGAGGGATAAA 57.932 39.130 23.38 4.13 43.17 1.40
2504 2609 4.733077 TCCAACTTTGTTGGAGGGATAA 57.267 40.909 23.38 4.76 43.17 1.75
2511 2616 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
2512 2617 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
2513 2618 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
2514 2619 8.570068 TTAAAGAGTGTACTTCCAACTTTGTT 57.430 30.769 0.00 0.00 31.02 2.83
2515 2620 8.570068 TTTAAAGAGTGTACTTCCAACTTTGT 57.430 30.769 0.00 0.00 31.02 2.83
2516 2621 8.129211 CCTTTAAAGAGTGTACTTCCAACTTTG 58.871 37.037 16.98 0.00 31.02 2.77
2517 2622 8.050930 TCCTTTAAAGAGTGTACTTCCAACTTT 58.949 33.333 16.98 0.00 32.26 2.66
2518 2623 7.498239 GTCCTTTAAAGAGTGTACTTCCAACTT 59.502 37.037 16.98 0.00 0.00 2.66
2519 2624 6.990939 GTCCTTTAAAGAGTGTACTTCCAACT 59.009 38.462 16.98 0.00 0.00 3.16
2520 2625 6.764560 TGTCCTTTAAAGAGTGTACTTCCAAC 59.235 38.462 16.98 0.00 0.00 3.77
2521 2626 6.891388 TGTCCTTTAAAGAGTGTACTTCCAA 58.109 36.000 16.98 0.00 0.00 3.53
2522 2627 6.325545 TCTGTCCTTTAAAGAGTGTACTTCCA 59.674 38.462 16.98 0.00 0.00 3.53
2523 2628 6.756221 TCTGTCCTTTAAAGAGTGTACTTCC 58.244 40.000 16.98 0.00 0.00 3.46
2524 2629 6.869388 CCTCTGTCCTTTAAAGAGTGTACTTC 59.131 42.308 16.98 0.00 36.51 3.01
2525 2630 6.239629 CCCTCTGTCCTTTAAAGAGTGTACTT 60.240 42.308 16.98 0.00 36.51 2.24
2526 2631 5.246429 CCCTCTGTCCTTTAAAGAGTGTACT 59.754 44.000 16.98 0.00 36.51 2.73
2527 2632 5.245526 TCCCTCTGTCCTTTAAAGAGTGTAC 59.754 44.000 16.98 7.11 36.51 2.90
2528 2633 5.399991 TCCCTCTGTCCTTTAAAGAGTGTA 58.600 41.667 16.98 0.00 36.51 2.90
2529 2634 4.232091 TCCCTCTGTCCTTTAAAGAGTGT 58.768 43.478 16.98 0.00 36.51 3.55
2530 2635 4.284746 ACTCCCTCTGTCCTTTAAAGAGTG 59.715 45.833 16.98 7.06 36.51 3.51
2531 2636 4.494591 ACTCCCTCTGTCCTTTAAAGAGT 58.505 43.478 16.98 6.02 36.51 3.24
2532 2637 5.717654 AGTACTCCCTCTGTCCTTTAAAGAG 59.282 44.000 16.98 6.44 37.73 2.85
2533 2638 5.652324 AGTACTCCCTCTGTCCTTTAAAGA 58.348 41.667 16.98 0.24 0.00 2.52
2534 2639 6.097129 CCTAGTACTCCCTCTGTCCTTTAAAG 59.903 46.154 8.32 8.32 0.00 1.85
2535 2640 5.956563 CCTAGTACTCCCTCTGTCCTTTAAA 59.043 44.000 0.00 0.00 0.00 1.52
2536 2641 5.016031 ACCTAGTACTCCCTCTGTCCTTTAA 59.984 44.000 0.00 0.00 0.00 1.52
2537 2642 4.543337 ACCTAGTACTCCCTCTGTCCTTTA 59.457 45.833 0.00 0.00 0.00 1.85
2538 2643 3.337301 ACCTAGTACTCCCTCTGTCCTTT 59.663 47.826 0.00 0.00 0.00 3.11
2539 2644 2.927685 ACCTAGTACTCCCTCTGTCCTT 59.072 50.000 0.00 0.00 0.00 3.36
2540 2645 2.575713 ACCTAGTACTCCCTCTGTCCT 58.424 52.381 0.00 0.00 0.00 3.85
2541 2646 3.459227 ACTACCTAGTACTCCCTCTGTCC 59.541 52.174 0.00 0.00 34.13 4.02
2542 2647 4.776435 ACTACCTAGTACTCCCTCTGTC 57.224 50.000 0.00 0.00 34.13 3.51
2543 2648 9.270707 CTATATACTACCTAGTACTCCCTCTGT 57.729 40.741 0.00 0.00 41.18 3.41
2544 2649 9.491406 TCTATATACTACCTAGTACTCCCTCTG 57.509 40.741 0.00 0.00 41.18 3.35
2545 2650 9.492730 GTCTATATACTACCTAGTACTCCCTCT 57.507 40.741 0.00 0.00 41.18 3.69
2546 2651 8.704668 GGTCTATATACTACCTAGTACTCCCTC 58.295 44.444 0.00 0.00 41.18 4.30
2547 2652 8.189732 TGGTCTATATACTACCTAGTACTCCCT 58.810 40.741 0.00 0.00 41.18 4.20
2548 2653 8.386012 TGGTCTATATACTACCTAGTACTCCC 57.614 42.308 0.00 0.00 41.18 4.30
2552 2657 9.777297 GCCTATGGTCTATATACTACCTAGTAC 57.223 40.741 9.78 0.00 41.18 2.73
2553 2658 9.511404 TGCCTATGGTCTATATACTACCTAGTA 57.489 37.037 9.78 0.00 42.43 1.82
2554 2659 8.403292 TGCCTATGGTCTATATACTACCTAGT 57.597 38.462 9.78 0.00 40.24 2.57
2555 2660 9.869667 AATGCCTATGGTCTATATACTACCTAG 57.130 37.037 9.78 8.67 34.23 3.02
2557 2662 9.203163 GAAATGCCTATGGTCTATATACTACCT 57.797 37.037 9.78 1.42 34.23 3.08
2558 2663 8.978472 TGAAATGCCTATGGTCTATATACTACC 58.022 37.037 3.45 3.45 0.00 3.18
2708 2813 0.747255 GAACTCCCGATAGCAGCAGA 59.253 55.000 0.00 0.00 0.00 4.26
2777 2882 8.613482 TGCGTCAAATAATTAATTCATCGGTTA 58.387 29.630 3.39 0.00 0.00 2.85
2778 2883 7.476667 TGCGTCAAATAATTAATTCATCGGTT 58.523 30.769 3.39 0.00 0.00 4.44
2779 2884 7.022055 TGCGTCAAATAATTAATTCATCGGT 57.978 32.000 3.39 0.00 0.00 4.69
2780 2885 7.802720 TGATGCGTCAAATAATTAATTCATCGG 59.197 33.333 6.04 0.00 31.28 4.18
2815 3064 8.200024 AGAGAGTAACATAGATGCCACATAAT 57.800 34.615 0.00 0.00 0.00 1.28
2819 3068 6.607600 ACTTAGAGAGTAACATAGATGCCACA 59.392 38.462 0.00 0.00 36.65 4.17
2820 3069 7.045126 ACTTAGAGAGTAACATAGATGCCAC 57.955 40.000 0.00 0.00 36.65 5.01
2821 3070 7.661536 AACTTAGAGAGTAACATAGATGCCA 57.338 36.000 0.00 0.00 37.72 4.92
2822 3071 8.852135 AGTAACTTAGAGAGTAACATAGATGCC 58.148 37.037 0.00 0.00 37.72 4.40
2826 3075 9.970553 TGGAAGTAACTTAGAGAGTAACATAGA 57.029 33.333 0.00 0.00 37.72 1.98
2828 3077 9.750783 AGTGGAAGTAACTTAGAGAGTAACATA 57.249 33.333 0.00 0.00 37.72 2.29
2829 3078 8.653036 AGTGGAAGTAACTTAGAGAGTAACAT 57.347 34.615 0.00 0.00 37.72 2.71
2830 3079 9.750783 ATAGTGGAAGTAACTTAGAGAGTAACA 57.249 33.333 0.00 0.00 37.72 2.41
2833 3082 9.393512 GTCATAGTGGAAGTAACTTAGAGAGTA 57.606 37.037 0.00 0.00 37.72 2.59
2834 3083 7.339976 GGTCATAGTGGAAGTAACTTAGAGAGT 59.660 40.741 0.00 0.00 41.47 3.24
2835 3084 7.339721 TGGTCATAGTGGAAGTAACTTAGAGAG 59.660 40.741 0.00 0.00 0.00 3.20
2837 3086 7.406031 TGGTCATAGTGGAAGTAACTTAGAG 57.594 40.000 0.00 0.00 0.00 2.43
2838 3087 6.127423 GCTGGTCATAGTGGAAGTAACTTAGA 60.127 42.308 0.00 0.00 0.00 2.10
2839 3088 6.043411 GCTGGTCATAGTGGAAGTAACTTAG 58.957 44.000 0.00 0.00 0.00 2.18
2840 3089 5.105064 GGCTGGTCATAGTGGAAGTAACTTA 60.105 44.000 0.00 0.00 0.00 2.24
2841 3090 4.323562 GGCTGGTCATAGTGGAAGTAACTT 60.324 45.833 0.00 0.00 0.00 2.66
2842 3091 3.197983 GGCTGGTCATAGTGGAAGTAACT 59.802 47.826 0.00 0.00 0.00 2.24
2843 3092 3.197983 AGGCTGGTCATAGTGGAAGTAAC 59.802 47.826 0.00 0.00 0.00 2.50
2844 3093 3.450904 AGGCTGGTCATAGTGGAAGTAA 58.549 45.455 0.00 0.00 0.00 2.24
2845 3094 3.116096 AGGCTGGTCATAGTGGAAGTA 57.884 47.619 0.00 0.00 0.00 2.24
2847 3096 3.742640 GCTAAGGCTGGTCATAGTGGAAG 60.743 52.174 0.00 0.00 35.22 3.46
2848 3097 2.170607 GCTAAGGCTGGTCATAGTGGAA 59.829 50.000 0.00 0.00 35.22 3.53
2850 3099 1.202698 GGCTAAGGCTGGTCATAGTGG 60.203 57.143 0.00 0.00 38.73 4.00
2852 3101 1.486726 GTGGCTAAGGCTGGTCATAGT 59.513 52.381 0.00 0.00 38.73 2.12
2854 3103 0.464036 CGTGGCTAAGGCTGGTCATA 59.536 55.000 0.00 0.00 38.73 2.15
2855 3104 1.221840 CGTGGCTAAGGCTGGTCAT 59.778 57.895 0.00 0.00 38.73 3.06
2856 3105 0.901114 TACGTGGCTAAGGCTGGTCA 60.901 55.000 0.00 0.00 38.73 4.02
2857 3106 0.464452 ATACGTGGCTAAGGCTGGTC 59.536 55.000 0.00 0.00 38.73 4.02
2859 3108 1.160329 GCATACGTGGCTAAGGCTGG 61.160 60.000 0.00 0.00 38.73 4.85
2860 3109 1.160329 GGCATACGTGGCTAAGGCTG 61.160 60.000 12.79 0.00 46.64 4.85
2861 3110 1.146263 GGCATACGTGGCTAAGGCT 59.854 57.895 12.79 0.00 46.64 4.58
2862 3111 3.732470 GGCATACGTGGCTAAGGC 58.268 61.111 12.79 0.00 46.64 4.35
2870 3119 4.769063 TGGTGGCCGGCATACGTG 62.769 66.667 30.85 0.00 42.24 4.49
2871 3120 4.467084 CTGGTGGCCGGCATACGT 62.467 66.667 30.85 0.00 42.24 3.57
2886 3153 1.457009 GGCGGGGACTACTCTAGCTG 61.457 65.000 0.00 0.00 0.00 4.24
2921 3188 4.106029 ACAGATGCATGAACATTGAAGC 57.894 40.909 2.46 0.00 0.00 3.86
2928 3195 4.523558 TCCATGAAAACAGATGCATGAACA 59.476 37.500 2.46 0.00 40.29 3.18
2929 3196 4.860907 GTCCATGAAAACAGATGCATGAAC 59.139 41.667 2.46 0.00 40.29 3.18
2951 4785 1.956477 GTTTGCATCAGTGGAAGTGGT 59.044 47.619 0.00 0.00 36.99 4.16
2960 4794 2.548493 GCACCCAATTGTTTGCATCAGT 60.548 45.455 18.83 0.00 34.97 3.41
2963 4797 1.799994 GTGCACCCAATTGTTTGCATC 59.200 47.619 25.54 17.95 46.14 3.91
3026 4860 1.541588 GTGAAACACATCAAGGAGGCC 59.458 52.381 0.00 0.00 36.32 5.19
3092 4926 3.110705 AGGGATGTCACTAGCACTTGAT 58.889 45.455 0.00 0.00 0.00 2.57
3127 4961 4.456535 GCTACTAGTGAGGACTGATCTCA 58.543 47.826 5.39 0.00 38.75 3.27
3128 4962 3.818773 GGCTACTAGTGAGGACTGATCTC 59.181 52.174 5.39 0.00 33.21 2.75
3129 4963 3.203263 TGGCTACTAGTGAGGACTGATCT 59.797 47.826 5.39 0.00 33.21 2.75
3130 4964 3.556999 TGGCTACTAGTGAGGACTGATC 58.443 50.000 5.39 0.00 33.21 2.92
3131 4965 3.671740 TGGCTACTAGTGAGGACTGAT 57.328 47.619 5.39 0.00 33.21 2.90
3132 4966 3.671740 ATGGCTACTAGTGAGGACTGA 57.328 47.619 5.39 0.00 33.21 3.41
3133 4967 3.739519 GCAATGGCTACTAGTGAGGACTG 60.740 52.174 5.39 0.00 36.96 3.51
3134 4968 2.432510 GCAATGGCTACTAGTGAGGACT 59.567 50.000 5.39 0.00 36.96 3.85
3135 4969 2.483889 GGCAATGGCTACTAGTGAGGAC 60.484 54.545 5.39 0.00 40.87 3.85
3136 4970 1.762957 GGCAATGGCTACTAGTGAGGA 59.237 52.381 5.39 0.00 40.87 3.71
3137 4971 1.765314 AGGCAATGGCTACTAGTGAGG 59.235 52.381 7.81 0.00 40.87 3.86
3138 4972 2.432146 TGAGGCAATGGCTACTAGTGAG 59.568 50.000 9.97 0.43 38.98 3.51
3139 4973 2.466846 TGAGGCAATGGCTACTAGTGA 58.533 47.619 9.97 0.00 38.98 3.41
3140 4974 2.988010 TGAGGCAATGGCTACTAGTG 57.012 50.000 9.97 0.00 38.98 2.74
3141 4975 2.420687 GCTTGAGGCAATGGCTACTAGT 60.421 50.000 9.97 0.00 38.98 2.57
3142 4976 2.216898 GCTTGAGGCAATGGCTACTAG 58.783 52.381 9.97 10.57 38.98 2.57
3143 4977 2.332063 GCTTGAGGCAATGGCTACTA 57.668 50.000 9.97 0.00 38.98 1.82
3144 4978 3.181526 GCTTGAGGCAATGGCTACT 57.818 52.632 9.97 0.00 38.98 2.57
3167 5001 3.843619 TGTCCAGGACATAACTGATCCAA 59.156 43.478 19.21 0.00 37.67 3.53
3173 5007 4.692625 CAGTTTCTGTCCAGGACATAACTG 59.307 45.833 35.29 35.29 46.01 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.