Multiple sequence alignment - TraesCS1D01G333300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G333300 chr1D 100.000 3069 0 0 1 3069 423642706 423645774 0.000000e+00 5668.0
1 TraesCS1D01G333300 chr1D 92.881 604 32 7 184 784 423633787 423634382 0.000000e+00 867.0
2 TraesCS1D01G333300 chr1D 89.502 562 54 1 1591 2147 423882817 423883378 0.000000e+00 706.0
3 TraesCS1D01G333300 chr1D 93.160 307 15 3 993 1299 423881982 423882282 2.170000e-121 446.0
4 TraesCS1D01G333300 chr1D 90.476 147 14 0 1 147 423612708 423612854 8.680000e-46 195.0
5 TraesCS1D01G333300 chr1A 94.918 1338 39 6 1032 2343 519818987 519820321 0.000000e+00 2067.0
6 TraesCS1D01G333300 chr1A 89.866 819 78 2 1325 2138 520351461 520350643 0.000000e+00 1048.0
7 TraesCS1D01G333300 chr1A 90.714 560 47 1 1593 2147 520394284 520394843 0.000000e+00 741.0
8 TraesCS1D01G333300 chr1A 91.026 546 44 1 1591 2131 520401759 520402304 0.000000e+00 732.0
9 TraesCS1D01G333300 chr1A 85.481 613 63 9 993 1587 520401038 520401642 1.560000e-172 616.0
10 TraesCS1D01G333300 chr1A 84.878 615 54 17 993 1580 520393567 520394169 4.410000e-163 584.0
11 TraesCS1D01G333300 chr1A 92.056 214 15 2 2795 3008 519820560 519820771 1.790000e-77 300.0
12 TraesCS1D01G333300 chr1A 92.228 193 15 0 1068 1260 520355220 520355028 1.080000e-69 274.0
13 TraesCS1D01G333300 chr1A 95.833 48 2 0 993 1040 519817089 519817136 9.120000e-11 78.7
14 TraesCS1D01G333300 chr2D 87.030 771 66 20 51 796 508076701 508077462 0.000000e+00 839.0
15 TraesCS1D01G333300 chr2D 84.593 344 32 11 2443 2784 2621573 2621897 3.820000e-84 322.0
16 TraesCS1D01G333300 chr2D 84.290 331 30 11 2456 2784 449688209 449687899 1.380000e-78 303.0
17 TraesCS1D01G333300 chr2A 89.864 661 42 9 1 644 18074950 18075602 0.000000e+00 826.0
18 TraesCS1D01G333300 chr2A 80.370 433 55 18 2356 2784 710650238 710649832 4.970000e-78 302.0
19 TraesCS1D01G333300 chr2A 81.957 327 40 15 482 796 65944538 65944219 3.040000e-65 259.0
20 TraesCS1D01G333300 chr1B 89.539 564 54 1 1591 2149 573569286 573569849 0.000000e+00 710.0
21 TraesCS1D01G333300 chr1B 85.167 600 69 10 993 1580 573568502 573569093 5.660000e-167 597.0
22 TraesCS1D01G333300 chr1B 76.471 408 59 22 2356 2752 331577382 331577001 1.450000e-43 187.0
23 TraesCS1D01G333300 chr7D 84.284 719 68 16 51 766 591972878 591972202 0.000000e+00 660.0
24 TraesCS1D01G333300 chr7D 89.655 261 22 4 51 309 591973686 591973429 8.210000e-86 327.0
25 TraesCS1D01G333300 chr7D 84.548 343 37 7 2443 2784 96078106 96077779 2.950000e-85 326.0
26 TraesCS1D01G333300 chr3D 83.911 721 81 17 51 766 202380792 202381482 0.000000e+00 656.0
27 TraesCS1D01G333300 chr3D 85.199 554 74 6 1591 2138 573871342 573870791 2.070000e-156 562.0
28 TraesCS1D01G333300 chr3D 85.630 341 29 7 2445 2784 519879811 519880132 1.050000e-89 340.0
29 TraesCS1D01G333300 chr3D 81.265 427 55 12 2360 2784 83941260 83940857 3.820000e-84 322.0
30 TraesCS1D01G333300 chr3D 81.390 403 42 17 2356 2751 524645322 524645698 6.430000e-77 298.0
31 TraesCS1D01G333300 chr3D 85.985 264 34 2 994 1257 573872510 573872250 2.330000e-71 279.0
32 TraesCS1D01G333300 chr3D 85.769 260 35 2 51 309 202380005 202380263 1.080000e-69 274.0
33 TraesCS1D01G333300 chr3D 87.448 239 25 4 516 750 556837854 556837617 1.400000e-68 270.0
34 TraesCS1D01G333300 chr3A 84.838 554 76 6 1591 2138 708932306 708931755 4.470000e-153 551.0
35 TraesCS1D01G333300 chr3A 86.858 487 44 13 51 522 59487249 59487730 7.540000e-146 527.0
36 TraesCS1D01G333300 chr3A 85.714 462 41 14 350 798 586403788 586404237 5.990000e-127 464.0
37 TraesCS1D01G333300 chr3A 79.953 429 49 18 2360 2784 658982654 658983049 6.480000e-72 281.0
38 TraesCS1D01G333300 chr3A 87.336 229 29 0 1029 1257 708933588 708933360 2.350000e-66 263.0
39 TraesCS1D01G333300 chr3B 84.657 554 77 6 1591 2138 763262574 763263125 2.080000e-151 545.0
40 TraesCS1D01G333300 chr3B 85.965 342 29 8 2443 2782 9426427 9426103 6.300000e-92 348.0
41 TraesCS1D01G333300 chr3B 86.364 264 33 2 994 1257 763260397 763260657 5.010000e-73 285.0
42 TraesCS1D01G333300 chrUn 86.199 413 39 15 346 750 154612346 154612748 6.080000e-117 431.0
43 TraesCS1D01G333300 chrUn 81.905 315 33 13 2445 2759 37381622 37381332 8.500000e-61 244.0
44 TraesCS1D01G333300 chr5D 82.569 436 51 14 2352 2786 501436799 501436388 8.090000e-96 361.0
45 TraesCS1D01G333300 chr7A 82.448 433 46 18 2356 2786 10021230 10020826 4.870000e-93 351.0
46 TraesCS1D01G333300 chr7A 87.645 259 20 11 494 748 531744482 531744732 1.080000e-74 291.0
47 TraesCS1D01G333300 chr6D 82.028 434 48 23 2357 2784 428884763 428885172 2.930000e-90 342.0
48 TraesCS1D01G333300 chr6D 81.250 432 55 12 2356 2785 457095975 457095568 2.950000e-85 326.0
49 TraesCS1D01G333300 chr4D 82.299 435 39 20 2356 2784 101440535 101440133 2.930000e-90 342.0
50 TraesCS1D01G333300 chr7B 91.358 243 17 4 230 471 463655169 463654930 2.280000e-86 329.0
51 TraesCS1D01G333300 chr7B 77.403 385 50 16 2356 2731 667469567 667469923 8.680000e-46 195.0
52 TraesCS1D01G333300 chr6B 84.814 349 25 17 2443 2784 48550390 48550717 2.950000e-85 326.0
53 TraesCS1D01G333300 chr6B 82.948 346 36 12 2443 2784 476419499 476419825 1.080000e-74 291.0
54 TraesCS1D01G333300 chr5B 83.908 348 36 9 2443 2789 372162342 372162014 6.390000e-82 315.0
55 TraesCS1D01G333300 chr6A 86.822 258 26 5 495 748 293324254 293324001 6.480000e-72 281.0
56 TraesCS1D01G333300 chr5A 83.673 294 34 11 520 805 37141845 37141558 6.520000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G333300 chr1D 423642706 423645774 3068 False 5668.000000 5668 100.0000 1 3069 1 chr1D.!!$F3 3068
1 TraesCS1D01G333300 chr1D 423633787 423634382 595 False 867.000000 867 92.8810 184 784 1 chr1D.!!$F2 600
2 TraesCS1D01G333300 chr1D 423881982 423883378 1396 False 576.000000 706 91.3310 993 2147 2 chr1D.!!$F4 1154
3 TraesCS1D01G333300 chr1A 519817089 519820771 3682 False 815.233333 2067 94.2690 993 3008 3 chr1A.!!$F1 2015
4 TraesCS1D01G333300 chr1A 520401038 520402304 1266 False 674.000000 732 88.2535 993 2131 2 chr1A.!!$F3 1138
5 TraesCS1D01G333300 chr1A 520393567 520394843 1276 False 662.500000 741 87.7960 993 2147 2 chr1A.!!$F2 1154
6 TraesCS1D01G333300 chr1A 520350643 520355220 4577 True 661.000000 1048 91.0470 1068 2138 2 chr1A.!!$R1 1070
7 TraesCS1D01G333300 chr2D 508076701 508077462 761 False 839.000000 839 87.0300 51 796 1 chr2D.!!$F2 745
8 TraesCS1D01G333300 chr2A 18074950 18075602 652 False 826.000000 826 89.8640 1 644 1 chr2A.!!$F1 643
9 TraesCS1D01G333300 chr1B 573568502 573569849 1347 False 653.500000 710 87.3530 993 2149 2 chr1B.!!$F1 1156
10 TraesCS1D01G333300 chr7D 591972202 591973686 1484 True 493.500000 660 86.9695 51 766 2 chr7D.!!$R2 715
11 TraesCS1D01G333300 chr3D 202380005 202381482 1477 False 465.000000 656 84.8400 51 766 2 chr3D.!!$F3 715
12 TraesCS1D01G333300 chr3D 573870791 573872510 1719 True 420.500000 562 85.5920 994 2138 2 chr3D.!!$R3 1144
13 TraesCS1D01G333300 chr3A 708931755 708933588 1833 True 407.000000 551 86.0870 1029 2138 2 chr3A.!!$R1 1109
14 TraesCS1D01G333300 chr3B 763260397 763263125 2728 False 415.000000 545 85.5105 994 2138 2 chr3B.!!$F1 1144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 1710 0.038892 GCCCACTTGTTGTCTGCATG 60.039 55.0 0.0 0.0 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2797 11007 0.040514 TTGCGCAAAGACATCAACCG 60.041 50.0 22.78 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.799753 CGATTTCTGGTGCCGAGG 58.200 61.111 0.00 0.00 0.00 4.63
33 34 3.777910 GGGCCTCGCGTTTCCCTA 61.778 66.667 19.65 0.00 35.87 3.53
104 105 1.669760 GTGGAAATGTCGGGCGTCA 60.670 57.895 0.00 0.00 0.00 4.35
640 1485 8.349568 AGGTTGATTTGGATAAGTTAGGAAAC 57.650 34.615 0.00 0.00 35.72 2.78
661 1506 8.175716 GGAAACTTAGATCCGTTATCTTTTGTG 58.824 37.037 3.16 0.00 42.62 3.33
662 1507 8.617290 AAACTTAGATCCGTTATCTTTTGTGT 57.383 30.769 3.16 0.00 42.62 3.72
674 1519 8.339714 CGTTATCTTTTGTGTGTTAGGAAAGAA 58.660 33.333 0.00 0.00 39.10 2.52
790 1644 1.553706 AGACCGTACCAGGTTACCAG 58.446 55.000 3.51 0.00 46.09 4.00
796 1650 1.350019 GTACCAGGTTACCAGGTGCTT 59.650 52.381 25.84 3.96 43.38 3.91
797 1651 0.400594 ACCAGGTTACCAGGTGCTTC 59.599 55.000 17.89 0.00 41.96 3.86
798 1652 0.673644 CCAGGTTACCAGGTGCTTCG 60.674 60.000 0.76 0.00 0.00 3.79
799 1653 0.320374 CAGGTTACCAGGTGCTTCGA 59.680 55.000 0.76 0.00 0.00 3.71
800 1654 0.608640 AGGTTACCAGGTGCTTCGAG 59.391 55.000 0.76 0.00 0.00 4.04
801 1655 0.320697 GGTTACCAGGTGCTTCGAGT 59.679 55.000 0.76 0.00 0.00 4.18
802 1656 1.547372 GGTTACCAGGTGCTTCGAGTA 59.453 52.381 0.76 0.00 0.00 2.59
803 1657 2.416972 GGTTACCAGGTGCTTCGAGTAG 60.417 54.545 0.76 0.00 0.00 2.57
804 1658 2.490903 GTTACCAGGTGCTTCGAGTAGA 59.509 50.000 0.76 0.00 0.00 2.59
805 1659 1.178276 ACCAGGTGCTTCGAGTAGAG 58.822 55.000 0.00 0.00 0.00 2.43
806 1660 1.271982 ACCAGGTGCTTCGAGTAGAGA 60.272 52.381 0.00 0.00 0.00 3.10
807 1661 2.028130 CCAGGTGCTTCGAGTAGAGAT 58.972 52.381 0.00 0.00 0.00 2.75
808 1662 3.215151 CCAGGTGCTTCGAGTAGAGATA 58.785 50.000 0.00 0.00 0.00 1.98
809 1663 3.823873 CCAGGTGCTTCGAGTAGAGATAT 59.176 47.826 0.00 0.00 0.00 1.63
810 1664 5.004448 CCAGGTGCTTCGAGTAGAGATATA 58.996 45.833 0.00 0.00 0.00 0.86
811 1665 5.473846 CCAGGTGCTTCGAGTAGAGATATAA 59.526 44.000 0.00 0.00 0.00 0.98
812 1666 6.375377 CAGGTGCTTCGAGTAGAGATATAAC 58.625 44.000 0.00 0.00 0.00 1.89
813 1667 6.017026 CAGGTGCTTCGAGTAGAGATATAACA 60.017 42.308 0.00 0.00 0.00 2.41
814 1668 6.546403 AGGTGCTTCGAGTAGAGATATAACAA 59.454 38.462 0.00 0.00 0.00 2.83
815 1669 6.637658 GGTGCTTCGAGTAGAGATATAACAAC 59.362 42.308 0.00 0.00 0.00 3.32
816 1670 6.357503 GTGCTTCGAGTAGAGATATAACAACG 59.642 42.308 0.00 0.00 0.00 4.10
817 1671 6.259387 TGCTTCGAGTAGAGATATAACAACGA 59.741 38.462 0.00 0.00 0.00 3.85
818 1672 6.574462 GCTTCGAGTAGAGATATAACAACGAC 59.426 42.308 0.00 0.00 0.00 4.34
819 1673 7.518689 GCTTCGAGTAGAGATATAACAACGACT 60.519 40.741 0.00 0.00 0.00 4.18
820 1674 7.175073 TCGAGTAGAGATATAACAACGACTG 57.825 40.000 0.00 0.00 0.00 3.51
821 1675 6.760298 TCGAGTAGAGATATAACAACGACTGT 59.240 38.462 0.00 0.00 41.27 3.55
823 1677 7.583401 CGAGTAGAGATATAACAACGACTGTTC 59.417 40.741 10.22 0.00 45.50 3.18
824 1678 7.705214 AGTAGAGATATAACAACGACTGTTCC 58.295 38.462 10.22 1.73 45.50 3.62
825 1679 5.579718 AGAGATATAACAACGACTGTTCCG 58.420 41.667 10.22 0.00 45.50 4.30
826 1680 5.356190 AGAGATATAACAACGACTGTTCCGA 59.644 40.000 10.22 0.40 45.50 4.55
827 1681 6.039493 AGAGATATAACAACGACTGTTCCGAT 59.961 38.462 10.22 3.54 45.50 4.18
828 1682 7.228108 AGAGATATAACAACGACTGTTCCGATA 59.772 37.037 10.22 5.25 45.50 2.92
829 1683 7.709947 AGATATAACAACGACTGTTCCGATAA 58.290 34.615 10.22 0.00 45.50 1.75
830 1684 8.358148 AGATATAACAACGACTGTTCCGATAAT 58.642 33.333 10.22 2.41 45.50 1.28
831 1685 6.823678 ATAACAACGACTGTTCCGATAATC 57.176 37.500 10.22 0.00 45.50 1.75
832 1686 4.451629 ACAACGACTGTTCCGATAATCT 57.548 40.909 0.00 0.00 35.72 2.40
833 1687 4.174009 ACAACGACTGTTCCGATAATCTG 58.826 43.478 0.00 0.00 35.72 2.90
834 1688 3.438297 ACGACTGTTCCGATAATCTGG 57.562 47.619 0.00 0.00 0.00 3.86
835 1689 2.758979 ACGACTGTTCCGATAATCTGGT 59.241 45.455 0.00 0.00 0.00 4.00
836 1690 3.116300 CGACTGTTCCGATAATCTGGTG 58.884 50.000 0.00 0.00 0.00 4.17
837 1691 3.458189 GACTGTTCCGATAATCTGGTGG 58.542 50.000 0.00 0.00 0.00 4.61
838 1692 2.213499 CTGTTCCGATAATCTGGTGGC 58.787 52.381 0.00 0.00 0.00 5.01
839 1693 1.134220 TGTTCCGATAATCTGGTGGCC 60.134 52.381 0.00 0.00 0.00 5.36
840 1694 0.472471 TTCCGATAATCTGGTGGCCC 59.528 55.000 0.00 0.00 0.00 5.80
841 1695 0.692756 TCCGATAATCTGGTGGCCCA 60.693 55.000 0.00 0.00 38.87 5.36
842 1696 0.535102 CCGATAATCTGGTGGCCCAC 60.535 60.000 4.93 4.93 35.17 4.61
843 1697 0.469917 CGATAATCTGGTGGCCCACT 59.530 55.000 14.71 0.00 35.17 4.00
844 1698 1.134098 CGATAATCTGGTGGCCCACTT 60.134 52.381 14.71 2.37 35.17 3.16
845 1699 2.301346 GATAATCTGGTGGCCCACTTG 58.699 52.381 14.71 7.06 35.17 3.16
846 1700 1.072266 TAATCTGGTGGCCCACTTGT 58.928 50.000 14.71 0.00 35.17 3.16
847 1701 0.188342 AATCTGGTGGCCCACTTGTT 59.812 50.000 14.71 1.38 35.17 2.83
848 1702 0.540365 ATCTGGTGGCCCACTTGTTG 60.540 55.000 14.71 0.18 35.17 3.33
849 1703 1.455587 CTGGTGGCCCACTTGTTGT 60.456 57.895 14.71 0.00 35.17 3.32
850 1704 1.454847 TGGTGGCCCACTTGTTGTC 60.455 57.895 14.71 0.00 35.17 3.18
851 1705 1.152756 GGTGGCCCACTTGTTGTCT 60.153 57.895 14.71 0.00 34.40 3.41
852 1706 1.455383 GGTGGCCCACTTGTTGTCTG 61.455 60.000 14.71 0.00 34.40 3.51
853 1707 1.827789 TGGCCCACTTGTTGTCTGC 60.828 57.895 0.00 0.00 0.00 4.26
854 1708 1.827789 GGCCCACTTGTTGTCTGCA 60.828 57.895 0.00 0.00 0.00 4.41
855 1709 1.181098 GGCCCACTTGTTGTCTGCAT 61.181 55.000 0.00 0.00 0.00 3.96
856 1710 0.038892 GCCCACTTGTTGTCTGCATG 60.039 55.000 0.00 0.00 0.00 4.06
857 1711 0.038892 CCCACTTGTTGTCTGCATGC 60.039 55.000 11.82 11.82 0.00 4.06
858 1712 0.386352 CCACTTGTTGTCTGCATGCG 60.386 55.000 14.09 8.20 0.00 4.73
859 1713 0.308684 CACTTGTTGTCTGCATGCGT 59.691 50.000 14.09 0.00 0.00 5.24
860 1714 1.024271 ACTTGTTGTCTGCATGCGTT 58.976 45.000 14.09 0.00 0.00 4.84
861 1715 2.032117 CACTTGTTGTCTGCATGCGTTA 60.032 45.455 14.09 0.00 0.00 3.18
862 1716 2.616376 ACTTGTTGTCTGCATGCGTTAA 59.384 40.909 14.09 2.79 0.00 2.01
863 1717 3.066064 ACTTGTTGTCTGCATGCGTTAAA 59.934 39.130 14.09 2.30 0.00 1.52
864 1718 3.266541 TGTTGTCTGCATGCGTTAAAG 57.733 42.857 14.09 4.27 0.00 1.85
865 1719 2.616376 TGTTGTCTGCATGCGTTAAAGT 59.384 40.909 14.09 0.00 0.00 2.66
866 1720 2.967459 TGTCTGCATGCGTTAAAGTG 57.033 45.000 14.09 0.00 0.00 3.16
867 1721 2.488952 TGTCTGCATGCGTTAAAGTGA 58.511 42.857 14.09 0.00 0.00 3.41
868 1722 2.875317 TGTCTGCATGCGTTAAAGTGAA 59.125 40.909 14.09 0.00 0.00 3.18
869 1723 3.313803 TGTCTGCATGCGTTAAAGTGAAA 59.686 39.130 14.09 0.00 0.00 2.69
870 1724 3.664025 GTCTGCATGCGTTAAAGTGAAAC 59.336 43.478 14.09 0.00 0.00 2.78
903 1757 7.834803 TGGAAACATTATTATTGTCATGCACA 58.165 30.769 0.00 0.00 33.40 4.57
904 1758 8.476447 TGGAAACATTATTATTGTCATGCACAT 58.524 29.630 0.00 0.00 31.61 3.21
905 1759 8.757789 GGAAACATTATTATTGTCATGCACATG 58.242 33.333 4.18 4.18 40.09 3.21
906 1760 7.703298 AACATTATTATTGTCATGCACATGC 57.297 32.000 5.73 0.00 38.65 4.06
907 1761 5.916320 ACATTATTATTGTCATGCACATGCG 59.084 36.000 5.73 0.00 45.83 4.73
908 1762 2.191815 TTATTGTCATGCACATGCGC 57.808 45.000 0.00 0.00 45.83 6.09
910 1764 0.457166 ATTGTCATGCACATGCGCAC 60.457 50.000 14.90 0.00 46.56 5.34
911 1765 2.202518 GTCATGCACATGCGCACC 60.203 61.111 14.90 1.65 46.56 5.01
912 1766 3.801971 TCATGCACATGCGCACCG 61.802 61.111 14.90 10.19 46.56 4.94
913 1767 4.105733 CATGCACATGCGCACCGT 62.106 61.111 14.90 11.00 46.56 4.83
914 1768 3.803082 ATGCACATGCGCACCGTC 61.803 61.111 14.90 8.13 46.56 4.79
916 1770 4.450122 GCACATGCGCACCGTCAG 62.450 66.667 14.90 3.35 0.00 3.51
917 1771 4.450122 CACATGCGCACCGTCAGC 62.450 66.667 14.90 0.00 0.00 4.26
918 1772 4.687215 ACATGCGCACCGTCAGCT 62.687 61.111 14.90 0.00 0.00 4.24
919 1773 3.425713 CATGCGCACCGTCAGCTT 61.426 61.111 14.90 0.00 0.00 3.74
920 1774 3.425713 ATGCGCACCGTCAGCTTG 61.426 61.111 14.90 0.00 0.00 4.01
924 1778 4.077188 GCACCGTCAGCTTGCGTC 62.077 66.667 6.03 0.00 0.00 5.19
925 1779 3.414700 CACCGTCAGCTTGCGTCC 61.415 66.667 6.03 0.00 0.00 4.79
926 1780 3.616721 ACCGTCAGCTTGCGTCCT 61.617 61.111 6.03 0.00 0.00 3.85
927 1781 3.114616 CCGTCAGCTTGCGTCCTG 61.115 66.667 6.03 0.00 0.00 3.86
928 1782 3.114616 CGTCAGCTTGCGTCCTGG 61.115 66.667 0.00 0.00 0.00 4.45
929 1783 2.343758 GTCAGCTTGCGTCCTGGA 59.656 61.111 0.00 0.00 0.00 3.86
930 1784 2.029844 GTCAGCTTGCGTCCTGGAC 61.030 63.158 16.99 16.99 0.00 4.02
931 1785 2.210013 TCAGCTTGCGTCCTGGACT 61.210 57.895 23.49 1.65 0.00 3.85
932 1786 1.739562 CAGCTTGCGTCCTGGACTC 60.740 63.158 23.49 16.99 0.00 3.36
933 1787 2.435059 GCTTGCGTCCTGGACTCC 60.435 66.667 23.49 14.79 0.00 3.85
934 1788 2.266055 CTTGCGTCCTGGACTCCC 59.734 66.667 23.49 12.49 0.00 4.30
935 1789 2.525629 TTGCGTCCTGGACTCCCA 60.526 61.111 23.49 14.73 40.95 4.37
936 1790 2.788191 CTTGCGTCCTGGACTCCCAC 62.788 65.000 23.49 9.01 37.58 4.61
937 1791 3.311110 GCGTCCTGGACTCCCACA 61.311 66.667 23.49 0.00 37.58 4.17
938 1792 2.879233 GCGTCCTGGACTCCCACAA 61.879 63.158 23.49 0.00 37.58 3.33
939 1793 1.004918 CGTCCTGGACTCCCACAAC 60.005 63.158 23.49 0.00 37.58 3.32
940 1794 1.472662 CGTCCTGGACTCCCACAACT 61.473 60.000 23.49 0.00 37.58 3.16
941 1795 0.321996 GTCCTGGACTCCCACAACTC 59.678 60.000 19.53 0.00 37.58 3.01
942 1796 0.105194 TCCTGGACTCCCACAACTCA 60.105 55.000 0.00 0.00 37.58 3.41
943 1797 0.322975 CCTGGACTCCCACAACTCAG 59.677 60.000 0.00 0.00 37.58 3.35
944 1798 0.321122 CTGGACTCCCACAACTCAGC 60.321 60.000 0.00 0.00 37.58 4.26
945 1799 1.003233 GGACTCCCACAACTCAGCC 60.003 63.158 0.00 0.00 0.00 4.85
946 1800 1.754745 GACTCCCACAACTCAGCCA 59.245 57.895 0.00 0.00 0.00 4.75
947 1801 0.321122 GACTCCCACAACTCAGCCAG 60.321 60.000 0.00 0.00 0.00 4.85
948 1802 1.673665 CTCCCACAACTCAGCCAGC 60.674 63.158 0.00 0.00 0.00 4.85
949 1803 2.113774 CCCACAACTCAGCCAGCA 59.886 61.111 0.00 0.00 0.00 4.41
950 1804 2.263741 CCCACAACTCAGCCAGCAC 61.264 63.158 0.00 0.00 0.00 4.40
951 1805 1.526686 CCACAACTCAGCCAGCACA 60.527 57.895 0.00 0.00 0.00 4.57
952 1806 1.512996 CCACAACTCAGCCAGCACAG 61.513 60.000 0.00 0.00 0.00 3.66
953 1807 1.895707 ACAACTCAGCCAGCACAGC 60.896 57.895 0.00 0.00 0.00 4.40
954 1808 1.895231 CAACTCAGCCAGCACAGCA 60.895 57.895 0.00 0.00 0.00 4.41
955 1809 1.895707 AACTCAGCCAGCACAGCAC 60.896 57.895 0.00 0.00 0.00 4.40
956 1810 3.420606 CTCAGCCAGCACAGCACG 61.421 66.667 0.00 0.00 0.00 5.34
957 1811 4.240103 TCAGCCAGCACAGCACGT 62.240 61.111 0.00 0.00 0.00 4.49
958 1812 3.720193 CAGCCAGCACAGCACGTC 61.720 66.667 0.00 0.00 0.00 4.34
959 1813 4.240103 AGCCAGCACAGCACGTCA 62.240 61.111 0.00 0.00 0.00 4.35
960 1814 3.720193 GCCAGCACAGCACGTCAG 61.720 66.667 0.00 0.00 0.00 3.51
961 1815 3.720193 CCAGCACAGCACGTCAGC 61.720 66.667 0.00 0.00 0.00 4.26
962 1816 2.968697 CAGCACAGCACGTCAGCA 60.969 61.111 0.36 0.00 36.85 4.41
963 1817 2.969238 AGCACAGCACGTCAGCAC 60.969 61.111 0.36 0.00 36.85 4.40
964 1818 4.017877 GCACAGCACGTCAGCACC 62.018 66.667 0.36 0.00 36.85 5.01
965 1819 2.280389 CACAGCACGTCAGCACCT 60.280 61.111 0.36 0.00 36.85 4.00
966 1820 1.006220 CACAGCACGTCAGCACCTA 60.006 57.895 0.36 0.00 36.85 3.08
967 1821 1.006102 ACAGCACGTCAGCACCTAC 60.006 57.895 0.36 0.00 36.85 3.18
968 1822 1.738099 CAGCACGTCAGCACCTACC 60.738 63.158 0.36 0.00 36.85 3.18
969 1823 1.908793 AGCACGTCAGCACCTACCT 60.909 57.895 0.36 0.00 36.85 3.08
970 1824 0.611062 AGCACGTCAGCACCTACCTA 60.611 55.000 0.36 0.00 36.85 3.08
971 1825 0.245539 GCACGTCAGCACCTACCTAA 59.754 55.000 0.00 0.00 0.00 2.69
972 1826 1.337447 GCACGTCAGCACCTACCTAAA 60.337 52.381 0.00 0.00 0.00 1.85
973 1827 2.334838 CACGTCAGCACCTACCTAAAC 58.665 52.381 0.00 0.00 0.00 2.01
974 1828 1.068055 ACGTCAGCACCTACCTAAACG 60.068 52.381 0.00 0.00 35.20 3.60
975 1829 1.356938 GTCAGCACCTACCTAAACGC 58.643 55.000 0.00 0.00 0.00 4.84
976 1830 0.970640 TCAGCACCTACCTAAACGCA 59.029 50.000 0.00 0.00 0.00 5.24
977 1831 1.067142 TCAGCACCTACCTAAACGCAG 60.067 52.381 0.00 0.00 0.00 5.18
978 1832 0.249398 AGCACCTACCTAAACGCAGG 59.751 55.000 0.00 0.00 41.87 4.85
979 1833 0.248289 GCACCTACCTAAACGCAGGA 59.752 55.000 5.39 0.00 39.18 3.86
980 1834 1.739371 GCACCTACCTAAACGCAGGAG 60.739 57.143 5.39 0.00 39.18 3.69
981 1835 1.134788 CACCTACCTAAACGCAGGAGG 60.135 57.143 5.39 9.28 39.18 4.30
982 1836 0.464452 CCTACCTAAACGCAGGAGGG 59.536 60.000 5.39 3.51 39.18 4.30
983 1837 1.481871 CTACCTAAACGCAGGAGGGA 58.518 55.000 5.39 0.00 39.18 4.20
984 1838 1.829222 CTACCTAAACGCAGGAGGGAA 59.171 52.381 5.39 0.00 39.18 3.97
985 1839 0.613777 ACCTAAACGCAGGAGGGAAG 59.386 55.000 5.39 0.00 39.18 3.46
986 1840 0.107654 CCTAAACGCAGGAGGGAAGG 60.108 60.000 0.00 0.00 38.00 3.46
987 1841 0.902531 CTAAACGCAGGAGGGAAGGA 59.097 55.000 0.00 0.00 0.00 3.36
988 1842 0.611714 TAAACGCAGGAGGGAAGGAC 59.388 55.000 0.00 0.00 0.00 3.85
989 1843 1.415672 AAACGCAGGAGGGAAGGACA 61.416 55.000 0.00 0.00 0.00 4.02
990 1844 1.831652 AACGCAGGAGGGAAGGACAG 61.832 60.000 0.00 0.00 0.00 3.51
991 1845 1.984570 CGCAGGAGGGAAGGACAGA 60.985 63.158 0.00 0.00 0.00 3.41
1006 1860 1.611491 GACAGAGAGGACCGATGGATC 59.389 57.143 0.00 0.00 0.00 3.36
1197 3916 2.403378 GCTGCTCGACTCGGAGTCT 61.403 63.158 29.59 2.15 42.92 3.24
1262 3981 0.251634 GGCTTCTTCCAGGTCAGGAG 59.748 60.000 0.00 0.00 39.25 3.69
1263 3982 0.251634 GCTTCTTCCAGGTCAGGAGG 59.748 60.000 0.26 0.00 39.25 4.30
1302 9004 7.627298 TTCTTCGCATATATAGAGGGAGTAC 57.373 40.000 5.34 0.00 0.00 2.73
1839 9811 3.790437 CGGCCTGCAGGTGAGGAT 61.790 66.667 32.81 0.00 37.57 3.24
2152 10129 3.071837 TGTGGCGTAGGATGGCGA 61.072 61.111 0.00 0.00 31.47 5.54
2321 10301 0.618968 GGAGAGCCTCCCTTTCCTGA 60.619 60.000 9.46 0.00 44.36 3.86
2322 10302 0.539518 GAGAGCCTCCCTTTCCTGAC 59.460 60.000 0.00 0.00 0.00 3.51
2355 10565 1.073216 CGTGTAGTGCCTCTTGAGCG 61.073 60.000 0.00 0.00 0.00 5.03
2357 10567 1.153549 GTAGTGCCTCTTGAGCGGG 60.154 63.158 0.00 0.00 0.00 6.13
2358 10568 1.304962 TAGTGCCTCTTGAGCGGGA 60.305 57.895 0.00 0.00 0.00 5.14
2359 10569 0.902984 TAGTGCCTCTTGAGCGGGAA 60.903 55.000 0.00 0.00 0.00 3.97
2361 10571 0.889186 GTGCCTCTTGAGCGGGAAAA 60.889 55.000 0.00 0.00 0.00 2.29
2362 10572 0.038166 TGCCTCTTGAGCGGGAAAAT 59.962 50.000 0.00 0.00 0.00 1.82
2363 10573 1.280710 TGCCTCTTGAGCGGGAAAATA 59.719 47.619 0.00 0.00 0.00 1.40
2365 10575 2.939640 GCCTCTTGAGCGGGAAAATACA 60.940 50.000 0.00 0.00 0.00 2.29
2366 10576 2.678336 CCTCTTGAGCGGGAAAATACAC 59.322 50.000 0.00 0.00 0.00 2.90
2367 10577 3.600388 CTCTTGAGCGGGAAAATACACT 58.400 45.455 0.00 0.00 0.00 3.55
2368 10578 4.003648 CTCTTGAGCGGGAAAATACACTT 58.996 43.478 0.00 0.00 0.00 3.16
2369 10579 4.394729 TCTTGAGCGGGAAAATACACTTT 58.605 39.130 0.00 0.00 0.00 2.66
2370 10580 4.215399 TCTTGAGCGGGAAAATACACTTTG 59.785 41.667 0.00 0.00 0.00 2.77
2371 10581 3.745799 TGAGCGGGAAAATACACTTTGA 58.254 40.909 0.00 0.00 0.00 2.69
2372 10582 4.331968 TGAGCGGGAAAATACACTTTGAT 58.668 39.130 0.00 0.00 0.00 2.57
2373 10583 4.764823 TGAGCGGGAAAATACACTTTGATT 59.235 37.500 0.00 0.00 0.00 2.57
2374 10584 5.242838 TGAGCGGGAAAATACACTTTGATTT 59.757 36.000 0.00 0.00 0.00 2.17
2375 10585 5.709966 AGCGGGAAAATACACTTTGATTTC 58.290 37.500 0.00 0.00 0.00 2.17
2376 10586 5.476945 AGCGGGAAAATACACTTTGATTTCT 59.523 36.000 0.00 0.00 32.14 2.52
2377 10587 5.572896 GCGGGAAAATACACTTTGATTTCTG 59.427 40.000 0.00 0.00 32.14 3.02
2378 10588 6.092748 CGGGAAAATACACTTTGATTTCTGG 58.907 40.000 0.00 0.00 32.14 3.86
2379 10589 6.294508 CGGGAAAATACACTTTGATTTCTGGT 60.295 38.462 0.00 0.00 32.14 4.00
2380 10590 7.441836 GGGAAAATACACTTTGATTTCTGGTT 58.558 34.615 0.00 0.00 32.14 3.67
2381 10591 7.384932 GGGAAAATACACTTTGATTTCTGGTTG 59.615 37.037 0.00 0.00 32.14 3.77
2382 10592 7.926018 GGAAAATACACTTTGATTTCTGGTTGT 59.074 33.333 0.00 0.00 32.14 3.32
2383 10593 9.959749 GAAAATACACTTTGATTTCTGGTTGTA 57.040 29.630 0.00 0.00 0.00 2.41
2449 10659 9.936759 TTTTTGATTAAACTCTTGGTCAAAACT 57.063 25.926 9.73 0.00 42.06 2.66
2479 10689 8.776680 TTAGATTAAACTTGACTTTGTTTCGC 57.223 30.769 0.00 0.00 37.53 4.70
2480 10690 6.791303 AGATTAAACTTGACTTTGTTTCGCA 58.209 32.000 0.00 0.00 37.53 5.10
2481 10691 6.691388 AGATTAAACTTGACTTTGTTTCGCAC 59.309 34.615 0.00 0.00 37.53 5.34
2482 10692 4.434713 AAACTTGACTTTGTTTCGCACT 57.565 36.364 0.00 0.00 31.65 4.40
2483 10693 4.434713 AACTTGACTTTGTTTCGCACTT 57.565 36.364 0.00 0.00 0.00 3.16
2484 10694 3.758300 ACTTGACTTTGTTTCGCACTTG 58.242 40.909 0.00 0.00 0.00 3.16
2485 10695 3.190535 ACTTGACTTTGTTTCGCACTTGT 59.809 39.130 0.00 0.00 0.00 3.16
2486 10696 4.393680 ACTTGACTTTGTTTCGCACTTGTA 59.606 37.500 0.00 0.00 0.00 2.41
2487 10697 5.065988 ACTTGACTTTGTTTCGCACTTGTAT 59.934 36.000 0.00 0.00 0.00 2.29
2488 10698 6.259167 ACTTGACTTTGTTTCGCACTTGTATA 59.741 34.615 0.00 0.00 0.00 1.47
2489 10699 6.795098 TGACTTTGTTTCGCACTTGTATAT 57.205 33.333 0.00 0.00 0.00 0.86
2490 10700 7.892778 TGACTTTGTTTCGCACTTGTATATA 57.107 32.000 0.00 0.00 0.00 0.86
2491 10701 8.312896 TGACTTTGTTTCGCACTTGTATATAA 57.687 30.769 0.00 0.00 0.00 0.98
2492 10702 8.775527 TGACTTTGTTTCGCACTTGTATATAAA 58.224 29.630 0.00 0.00 0.00 1.40
2493 10703 9.769093 GACTTTGTTTCGCACTTGTATATAAAT 57.231 29.630 0.00 0.00 0.00 1.40
2500 10710 8.814733 TTCGCACTTGTATATAAATTTTCACG 57.185 30.769 0.00 0.00 0.00 4.35
2501 10711 8.187354 TCGCACTTGTATATAAATTTTCACGA 57.813 30.769 0.00 0.00 0.00 4.35
2502 10712 8.657729 TCGCACTTGTATATAAATTTTCACGAA 58.342 29.630 0.00 0.00 0.00 3.85
2503 10713 9.268255 CGCACTTGTATATAAATTTTCACGAAA 57.732 29.630 0.00 0.00 0.00 3.46
2516 10726 9.842444 AAATTTTCACGAAAATAACGAACATTG 57.158 25.926 16.03 0.00 46.76 2.82
2517 10727 8.789881 ATTTTCACGAAAATAACGAACATTGA 57.210 26.923 14.53 0.00 45.93 2.57
2518 10728 7.597643 TTTCACGAAAATAACGAACATTGAC 57.402 32.000 0.00 0.00 34.70 3.18
2519 10729 6.533819 TCACGAAAATAACGAACATTGACT 57.466 33.333 0.00 0.00 34.70 3.41
2520 10730 6.950545 TCACGAAAATAACGAACATTGACTT 58.049 32.000 0.00 0.00 34.70 3.01
2521 10731 7.067116 TCACGAAAATAACGAACATTGACTTC 58.933 34.615 0.00 0.00 34.70 3.01
2522 10732 6.848800 CACGAAAATAACGAACATTGACTTCA 59.151 34.615 0.00 0.00 34.70 3.02
2523 10733 7.058354 CACGAAAATAACGAACATTGACTTCAG 59.942 37.037 0.00 0.00 34.70 3.02
2524 10734 6.519761 CGAAAATAACGAACATTGACTTCAGG 59.480 38.462 0.00 0.00 0.00 3.86
2525 10735 5.880054 AATAACGAACATTGACTTCAGGG 57.120 39.130 0.00 0.00 0.00 4.45
2526 10736 1.523758 ACGAACATTGACTTCAGGGC 58.476 50.000 0.00 0.00 0.00 5.19
2527 10737 1.202758 ACGAACATTGACTTCAGGGCA 60.203 47.619 0.00 0.00 0.00 5.36
2528 10738 1.466167 CGAACATTGACTTCAGGGCAG 59.534 52.381 0.00 0.00 32.68 4.85
2529 10739 2.783135 GAACATTGACTTCAGGGCAGA 58.217 47.619 0.00 0.00 32.68 4.26
2530 10740 2.957402 ACATTGACTTCAGGGCAGAA 57.043 45.000 0.00 0.00 32.68 3.02
2531 10741 3.228188 ACATTGACTTCAGGGCAGAAA 57.772 42.857 0.00 0.00 32.68 2.52
2532 10742 3.565307 ACATTGACTTCAGGGCAGAAAA 58.435 40.909 0.00 0.00 32.68 2.29
2533 10743 3.571401 ACATTGACTTCAGGGCAGAAAAG 59.429 43.478 0.00 0.00 32.68 2.27
2534 10744 3.576078 TTGACTTCAGGGCAGAAAAGA 57.424 42.857 0.00 0.00 32.68 2.52
2535 10745 2.851195 TGACTTCAGGGCAGAAAAGAC 58.149 47.619 0.00 0.00 0.00 3.01
2536 10746 2.172505 TGACTTCAGGGCAGAAAAGACA 59.827 45.455 0.00 0.00 0.00 3.41
2537 10747 3.214328 GACTTCAGGGCAGAAAAGACAA 58.786 45.455 0.00 0.00 0.00 3.18
2538 10748 3.631250 ACTTCAGGGCAGAAAAGACAAA 58.369 40.909 0.00 0.00 0.00 2.83
2539 10749 4.218312 ACTTCAGGGCAGAAAAGACAAAT 58.782 39.130 0.00 0.00 0.00 2.32
2540 10750 4.651045 ACTTCAGGGCAGAAAAGACAAATT 59.349 37.500 0.00 0.00 0.00 1.82
2541 10751 5.129320 ACTTCAGGGCAGAAAAGACAAATTT 59.871 36.000 0.00 0.00 0.00 1.82
2542 10752 6.323739 ACTTCAGGGCAGAAAAGACAAATTTA 59.676 34.615 0.00 0.00 0.00 1.40
2543 10753 6.916360 TCAGGGCAGAAAAGACAAATTTAT 57.084 33.333 0.00 0.00 0.00 1.40
2544 10754 7.301868 TCAGGGCAGAAAAGACAAATTTATT 57.698 32.000 0.00 0.00 0.00 1.40
2545 10755 7.734942 TCAGGGCAGAAAAGACAAATTTATTT 58.265 30.769 0.00 0.00 0.00 1.40
2546 10756 8.865090 TCAGGGCAGAAAAGACAAATTTATTTA 58.135 29.630 0.00 0.00 0.00 1.40
2547 10757 8.925700 CAGGGCAGAAAAGACAAATTTATTTAC 58.074 33.333 0.00 0.00 0.00 2.01
2548 10758 8.870116 AGGGCAGAAAAGACAAATTTATTTACT 58.130 29.630 0.00 0.00 0.00 2.24
2595 10805 7.907214 AGGTCACTATTCACACTATTTTGAC 57.093 36.000 0.00 0.00 0.00 3.18
2596 10806 7.073342 GGTCACTATTCACACTATTTTGACC 57.927 40.000 0.00 0.00 42.64 4.02
2597 10807 6.183360 GGTCACTATTCACACTATTTTGACCG 60.183 42.308 0.00 0.00 40.70 4.79
2598 10808 6.588756 GTCACTATTCACACTATTTTGACCGA 59.411 38.462 0.00 0.00 0.00 4.69
2599 10809 7.117236 GTCACTATTCACACTATTTTGACCGAA 59.883 37.037 0.00 0.00 0.00 4.30
2600 10810 7.658167 TCACTATTCACACTATTTTGACCGAAA 59.342 33.333 0.00 0.00 0.00 3.46
2601 10811 8.286800 CACTATTCACACTATTTTGACCGAAAA 58.713 33.333 0.00 0.00 37.93 2.29
2602 10812 8.842280 ACTATTCACACTATTTTGACCGAAAAA 58.158 29.630 0.00 0.00 37.10 1.94
2603 10813 9.840427 CTATTCACACTATTTTGACCGAAAAAT 57.160 29.630 8.02 8.02 41.45 1.82
2607 10817 9.834628 TCACACTATTTTGACCGAAAAATTATC 57.165 29.630 8.17 0.00 39.73 1.75
2608 10818 9.840427 CACACTATTTTGACCGAAAAATTATCT 57.160 29.630 8.17 0.00 39.73 1.98
2680 10890 9.256228 TCTCACAAGTATAATAGAAGGTCAAGT 57.744 33.333 0.00 0.00 0.00 3.16
2681 10891 9.877178 CTCACAAGTATAATAGAAGGTCAAGTT 57.123 33.333 0.00 0.00 0.00 2.66
2771 10981 4.708576 TGTACATACACCCAGAAACCAA 57.291 40.909 0.00 0.00 0.00 3.67
2772 10982 5.050126 TGTACATACACCCAGAAACCAAA 57.950 39.130 0.00 0.00 0.00 3.28
2773 10983 4.822896 TGTACATACACCCAGAAACCAAAC 59.177 41.667 0.00 0.00 0.00 2.93
2774 10984 2.882137 ACATACACCCAGAAACCAAACG 59.118 45.455 0.00 0.00 0.00 3.60
2775 10985 2.713863 TACACCCAGAAACCAAACGT 57.286 45.000 0.00 0.00 0.00 3.99
2776 10986 1.842052 ACACCCAGAAACCAAACGTT 58.158 45.000 0.00 0.00 35.70 3.99
2777 10987 1.746787 ACACCCAGAAACCAAACGTTC 59.253 47.619 0.00 0.00 31.78 3.95
2778 10988 1.066454 CACCCAGAAACCAAACGTTCC 59.934 52.381 0.00 0.00 31.78 3.62
2779 10989 0.671796 CCCAGAAACCAAACGTTCCC 59.328 55.000 0.00 0.00 31.78 3.97
2780 10990 0.309612 CCAGAAACCAAACGTTCCCG 59.690 55.000 0.00 0.00 40.83 5.14
2789 10999 3.057337 ACGTTCCCGTCCCTCTTG 58.943 61.111 0.00 0.00 46.28 3.02
2790 11000 1.532316 ACGTTCCCGTCCCTCTTGA 60.532 57.895 0.00 0.00 46.28 3.02
2791 11001 1.215647 CGTTCCCGTCCCTCTTGAG 59.784 63.158 0.00 0.00 0.00 3.02
2792 11002 1.079057 GTTCCCGTCCCTCTTGAGC 60.079 63.158 0.00 0.00 0.00 4.26
2793 11003 2.646175 TTCCCGTCCCTCTTGAGCG 61.646 63.158 0.00 0.00 0.00 5.03
2794 11004 4.148825 CCCGTCCCTCTTGAGCGG 62.149 72.222 7.78 7.78 41.82 5.52
2795 11005 3.068691 CCGTCCCTCTTGAGCGGA 61.069 66.667 8.73 6.56 44.57 5.54
2796 11006 2.492090 CGTCCCTCTTGAGCGGAG 59.508 66.667 7.70 0.00 0.00 4.63
2809 11019 4.598257 CGGAGCGGTTGATGTCTT 57.402 55.556 0.00 0.00 0.00 3.01
2810 11020 2.840974 CGGAGCGGTTGATGTCTTT 58.159 52.632 0.00 0.00 0.00 2.52
2811 11021 0.443869 CGGAGCGGTTGATGTCTTTG 59.556 55.000 0.00 0.00 0.00 2.77
2812 11022 0.169009 GGAGCGGTTGATGTCTTTGC 59.831 55.000 0.00 0.00 0.00 3.68
2813 11023 0.179215 GAGCGGTTGATGTCTTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
2814 11024 1.797537 GCGGTTGATGTCTTTGCGC 60.798 57.895 0.00 0.00 0.00 6.09
2815 11025 1.573932 CGGTTGATGTCTTTGCGCA 59.426 52.632 5.66 5.66 0.00 6.09
2841 11051 2.355363 TCGTCTTGGCGTTGTCCG 60.355 61.111 0.00 0.00 40.40 4.79
2855 11065 1.735386 TGTCCGTGACGTTTTGGAAA 58.265 45.000 3.64 0.00 34.95 3.13
2897 11107 2.047179 GGAAGAGCACCACCGGAC 60.047 66.667 9.46 0.00 0.00 4.79
2912 11122 4.368543 GACGGGAAGGACGCCGTT 62.369 66.667 0.00 0.00 42.38 4.44
2913 11123 2.990967 ACGGGAAGGACGCCGTTA 60.991 61.111 0.00 0.00 40.61 3.18
2939 11149 1.891150 GACTGAACGGAGGGAGTAACA 59.109 52.381 0.00 0.00 0.00 2.41
2972 11182 6.673154 ATATTTACGGTGTTAGTTGAAGCC 57.327 37.500 0.00 0.00 0.00 4.35
3004 11214 3.450817 ACACATCACCATGTCCGATCTAA 59.549 43.478 0.00 0.00 41.69 2.10
3008 11218 2.632996 TCACCATGTCCGATCTAATCCC 59.367 50.000 0.00 0.00 0.00 3.85
3009 11219 1.618837 ACCATGTCCGATCTAATCCCG 59.381 52.381 0.00 0.00 0.00 5.14
3010 11220 1.673033 CCATGTCCGATCTAATCCCGC 60.673 57.143 0.00 0.00 0.00 6.13
3011 11221 0.243907 ATGTCCGATCTAATCCCGCG 59.756 55.000 0.00 0.00 0.00 6.46
3012 11222 1.105167 TGTCCGATCTAATCCCGCGT 61.105 55.000 4.92 0.00 0.00 6.01
3013 11223 0.877071 GTCCGATCTAATCCCGCGTA 59.123 55.000 4.92 0.00 0.00 4.42
3014 11224 1.135746 GTCCGATCTAATCCCGCGTAG 60.136 57.143 4.92 0.00 0.00 3.51
3015 11225 1.162698 CCGATCTAATCCCGCGTAGA 58.837 55.000 4.92 5.95 0.00 2.59
3016 11226 1.130749 CCGATCTAATCCCGCGTAGAG 59.869 57.143 4.92 0.00 30.11 2.43
3017 11227 1.466024 CGATCTAATCCCGCGTAGAGC 60.466 57.143 4.92 7.52 43.95 4.09
3036 11246 3.131478 GCGGCGCTACCAACCAAT 61.131 61.111 26.86 0.00 39.03 3.16
3037 11247 2.791256 CGGCGCTACCAACCAATG 59.209 61.111 7.64 0.00 39.03 2.82
3045 11255 3.286407 CCAACCAATGGCGATGCA 58.714 55.556 0.00 0.00 43.80 3.96
3046 11256 1.590665 CCAACCAATGGCGATGCAA 59.409 52.632 0.00 0.00 43.80 4.08
3047 11257 0.176219 CCAACCAATGGCGATGCAAT 59.824 50.000 0.00 0.00 43.80 3.56
3048 11258 1.563111 CAACCAATGGCGATGCAATC 58.437 50.000 0.00 0.00 40.89 2.67
3068 11278 3.636231 CCGGCCCTGGTGTCAAGA 61.636 66.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.510918 GTAGGGAAACGCGAGGCC 60.511 66.667 15.93 10.43 0.00 5.19
19 20 0.739813 CTTGGTAGGGAAACGCGAGG 60.740 60.000 15.93 0.00 0.00 4.63
20 21 0.245539 TCTTGGTAGGGAAACGCGAG 59.754 55.000 15.93 0.00 0.00 5.03
28 29 1.212688 CACCATGCATCTTGGTAGGGA 59.787 52.381 10.10 0.00 45.71 4.20
32 33 0.330941 TGCCACCATGCATCTTGGTA 59.669 50.000 19.80 14.83 45.71 3.25
49 50 0.254178 TCAATCCCTCCAAGCTCTGC 59.746 55.000 0.00 0.00 0.00 4.26
168 984 1.461075 CCATCCCTCCTCCTCCTGG 60.461 68.421 0.00 0.00 0.00 4.45
640 1485 7.596749 ACACACAAAAGATAACGGATCTAAG 57.403 36.000 2.84 0.27 44.68 2.18
651 1496 8.974060 AGTTCTTTCCTAACACACAAAAGATA 57.026 30.769 0.00 0.00 36.25 1.98
729 1574 1.536418 CCACCACCTCTCCCACTGA 60.536 63.158 0.00 0.00 0.00 3.41
772 1626 0.533951 CCTGGTAACCTGGTACGGTC 59.466 60.000 0.00 0.00 37.76 4.79
784 1638 2.753452 CTCTACTCGAAGCACCTGGTAA 59.247 50.000 0.00 0.00 0.00 2.85
790 1644 6.315091 TGTTATATCTCTACTCGAAGCACC 57.685 41.667 0.00 0.00 0.00 5.01
796 1650 6.760298 ACAGTCGTTGTTATATCTCTACTCGA 59.240 38.462 0.00 0.00 36.31 4.04
797 1651 6.946165 ACAGTCGTTGTTATATCTCTACTCG 58.054 40.000 0.00 0.00 36.31 4.18
811 1665 4.174009 CAGATTATCGGAACAGTCGTTGT 58.826 43.478 0.00 0.00 43.45 3.32
812 1666 3.551890 CCAGATTATCGGAACAGTCGTTG 59.448 47.826 0.00 0.00 34.75 4.10
813 1667 3.194968 ACCAGATTATCGGAACAGTCGTT 59.805 43.478 9.37 0.00 38.33 3.85
814 1668 2.758979 ACCAGATTATCGGAACAGTCGT 59.241 45.455 9.37 0.00 0.00 4.34
815 1669 3.116300 CACCAGATTATCGGAACAGTCG 58.884 50.000 9.37 0.00 0.00 4.18
816 1670 3.458189 CCACCAGATTATCGGAACAGTC 58.542 50.000 9.37 0.00 0.00 3.51
817 1671 2.420129 GCCACCAGATTATCGGAACAGT 60.420 50.000 9.37 0.00 0.00 3.55
818 1672 2.213499 GCCACCAGATTATCGGAACAG 58.787 52.381 9.37 0.00 0.00 3.16
819 1673 1.134220 GGCCACCAGATTATCGGAACA 60.134 52.381 0.00 0.00 0.00 3.18
820 1674 1.594331 GGCCACCAGATTATCGGAAC 58.406 55.000 0.00 0.60 0.00 3.62
821 1675 0.472471 GGGCCACCAGATTATCGGAA 59.528 55.000 4.39 0.00 36.50 4.30
822 1676 0.692756 TGGGCCACCAGATTATCGGA 60.693 55.000 0.00 0.00 43.37 4.55
823 1677 1.836391 TGGGCCACCAGATTATCGG 59.164 57.895 0.00 2.49 43.37 4.18
832 1686 1.454847 GACAACAAGTGGGCCACCA 60.455 57.895 32.30 0.00 46.94 4.17
833 1687 1.152756 AGACAACAAGTGGGCCACC 60.153 57.895 32.30 15.43 34.49 4.61
834 1688 2.032981 CAGACAACAAGTGGGCCAC 58.967 57.895 29.32 29.32 34.10 5.01
835 1689 1.827789 GCAGACAACAAGTGGGCCA 60.828 57.895 0.00 0.00 0.00 5.36
836 1690 1.181098 ATGCAGACAACAAGTGGGCC 61.181 55.000 0.00 0.00 0.00 5.80
837 1691 0.038892 CATGCAGACAACAAGTGGGC 60.039 55.000 0.00 0.00 0.00 5.36
838 1692 0.038892 GCATGCAGACAACAAGTGGG 60.039 55.000 14.21 0.00 0.00 4.61
839 1693 0.386352 CGCATGCAGACAACAAGTGG 60.386 55.000 19.57 0.00 0.00 4.00
840 1694 0.308684 ACGCATGCAGACAACAAGTG 59.691 50.000 19.57 0.00 0.00 3.16
841 1695 1.024271 AACGCATGCAGACAACAAGT 58.976 45.000 19.57 0.41 0.00 3.16
842 1696 2.967459 TAACGCATGCAGACAACAAG 57.033 45.000 19.57 0.00 0.00 3.16
843 1697 3.066064 ACTTTAACGCATGCAGACAACAA 59.934 39.130 19.57 0.00 0.00 2.83
844 1698 2.616376 ACTTTAACGCATGCAGACAACA 59.384 40.909 19.57 0.00 0.00 3.33
845 1699 2.973224 CACTTTAACGCATGCAGACAAC 59.027 45.455 19.57 0.00 0.00 3.32
846 1700 2.875317 TCACTTTAACGCATGCAGACAA 59.125 40.909 19.57 3.90 0.00 3.18
847 1701 2.488952 TCACTTTAACGCATGCAGACA 58.511 42.857 19.57 0.00 0.00 3.41
848 1702 3.536158 TTCACTTTAACGCATGCAGAC 57.464 42.857 19.57 0.00 0.00 3.51
849 1703 3.563808 AGTTTCACTTTAACGCATGCAGA 59.436 39.130 19.57 0.00 0.00 4.26
850 1704 3.665409 CAGTTTCACTTTAACGCATGCAG 59.335 43.478 19.57 12.98 0.00 4.41
851 1705 3.313803 TCAGTTTCACTTTAACGCATGCA 59.686 39.130 19.57 0.00 0.00 3.96
852 1706 3.884169 TCAGTTTCACTTTAACGCATGC 58.116 40.909 7.91 7.91 0.00 4.06
853 1707 5.741510 TGTTTCAGTTTCACTTTAACGCATG 59.258 36.000 0.00 0.00 0.00 4.06
854 1708 5.885881 TGTTTCAGTTTCACTTTAACGCAT 58.114 33.333 0.00 0.00 0.00 4.73
855 1709 5.298197 TGTTTCAGTTTCACTTTAACGCA 57.702 34.783 0.00 0.00 0.00 5.24
856 1710 5.173131 CCATGTTTCAGTTTCACTTTAACGC 59.827 40.000 0.00 0.00 0.00 4.84
857 1711 6.491394 TCCATGTTTCAGTTTCACTTTAACG 58.509 36.000 0.00 0.00 0.00 3.18
858 1712 8.592155 GTTTCCATGTTTCAGTTTCACTTTAAC 58.408 33.333 0.00 0.00 0.00 2.01
859 1713 8.307483 TGTTTCCATGTTTCAGTTTCACTTTAA 58.693 29.630 0.00 0.00 0.00 1.52
860 1714 7.831753 TGTTTCCATGTTTCAGTTTCACTTTA 58.168 30.769 0.00 0.00 0.00 1.85
861 1715 6.696411 TGTTTCCATGTTTCAGTTTCACTTT 58.304 32.000 0.00 0.00 0.00 2.66
862 1716 6.279513 TGTTTCCATGTTTCAGTTTCACTT 57.720 33.333 0.00 0.00 0.00 3.16
863 1717 5.913137 TGTTTCCATGTTTCAGTTTCACT 57.087 34.783 0.00 0.00 0.00 3.41
864 1718 8.816640 ATAATGTTTCCATGTTTCAGTTTCAC 57.183 30.769 0.00 0.00 0.00 3.18
874 1728 9.316730 GCATGACAATAATAATGTTTCCATGTT 57.683 29.630 0.00 0.00 35.04 2.71
875 1729 8.476447 TGCATGACAATAATAATGTTTCCATGT 58.524 29.630 0.00 0.00 35.04 3.21
876 1730 8.757789 GTGCATGACAATAATAATGTTTCCATG 58.242 33.333 0.00 0.00 35.38 3.66
877 1731 8.476447 TGTGCATGACAATAATAATGTTTCCAT 58.524 29.630 0.00 0.00 0.00 3.41
878 1732 7.834803 TGTGCATGACAATAATAATGTTTCCA 58.165 30.769 0.00 0.00 0.00 3.53
879 1733 8.757789 CATGTGCATGACAATAATAATGTTTCC 58.242 33.333 6.32 0.00 41.20 3.13
880 1734 8.270799 GCATGTGCATGACAATAATAATGTTTC 58.729 33.333 15.53 0.00 41.20 2.78
881 1735 7.043258 CGCATGTGCATGACAATAATAATGTTT 60.043 33.333 15.53 0.00 41.20 2.83
882 1736 6.418523 CGCATGTGCATGACAATAATAATGTT 59.581 34.615 15.53 0.00 41.20 2.71
883 1737 5.916320 CGCATGTGCATGACAATAATAATGT 59.084 36.000 15.53 0.00 41.20 2.71
884 1738 5.164129 GCGCATGTGCATGACAATAATAATG 60.164 40.000 25.87 0.00 41.20 1.90
885 1739 4.919168 GCGCATGTGCATGACAATAATAAT 59.081 37.500 25.87 0.00 41.20 1.28
886 1740 4.201990 TGCGCATGTGCATGACAATAATAA 60.202 37.500 29.26 2.24 40.62 1.40
887 1741 3.314635 TGCGCATGTGCATGACAATAATA 59.685 39.130 29.26 2.46 40.62 0.98
888 1742 2.099427 TGCGCATGTGCATGACAATAAT 59.901 40.909 29.26 0.00 40.62 1.28
889 1743 1.471684 TGCGCATGTGCATGACAATAA 59.528 42.857 29.26 3.81 40.62 1.40
890 1744 1.093159 TGCGCATGTGCATGACAATA 58.907 45.000 29.26 4.60 40.62 1.90
891 1745 1.884444 TGCGCATGTGCATGACAAT 59.116 47.368 29.26 0.00 40.62 2.71
892 1746 3.352524 TGCGCATGTGCATGACAA 58.647 50.000 29.26 6.20 40.62 3.18
899 1753 4.450122 CTGACGGTGCGCATGTGC 62.450 66.667 24.25 24.25 37.78 4.57
900 1754 4.450122 GCTGACGGTGCGCATGTG 62.450 66.667 20.92 13.07 0.00 3.21
901 1755 4.687215 AGCTGACGGTGCGCATGT 62.687 61.111 15.91 16.45 35.28 3.21
902 1756 3.425713 AAGCTGACGGTGCGCATG 61.426 61.111 15.91 12.72 35.28 4.06
903 1757 3.425713 CAAGCTGACGGTGCGCAT 61.426 61.111 15.91 0.00 35.28 4.73
907 1761 4.077188 GACGCAAGCTGACGGTGC 62.077 66.667 12.65 5.49 45.62 5.01
908 1762 3.414700 GGACGCAAGCTGACGGTG 61.415 66.667 12.65 0.00 45.62 4.94
909 1763 3.616721 AGGACGCAAGCTGACGGT 61.617 61.111 12.65 0.00 45.62 4.83
910 1764 3.114616 CAGGACGCAAGCTGACGG 61.115 66.667 12.65 0.00 45.62 4.79
911 1765 3.114616 CCAGGACGCAAGCTGACG 61.115 66.667 7.07 7.07 45.62 4.35
912 1766 2.029844 GTCCAGGACGCAAGCTGAC 61.030 63.158 3.05 0.00 45.62 3.51
913 1767 2.159819 GAGTCCAGGACGCAAGCTGA 62.160 60.000 17.95 0.00 45.62 4.26
914 1768 1.739562 GAGTCCAGGACGCAAGCTG 60.740 63.158 17.95 0.00 45.62 4.24
915 1769 2.659610 GAGTCCAGGACGCAAGCT 59.340 61.111 17.95 0.00 45.62 3.74
916 1770 2.435059 GGAGTCCAGGACGCAAGC 60.435 66.667 23.36 4.15 45.62 4.01
917 1771 2.583441 TGGGAGTCCAGGACGCAAG 61.583 63.158 23.36 0.00 38.32 4.01
918 1772 2.525629 TGGGAGTCCAGGACGCAA 60.526 61.111 23.36 9.45 38.32 4.85
919 1773 3.311110 GTGGGAGTCCAGGACGCA 61.311 66.667 23.36 9.01 45.05 5.24
920 1774 2.879233 TTGTGGGAGTCCAGGACGC 61.879 63.158 14.81 14.81 45.05 5.19
921 1775 1.004918 GTTGTGGGAGTCCAGGACG 60.005 63.158 14.32 0.00 45.05 4.79
922 1776 0.321996 GAGTTGTGGGAGTCCAGGAC 59.678 60.000 12.25 12.25 45.05 3.85
923 1777 0.105194 TGAGTTGTGGGAGTCCAGGA 60.105 55.000 12.30 0.00 45.05 3.86
924 1778 0.322975 CTGAGTTGTGGGAGTCCAGG 59.677 60.000 12.30 0.00 45.05 4.45
925 1779 0.321122 GCTGAGTTGTGGGAGTCCAG 60.321 60.000 12.30 0.00 45.05 3.86
926 1780 1.754745 GCTGAGTTGTGGGAGTCCA 59.245 57.895 12.30 0.00 41.58 4.02
927 1781 1.003233 GGCTGAGTTGTGGGAGTCC 60.003 63.158 0.00 0.00 0.00 3.85
928 1782 0.321122 CTGGCTGAGTTGTGGGAGTC 60.321 60.000 0.00 0.00 0.00 3.36
929 1783 1.757306 CTGGCTGAGTTGTGGGAGT 59.243 57.895 0.00 0.00 0.00 3.85
930 1784 1.673665 GCTGGCTGAGTTGTGGGAG 60.674 63.158 0.00 0.00 0.00 4.30
931 1785 2.431683 GCTGGCTGAGTTGTGGGA 59.568 61.111 0.00 0.00 0.00 4.37
932 1786 2.113774 TGCTGGCTGAGTTGTGGG 59.886 61.111 0.00 0.00 0.00 4.61
933 1787 1.512996 CTGTGCTGGCTGAGTTGTGG 61.513 60.000 0.00 0.00 0.00 4.17
934 1788 1.947013 CTGTGCTGGCTGAGTTGTG 59.053 57.895 0.00 0.00 0.00 3.33
935 1789 1.895707 GCTGTGCTGGCTGAGTTGT 60.896 57.895 0.00 0.00 0.00 3.32
936 1790 1.895231 TGCTGTGCTGGCTGAGTTG 60.895 57.895 0.00 0.00 0.00 3.16
937 1791 1.895707 GTGCTGTGCTGGCTGAGTT 60.896 57.895 0.00 0.00 0.00 3.01
938 1792 2.281345 GTGCTGTGCTGGCTGAGT 60.281 61.111 0.00 0.00 0.00 3.41
939 1793 3.420606 CGTGCTGTGCTGGCTGAG 61.421 66.667 0.00 0.00 0.00 3.35
940 1794 4.240103 ACGTGCTGTGCTGGCTGA 62.240 61.111 0.00 0.00 0.00 4.26
941 1795 3.720193 GACGTGCTGTGCTGGCTG 61.720 66.667 0.00 0.00 0.00 4.85
942 1796 4.240103 TGACGTGCTGTGCTGGCT 62.240 61.111 0.00 0.00 0.00 4.75
943 1797 3.720193 CTGACGTGCTGTGCTGGC 61.720 66.667 0.00 0.00 0.00 4.85
944 1798 3.720193 GCTGACGTGCTGTGCTGG 61.720 66.667 0.00 0.00 0.00 4.85
945 1799 2.968697 TGCTGACGTGCTGTGCTG 60.969 61.111 0.00 0.00 0.00 4.41
946 1800 2.969238 GTGCTGACGTGCTGTGCT 60.969 61.111 0.00 0.00 0.00 4.40
947 1801 4.017877 GGTGCTGACGTGCTGTGC 62.018 66.667 0.00 0.00 0.00 4.57
948 1802 1.006220 TAGGTGCTGACGTGCTGTG 60.006 57.895 0.00 0.00 0.00 3.66
949 1803 1.006102 GTAGGTGCTGACGTGCTGT 60.006 57.895 0.00 0.00 0.00 4.40
950 1804 1.738099 GGTAGGTGCTGACGTGCTG 60.738 63.158 0.00 0.00 0.00 4.41
951 1805 0.611062 TAGGTAGGTGCTGACGTGCT 60.611 55.000 0.00 0.00 0.00 4.40
952 1806 0.245539 TTAGGTAGGTGCTGACGTGC 59.754 55.000 0.00 0.00 0.00 5.34
953 1807 2.334838 GTTTAGGTAGGTGCTGACGTG 58.665 52.381 0.00 0.00 0.00 4.49
954 1808 1.068055 CGTTTAGGTAGGTGCTGACGT 60.068 52.381 0.00 0.00 0.00 4.34
955 1809 1.625616 CGTTTAGGTAGGTGCTGACG 58.374 55.000 0.00 0.00 0.00 4.35
956 1810 1.337447 TGCGTTTAGGTAGGTGCTGAC 60.337 52.381 0.00 0.00 0.00 3.51
957 1811 0.970640 TGCGTTTAGGTAGGTGCTGA 59.029 50.000 0.00 0.00 0.00 4.26
958 1812 1.359848 CTGCGTTTAGGTAGGTGCTG 58.640 55.000 0.00 0.00 0.00 4.41
959 1813 0.249398 CCTGCGTTTAGGTAGGTGCT 59.751 55.000 0.00 0.00 35.34 4.40
960 1814 0.248289 TCCTGCGTTTAGGTAGGTGC 59.752 55.000 6.49 0.00 40.32 5.01
961 1815 1.134788 CCTCCTGCGTTTAGGTAGGTG 60.135 57.143 6.49 4.59 40.32 4.00
962 1816 1.192428 CCTCCTGCGTTTAGGTAGGT 58.808 55.000 6.49 0.00 40.32 3.08
963 1817 0.464452 CCCTCCTGCGTTTAGGTAGG 59.536 60.000 0.79 0.79 40.74 3.18
964 1818 1.481871 TCCCTCCTGCGTTTAGGTAG 58.518 55.000 0.00 0.00 38.99 3.18
965 1819 1.829222 CTTCCCTCCTGCGTTTAGGTA 59.171 52.381 0.00 0.00 38.99 3.08
966 1820 0.613777 CTTCCCTCCTGCGTTTAGGT 59.386 55.000 0.00 0.00 38.99 3.08
967 1821 0.107654 CCTTCCCTCCTGCGTTTAGG 60.108 60.000 0.00 0.00 39.29 2.69
968 1822 0.902531 TCCTTCCCTCCTGCGTTTAG 59.097 55.000 0.00 0.00 0.00 1.85
969 1823 0.611714 GTCCTTCCCTCCTGCGTTTA 59.388 55.000 0.00 0.00 0.00 2.01
970 1824 1.375326 GTCCTTCCCTCCTGCGTTT 59.625 57.895 0.00 0.00 0.00 3.60
971 1825 1.831652 CTGTCCTTCCCTCCTGCGTT 61.832 60.000 0.00 0.00 0.00 4.84
972 1826 2.203788 TGTCCTTCCCTCCTGCGT 60.204 61.111 0.00 0.00 0.00 5.24
973 1827 1.954362 CTCTGTCCTTCCCTCCTGCG 61.954 65.000 0.00 0.00 0.00 5.18
974 1828 0.616111 TCTCTGTCCTTCCCTCCTGC 60.616 60.000 0.00 0.00 0.00 4.85
975 1829 1.484038 CTCTCTGTCCTTCCCTCCTG 58.516 60.000 0.00 0.00 0.00 3.86
976 1830 0.338120 CCTCTCTGTCCTTCCCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
977 1831 0.336737 TCCTCTCTGTCCTTCCCTCC 59.663 60.000 0.00 0.00 0.00 4.30
978 1832 1.480789 GTCCTCTCTGTCCTTCCCTC 58.519 60.000 0.00 0.00 0.00 4.30
979 1833 0.041982 GGTCCTCTCTGTCCTTCCCT 59.958 60.000 0.00 0.00 0.00 4.20
980 1834 1.324005 CGGTCCTCTCTGTCCTTCCC 61.324 65.000 0.00 0.00 0.00 3.97
981 1835 0.323542 TCGGTCCTCTCTGTCCTTCC 60.324 60.000 0.00 0.00 0.00 3.46
982 1836 1.407258 CATCGGTCCTCTCTGTCCTTC 59.593 57.143 0.00 0.00 0.00 3.46
983 1837 1.479709 CATCGGTCCTCTCTGTCCTT 58.520 55.000 0.00 0.00 0.00 3.36
984 1838 0.396417 CCATCGGTCCTCTCTGTCCT 60.396 60.000 0.00 0.00 0.00 3.85
985 1839 0.395862 TCCATCGGTCCTCTCTGTCC 60.396 60.000 0.00 0.00 0.00 4.02
986 1840 1.611491 GATCCATCGGTCCTCTCTGTC 59.389 57.143 0.00 0.00 0.00 3.51
987 1841 1.698506 GATCCATCGGTCCTCTCTGT 58.301 55.000 0.00 0.00 0.00 3.41
988 1842 0.595588 CGATCCATCGGTCCTCTCTG 59.404 60.000 0.73 0.00 45.93 3.35
989 1843 3.028916 CGATCCATCGGTCCTCTCT 57.971 57.895 0.73 0.00 45.93 3.10
1020 1874 4.083862 GCCCTGGTGAGGACGACC 62.084 72.222 0.00 0.00 42.93 4.79
1027 1881 2.060383 TGATCTCGGCCCTGGTGAG 61.060 63.158 0.00 0.00 0.00 3.51
1262 3981 5.065988 TGCGAAGAAAAGTATAAAGGATGCC 59.934 40.000 0.00 0.00 0.00 4.40
1263 3982 6.119144 TGCGAAGAAAAGTATAAAGGATGC 57.881 37.500 0.00 0.00 0.00 3.91
1302 9004 6.143496 AGAGCGTGTAGATTTGATACATACG 58.857 40.000 0.00 0.00 35.69 3.06
1456 9203 2.123033 AAGTGGTGCCCAAACCCC 60.123 61.111 0.00 0.00 39.70 4.95
2072 10049 0.912486 CCCTGTAGTTCCCCTTGAGG 59.088 60.000 0.00 0.00 0.00 3.86
2172 10149 6.506500 AGATGCTCTAACACCAAAAATCAG 57.493 37.500 0.00 0.00 0.00 2.90
2175 10152 6.899393 TGAAGATGCTCTAACACCAAAAAT 57.101 33.333 0.00 0.00 0.00 1.82
2228 10208 1.834263 ACCATTGTGTAGAGGCTCTCC 59.166 52.381 22.53 10.77 0.00 3.71
2321 10301 4.566759 CACTACACGCAGCATGTATTTAGT 59.433 41.667 0.95 0.00 39.31 2.24
2322 10302 4.550831 GCACTACACGCAGCATGTATTTAG 60.551 45.833 0.95 0.00 39.31 1.85
2355 10565 6.993079 ACCAGAAATCAAAGTGTATTTTCCC 58.007 36.000 0.00 0.00 0.00 3.97
2357 10567 8.871686 ACAACCAGAAATCAAAGTGTATTTTC 57.128 30.769 0.00 0.00 0.00 2.29
2423 10633 9.936759 AGTTTTGACCAAGAGTTTAATCAAAAA 57.063 25.926 10.54 0.00 43.68 1.94
2453 10663 9.228636 GCGAAACAAAGTCAAGTTTAATCTAAA 57.771 29.630 0.00 0.00 38.01 1.85
2454 10664 8.399425 TGCGAAACAAAGTCAAGTTTAATCTAA 58.601 29.630 0.00 0.00 38.01 2.10
2455 10665 7.853929 GTGCGAAACAAAGTCAAGTTTAATCTA 59.146 33.333 0.00 0.00 38.01 1.98
2456 10666 6.691388 GTGCGAAACAAAGTCAAGTTTAATCT 59.309 34.615 0.00 0.00 38.01 2.40
2457 10667 6.691388 AGTGCGAAACAAAGTCAAGTTTAATC 59.309 34.615 0.00 0.00 38.01 1.75
2458 10668 6.560711 AGTGCGAAACAAAGTCAAGTTTAAT 58.439 32.000 0.00 0.00 38.01 1.40
2459 10669 5.945155 AGTGCGAAACAAAGTCAAGTTTAA 58.055 33.333 0.00 0.00 38.01 1.52
2460 10670 5.554822 AGTGCGAAACAAAGTCAAGTTTA 57.445 34.783 0.00 0.00 38.01 2.01
2461 10671 4.434713 AGTGCGAAACAAAGTCAAGTTT 57.565 36.364 0.00 0.00 40.38 2.66
2462 10672 4.165779 CAAGTGCGAAACAAAGTCAAGTT 58.834 39.130 0.00 0.00 0.00 2.66
2463 10673 3.190535 ACAAGTGCGAAACAAAGTCAAGT 59.809 39.130 0.00 0.00 0.00 3.16
2464 10674 3.758300 ACAAGTGCGAAACAAAGTCAAG 58.242 40.909 0.00 0.00 0.00 3.02
2465 10675 3.840890 ACAAGTGCGAAACAAAGTCAA 57.159 38.095 0.00 0.00 0.00 3.18
2466 10676 6.795098 ATATACAAGTGCGAAACAAAGTCA 57.205 33.333 0.00 0.00 0.00 3.41
2467 10677 9.769093 ATTTATATACAAGTGCGAAACAAAGTC 57.231 29.630 0.00 0.00 0.00 3.01
2474 10684 9.268255 CGTGAAAATTTATATACAAGTGCGAAA 57.732 29.630 0.00 0.00 0.00 3.46
2475 10685 8.657729 TCGTGAAAATTTATATACAAGTGCGAA 58.342 29.630 0.00 0.00 0.00 4.70
2476 10686 8.187354 TCGTGAAAATTTATATACAAGTGCGA 57.813 30.769 0.00 0.00 0.00 5.10
2477 10687 8.814733 TTCGTGAAAATTTATATACAAGTGCG 57.185 30.769 0.00 0.00 0.00 5.34
2490 10700 9.842444 CAATGTTCGTTATTTTCGTGAAAATTT 57.158 25.926 21.64 8.18 45.67 1.82
2491 10701 9.239002 TCAATGTTCGTTATTTTCGTGAAAATT 57.761 25.926 21.64 9.47 45.67 1.82
2493 10703 7.911205 AGTCAATGTTCGTTATTTTCGTGAAAA 59.089 29.630 9.94 9.94 43.48 2.29
2494 10704 7.411274 AGTCAATGTTCGTTATTTTCGTGAAA 58.589 30.769 0.00 0.00 0.00 2.69
2495 10705 6.950545 AGTCAATGTTCGTTATTTTCGTGAA 58.049 32.000 0.00 0.00 0.00 3.18
2496 10706 6.533819 AGTCAATGTTCGTTATTTTCGTGA 57.466 33.333 0.00 0.00 0.00 4.35
2497 10707 6.848800 TGAAGTCAATGTTCGTTATTTTCGTG 59.151 34.615 0.00 0.00 0.00 4.35
2498 10708 6.950545 TGAAGTCAATGTTCGTTATTTTCGT 58.049 32.000 0.00 0.00 0.00 3.85
2499 10709 6.519761 CCTGAAGTCAATGTTCGTTATTTTCG 59.480 38.462 0.00 0.00 0.00 3.46
2500 10710 6.801862 CCCTGAAGTCAATGTTCGTTATTTTC 59.198 38.462 0.00 0.00 0.00 2.29
2501 10711 6.677913 CCCTGAAGTCAATGTTCGTTATTTT 58.322 36.000 0.00 0.00 0.00 1.82
2502 10712 5.335661 GCCCTGAAGTCAATGTTCGTTATTT 60.336 40.000 0.00 0.00 0.00 1.40
2503 10713 4.156008 GCCCTGAAGTCAATGTTCGTTATT 59.844 41.667 0.00 0.00 0.00 1.40
2504 10714 3.689649 GCCCTGAAGTCAATGTTCGTTAT 59.310 43.478 0.00 0.00 0.00 1.89
2505 10715 3.071479 GCCCTGAAGTCAATGTTCGTTA 58.929 45.455 0.00 0.00 0.00 3.18
2506 10716 1.880027 GCCCTGAAGTCAATGTTCGTT 59.120 47.619 0.00 0.00 0.00 3.85
2507 10717 1.202758 TGCCCTGAAGTCAATGTTCGT 60.203 47.619 0.00 0.00 0.00 3.85
2508 10718 1.466167 CTGCCCTGAAGTCAATGTTCG 59.534 52.381 0.00 0.00 0.00 3.95
2509 10719 2.783135 TCTGCCCTGAAGTCAATGTTC 58.217 47.619 0.00 0.00 0.00 3.18
2510 10720 2.957402 TCTGCCCTGAAGTCAATGTT 57.043 45.000 0.00 0.00 0.00 2.71
2511 10721 2.957402 TTCTGCCCTGAAGTCAATGT 57.043 45.000 0.00 0.00 0.00 2.71
2512 10722 3.822735 TCTTTTCTGCCCTGAAGTCAATG 59.177 43.478 0.00 0.00 0.00 2.82
2513 10723 3.823304 GTCTTTTCTGCCCTGAAGTCAAT 59.177 43.478 0.00 0.00 0.00 2.57
2514 10724 3.214328 GTCTTTTCTGCCCTGAAGTCAA 58.786 45.455 0.00 0.00 0.00 3.18
2515 10725 2.172505 TGTCTTTTCTGCCCTGAAGTCA 59.827 45.455 0.00 0.00 0.00 3.41
2516 10726 2.851195 TGTCTTTTCTGCCCTGAAGTC 58.149 47.619 0.00 0.00 0.00 3.01
2517 10727 3.297134 TTGTCTTTTCTGCCCTGAAGT 57.703 42.857 0.00 0.00 0.00 3.01
2518 10728 4.861102 ATTTGTCTTTTCTGCCCTGAAG 57.139 40.909 0.00 0.00 0.00 3.02
2519 10729 5.612725 AAATTTGTCTTTTCTGCCCTGAA 57.387 34.783 0.00 0.00 0.00 3.02
2520 10730 6.916360 ATAAATTTGTCTTTTCTGCCCTGA 57.084 33.333 0.00 0.00 0.00 3.86
2521 10731 7.967890 AAATAAATTTGTCTTTTCTGCCCTG 57.032 32.000 0.00 0.00 0.00 4.45
2522 10732 8.870116 AGTAAATAAATTTGTCTTTTCTGCCCT 58.130 29.630 0.00 0.00 0.00 5.19
2569 10779 9.601217 GTCAAAATAGTGTGAATAGTGACCTAT 57.399 33.333 0.00 0.00 35.33 2.57
2570 10780 8.038944 GGTCAAAATAGTGTGAATAGTGACCTA 58.961 37.037 10.91 0.00 45.82 3.08
2571 10781 6.879458 GGTCAAAATAGTGTGAATAGTGACCT 59.121 38.462 10.91 0.00 45.82 3.85
2572 10782 6.183360 CGGTCAAAATAGTGTGAATAGTGACC 60.183 42.308 8.60 8.60 45.82 4.02
2573 10783 6.588756 TCGGTCAAAATAGTGTGAATAGTGAC 59.411 38.462 0.00 0.00 33.70 3.67
2574 10784 6.693466 TCGGTCAAAATAGTGTGAATAGTGA 58.307 36.000 0.00 0.00 0.00 3.41
2575 10785 6.961359 TCGGTCAAAATAGTGTGAATAGTG 57.039 37.500 0.00 0.00 0.00 2.74
2576 10786 7.972832 TTTCGGTCAAAATAGTGTGAATAGT 57.027 32.000 0.00 0.00 0.00 2.12
2577 10787 9.840427 ATTTTTCGGTCAAAATAGTGTGAATAG 57.160 29.630 0.00 0.00 35.09 1.73
2581 10791 9.834628 GATAATTTTTCGGTCAAAATAGTGTGA 57.165 29.630 0.00 0.00 35.67 3.58
2582 10792 9.840427 AGATAATTTTTCGGTCAAAATAGTGTG 57.160 29.630 0.00 0.00 35.67 3.82
2654 10864 9.256228 ACTTGACCTTCTATTATACTTGTGAGA 57.744 33.333 0.00 0.00 0.00 3.27
2655 10865 9.877178 AACTTGACCTTCTATTATACTTGTGAG 57.123 33.333 0.00 0.00 0.00 3.51
2750 10960 4.708576 TTGGTTTCTGGGTGTATGTACA 57.291 40.909 0.00 0.00 0.00 2.90
2751 10961 4.083696 CGTTTGGTTTCTGGGTGTATGTAC 60.084 45.833 0.00 0.00 0.00 2.90
2752 10962 4.066490 CGTTTGGTTTCTGGGTGTATGTA 58.934 43.478 0.00 0.00 0.00 2.29
2753 10963 2.882137 CGTTTGGTTTCTGGGTGTATGT 59.118 45.455 0.00 0.00 0.00 2.29
2754 10964 2.882137 ACGTTTGGTTTCTGGGTGTATG 59.118 45.455 0.00 0.00 0.00 2.39
2755 10965 3.217681 ACGTTTGGTTTCTGGGTGTAT 57.782 42.857 0.00 0.00 0.00 2.29
2756 10966 2.713863 ACGTTTGGTTTCTGGGTGTA 57.286 45.000 0.00 0.00 0.00 2.90
2757 10967 1.746787 GAACGTTTGGTTTCTGGGTGT 59.253 47.619 0.46 0.00 39.50 4.16
2758 10968 1.066454 GGAACGTTTGGTTTCTGGGTG 59.934 52.381 0.46 0.00 39.50 4.61
2759 10969 1.395635 GGAACGTTTGGTTTCTGGGT 58.604 50.000 0.46 0.00 39.50 4.51
2760 10970 0.671796 GGGAACGTTTGGTTTCTGGG 59.328 55.000 0.46 0.00 39.50 4.45
2774 10984 1.079057 GCTCAAGAGGGACGGGAAC 60.079 63.158 0.00 0.00 0.00 3.62
2775 10985 2.646175 CGCTCAAGAGGGACGGGAA 61.646 63.158 8.30 0.00 43.22 3.97
2776 10986 3.068691 CGCTCAAGAGGGACGGGA 61.069 66.667 8.30 0.00 43.22 5.14
2777 10987 4.148825 CCGCTCAAGAGGGACGGG 62.149 72.222 14.84 0.00 43.22 5.28
2778 10988 3.068691 TCCGCTCAAGAGGGACGG 61.069 66.667 14.84 11.11 43.22 4.79
2779 10989 2.492090 CTCCGCTCAAGAGGGACG 59.508 66.667 14.84 2.63 43.22 4.79
2780 10990 2.185608 GCTCCGCTCAAGAGGGAC 59.814 66.667 14.84 1.77 43.22 4.46
2781 10991 3.452786 CGCTCCGCTCAAGAGGGA 61.453 66.667 14.84 10.45 44.69 4.20
2782 10992 4.521062 CCGCTCCGCTCAAGAGGG 62.521 72.222 7.13 7.13 42.33 4.30
2783 10993 3.302347 AACCGCTCCGCTCAAGAGG 62.302 63.158 0.00 0.00 39.38 3.69
2784 10994 2.097038 CAACCGCTCCGCTCAAGAG 61.097 63.158 0.00 0.00 0.00 2.85
2785 10995 1.888436 ATCAACCGCTCCGCTCAAGA 61.888 55.000 0.00 0.00 0.00 3.02
2786 10996 1.448540 ATCAACCGCTCCGCTCAAG 60.449 57.895 0.00 0.00 0.00 3.02
2787 10997 1.741401 CATCAACCGCTCCGCTCAA 60.741 57.895 0.00 0.00 0.00 3.02
2788 10998 2.125552 CATCAACCGCTCCGCTCA 60.126 61.111 0.00 0.00 0.00 4.26
2789 10999 2.125512 ACATCAACCGCTCCGCTC 60.126 61.111 0.00 0.00 0.00 5.03
2790 11000 2.125512 GACATCAACCGCTCCGCT 60.126 61.111 0.00 0.00 0.00 5.52
2791 11001 1.298859 AAAGACATCAACCGCTCCGC 61.299 55.000 0.00 0.00 0.00 5.54
2792 11002 0.443869 CAAAGACATCAACCGCTCCG 59.556 55.000 0.00 0.00 0.00 4.63
2793 11003 0.169009 GCAAAGACATCAACCGCTCC 59.831 55.000 0.00 0.00 0.00 4.70
2794 11004 0.179215 CGCAAAGACATCAACCGCTC 60.179 55.000 0.00 0.00 0.00 5.03
2795 11005 1.868997 CGCAAAGACATCAACCGCT 59.131 52.632 0.00 0.00 0.00 5.52
2796 11006 1.797537 GCGCAAAGACATCAACCGC 60.798 57.895 0.30 0.00 0.00 5.68
2797 11007 0.040514 TTGCGCAAAGACATCAACCG 60.041 50.000 22.78 0.00 0.00 4.44
2798 11008 2.132740 TTTGCGCAAAGACATCAACC 57.867 45.000 30.63 0.00 0.00 3.77
2841 11051 0.593008 GGCCGTTTCCAAAACGTCAC 60.593 55.000 19.78 11.02 41.64 3.67
2870 11080 0.179184 GTGCTCTTCCTCTCGTCGAC 60.179 60.000 5.18 5.18 0.00 4.20
2911 11121 1.228831 TCCGTTCAGTCCCCGGTAA 60.229 57.895 0.00 0.00 42.30 2.85
2912 11122 1.679977 CTCCGTTCAGTCCCCGGTA 60.680 63.158 0.00 0.00 42.30 4.02
2913 11123 2.995574 CTCCGTTCAGTCCCCGGT 60.996 66.667 0.00 0.00 42.30 5.28
2939 11149 9.895138 ACTAACACCGTAAATATAACCAAGAAT 57.105 29.630 0.00 0.00 0.00 2.40
2972 11182 3.412981 TGGTGATGTGTTTTTCGTGTG 57.587 42.857 0.00 0.00 0.00 3.82
3019 11229 3.131478 ATTGGTTGGTAGCGCCGC 61.131 61.111 2.29 0.00 41.21 6.53
3020 11230 2.760159 CCATTGGTTGGTAGCGCCG 61.760 63.158 2.29 0.00 40.99 6.46
3021 11231 3.196648 CCATTGGTTGGTAGCGCC 58.803 61.111 2.29 0.00 40.99 6.53
3029 11239 1.563111 GATTGCATCGCCATTGGTTG 58.437 50.000 4.26 1.67 0.00 3.77
3030 11240 0.101040 CGATTGCATCGCCATTGGTT 59.899 50.000 4.26 0.00 46.55 3.67
3031 11241 1.729276 CGATTGCATCGCCATTGGT 59.271 52.632 4.26 0.00 46.55 3.67
3032 11242 4.620437 CGATTGCATCGCCATTGG 57.380 55.556 0.00 0.00 46.55 3.16
3051 11261 3.636231 TCTTGACACCAGGGCCGG 61.636 66.667 12.04 12.04 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.