Multiple sequence alignment - TraesCS1D01G333400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G333400 chr1D 100.000 3172 0 0 1 3172 423645194 423648365 0.000000e+00 5858.0
1 TraesCS1D01G333400 chr1D 73.745 518 109 23 1597 2092 423854598 423855110 9.040000e-41 178.0
2 TraesCS1D01G333400 chr1D 72.473 465 98 20 1008 1456 423830180 423830630 4.300000e-24 122.0
3 TraesCS1D01G333400 chr1A 91.149 1898 138 15 520 2413 519843453 519845324 0.000000e+00 2547.0
4 TraesCS1D01G333400 chr1A 76.349 1501 265 61 618 2077 519848996 519850447 0.000000e+00 723.0
5 TraesCS1D01G333400 chr1A 74.717 1503 290 60 655 2110 519852613 519854072 3.520000e-164 588.0
6 TraesCS1D01G333400 chr1A 81.538 455 75 2 1010 1461 520009626 520009178 1.800000e-97 366.0
7 TraesCS1D01G333400 chr1A 82.308 390 41 10 2406 2787 519845888 519846257 2.380000e-81 313.0
8 TraesCS1D01G333400 chr1A 92.056 214 15 2 307 520 519820560 519820771 1.850000e-77 300.0
9 TraesCS1D01G333400 chr1A 86.702 188 12 6 2856 3030 519846280 519846467 2.500000e-46 196.0
10 TraesCS1D01G333400 chr1A 81.022 137 23 2 1556 1689 520319064 520319200 4.330000e-19 106.0
11 TraesCS1D01G333400 chr1A 79.231 130 27 0 657 786 550424906 550425035 1.210000e-14 91.6
12 TraesCS1D01G333400 chr1A 87.273 55 7 0 1664 1718 575183882 575183828 2.640000e-06 63.9
13 TraesCS1D01G333400 chr1B 87.432 1464 117 27 1403 2854 572945877 572947285 0.000000e+00 1622.0
14 TraesCS1D01G333400 chr1B 89.027 884 91 5 526 1406 572932826 572933706 0.000000e+00 1090.0
15 TraesCS1D01G333400 chr1B 76.767 1429 241 56 689 2077 573041947 573043324 0.000000e+00 715.0
16 TraesCS1D01G333400 chr1B 74.347 1645 322 69 661 2257 573045716 573047308 2.710000e-170 608.0
17 TraesCS1D01G333400 chr1B 83.951 162 14 5 2871 3020 572992372 572992533 9.170000e-31 145.0
18 TraesCS1D01G333400 chr1B 73.497 449 85 22 1289 1718 573366594 573367027 4.270000e-29 139.0
19 TraesCS1D01G333400 chr1B 90.566 53 5 0 1665 1717 372927873 372927821 1.580000e-08 71.3
20 TraesCS1D01G333400 chr1B 75.581 172 27 10 1556 1718 666978613 666978778 1.580000e-08 71.3
21 TraesCS1D01G333400 chr1B 95.000 40 2 0 1295 1334 366709599 366709560 2.640000e-06 63.9
22 TraesCS1D01G333400 chr3D 91.244 217 15 3 81 296 519879919 519880132 3.090000e-75 292.0
23 TraesCS1D01G333400 chr3B 85.473 296 24 8 1 294 9426381 9426103 1.110000e-74 291.0
24 TraesCS1D01G333400 chr7D 90.278 216 19 2 81 296 96077992 96077779 6.700000e-72 281.0
25 TraesCS1D01G333400 chr6D 90.323 217 18 3 81 296 428884958 428885172 6.700000e-72 281.0
26 TraesCS1D01G333400 chr4D 89.450 218 17 5 81 296 101440346 101440133 1.450000e-68 270.0
27 TraesCS1D01G333400 chr5B 88.739 222 21 3 81 301 372162232 372162014 5.220000e-68 268.0
28 TraesCS1D01G333400 chr5B 71.605 324 78 12 1018 1334 243041835 243042151 3.390000e-10 76.8
29 TraesCS1D01G333400 chr2A 83.893 298 28 9 1 296 710650111 710649832 1.880000e-67 267.0
30 TraesCS1D01G333400 chr2D 88.940 217 21 2 81 296 2621683 2621897 6.750000e-67 265.0
31 TraesCS1D01G333400 chr2D 88.940 217 19 4 81 296 449688111 449687899 2.430000e-66 263.0
32 TraesCS1D01G333400 chr5D 74.429 219 50 6 1506 1720 80300643 80300859 4.360000e-14 89.8
33 TraesCS1D01G333400 chr5D 72.136 323 78 10 1018 1334 162586761 162587077 1.570000e-13 87.9
34 TraesCS1D01G333400 chr7A 95.000 40 2 0 1295 1334 393433779 393433818 2.640000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G333400 chr1D 423645194 423648365 3171 False 5858.0 5858 100.000 1 3172 1 chr1D.!!$F1 3171
1 TraesCS1D01G333400 chr1A 519843453 519854072 10619 False 873.4 2547 82.245 520 3030 5 chr1A.!!$F4 2510
2 TraesCS1D01G333400 chr1B 572945877 572947285 1408 False 1622.0 1622 87.432 1403 2854 1 chr1B.!!$F2 1451
3 TraesCS1D01G333400 chr1B 572932826 572933706 880 False 1090.0 1090 89.027 526 1406 1 chr1B.!!$F1 880
4 TraesCS1D01G333400 chr1B 573041947 573047308 5361 False 661.5 715 75.557 661 2257 2 chr1B.!!$F6 1596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 790 0.03467 GCACTGCCCCTCTCAATCTT 60.035 55.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2743 3363 0.607112 TGAGACTGCAGCCAAGAGAG 59.393 55.0 15.27 0.0 0.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.842444 AAATTTTCACGAAAATAACGAACATTG 57.158 25.926 16.03 0.00 46.76 2.82
29 30 8.789881 ATTTTCACGAAAATAACGAACATTGA 57.210 26.923 14.53 0.00 45.93 2.57
30 31 7.597643 TTTCACGAAAATAACGAACATTGAC 57.402 32.000 0.00 0.00 34.70 3.18
31 32 6.533819 TCACGAAAATAACGAACATTGACT 57.466 33.333 0.00 0.00 34.70 3.41
32 33 6.950545 TCACGAAAATAACGAACATTGACTT 58.049 32.000 0.00 0.00 34.70 3.01
33 34 7.067116 TCACGAAAATAACGAACATTGACTTC 58.933 34.615 0.00 0.00 34.70 3.01
34 35 6.848800 CACGAAAATAACGAACATTGACTTCA 59.151 34.615 0.00 0.00 34.70 3.02
35 36 7.058354 CACGAAAATAACGAACATTGACTTCAG 59.942 37.037 0.00 0.00 34.70 3.02
36 37 6.519761 CGAAAATAACGAACATTGACTTCAGG 59.480 38.462 0.00 0.00 0.00 3.86
37 38 5.880054 AATAACGAACATTGACTTCAGGG 57.120 39.130 0.00 0.00 0.00 4.45
38 39 1.523758 ACGAACATTGACTTCAGGGC 58.476 50.000 0.00 0.00 0.00 5.19
39 40 1.202758 ACGAACATTGACTTCAGGGCA 60.203 47.619 0.00 0.00 0.00 5.36
40 41 1.466167 CGAACATTGACTTCAGGGCAG 59.534 52.381 0.00 0.00 32.68 4.85
41 42 2.783135 GAACATTGACTTCAGGGCAGA 58.217 47.619 0.00 0.00 32.68 4.26
42 43 2.957402 ACATTGACTTCAGGGCAGAA 57.043 45.000 0.00 0.00 32.68 3.02
43 44 3.228188 ACATTGACTTCAGGGCAGAAA 57.772 42.857 0.00 0.00 32.68 2.52
44 45 3.565307 ACATTGACTTCAGGGCAGAAAA 58.435 40.909 0.00 0.00 32.68 2.29
45 46 3.571401 ACATTGACTTCAGGGCAGAAAAG 59.429 43.478 0.00 0.00 32.68 2.27
46 47 3.576078 TTGACTTCAGGGCAGAAAAGA 57.424 42.857 0.00 0.00 32.68 2.52
47 48 2.851195 TGACTTCAGGGCAGAAAAGAC 58.149 47.619 0.00 0.00 0.00 3.01
48 49 2.172505 TGACTTCAGGGCAGAAAAGACA 59.827 45.455 0.00 0.00 0.00 3.41
49 50 3.214328 GACTTCAGGGCAGAAAAGACAA 58.786 45.455 0.00 0.00 0.00 3.18
50 51 3.631250 ACTTCAGGGCAGAAAAGACAAA 58.369 40.909 0.00 0.00 0.00 2.83
51 52 4.218312 ACTTCAGGGCAGAAAAGACAAAT 58.782 39.130 0.00 0.00 0.00 2.32
52 53 4.651045 ACTTCAGGGCAGAAAAGACAAATT 59.349 37.500 0.00 0.00 0.00 1.82
53 54 5.129320 ACTTCAGGGCAGAAAAGACAAATTT 59.871 36.000 0.00 0.00 0.00 1.82
54 55 6.323739 ACTTCAGGGCAGAAAAGACAAATTTA 59.676 34.615 0.00 0.00 0.00 1.40
55 56 6.916360 TCAGGGCAGAAAAGACAAATTTAT 57.084 33.333 0.00 0.00 0.00 1.40
56 57 7.301868 TCAGGGCAGAAAAGACAAATTTATT 57.698 32.000 0.00 0.00 0.00 1.40
57 58 7.734942 TCAGGGCAGAAAAGACAAATTTATTT 58.265 30.769 0.00 0.00 0.00 1.40
58 59 8.865090 TCAGGGCAGAAAAGACAAATTTATTTA 58.135 29.630 0.00 0.00 0.00 1.40
59 60 8.925700 CAGGGCAGAAAAGACAAATTTATTTAC 58.074 33.333 0.00 0.00 0.00 2.01
60 61 8.870116 AGGGCAGAAAAGACAAATTTATTTACT 58.130 29.630 0.00 0.00 0.00 2.24
107 108 7.907214 AGGTCACTATTCACACTATTTTGAC 57.093 36.000 0.00 0.00 0.00 3.18
108 109 7.073342 GGTCACTATTCACACTATTTTGACC 57.927 40.000 0.00 0.00 42.64 4.02
109 110 6.183360 GGTCACTATTCACACTATTTTGACCG 60.183 42.308 0.00 0.00 40.70 4.79
110 111 6.588756 GTCACTATTCACACTATTTTGACCGA 59.411 38.462 0.00 0.00 0.00 4.69
111 112 7.117236 GTCACTATTCACACTATTTTGACCGAA 59.883 37.037 0.00 0.00 0.00 4.30
112 113 7.658167 TCACTATTCACACTATTTTGACCGAAA 59.342 33.333 0.00 0.00 0.00 3.46
113 114 8.286800 CACTATTCACACTATTTTGACCGAAAA 58.713 33.333 0.00 0.00 37.93 2.29
114 115 8.842280 ACTATTCACACTATTTTGACCGAAAAA 58.158 29.630 0.00 0.00 37.10 1.94
115 116 9.840427 CTATTCACACTATTTTGACCGAAAAAT 57.160 29.630 8.02 8.02 41.45 1.82
119 120 9.834628 TCACACTATTTTGACCGAAAAATTATC 57.165 29.630 8.17 0.00 39.73 1.75
120 121 9.840427 CACACTATTTTGACCGAAAAATTATCT 57.160 29.630 8.17 0.00 39.73 1.98
192 193 9.256228 TCTCACAAGTATAATAGAAGGTCAAGT 57.744 33.333 0.00 0.00 0.00 3.16
193 194 9.877178 CTCACAAGTATAATAGAAGGTCAAGTT 57.123 33.333 0.00 0.00 0.00 2.66
283 284 4.708576 TGTACATACACCCAGAAACCAA 57.291 40.909 0.00 0.00 0.00 3.67
284 285 5.050126 TGTACATACACCCAGAAACCAAA 57.950 39.130 0.00 0.00 0.00 3.28
285 286 4.822896 TGTACATACACCCAGAAACCAAAC 59.177 41.667 0.00 0.00 0.00 2.93
286 287 2.882137 ACATACACCCAGAAACCAAACG 59.118 45.455 0.00 0.00 0.00 3.60
287 288 2.713863 TACACCCAGAAACCAAACGT 57.286 45.000 0.00 0.00 0.00 3.99
288 289 1.842052 ACACCCAGAAACCAAACGTT 58.158 45.000 0.00 0.00 35.70 3.99
289 290 1.746787 ACACCCAGAAACCAAACGTTC 59.253 47.619 0.00 0.00 31.78 3.95
290 291 1.066454 CACCCAGAAACCAAACGTTCC 59.934 52.381 0.00 0.00 31.78 3.62
291 292 0.671796 CCCAGAAACCAAACGTTCCC 59.328 55.000 0.00 0.00 31.78 3.97
292 293 0.309612 CCAGAAACCAAACGTTCCCG 59.690 55.000 0.00 0.00 40.83 5.14
301 302 3.057337 ACGTTCCCGTCCCTCTTG 58.943 61.111 0.00 0.00 46.28 3.02
302 303 1.532316 ACGTTCCCGTCCCTCTTGA 60.532 57.895 0.00 0.00 46.28 3.02
303 304 1.215647 CGTTCCCGTCCCTCTTGAG 59.784 63.158 0.00 0.00 0.00 3.02
304 305 1.079057 GTTCCCGTCCCTCTTGAGC 60.079 63.158 0.00 0.00 0.00 4.26
305 306 2.646175 TTCCCGTCCCTCTTGAGCG 61.646 63.158 0.00 0.00 0.00 5.03
306 307 4.148825 CCCGTCCCTCTTGAGCGG 62.149 72.222 7.78 7.78 41.82 5.52
307 308 3.068691 CCGTCCCTCTTGAGCGGA 61.069 66.667 8.73 6.56 44.57 5.54
308 309 2.492090 CGTCCCTCTTGAGCGGAG 59.508 66.667 7.70 0.00 0.00 4.63
321 322 4.598257 CGGAGCGGTTGATGTCTT 57.402 55.556 0.00 0.00 0.00 3.01
322 323 2.840974 CGGAGCGGTTGATGTCTTT 58.159 52.632 0.00 0.00 0.00 2.52
323 324 0.443869 CGGAGCGGTTGATGTCTTTG 59.556 55.000 0.00 0.00 0.00 2.77
324 325 0.169009 GGAGCGGTTGATGTCTTTGC 59.831 55.000 0.00 0.00 0.00 3.68
325 326 0.179215 GAGCGGTTGATGTCTTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
326 327 1.797537 GCGGTTGATGTCTTTGCGC 60.798 57.895 0.00 0.00 0.00 6.09
327 328 1.573932 CGGTTGATGTCTTTGCGCA 59.426 52.632 5.66 5.66 0.00 6.09
328 329 0.040514 CGGTTGATGTCTTTGCGCAA 60.041 50.000 21.02 21.02 0.00 4.85
329 330 1.599171 CGGTTGATGTCTTTGCGCAAA 60.599 47.619 31.75 31.75 0.00 3.68
330 331 2.468831 GGTTGATGTCTTTGCGCAAAA 58.531 42.857 32.96 20.98 0.00 2.44
331 332 2.863137 GGTTGATGTCTTTGCGCAAAAA 59.137 40.909 32.96 21.02 0.00 1.94
347 348 2.702847 AAAAAGCTCGTCTTGGCGT 58.297 47.368 0.00 0.00 34.67 5.68
348 349 1.021968 AAAAAGCTCGTCTTGGCGTT 58.978 45.000 0.00 0.00 34.67 4.84
349 350 0.307760 AAAAGCTCGTCTTGGCGTTG 59.692 50.000 0.00 0.00 34.67 4.10
350 351 0.814010 AAAGCTCGTCTTGGCGTTGT 60.814 50.000 0.00 0.00 34.67 3.32
351 352 1.222115 AAGCTCGTCTTGGCGTTGTC 61.222 55.000 0.00 0.00 32.79 3.18
352 353 2.668280 GCTCGTCTTGGCGTTGTCC 61.668 63.158 0.00 0.00 0.00 4.02
353 354 2.355363 TCGTCTTGGCGTTGTCCG 60.355 61.111 0.00 0.00 40.40 4.79
354 355 2.660552 CGTCTTGGCGTTGTCCGT 60.661 61.111 0.00 0.00 39.32 4.69
355 356 2.935955 GTCTTGGCGTTGTCCGTG 59.064 61.111 0.00 0.00 39.32 4.94
356 357 1.593209 GTCTTGGCGTTGTCCGTGA 60.593 57.895 0.00 0.00 39.32 4.35
357 358 1.593209 TCTTGGCGTTGTCCGTGAC 60.593 57.895 0.00 0.00 39.32 3.67
358 359 2.938823 CTTGGCGTTGTCCGTGACG 61.939 63.158 0.00 0.00 41.89 4.35
359 360 3.719883 TTGGCGTTGTCCGTGACGT 62.720 57.895 3.64 0.00 41.10 4.34
360 361 2.963320 GGCGTTGTCCGTGACGTT 60.963 61.111 3.64 0.00 41.10 3.99
361 362 2.527867 GGCGTTGTCCGTGACGTTT 61.528 57.895 3.64 0.00 41.10 3.60
362 363 1.349282 GCGTTGTCCGTGACGTTTT 59.651 52.632 3.64 0.00 41.10 2.43
363 364 0.922111 GCGTTGTCCGTGACGTTTTG 60.922 55.000 3.64 0.00 41.10 2.44
364 365 0.315544 CGTTGTCCGTGACGTTTTGG 60.316 55.000 3.64 0.00 34.95 3.28
365 366 1.008329 GTTGTCCGTGACGTTTTGGA 58.992 50.000 3.64 0.00 34.95 3.53
366 367 1.397692 GTTGTCCGTGACGTTTTGGAA 59.602 47.619 3.64 0.00 34.95 3.53
367 368 1.735386 TGTCCGTGACGTTTTGGAAA 58.265 45.000 3.64 0.00 34.95 3.13
368 369 1.397692 TGTCCGTGACGTTTTGGAAAC 59.602 47.619 3.64 0.00 34.95 2.78
370 371 0.316360 CCGTGACGTTTTGGAAACGG 60.316 55.000 24.18 8.29 46.86 4.44
372 373 4.620437 GACGTTTTGGAAACGGCC 57.380 55.556 24.18 14.55 45.33 6.13
373 374 1.369568 GACGTTTTGGAAACGGCCG 60.370 57.895 26.86 26.86 45.33 6.13
374 375 2.050639 GACGTTTTGGAAACGGCCGT 62.051 55.000 28.70 28.70 45.33 5.68
375 376 1.064458 CGTTTTGGAAACGGCCGTT 59.936 52.632 36.96 36.96 39.73 4.44
376 377 1.203600 CGTTTTGGAAACGGCCGTTG 61.204 55.000 41.70 23.53 39.73 4.10
377 378 1.227002 TTTTGGAAACGGCCGTTGC 60.227 52.632 41.70 39.11 38.47 4.17
378 379 2.938539 TTTTGGAAACGGCCGTTGCG 62.939 55.000 41.70 11.43 38.47 4.85
398 399 2.752091 TCGTCGACGAGAGGAAGAG 58.248 57.895 34.97 4.96 44.22 2.85
399 400 1.061253 CGTCGACGAGAGGAAGAGC 59.939 63.158 33.35 0.00 43.02 4.09
400 401 1.636570 CGTCGACGAGAGGAAGAGCA 61.637 60.000 33.35 0.00 43.02 4.26
401 402 0.179184 GTCGACGAGAGGAAGAGCAC 60.179 60.000 0.00 0.00 0.00 4.40
402 403 1.137825 CGACGAGAGGAAGAGCACC 59.862 63.158 0.00 0.00 0.00 5.01
403 404 1.587043 CGACGAGAGGAAGAGCACCA 61.587 60.000 0.00 0.00 0.00 4.17
404 405 0.109039 GACGAGAGGAAGAGCACCAC 60.109 60.000 0.00 0.00 0.00 4.16
405 406 1.216710 CGAGAGGAAGAGCACCACC 59.783 63.158 0.00 0.00 0.00 4.61
406 407 1.216710 GAGAGGAAGAGCACCACCG 59.783 63.158 0.00 0.00 0.00 4.94
407 408 2.232298 GAGAGGAAGAGCACCACCGG 62.232 65.000 0.00 0.00 0.00 5.28
408 409 2.203788 AGGAAGAGCACCACCGGA 60.204 61.111 9.46 0.00 0.00 5.14
409 410 2.047179 GGAAGAGCACCACCGGAC 60.047 66.667 9.46 0.00 0.00 4.79
410 411 2.432628 GAAGAGCACCACCGGACG 60.433 66.667 9.46 0.00 0.00 4.79
411 412 3.934391 GAAGAGCACCACCGGACGG 62.934 68.421 9.46 11.31 42.03 4.79
416 417 4.388499 CACCACCGGACGGGAAGG 62.388 72.222 9.46 15.20 39.97 3.46
417 418 4.626402 ACCACCGGACGGGAAGGA 62.626 66.667 20.61 0.00 39.97 3.36
418 419 4.078516 CCACCGGACGGGAAGGAC 62.079 72.222 9.46 0.00 39.97 3.85
419 420 4.430765 CACCGGACGGGAAGGACG 62.431 72.222 9.46 0.00 39.97 4.79
424 425 4.368543 GACGGGAAGGACGCCGTT 62.369 66.667 0.00 0.00 42.38 4.44
425 426 2.990967 ACGGGAAGGACGCCGTTA 60.991 61.111 0.00 0.00 40.61 3.18
426 427 2.507769 CGGGAAGGACGCCGTTAC 60.508 66.667 0.00 0.00 0.00 2.50
427 428 2.125391 GGGAAGGACGCCGTTACC 60.125 66.667 0.00 0.00 34.36 2.85
428 429 2.507769 GGAAGGACGCCGTTACCG 60.508 66.667 0.00 0.00 0.00 4.02
438 439 4.584688 CGTTACCGGGGACTGAAC 57.415 61.111 6.32 0.00 36.31 3.18
439 440 1.444895 CGTTACCGGGGACTGAACG 60.445 63.158 6.32 7.94 36.31 3.95
444 445 3.771160 CGGGGACTGAACGGAGGG 61.771 72.222 0.00 0.00 36.31 4.30
445 446 2.284405 GGGGACTGAACGGAGGGA 60.284 66.667 0.00 0.00 0.00 4.20
446 447 2.359967 GGGGACTGAACGGAGGGAG 61.360 68.421 0.00 0.00 0.00 4.30
447 448 1.609794 GGGACTGAACGGAGGGAGT 60.610 63.158 0.00 0.00 0.00 3.85
448 449 0.324091 GGGACTGAACGGAGGGAGTA 60.324 60.000 0.00 0.00 0.00 2.59
449 450 1.553706 GGACTGAACGGAGGGAGTAA 58.446 55.000 0.00 0.00 0.00 2.24
450 451 1.204231 GGACTGAACGGAGGGAGTAAC 59.796 57.143 0.00 0.00 0.00 2.50
451 452 1.891150 GACTGAACGGAGGGAGTAACA 59.109 52.381 0.00 0.00 0.00 2.41
452 453 2.496470 GACTGAACGGAGGGAGTAACAT 59.504 50.000 0.00 0.00 0.00 2.71
453 454 2.904434 ACTGAACGGAGGGAGTAACATT 59.096 45.455 0.00 0.00 0.00 2.71
454 455 3.056035 ACTGAACGGAGGGAGTAACATTC 60.056 47.826 0.00 0.00 0.00 2.67
455 456 3.170717 TGAACGGAGGGAGTAACATTCT 58.829 45.455 0.00 0.00 0.00 2.40
456 457 3.581332 TGAACGGAGGGAGTAACATTCTT 59.419 43.478 0.00 0.00 0.00 2.52
457 458 3.611766 ACGGAGGGAGTAACATTCTTG 57.388 47.619 0.00 0.00 0.00 3.02
458 459 2.236395 ACGGAGGGAGTAACATTCTTGG 59.764 50.000 0.00 0.00 0.00 3.61
459 460 2.236395 CGGAGGGAGTAACATTCTTGGT 59.764 50.000 0.00 0.00 0.00 3.67
460 461 3.307480 CGGAGGGAGTAACATTCTTGGTT 60.307 47.826 0.00 0.00 0.00 3.67
461 462 4.081309 CGGAGGGAGTAACATTCTTGGTTA 60.081 45.833 0.00 0.00 0.00 2.85
462 463 5.396436 CGGAGGGAGTAACATTCTTGGTTAT 60.396 44.000 0.00 0.00 33.68 1.89
463 464 6.183360 CGGAGGGAGTAACATTCTTGGTTATA 60.183 42.308 0.00 0.00 33.68 0.98
464 465 7.472945 CGGAGGGAGTAACATTCTTGGTTATAT 60.473 40.741 0.00 0.00 33.68 0.86
465 466 8.218488 GGAGGGAGTAACATTCTTGGTTATATT 58.782 37.037 0.00 0.00 33.68 1.28
466 467 9.628500 GAGGGAGTAACATTCTTGGTTATATTT 57.372 33.333 0.00 0.00 33.68 1.40
471 472 9.895138 AGTAACATTCTTGGTTATATTTACGGT 57.105 29.630 0.00 0.00 33.68 4.83
472 473 9.925268 GTAACATTCTTGGTTATATTTACGGTG 57.075 33.333 0.00 0.00 33.68 4.94
473 474 8.570068 AACATTCTTGGTTATATTTACGGTGT 57.430 30.769 0.00 0.00 0.00 4.16
474 475 8.570068 ACATTCTTGGTTATATTTACGGTGTT 57.430 30.769 0.00 0.00 0.00 3.32
475 476 9.669887 ACATTCTTGGTTATATTTACGGTGTTA 57.330 29.630 0.00 0.00 0.00 2.41
477 478 9.895138 ATTCTTGGTTATATTTACGGTGTTAGT 57.105 29.630 0.00 0.00 0.00 2.24
478 479 9.723601 TTCTTGGTTATATTTACGGTGTTAGTT 57.276 29.630 0.00 0.00 0.00 2.24
479 480 9.153721 TCTTGGTTATATTTACGGTGTTAGTTG 57.846 33.333 0.00 0.00 0.00 3.16
480 481 9.153721 CTTGGTTATATTTACGGTGTTAGTTGA 57.846 33.333 0.00 0.00 0.00 3.18
481 482 9.499479 TTGGTTATATTTACGGTGTTAGTTGAA 57.501 29.630 0.00 0.00 0.00 2.69
482 483 9.153721 TGGTTATATTTACGGTGTTAGTTGAAG 57.846 33.333 0.00 0.00 0.00 3.02
483 484 8.118607 GGTTATATTTACGGTGTTAGTTGAAGC 58.881 37.037 0.00 0.00 0.00 3.86
484 485 6.673154 ATATTTACGGTGTTAGTTGAAGCC 57.327 37.500 0.00 0.00 0.00 4.35
485 486 3.472283 TTACGGTGTTAGTTGAAGCCA 57.528 42.857 0.00 0.00 0.00 4.75
486 487 1.589803 ACGGTGTTAGTTGAAGCCAC 58.410 50.000 0.00 0.00 0.00 5.01
487 488 1.134340 ACGGTGTTAGTTGAAGCCACA 60.134 47.619 0.00 0.00 0.00 4.17
488 489 1.263217 CGGTGTTAGTTGAAGCCACAC 59.737 52.381 0.00 0.00 37.59 3.82
489 490 1.263217 GGTGTTAGTTGAAGCCACACG 59.737 52.381 0.00 0.00 38.93 4.49
490 491 2.206750 GTGTTAGTTGAAGCCACACGA 58.793 47.619 0.00 0.00 0.00 4.35
491 492 2.610374 GTGTTAGTTGAAGCCACACGAA 59.390 45.455 0.00 0.00 0.00 3.85
492 493 3.064271 GTGTTAGTTGAAGCCACACGAAA 59.936 43.478 0.00 0.00 0.00 3.46
493 494 3.690139 TGTTAGTTGAAGCCACACGAAAA 59.310 39.130 0.00 0.00 0.00 2.29
494 495 4.156190 TGTTAGTTGAAGCCACACGAAAAA 59.844 37.500 0.00 0.00 0.00 1.94
495 496 3.145212 AGTTGAAGCCACACGAAAAAC 57.855 42.857 0.00 0.00 0.00 2.43
496 497 2.490115 AGTTGAAGCCACACGAAAAACA 59.510 40.909 0.00 0.00 0.00 2.83
497 498 2.553079 TGAAGCCACACGAAAAACAC 57.447 45.000 0.00 0.00 0.00 3.32
498 499 1.813178 TGAAGCCACACGAAAAACACA 59.187 42.857 0.00 0.00 0.00 3.72
499 500 2.425312 TGAAGCCACACGAAAAACACAT 59.575 40.909 0.00 0.00 0.00 3.21
500 501 2.774439 AGCCACACGAAAAACACATC 57.226 45.000 0.00 0.00 0.00 3.06
501 502 2.020720 AGCCACACGAAAAACACATCA 58.979 42.857 0.00 0.00 0.00 3.07
502 503 2.116366 GCCACACGAAAAACACATCAC 58.884 47.619 0.00 0.00 0.00 3.06
503 504 2.726633 CCACACGAAAAACACATCACC 58.273 47.619 0.00 0.00 0.00 4.02
504 505 2.098280 CCACACGAAAAACACATCACCA 59.902 45.455 0.00 0.00 0.00 4.17
505 506 3.243367 CCACACGAAAAACACATCACCAT 60.243 43.478 0.00 0.00 0.00 3.55
506 507 3.730215 CACACGAAAAACACATCACCATG 59.270 43.478 0.00 0.00 35.92 3.66
507 508 3.380004 ACACGAAAAACACATCACCATGT 59.620 39.130 0.00 0.00 44.72 3.21
508 509 3.974401 CACGAAAAACACATCACCATGTC 59.026 43.478 0.00 0.00 41.69 3.06
509 510 3.004315 ACGAAAAACACATCACCATGTCC 59.996 43.478 0.00 0.00 41.69 4.02
510 511 3.564511 GAAAAACACATCACCATGTCCG 58.435 45.455 0.00 0.00 41.69 4.79
511 512 2.559698 AAACACATCACCATGTCCGA 57.440 45.000 0.00 0.00 41.69 4.55
512 513 2.787473 AACACATCACCATGTCCGAT 57.213 45.000 0.00 0.00 41.69 4.18
513 514 2.315925 ACACATCACCATGTCCGATC 57.684 50.000 0.00 0.00 41.69 3.69
514 515 1.833630 ACACATCACCATGTCCGATCT 59.166 47.619 0.00 0.00 41.69 2.75
515 516 3.031013 ACACATCACCATGTCCGATCTA 58.969 45.455 0.00 0.00 41.69 1.98
516 517 3.450817 ACACATCACCATGTCCGATCTAA 59.549 43.478 0.00 0.00 41.69 2.10
517 518 4.101585 ACACATCACCATGTCCGATCTAAT 59.898 41.667 0.00 0.00 41.69 1.73
518 519 4.687948 CACATCACCATGTCCGATCTAATC 59.312 45.833 0.00 0.00 41.69 1.75
524 525 1.105167 TGTCCGATCTAATCCCGCGT 61.105 55.000 4.92 0.00 0.00 6.01
590 591 1.562008 TGGTGTCAAGAGGGTGAAACA 59.438 47.619 0.00 0.00 37.47 2.83
603 604 3.889831 GAAACAAACGGCGCCGCAT 62.890 57.895 46.22 33.31 44.19 4.73
700 701 3.806521 GGATGACATTCTTGGTGAGATCG 59.193 47.826 0.00 0.00 33.49 3.69
753 754 2.257371 CAAACCCTCGCGTCTCGA 59.743 61.111 5.77 0.00 46.29 4.04
789 790 0.034670 GCACTGCCCCTCTCAATCTT 60.035 55.000 0.00 0.00 0.00 2.40
792 793 2.092538 CACTGCCCCTCTCAATCTTGAT 60.093 50.000 0.00 0.00 36.46 2.57
813 815 4.933064 CGCGATCTCCCTGCCGAC 62.933 72.222 0.00 0.00 0.00 4.79
816 818 2.413765 GATCTCCCTGCCGACGAC 59.586 66.667 0.00 0.00 0.00 4.34
817 819 3.471244 GATCTCCCTGCCGACGACG 62.471 68.421 0.00 0.00 39.43 5.12
822 824 4.129737 CCTGCCGACGACGATGGT 62.130 66.667 9.28 0.00 42.66 3.55
824 826 1.359117 CTGCCGACGACGATGGTAT 59.641 57.895 9.28 0.00 42.66 2.73
867 869 2.597340 CATGAGGGCCCGGTTCAT 59.403 61.111 18.44 17.77 32.01 2.57
873 875 3.508840 GGCCCGGTTCATCGCTTG 61.509 66.667 0.00 0.00 0.00 4.01
879 881 1.503542 GGTTCATCGCTTGTGCCTG 59.496 57.895 0.00 0.00 35.36 4.85
882 884 3.818787 CATCGCTTGTGCCTGCCC 61.819 66.667 0.00 0.00 35.36 5.36
956 958 0.329596 ACCCTTGACAATCTCCAGGC 59.670 55.000 0.00 0.00 0.00 4.85
1086 1106 1.496001 TGCCATATCCCTGACAATGCT 59.504 47.619 0.00 0.00 0.00 3.79
1136 1156 2.952310 AGAAACTTGAACTTGTGGAGGC 59.048 45.455 0.00 0.00 0.00 4.70
1264 1284 4.415846 GGATCAACTCCCCTACCCTTAAAT 59.584 45.833 0.00 0.00 38.19 1.40
1333 1353 2.294512 CCTTCACTTGAAAGGTTGCTCC 59.705 50.000 0.00 0.00 33.07 4.70
1336 1356 4.365514 TCACTTGAAAGGTTGCTCCATA 57.634 40.909 0.00 0.00 39.02 2.74
1384 1404 4.161565 TGACAGTAATCTCCGCACCTAAAT 59.838 41.667 0.00 0.00 0.00 1.40
1392 1412 2.917933 TCCGCACCTAAATTGGAGATG 58.082 47.619 0.00 0.00 0.00 2.90
1401 1421 6.607198 CACCTAAATTGGAGATGTTGGGTTAT 59.393 38.462 0.00 0.00 0.00 1.89
1533 1560 9.755804 TTTATGAGCAGAGAAGTTACATATCAG 57.244 33.333 0.00 0.00 0.00 2.90
1630 1658 1.479323 TGGTGCGTACTATCAAGACCC 59.521 52.381 3.01 0.00 0.00 4.46
1749 1788 5.948742 TCTCCATATATGTGTTGGTGTCA 57.051 39.130 11.73 0.00 0.00 3.58
1768 1807 7.442364 TGGTGTCAAGTTTCTCTTTTGATCTAG 59.558 37.037 0.00 0.00 33.82 2.43
1771 1810 8.830580 TGTCAAGTTTCTCTTTTGATCTAGTTG 58.169 33.333 0.00 0.00 33.82 3.16
1799 1838 5.560722 TCTGAAGTGGTTGATGTTTCCTA 57.439 39.130 0.00 0.00 0.00 2.94
1806 1845 4.583073 GTGGTTGATGTTTCCTACCTGTTT 59.417 41.667 0.00 0.00 30.65 2.83
1813 1852 7.110155 TGATGTTTCCTACCTGTTTAGATTCC 58.890 38.462 0.00 0.00 0.00 3.01
1860 1899 3.113979 GGCGTCGTAAACACCGGG 61.114 66.667 6.32 0.00 0.00 5.73
1886 1925 6.775939 TTTCTCACATCTCATGATATTCGC 57.224 37.500 0.00 0.00 0.00 4.70
1969 2008 6.814343 CATTCTTTGTACTGAATGCAAAAGC 58.186 36.000 17.16 0.00 41.64 3.51
2021 2060 4.654262 TCCAGGGATTACAATGAGAGGTAC 59.346 45.833 0.00 0.00 0.00 3.34
2062 2101 2.114616 GCTTCAGATGGAGAAGAGGGA 58.885 52.381 7.08 0.00 44.00 4.20
2103 2142 3.088532 TGCTTCAAAACACCTTGTGACT 58.911 40.909 0.49 0.00 36.96 3.41
2118 2157 3.800531 TGTGACTATGATGCTCCACATG 58.199 45.455 0.00 0.00 39.84 3.21
2145 2184 4.332543 TGCATGTCGGTGATTTAGATTCAC 59.667 41.667 0.00 0.00 42.20 3.18
2199 2238 0.832983 ATGTGTGTTTGGCTGGCCAT 60.833 50.000 15.41 0.00 46.64 4.40
2205 2244 4.972733 TTGGCTGGCCATGTGCGT 62.973 61.111 15.41 0.00 46.64 5.24
2209 2248 1.153449 GCTGGCCATGTGCGTAGTA 60.153 57.895 5.51 0.00 42.61 1.82
2210 2249 0.532862 GCTGGCCATGTGCGTAGTAT 60.533 55.000 5.51 0.00 42.61 2.12
2211 2250 1.502231 CTGGCCATGTGCGTAGTATC 58.498 55.000 5.51 0.00 42.61 2.24
2213 2252 0.393077 GGCCATGTGCGTAGTATCCT 59.607 55.000 0.00 0.00 42.61 3.24
2251 2292 7.397892 TTGTGTTCTGTCCAAACTTGATTAA 57.602 32.000 0.00 0.00 0.00 1.40
2257 2298 9.528018 GTTCTGTCCAAACTTGATTAATTTTCA 57.472 29.630 0.00 0.00 0.00 2.69
2335 2376 1.342555 CATTTGTGGAGCAATGCACG 58.657 50.000 8.35 0.00 36.89 5.34
2383 2425 7.921787 ACTAAATAAAAATGACGTGTGTGTGA 58.078 30.769 0.00 0.00 0.00 3.58
2393 2436 1.067060 CGTGTGTGTGACCAGAGAAGA 59.933 52.381 0.00 0.00 0.00 2.87
2413 2456 8.115490 AGAAGATTCTGGAGGTGTTTATTTTG 57.885 34.615 0.00 0.00 35.89 2.44
2421 3034 6.451393 TGGAGGTGTTTATTTTGATTTTCCG 58.549 36.000 0.00 0.00 0.00 4.30
2436 3049 0.319555 TTCCGCTGGAACTTCACTCG 60.320 55.000 6.01 0.00 36.71 4.18
2440 3053 2.069273 CGCTGGAACTTCACTCGAATT 58.931 47.619 0.00 0.00 0.00 2.17
2450 3063 9.278734 GGAACTTCACTCGAATTATTTCATTTC 57.721 33.333 0.00 0.00 0.00 2.17
2457 3070 8.390354 CACTCGAATTATTTCATTTCTAGTGCA 58.610 33.333 0.00 0.00 36.79 4.57
2466 3079 6.426980 TTCATTTCTAGTGCAGCTTGTATG 57.573 37.500 0.00 0.00 0.00 2.39
2513 3131 7.492524 TCGAGCTTCTATGAATAGAAACATGT 58.507 34.615 12.58 0.00 45.69 3.21
2535 3153 8.961092 CATGTTTTTGTTAATGACTGAAGTGAG 58.039 33.333 0.00 0.00 0.00 3.51
2536 3154 8.050778 TGTTTTTGTTAATGACTGAAGTGAGT 57.949 30.769 0.00 0.00 0.00 3.41
2559 3177 8.768501 AGTGAGATTGTATTCTGGTACTGATA 57.231 34.615 0.00 0.00 35.89 2.15
2567 3185 9.982651 TTGTATTCTGGTACTGATAATCTAAGC 57.017 33.333 0.00 0.00 35.89 3.09
2639 3257 4.449743 TCGTTTCTGGTAATACAACTGTGC 59.550 41.667 0.00 0.00 0.00 4.57
2644 3262 2.482336 TGGTAATACAACTGTGCGCAAG 59.518 45.455 14.00 14.77 43.44 4.01
2645 3263 2.482721 GGTAATACAACTGTGCGCAAGT 59.517 45.455 14.00 15.48 41.68 3.16
2646 3264 3.680937 GGTAATACAACTGTGCGCAAGTA 59.319 43.478 14.00 10.88 41.68 2.24
2650 3268 1.202533 ACAACTGTGCGCAAGTAGACT 60.203 47.619 14.00 0.21 41.68 3.24
2663 3281 2.213499 AGTAGACTTGCTGTTGTGCAC 58.787 47.619 10.75 10.75 43.20 4.57
2672 3290 1.354337 CTGTTGTGCACCGATCCTCG 61.354 60.000 15.69 0.00 40.07 4.63
2681 3299 1.101331 ACCGATCCTCGTGGTAGAAC 58.899 55.000 2.99 0.00 38.40 3.01
2682 3300 0.384669 CCGATCCTCGTGGTAGAACC 59.615 60.000 2.99 0.00 38.40 3.62
2688 3308 3.087031 TCCTCGTGGTAGAACCTGTAAG 58.913 50.000 2.99 0.00 39.58 2.34
2693 3313 2.302157 GTGGTAGAACCTGTAAGCCAGT 59.698 50.000 0.00 0.00 39.58 4.00
2694 3314 2.565834 TGGTAGAACCTGTAAGCCAGTC 59.434 50.000 0.00 0.00 39.58 3.51
2705 3325 4.326826 TGTAAGCCAGTCCTCTGAATTTG 58.673 43.478 0.00 0.00 43.76 2.32
2718 3338 3.010027 TCTGAATTTGTGGGGCTGTATCA 59.990 43.478 0.00 0.00 0.00 2.15
2745 3365 9.573133 TTTTCTTTTCTTTCTGTTGATGAACTC 57.427 29.630 0.00 0.00 32.79 3.01
2755 3375 2.105006 TGATGAACTCTCTTGGCTGC 57.895 50.000 0.00 0.00 0.00 5.25
2759 3379 1.270518 TGAACTCTCTTGGCTGCAGTC 60.271 52.381 12.53 12.53 0.00 3.51
2835 3456 1.423921 ACCTGGGAGTGTTGGGTTAAG 59.576 52.381 0.00 0.00 0.00 1.85
2839 3460 4.166144 CCTGGGAGTGTTGGGTTAAGATAT 59.834 45.833 0.00 0.00 0.00 1.63
2850 3471 6.001449 TGGGTTAAGATATGAAGGAGGTTG 57.999 41.667 0.00 0.00 0.00 3.77
2854 3475 6.126739 GGTTAAGATATGAAGGAGGTTGAGGT 60.127 42.308 0.00 0.00 0.00 3.85
2880 3501 3.023119 AGAACTGTCATGTTTGTGGCAA 58.977 40.909 0.00 0.00 32.58 4.52
2912 3533 2.448219 GCGAGATTTTTCTGCATGAGC 58.552 47.619 0.00 0.00 42.57 4.26
2922 3554 2.079158 TCTGCATGAGCTGTTACAAGC 58.921 47.619 0.00 0.00 43.88 4.01
2941 3573 2.270047 GCTTTCAGCTGAGCTAGTGAG 58.730 52.381 17.43 4.31 36.40 3.51
2955 3587 5.697473 GCTAGTGAGCTATCAGTACATGA 57.303 43.478 0.00 0.00 45.98 3.07
2975 3607 4.274978 TGACAATGGCATCACAGAATCAT 58.725 39.130 0.00 0.00 0.00 2.45
2977 3609 5.887035 TGACAATGGCATCACAGAATCATAA 59.113 36.000 0.00 0.00 0.00 1.90
2982 3614 7.698506 ATGGCATCACAGAATCATAAATAGG 57.301 36.000 0.00 0.00 0.00 2.57
3073 3706 2.032550 TCGAATCCGACTAGTTAAGCCG 59.967 50.000 0.00 0.00 40.30 5.52
3079 3712 3.331251 CGACTAGTTAAGCCGGACTAC 57.669 52.381 5.05 0.00 0.00 2.73
3105 3738 0.702316 AACCCTAGCCGACCCATTTT 59.298 50.000 0.00 0.00 0.00 1.82
3106 3739 0.034477 ACCCTAGCCGACCCATTTTG 60.034 55.000 0.00 0.00 0.00 2.44
3107 3740 0.254747 CCCTAGCCGACCCATTTTGA 59.745 55.000 0.00 0.00 0.00 2.69
3108 3741 1.340600 CCCTAGCCGACCCATTTTGAA 60.341 52.381 0.00 0.00 0.00 2.69
3109 3742 2.654863 CCTAGCCGACCCATTTTGAAT 58.345 47.619 0.00 0.00 0.00 2.57
3110 3743 2.358898 CCTAGCCGACCCATTTTGAATG 59.641 50.000 0.00 0.00 0.00 2.67
3111 3744 1.923356 AGCCGACCCATTTTGAATGT 58.077 45.000 0.58 0.00 0.00 2.71
3114 3747 2.166829 CCGACCCATTTTGAATGTCCA 58.833 47.619 0.58 0.00 0.00 4.02
3116 3749 3.951037 CCGACCCATTTTGAATGTCCATA 59.049 43.478 0.58 0.00 0.00 2.74
3117 3750 4.584325 CCGACCCATTTTGAATGTCCATAT 59.416 41.667 0.58 0.00 0.00 1.78
3118 3751 5.507817 CCGACCCATTTTGAATGTCCATATG 60.508 44.000 0.00 0.00 0.00 1.78
3121 3754 5.725822 ACCCATTTTGAATGTCCATATGGTT 59.274 36.000 21.28 8.69 36.34 3.67
3123 3756 6.762661 CCCATTTTGAATGTCCATATGGTTTC 59.237 38.462 21.28 20.03 36.34 2.78
3124 3757 7.329499 CCATTTTGAATGTCCATATGGTTTCA 58.671 34.615 21.28 21.96 36.34 2.69
3125 3758 7.823310 CCATTTTGAATGTCCATATGGTTTCAA 59.177 33.333 27.47 27.47 37.59 2.69
3126 3759 9.217278 CATTTTGAATGTCCATATGGTTTCAAA 57.783 29.630 31.63 31.63 41.61 2.69
3151 4917 8.980143 AAAAAGTTCTCAGTTTCAAATTTCGA 57.020 26.923 0.00 0.00 0.00 3.71
3153 4919 8.566008 AAAGTTCTCAGTTTCAAATTTCGATG 57.434 30.769 0.00 0.00 0.00 3.84
3154 4920 6.672147 AGTTCTCAGTTTCAAATTTCGATGG 58.328 36.000 0.00 0.00 0.00 3.51
3160 4926 8.351495 TCAGTTTCAAATTTCGATGGAAAAAG 57.649 30.769 7.00 1.08 44.76 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.842444 CAATGTTCGTTATTTTCGTGAAAATTT 57.158 25.926 21.64 8.18 45.67 1.82
3 4 9.239002 TCAATGTTCGTTATTTTCGTGAAAATT 57.761 25.926 21.64 9.47 45.67 1.82
5 6 7.911205 AGTCAATGTTCGTTATTTTCGTGAAAA 59.089 29.630 9.94 9.94 43.48 2.29
6 7 7.411274 AGTCAATGTTCGTTATTTTCGTGAAA 58.589 30.769 0.00 0.00 0.00 2.69
7 8 6.950545 AGTCAATGTTCGTTATTTTCGTGAA 58.049 32.000 0.00 0.00 0.00 3.18
8 9 6.533819 AGTCAATGTTCGTTATTTTCGTGA 57.466 33.333 0.00 0.00 0.00 4.35
9 10 6.848800 TGAAGTCAATGTTCGTTATTTTCGTG 59.151 34.615 0.00 0.00 0.00 4.35
10 11 6.950545 TGAAGTCAATGTTCGTTATTTTCGT 58.049 32.000 0.00 0.00 0.00 3.85
11 12 6.519761 CCTGAAGTCAATGTTCGTTATTTTCG 59.480 38.462 0.00 0.00 0.00 3.46
12 13 6.801862 CCCTGAAGTCAATGTTCGTTATTTTC 59.198 38.462 0.00 0.00 0.00 2.29
13 14 6.677913 CCCTGAAGTCAATGTTCGTTATTTT 58.322 36.000 0.00 0.00 0.00 1.82
14 15 5.335661 GCCCTGAAGTCAATGTTCGTTATTT 60.336 40.000 0.00 0.00 0.00 1.40
15 16 4.156008 GCCCTGAAGTCAATGTTCGTTATT 59.844 41.667 0.00 0.00 0.00 1.40
16 17 3.689649 GCCCTGAAGTCAATGTTCGTTAT 59.310 43.478 0.00 0.00 0.00 1.89
17 18 3.071479 GCCCTGAAGTCAATGTTCGTTA 58.929 45.455 0.00 0.00 0.00 3.18
18 19 1.880027 GCCCTGAAGTCAATGTTCGTT 59.120 47.619 0.00 0.00 0.00 3.85
19 20 1.202758 TGCCCTGAAGTCAATGTTCGT 60.203 47.619 0.00 0.00 0.00 3.85
20 21 1.466167 CTGCCCTGAAGTCAATGTTCG 59.534 52.381 0.00 0.00 0.00 3.95
21 22 2.783135 TCTGCCCTGAAGTCAATGTTC 58.217 47.619 0.00 0.00 0.00 3.18
22 23 2.957402 TCTGCCCTGAAGTCAATGTT 57.043 45.000 0.00 0.00 0.00 2.71
23 24 2.957402 TTCTGCCCTGAAGTCAATGT 57.043 45.000 0.00 0.00 0.00 2.71
24 25 3.822735 TCTTTTCTGCCCTGAAGTCAATG 59.177 43.478 0.00 0.00 0.00 2.82
25 26 3.823304 GTCTTTTCTGCCCTGAAGTCAAT 59.177 43.478 0.00 0.00 0.00 2.57
26 27 3.214328 GTCTTTTCTGCCCTGAAGTCAA 58.786 45.455 0.00 0.00 0.00 3.18
27 28 2.172505 TGTCTTTTCTGCCCTGAAGTCA 59.827 45.455 0.00 0.00 0.00 3.41
28 29 2.851195 TGTCTTTTCTGCCCTGAAGTC 58.149 47.619 0.00 0.00 0.00 3.01
29 30 3.297134 TTGTCTTTTCTGCCCTGAAGT 57.703 42.857 0.00 0.00 0.00 3.01
30 31 4.861102 ATTTGTCTTTTCTGCCCTGAAG 57.139 40.909 0.00 0.00 0.00 3.02
31 32 5.612725 AAATTTGTCTTTTCTGCCCTGAA 57.387 34.783 0.00 0.00 0.00 3.02
32 33 6.916360 ATAAATTTGTCTTTTCTGCCCTGA 57.084 33.333 0.00 0.00 0.00 3.86
33 34 7.967890 AAATAAATTTGTCTTTTCTGCCCTG 57.032 32.000 0.00 0.00 0.00 4.45
34 35 8.870116 AGTAAATAAATTTGTCTTTTCTGCCCT 58.130 29.630 0.00 0.00 0.00 5.19
81 82 9.601217 GTCAAAATAGTGTGAATAGTGACCTAT 57.399 33.333 0.00 0.00 35.33 2.57
82 83 8.038944 GGTCAAAATAGTGTGAATAGTGACCTA 58.961 37.037 10.91 0.00 45.82 3.08
83 84 6.879458 GGTCAAAATAGTGTGAATAGTGACCT 59.121 38.462 10.91 0.00 45.82 3.85
84 85 6.183360 CGGTCAAAATAGTGTGAATAGTGACC 60.183 42.308 8.60 8.60 45.82 4.02
85 86 6.588756 TCGGTCAAAATAGTGTGAATAGTGAC 59.411 38.462 0.00 0.00 33.70 3.67
86 87 6.693466 TCGGTCAAAATAGTGTGAATAGTGA 58.307 36.000 0.00 0.00 0.00 3.41
87 88 6.961359 TCGGTCAAAATAGTGTGAATAGTG 57.039 37.500 0.00 0.00 0.00 2.74
88 89 7.972832 TTTCGGTCAAAATAGTGTGAATAGT 57.027 32.000 0.00 0.00 0.00 2.12
89 90 9.840427 ATTTTTCGGTCAAAATAGTGTGAATAG 57.160 29.630 0.00 0.00 35.09 1.73
93 94 9.834628 GATAATTTTTCGGTCAAAATAGTGTGA 57.165 29.630 0.00 0.00 35.67 3.58
94 95 9.840427 AGATAATTTTTCGGTCAAAATAGTGTG 57.160 29.630 0.00 0.00 35.67 3.82
166 167 9.256228 ACTTGACCTTCTATTATACTTGTGAGA 57.744 33.333 0.00 0.00 0.00 3.27
167 168 9.877178 AACTTGACCTTCTATTATACTTGTGAG 57.123 33.333 0.00 0.00 0.00 3.51
262 263 4.708576 TTGGTTTCTGGGTGTATGTACA 57.291 40.909 0.00 0.00 0.00 2.90
263 264 4.083696 CGTTTGGTTTCTGGGTGTATGTAC 60.084 45.833 0.00 0.00 0.00 2.90
264 265 4.066490 CGTTTGGTTTCTGGGTGTATGTA 58.934 43.478 0.00 0.00 0.00 2.29
265 266 2.882137 CGTTTGGTTTCTGGGTGTATGT 59.118 45.455 0.00 0.00 0.00 2.29
266 267 2.882137 ACGTTTGGTTTCTGGGTGTATG 59.118 45.455 0.00 0.00 0.00 2.39
267 268 3.217681 ACGTTTGGTTTCTGGGTGTAT 57.782 42.857 0.00 0.00 0.00 2.29
268 269 2.713863 ACGTTTGGTTTCTGGGTGTA 57.286 45.000 0.00 0.00 0.00 2.90
269 270 1.746787 GAACGTTTGGTTTCTGGGTGT 59.253 47.619 0.46 0.00 39.50 4.16
270 271 1.066454 GGAACGTTTGGTTTCTGGGTG 59.934 52.381 0.46 0.00 39.50 4.61
271 272 1.395635 GGAACGTTTGGTTTCTGGGT 58.604 50.000 0.46 0.00 39.50 4.51
272 273 0.671796 GGGAACGTTTGGTTTCTGGG 59.328 55.000 0.46 0.00 39.50 4.45
286 287 1.079057 GCTCAAGAGGGACGGGAAC 60.079 63.158 0.00 0.00 0.00 3.62
287 288 2.646175 CGCTCAAGAGGGACGGGAA 61.646 63.158 8.30 0.00 43.22 3.97
288 289 3.068691 CGCTCAAGAGGGACGGGA 61.069 66.667 8.30 0.00 43.22 5.14
289 290 4.148825 CCGCTCAAGAGGGACGGG 62.149 72.222 14.84 0.00 43.22 5.28
290 291 3.068691 TCCGCTCAAGAGGGACGG 61.069 66.667 14.84 11.11 43.22 4.79
291 292 2.492090 CTCCGCTCAAGAGGGACG 59.508 66.667 14.84 2.63 43.22 4.79
292 293 2.185608 GCTCCGCTCAAGAGGGAC 59.814 66.667 14.84 1.77 43.22 4.46
293 294 3.452786 CGCTCCGCTCAAGAGGGA 61.453 66.667 14.84 10.45 44.69 4.20
294 295 4.521062 CCGCTCCGCTCAAGAGGG 62.521 72.222 7.13 7.13 42.33 4.30
295 296 3.302347 AACCGCTCCGCTCAAGAGG 62.302 63.158 0.00 0.00 39.38 3.69
296 297 2.097038 CAACCGCTCCGCTCAAGAG 61.097 63.158 0.00 0.00 0.00 2.85
297 298 1.888436 ATCAACCGCTCCGCTCAAGA 61.888 55.000 0.00 0.00 0.00 3.02
298 299 1.448540 ATCAACCGCTCCGCTCAAG 60.449 57.895 0.00 0.00 0.00 3.02
299 300 1.741401 CATCAACCGCTCCGCTCAA 60.741 57.895 0.00 0.00 0.00 3.02
300 301 2.125552 CATCAACCGCTCCGCTCA 60.126 61.111 0.00 0.00 0.00 4.26
301 302 2.125512 ACATCAACCGCTCCGCTC 60.126 61.111 0.00 0.00 0.00 5.03
302 303 2.125512 GACATCAACCGCTCCGCT 60.126 61.111 0.00 0.00 0.00 5.52
303 304 1.298859 AAAGACATCAACCGCTCCGC 61.299 55.000 0.00 0.00 0.00 5.54
304 305 0.443869 CAAAGACATCAACCGCTCCG 59.556 55.000 0.00 0.00 0.00 4.63
305 306 0.169009 GCAAAGACATCAACCGCTCC 59.831 55.000 0.00 0.00 0.00 4.70
306 307 0.179215 CGCAAAGACATCAACCGCTC 60.179 55.000 0.00 0.00 0.00 5.03
307 308 1.868997 CGCAAAGACATCAACCGCT 59.131 52.632 0.00 0.00 0.00 5.52
308 309 1.797537 GCGCAAAGACATCAACCGC 60.798 57.895 0.30 0.00 0.00 5.68
309 310 0.040514 TTGCGCAAAGACATCAACCG 60.041 50.000 22.78 0.00 0.00 4.44
310 311 2.132740 TTTGCGCAAAGACATCAACC 57.867 45.000 30.63 0.00 0.00 3.77
329 330 1.021968 AACGCCAAGACGAGCTTTTT 58.978 45.000 0.00 0.00 33.60 1.94
330 331 0.307760 CAACGCCAAGACGAGCTTTT 59.692 50.000 0.00 0.00 33.60 2.27
331 332 0.814010 ACAACGCCAAGACGAGCTTT 60.814 50.000 0.00 0.00 33.60 3.51
332 333 1.222115 GACAACGCCAAGACGAGCTT 61.222 55.000 0.00 0.00 37.29 3.74
333 334 1.664965 GACAACGCCAAGACGAGCT 60.665 57.895 0.00 0.00 36.70 4.09
334 335 2.668280 GGACAACGCCAAGACGAGC 61.668 63.158 0.00 0.00 36.70 5.03
335 336 2.372690 CGGACAACGCCAAGACGAG 61.373 63.158 0.00 0.00 36.70 4.18
336 337 2.355363 CGGACAACGCCAAGACGA 60.355 61.111 0.00 0.00 36.70 4.20
346 347 1.008329 TCCAAAACGTCACGGACAAC 58.992 50.000 0.35 0.00 32.09 3.32
347 348 1.735386 TTCCAAAACGTCACGGACAA 58.265 45.000 0.35 0.00 32.09 3.18
348 349 1.397692 GTTTCCAAAACGTCACGGACA 59.602 47.619 0.35 0.00 32.09 4.02
349 350 1.592830 CGTTTCCAAAACGTCACGGAC 60.593 52.381 14.89 0.00 38.69 4.79
350 351 0.651551 CGTTTCCAAAACGTCACGGA 59.348 50.000 14.89 0.00 38.69 4.69
351 352 0.316360 CCGTTTCCAAAACGTCACGG 60.316 55.000 19.78 5.16 41.64 4.94
352 353 0.926628 GCCGTTTCCAAAACGTCACG 60.927 55.000 19.78 0.00 41.64 4.35
353 354 0.593008 GGCCGTTTCCAAAACGTCAC 60.593 55.000 19.78 11.02 41.64 3.67
354 355 1.728672 GGCCGTTTCCAAAACGTCA 59.271 52.632 19.78 0.00 41.64 4.35
355 356 1.369568 CGGCCGTTTCCAAAACGTC 60.370 57.895 19.50 10.14 41.64 4.34
356 357 1.655885 AACGGCCGTTTCCAAAACGT 61.656 50.000 36.96 12.22 41.64 3.99
357 358 1.064458 AACGGCCGTTTCCAAAACG 59.936 52.632 36.96 15.89 42.74 3.60
358 359 1.484227 GCAACGGCCGTTTCCAAAAC 61.484 55.000 39.64 18.79 36.00 2.43
359 360 1.227002 GCAACGGCCGTTTCCAAAA 60.227 52.632 39.64 0.00 36.00 2.44
360 361 2.413765 GCAACGGCCGTTTCCAAA 59.586 55.556 39.64 0.00 36.00 3.28
361 362 3.955101 CGCAACGGCCGTTTCCAA 61.955 61.111 39.64 0.00 36.00 3.53
373 374 3.164011 CTCGTCGACGACCGCAAC 61.164 66.667 34.97 0.00 44.22 4.17
374 375 3.304764 CTCTCGTCGACGACCGCAA 62.305 63.158 34.97 15.27 44.22 4.85
375 376 3.785499 CTCTCGTCGACGACCGCA 61.785 66.667 34.97 18.10 44.22 5.69
376 377 4.517703 CCTCTCGTCGACGACCGC 62.518 72.222 34.97 0.00 44.22 5.68
377 378 2.294097 CTTCCTCTCGTCGACGACCG 62.294 65.000 34.97 25.92 44.22 4.79
378 379 1.018226 TCTTCCTCTCGTCGACGACC 61.018 60.000 34.97 0.00 44.22 4.79
379 380 0.370958 CTCTTCCTCTCGTCGACGAC 59.629 60.000 34.97 18.04 44.22 4.34
381 382 1.061253 GCTCTTCCTCTCGTCGACG 59.939 63.158 31.30 31.30 41.45 5.12
382 383 0.179184 GTGCTCTTCCTCTCGTCGAC 60.179 60.000 5.18 5.18 0.00 4.20
383 384 1.306642 GGTGCTCTTCCTCTCGTCGA 61.307 60.000 0.00 0.00 0.00 4.20
384 385 1.137825 GGTGCTCTTCCTCTCGTCG 59.862 63.158 0.00 0.00 0.00 5.12
385 386 0.109039 GTGGTGCTCTTCCTCTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
386 387 1.536943 GGTGGTGCTCTTCCTCTCGT 61.537 60.000 0.00 0.00 0.00 4.18
387 388 1.216710 GGTGGTGCTCTTCCTCTCG 59.783 63.158 0.00 0.00 0.00 4.04
388 389 1.216710 CGGTGGTGCTCTTCCTCTC 59.783 63.158 0.00 0.00 0.00 3.20
389 390 2.286523 CCGGTGGTGCTCTTCCTCT 61.287 63.158 0.00 0.00 0.00 3.69
390 391 2.266055 CCGGTGGTGCTCTTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
391 392 2.203788 TCCGGTGGTGCTCTTCCT 60.204 61.111 0.00 0.00 0.00 3.36
392 393 2.047179 GTCCGGTGGTGCTCTTCC 60.047 66.667 0.00 0.00 0.00 3.46
393 394 2.432628 CGTCCGGTGGTGCTCTTC 60.433 66.667 0.00 0.00 0.00 2.87
394 395 4.003788 CCGTCCGGTGGTGCTCTT 62.004 66.667 0.00 0.00 0.00 2.85
399 400 4.388499 CCTTCCCGTCCGGTGGTG 62.388 72.222 13.28 6.29 0.00 4.17
400 401 4.626402 TCCTTCCCGTCCGGTGGT 62.626 66.667 13.28 0.00 0.00 4.16
401 402 4.078516 GTCCTTCCCGTCCGGTGG 62.079 72.222 0.00 4.72 0.00 4.61
402 403 4.430765 CGTCCTTCCCGTCCGGTG 62.431 72.222 0.00 0.00 0.00 4.94
410 411 2.125391 GGTAACGGCGTCCTTCCC 60.125 66.667 15.17 5.29 0.00 3.97
422 423 1.079612 CCGTTCAGTCCCCGGTAAC 60.080 63.158 0.00 0.00 37.00 2.50
423 424 1.228831 TCCGTTCAGTCCCCGGTAA 60.229 57.895 0.00 0.00 42.30 2.85
424 425 1.679977 CTCCGTTCAGTCCCCGGTA 60.680 63.158 0.00 0.00 42.30 4.02
425 426 2.995574 CTCCGTTCAGTCCCCGGT 60.996 66.667 0.00 0.00 42.30 5.28
426 427 3.771160 CCTCCGTTCAGTCCCCGG 61.771 72.222 0.00 0.00 43.03 5.73
427 428 3.771160 CCCTCCGTTCAGTCCCCG 61.771 72.222 0.00 0.00 0.00 5.73
428 429 2.284405 TCCCTCCGTTCAGTCCCC 60.284 66.667 0.00 0.00 0.00 4.81
429 430 0.324091 TACTCCCTCCGTTCAGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
430 431 1.204231 GTTACTCCCTCCGTTCAGTCC 59.796 57.143 0.00 0.00 0.00 3.85
431 432 1.891150 TGTTACTCCCTCCGTTCAGTC 59.109 52.381 0.00 0.00 0.00 3.51
432 433 2.005370 TGTTACTCCCTCCGTTCAGT 57.995 50.000 0.00 0.00 0.00 3.41
433 434 3.195825 AGAATGTTACTCCCTCCGTTCAG 59.804 47.826 0.00 0.00 0.00 3.02
434 435 3.170717 AGAATGTTACTCCCTCCGTTCA 58.829 45.455 0.00 0.00 0.00 3.18
435 436 3.889520 AGAATGTTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
436 437 3.307480 CCAAGAATGTTACTCCCTCCGTT 60.307 47.826 0.00 0.00 0.00 4.44
437 438 2.236395 CCAAGAATGTTACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
438 439 2.236395 ACCAAGAATGTTACTCCCTCCG 59.764 50.000 0.00 0.00 0.00 4.63
439 440 4.302559 AACCAAGAATGTTACTCCCTCC 57.697 45.455 0.00 0.00 0.00 4.30
440 441 9.628500 AAATATAACCAAGAATGTTACTCCCTC 57.372 33.333 0.00 0.00 31.47 4.30
445 446 9.895138 ACCGTAAATATAACCAAGAATGTTACT 57.105 29.630 0.00 0.00 31.47 2.24
446 447 9.925268 CACCGTAAATATAACCAAGAATGTTAC 57.075 33.333 0.00 0.00 31.47 2.50
447 448 9.669887 ACACCGTAAATATAACCAAGAATGTTA 57.330 29.630 0.00 0.00 33.09 2.41
448 449 8.570068 ACACCGTAAATATAACCAAGAATGTT 57.430 30.769 0.00 0.00 0.00 2.71
449 450 8.570068 AACACCGTAAATATAACCAAGAATGT 57.430 30.769 0.00 0.00 0.00 2.71
451 452 9.895138 ACTAACACCGTAAATATAACCAAGAAT 57.105 29.630 0.00 0.00 0.00 2.40
452 453 9.723601 AACTAACACCGTAAATATAACCAAGAA 57.276 29.630 0.00 0.00 0.00 2.52
453 454 9.153721 CAACTAACACCGTAAATATAACCAAGA 57.846 33.333 0.00 0.00 0.00 3.02
454 455 9.153721 TCAACTAACACCGTAAATATAACCAAG 57.846 33.333 0.00 0.00 0.00 3.61
455 456 9.499479 TTCAACTAACACCGTAAATATAACCAA 57.501 29.630 0.00 0.00 0.00 3.67
456 457 9.153721 CTTCAACTAACACCGTAAATATAACCA 57.846 33.333 0.00 0.00 0.00 3.67
457 458 8.118607 GCTTCAACTAACACCGTAAATATAACC 58.881 37.037 0.00 0.00 0.00 2.85
458 459 8.118607 GGCTTCAACTAACACCGTAAATATAAC 58.881 37.037 0.00 0.00 0.00 1.89
459 460 7.823310 TGGCTTCAACTAACACCGTAAATATAA 59.177 33.333 0.00 0.00 0.00 0.98
460 461 7.278424 GTGGCTTCAACTAACACCGTAAATATA 59.722 37.037 0.00 0.00 0.00 0.86
461 462 6.093082 GTGGCTTCAACTAACACCGTAAATAT 59.907 38.462 0.00 0.00 0.00 1.28
462 463 5.409214 GTGGCTTCAACTAACACCGTAAATA 59.591 40.000 0.00 0.00 0.00 1.40
463 464 4.214758 GTGGCTTCAACTAACACCGTAAAT 59.785 41.667 0.00 0.00 0.00 1.40
464 465 3.560896 GTGGCTTCAACTAACACCGTAAA 59.439 43.478 0.00 0.00 0.00 2.01
465 466 3.132925 GTGGCTTCAACTAACACCGTAA 58.867 45.455 0.00 0.00 0.00 3.18
466 467 2.102757 TGTGGCTTCAACTAACACCGTA 59.897 45.455 0.00 0.00 0.00 4.02
467 468 1.134340 TGTGGCTTCAACTAACACCGT 60.134 47.619 0.00 0.00 0.00 4.83
468 469 1.263217 GTGTGGCTTCAACTAACACCG 59.737 52.381 0.00 0.00 36.07 4.94
469 470 1.263217 CGTGTGGCTTCAACTAACACC 59.737 52.381 0.00 0.00 38.28 4.16
470 471 2.206750 TCGTGTGGCTTCAACTAACAC 58.793 47.619 0.00 0.00 38.18 3.32
471 472 2.605837 TCGTGTGGCTTCAACTAACA 57.394 45.000 0.00 0.00 0.00 2.41
472 473 3.955771 TTTCGTGTGGCTTCAACTAAC 57.044 42.857 0.00 0.00 0.00 2.34
473 474 4.156190 TGTTTTTCGTGTGGCTTCAACTAA 59.844 37.500 0.00 0.00 0.00 2.24
474 475 3.690139 TGTTTTTCGTGTGGCTTCAACTA 59.310 39.130 0.00 0.00 0.00 2.24
475 476 2.490115 TGTTTTTCGTGTGGCTTCAACT 59.510 40.909 0.00 0.00 0.00 3.16
476 477 2.596862 GTGTTTTTCGTGTGGCTTCAAC 59.403 45.455 0.00 0.00 0.00 3.18
477 478 2.229062 TGTGTTTTTCGTGTGGCTTCAA 59.771 40.909 0.00 0.00 0.00 2.69
478 479 1.813178 TGTGTTTTTCGTGTGGCTTCA 59.187 42.857 0.00 0.00 0.00 3.02
479 480 2.553079 TGTGTTTTTCGTGTGGCTTC 57.447 45.000 0.00 0.00 0.00 3.86
480 481 2.425312 TGATGTGTTTTTCGTGTGGCTT 59.575 40.909 0.00 0.00 0.00 4.35
481 482 2.020720 TGATGTGTTTTTCGTGTGGCT 58.979 42.857 0.00 0.00 0.00 4.75
482 483 2.116366 GTGATGTGTTTTTCGTGTGGC 58.884 47.619 0.00 0.00 0.00 5.01
483 484 2.098280 TGGTGATGTGTTTTTCGTGTGG 59.902 45.455 0.00 0.00 0.00 4.17
484 485 3.412981 TGGTGATGTGTTTTTCGTGTG 57.587 42.857 0.00 0.00 0.00 3.82
485 486 3.380004 ACATGGTGATGTGTTTTTCGTGT 59.620 39.130 0.00 0.00 41.52 4.49
486 487 3.963665 ACATGGTGATGTGTTTTTCGTG 58.036 40.909 0.00 0.00 41.52 4.35
487 488 3.004315 GGACATGGTGATGTGTTTTTCGT 59.996 43.478 0.00 0.00 43.22 3.85
488 489 3.564511 GGACATGGTGATGTGTTTTTCG 58.435 45.455 0.00 0.00 43.22 3.46
489 490 3.252215 TCGGACATGGTGATGTGTTTTTC 59.748 43.478 0.00 0.00 43.22 2.29
490 491 3.218453 TCGGACATGGTGATGTGTTTTT 58.782 40.909 0.00 0.00 43.22 1.94
491 492 2.857483 TCGGACATGGTGATGTGTTTT 58.143 42.857 0.00 0.00 43.22 2.43
492 493 2.559698 TCGGACATGGTGATGTGTTT 57.440 45.000 0.00 0.00 43.22 2.83
493 494 2.237143 AGATCGGACATGGTGATGTGTT 59.763 45.455 0.00 0.00 43.22 3.32
494 495 1.833630 AGATCGGACATGGTGATGTGT 59.166 47.619 0.00 0.00 43.22 3.72
495 496 2.609427 AGATCGGACATGGTGATGTG 57.391 50.000 0.00 0.00 43.22 3.21
496 497 4.262635 GGATTAGATCGGACATGGTGATGT 60.263 45.833 0.00 0.00 46.01 3.06
497 498 4.248859 GGATTAGATCGGACATGGTGATG 58.751 47.826 0.00 0.00 35.49 3.07
498 499 3.261897 GGGATTAGATCGGACATGGTGAT 59.738 47.826 0.00 0.00 0.00 3.06
499 500 2.632996 GGGATTAGATCGGACATGGTGA 59.367 50.000 0.00 0.00 0.00 4.02
500 501 2.610479 CGGGATTAGATCGGACATGGTG 60.610 54.545 0.00 0.00 0.00 4.17
501 502 1.618837 CGGGATTAGATCGGACATGGT 59.381 52.381 0.00 0.00 0.00 3.55
502 503 1.673033 GCGGGATTAGATCGGACATGG 60.673 57.143 0.00 0.00 0.00 3.66
503 504 1.714794 GCGGGATTAGATCGGACATG 58.285 55.000 0.00 0.00 0.00 3.21
504 505 0.243907 CGCGGGATTAGATCGGACAT 59.756 55.000 0.00 0.00 0.00 3.06
505 506 1.105167 ACGCGGGATTAGATCGGACA 61.105 55.000 12.47 0.00 0.00 4.02
506 507 0.877071 TACGCGGGATTAGATCGGAC 59.123 55.000 12.47 0.00 0.00 4.79
507 508 1.162698 CTACGCGGGATTAGATCGGA 58.837 55.000 12.47 0.00 0.00 4.55
508 509 1.130749 CTCTACGCGGGATTAGATCGG 59.869 57.143 12.47 0.00 0.00 4.18
509 510 1.466024 GCTCTACGCGGGATTAGATCG 60.466 57.143 12.47 0.00 0.00 3.69
510 511 2.265647 GCTCTACGCGGGATTAGATC 57.734 55.000 12.47 0.00 0.00 2.75
590 591 3.276846 GGATATGCGGCGCCGTTT 61.277 61.111 45.02 34.27 42.09 3.60
603 604 2.812499 GGCGCCTCTTCGTGGATA 59.188 61.111 22.15 0.00 0.00 2.59
631 632 1.813786 CTCTTCGTCGTCCTCTTCCTT 59.186 52.381 0.00 0.00 0.00 3.36
700 701 3.462678 GGTGGGGAGGAGCGAGAC 61.463 72.222 0.00 0.00 0.00 3.36
753 754 1.051008 TGCGCCATAGATGACTCCAT 58.949 50.000 4.18 0.00 35.29 3.41
757 758 0.531532 GCAGTGCGCCATAGATGACT 60.532 55.000 4.18 0.00 32.94 3.41
789 790 0.103026 CAGGGAGATCGCGACAATCA 59.897 55.000 12.93 0.00 0.00 2.57
792 793 2.184322 GCAGGGAGATCGCGACAA 59.816 61.111 12.93 0.00 0.00 3.18
813 815 2.317679 CGAGGAGAATACCATCGTCG 57.682 55.000 3.37 3.37 44.22 5.12
816 818 1.068194 GCTCCGAGGAGAATACCATCG 60.068 57.143 22.32 0.00 44.53 3.84
817 819 1.273886 GGCTCCGAGGAGAATACCATC 59.726 57.143 22.32 2.34 44.53 3.51
822 824 1.705873 GGAAGGCTCCGAGGAGAATA 58.294 55.000 22.32 0.00 44.53 1.75
824 826 4.035843 GGAAGGCTCCGAGGAGAA 57.964 61.111 22.32 0.00 44.53 2.87
867 869 4.704833 GAGGGCAGGCACAAGCGA 62.705 66.667 0.00 0.00 43.41 4.93
956 958 4.056740 TGTATCTAGGTAGAACTCGAGCG 58.943 47.826 13.61 0.00 35.69 5.03
1107 1127 2.225467 AGTTCAAGTTTCTGGAGCTGC 58.775 47.619 0.00 0.00 0.00 5.25
1136 1156 1.661341 CGAGCCCTCTGAGATTTTGG 58.339 55.000 6.17 0.00 0.00 3.28
1311 1331 3.214328 GAGCAACCTTTCAAGTGAAGGA 58.786 45.455 9.69 0.00 33.54 3.36
1336 1356 8.124823 CAGTCGCATTTTCACATGAAGTATAAT 58.875 33.333 0.00 0.00 35.21 1.28
1384 1404 7.638444 TCAGAAATATAACCCAACATCTCCAA 58.362 34.615 0.00 0.00 0.00 3.53
1391 1411 8.759481 TGCATATTCAGAAATATAACCCAACA 57.241 30.769 0.00 0.00 36.18 3.33
1392 1412 9.066892 TCTGCATATTCAGAAATATAACCCAAC 57.933 33.333 2.29 0.00 39.89 3.77
1401 1421 8.806429 TTTTGGAGTCTGCATATTCAGAAATA 57.194 30.769 6.64 0.00 43.89 1.40
1469 1496 3.116079 ACCTTGAAAAAGCAATGCAGG 57.884 42.857 8.35 5.96 0.00 4.85
1556 1584 6.757897 TTATCAAGCATGGAAGACGAAATT 57.242 33.333 0.00 0.00 0.00 1.82
1557 1585 6.183360 CCTTTATCAAGCATGGAAGACGAAAT 60.183 38.462 0.00 0.00 0.00 2.17
1558 1586 5.123820 CCTTTATCAAGCATGGAAGACGAAA 59.876 40.000 0.00 0.00 0.00 3.46
1749 1788 9.495572 CTACCAACTAGATCAAAAGAGAAACTT 57.504 33.333 0.00 0.00 40.98 2.66
1768 1807 4.448210 TCAACCACTTCAGAACTACCAAC 58.552 43.478 0.00 0.00 0.00 3.77
1771 1810 4.642429 ACATCAACCACTTCAGAACTACC 58.358 43.478 0.00 0.00 0.00 3.18
1813 1852 2.803492 GCTACCCCTGCTGTAGATTTCG 60.803 54.545 1.80 0.00 38.34 3.46
1860 1899 7.956403 GCGAATATCATGAGATGTGAGAAAATC 59.044 37.037 3.05 0.00 35.67 2.17
1886 1925 8.839310 AATATCCCAGAAATATCGTCTTCAAG 57.161 34.615 0.00 0.00 0.00 3.02
2021 2060 3.665323 GCACACTATGTTGTTCTGCGAAG 60.665 47.826 0.00 0.00 0.00 3.79
2062 2101 3.677424 GCAAAGTCGAGCACCTCTAGAAT 60.677 47.826 0.00 0.00 0.00 2.40
2103 2142 3.143728 GCATGACATGTGGAGCATCATA 58.856 45.455 16.62 0.00 35.19 2.15
2118 2157 3.871006 TCTAAATCACCGACATGCATGAC 59.129 43.478 32.75 24.87 0.00 3.06
2209 2248 5.513233 ACACAAAATGAGATAGGCAAGGAT 58.487 37.500 0.00 0.00 0.00 3.24
2210 2249 4.922206 ACACAAAATGAGATAGGCAAGGA 58.078 39.130 0.00 0.00 0.00 3.36
2211 2250 5.416952 AGAACACAAAATGAGATAGGCAAGG 59.583 40.000 0.00 0.00 0.00 3.61
2213 2252 5.769662 ACAGAACACAAAATGAGATAGGCAA 59.230 36.000 0.00 0.00 0.00 4.52
2335 2376 7.095270 AGTCCTGAATCTTTTCATTGCAATTC 58.905 34.615 9.83 3.67 40.95 2.17
2364 2405 3.939592 TGGTCACACACACGTCATTTTTA 59.060 39.130 0.00 0.00 0.00 1.52
2367 2408 1.939934 CTGGTCACACACACGTCATTT 59.060 47.619 0.00 0.00 0.00 2.32
2372 2413 0.821517 TTCTCTGGTCACACACACGT 59.178 50.000 0.00 0.00 0.00 4.49
2393 2436 9.710900 GAAAATCAAAATAAACACCTCCAGAAT 57.289 29.630 0.00 0.00 0.00 2.40
2413 2456 2.814336 AGTGAAGTTCCAGCGGAAAATC 59.186 45.455 10.87 11.84 43.86 2.17
2421 3034 5.803020 AATAATTCGAGTGAAGTTCCAGC 57.197 39.130 0.00 0.00 37.57 4.85
2436 3049 9.017669 CAAGCTGCACTAGAAATGAAATAATTC 57.982 33.333 1.02 0.00 36.04 2.17
2440 3053 8.615211 CATACAAGCTGCACTAGAAATGAAATA 58.385 33.333 1.02 0.00 0.00 1.40
2450 3063 5.236282 AGCATATCATACAAGCTGCACTAG 58.764 41.667 1.02 0.00 33.67 2.57
2457 3070 5.061853 CCACAGAAGCATATCATACAAGCT 58.938 41.667 0.00 0.00 37.08 3.74
2513 3131 8.275015 TCACTCACTTCAGTCATTAACAAAAA 57.725 30.769 0.00 0.00 0.00 1.94
2518 3136 7.386299 ACAATCTCACTCACTTCAGTCATTAAC 59.614 37.037 0.00 0.00 0.00 2.01
2521 3139 5.862845 ACAATCTCACTCACTTCAGTCATT 58.137 37.500 0.00 0.00 0.00 2.57
2522 3140 5.480642 ACAATCTCACTCACTTCAGTCAT 57.519 39.130 0.00 0.00 0.00 3.06
2523 3141 4.944619 ACAATCTCACTCACTTCAGTCA 57.055 40.909 0.00 0.00 0.00 3.41
2524 3142 7.275341 CAGAATACAATCTCACTCACTTCAGTC 59.725 40.741 0.00 0.00 0.00 3.51
2535 3153 9.988815 ATTATCAGTACCAGAATACAATCTCAC 57.011 33.333 0.00 0.00 0.00 3.51
2559 3177 1.073923 CCCCCTTATGCCGCTTAGATT 59.926 52.381 0.00 0.00 0.00 2.40
2563 3181 0.920438 TTTCCCCCTTATGCCGCTTA 59.080 50.000 0.00 0.00 0.00 3.09
2567 3185 1.408702 CAACATTTCCCCCTTATGCCG 59.591 52.381 0.00 0.00 0.00 5.69
2607 3225 7.160049 TGTATTACCAGAAACGAACCAACATA 58.840 34.615 0.00 0.00 0.00 2.29
2672 3290 2.973945 CTGGCTTACAGGTTCTACCAC 58.026 52.381 0.00 0.00 41.95 4.16
2688 3308 1.815003 CCACAAATTCAGAGGACTGGC 59.185 52.381 0.00 0.00 43.60 4.85
2693 3313 1.075601 AGCCCCACAAATTCAGAGGA 58.924 50.000 0.00 0.00 0.00 3.71
2694 3314 1.180029 CAGCCCCACAAATTCAGAGG 58.820 55.000 0.00 0.00 0.00 3.69
2705 3325 5.185828 AGAAAAGAAAATGATACAGCCCCAC 59.814 40.000 0.00 0.00 0.00 4.61
2743 3363 0.607112 TGAGACTGCAGCCAAGAGAG 59.393 55.000 15.27 0.00 0.00 3.20
2745 3365 1.654317 GATGAGACTGCAGCCAAGAG 58.346 55.000 15.27 0.00 0.00 2.85
2755 3375 4.885907 ACATAAATTGGCAGGATGAGACTG 59.114 41.667 6.90 0.00 39.69 3.51
2759 3379 5.587388 ACAACATAAATTGGCAGGATGAG 57.413 39.130 6.90 3.08 33.51 2.90
2768 3388 6.146021 GCAGTGGAAAGAACAACATAAATTGG 59.854 38.462 0.00 0.00 33.63 3.16
2807 3428 1.002868 CACTCCCAGGTTCAGCAGG 60.003 63.158 0.00 0.00 0.00 4.85
2835 3456 3.385111 ACGACCTCAACCTCCTTCATATC 59.615 47.826 0.00 0.00 0.00 1.63
2839 3460 0.679505 CACGACCTCAACCTCCTTCA 59.320 55.000 0.00 0.00 0.00 3.02
2850 3471 2.029828 ACATGACAGTTCTCACGACCTC 60.030 50.000 0.00 0.00 0.00 3.85
2854 3475 3.555547 CACAAACATGACAGTTCTCACGA 59.444 43.478 0.00 0.00 0.00 4.35
2863 3484 3.979948 TGAATTGCCACAAACATGACAG 58.020 40.909 0.00 0.00 0.00 3.51
2880 3501 5.352569 AGAAAAATCTCGCGTCATTCTGAAT 59.647 36.000 5.77 0.00 0.00 2.57
2899 3520 4.557296 GCTTGTAACAGCTCATGCAGAAAA 60.557 41.667 0.00 0.00 42.74 2.29
2922 3554 2.270047 GCTCACTAGCTCAGCTGAAAG 58.730 52.381 18.85 16.76 45.85 2.62
2941 3573 4.129380 TGCCATTGTCATGTACTGATAGC 58.871 43.478 0.00 0.00 35.97 2.97
2946 3578 3.690628 TGTGATGCCATTGTCATGTACTG 59.309 43.478 0.00 0.00 0.00 2.74
2955 3587 6.778834 TTTATGATTCTGTGATGCCATTGT 57.221 33.333 0.00 0.00 0.00 2.71
2977 3609 8.000709 ACATGTTCATATGGACATTCACCTATT 58.999 33.333 24.51 1.29 32.32 1.73
2982 3614 6.441093 ACACATGTTCATATGGACATTCAC 57.559 37.500 24.51 0.00 32.32 3.18
3052 3685 3.705043 GGCTTAACTAGTCGGATTCGA 57.295 47.619 0.00 0.00 43.86 3.71
3073 3706 2.993008 GGGTTTCCCCCGTAGTCC 59.007 66.667 0.00 0.00 45.80 3.85
3094 3727 2.166829 TGGACATTCAAAATGGGTCGG 58.833 47.619 4.82 0.00 0.00 4.79
3097 3730 5.279685 ACCATATGGACATTCAAAATGGGT 58.720 37.500 28.77 0.00 37.98 4.51
3099 3732 7.329499 TGAAACCATATGGACATTCAAAATGG 58.671 34.615 28.77 8.70 38.82 3.16
3126 3759 8.980143 TCGAAATTTGAAACTGAGAACTTTTT 57.020 26.923 0.00 0.00 0.00 1.94
3138 4904 8.599774 TGAACTTTTTCCATCGAAATTTGAAAC 58.400 29.630 0.00 0.00 37.81 2.78
3139 4905 8.709386 TGAACTTTTTCCATCGAAATTTGAAA 57.291 26.923 0.00 0.00 37.81 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.