Multiple sequence alignment - TraesCS1D01G332900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G332900 chr1D 100.000 9390 0 0 1 9390 423249918 423259307 0.000000e+00 17341.0
1 TraesCS1D01G332900 chr1D 93.333 105 4 2 3216 3318 483953774 483953877 1.630000e-32 152.0
2 TraesCS1D01G332900 chr1D 88.542 96 10 1 5769 5864 211689136 211689230 2.140000e-21 115.0
3 TraesCS1D01G332900 chr1A 96.603 4533 94 18 1579 6091 519253365 519257857 0.000000e+00 7463.0
4 TraesCS1D01G332900 chr1A 94.878 2538 68 21 6091 8619 519257959 519260443 0.000000e+00 3910.0
5 TraesCS1D01G332900 chr1A 92.193 1614 48 20 1 1581 519251770 519253338 0.000000e+00 2211.0
6 TraesCS1D01G332900 chr1A 88.542 96 10 1 5769 5864 267148640 267148734 2.140000e-21 115.0
7 TraesCS1D01G332900 chr1B 94.332 2823 86 25 3106 5908 572526589 572529357 0.000000e+00 4259.0
8 TraesCS1D01G332900 chr1B 95.090 1609 61 13 7032 8632 572531786 572533384 0.000000e+00 2518.0
9 TraesCS1D01G332900 chr1B 93.703 1461 44 20 1580 3025 572524734 572526161 0.000000e+00 2145.0
10 TraesCS1D01G332900 chr1B 95.124 1292 46 7 306 1581 572523416 572524706 0.000000e+00 2021.0
11 TraesCS1D01G332900 chr1B 96.329 1144 31 9 5910 7050 572529456 572530591 0.000000e+00 1869.0
12 TraesCS1D01G332900 chr1B 92.135 267 6 7 1 263 572522947 572523202 6.930000e-96 363.0
13 TraesCS1D01G332900 chr1B 84.507 142 14 5 2332 2473 119126417 119126550 5.920000e-27 134.0
14 TraesCS1D01G332900 chr1B 88.542 96 10 1 5769 5864 305171692 305171598 2.140000e-21 115.0
15 TraesCS1D01G332900 chr6B 87.070 727 89 5 8663 9388 334449954 334450676 0.000000e+00 817.0
16 TraesCS1D01G332900 chr3D 84.225 729 108 7 8663 9388 70283177 70283901 0.000000e+00 702.0
17 TraesCS1D01G332900 chr3B 83.539 729 114 6 8664 9388 531398077 531397351 0.000000e+00 676.0
18 TraesCS1D01G332900 chr2B 83.034 725 114 9 8666 9388 207108848 207108131 0.000000e+00 649.0
19 TraesCS1D01G332900 chr2B 92.683 82 6 0 2689 2770 748978121 748978202 1.660000e-22 119.0
20 TraesCS1D01G332900 chr5B 82.143 728 127 3 8662 9388 310019916 310020641 1.040000e-173 621.0
21 TraesCS1D01G332900 chr5B 81.931 725 126 5 8666 9388 531701134 531700413 8.060000e-170 608.0
22 TraesCS1D01G332900 chr5B 81.756 729 127 6 8662 9388 703182190 703181466 1.040000e-168 604.0
23 TraesCS1D01G332900 chr5B 79.762 252 50 1 4028 4278 60794546 60794295 2.080000e-41 182.0
24 TraesCS1D01G332900 chr5B 91.346 104 6 2 3216 3317 479726896 479726998 1.270000e-28 139.0
25 TraesCS1D01G332900 chr5B 83.007 153 15 5 2332 2473 291786854 291787006 2.750000e-25 128.0
26 TraesCS1D01G332900 chr7D 80.775 723 131 8 8666 9385 508340481 508341198 8.240000e-155 558.0
27 TraesCS1D01G332900 chr7D 80.153 131 25 1 2341 2470 311269545 311269415 7.760000e-16 97.1
28 TraesCS1D01G332900 chr6A 79.558 724 137 10 8666 9385 546036853 546037569 3.030000e-139 507.0
29 TraesCS1D01G332900 chr6A 92.683 82 6 0 2689 2770 504315501 504315582 1.660000e-22 119.0
30 TraesCS1D01G332900 chr5D 80.556 252 48 1 4028 4278 57847452 57847703 9.620000e-45 193.0
31 TraesCS1D01G332900 chr5D 92.308 104 5 2 3216 3317 399614583 399614685 2.730000e-30 145.0
32 TraesCS1D01G332900 chr5D 83.803 142 15 5 2332 2473 5794790 5794923 2.750000e-25 128.0
33 TraesCS1D01G332900 chr5D 80.645 155 16 11 2332 2473 552050127 552050280 3.590000e-19 108.0
34 TraesCS1D01G332900 chr5D 100.000 31 0 0 3181 3211 209318247 209318217 3.660000e-04 58.4
35 TraesCS1D01G332900 chr5A 80.556 252 48 1 4028 4278 45986157 45986408 9.620000e-45 193.0
36 TraesCS1D01G332900 chr5A 87.129 101 12 1 3220 3320 270189135 270189036 7.710000e-21 113.0
37 TraesCS1D01G332900 chr4A 80.632 253 46 3 4028 4278 564654239 564653988 9.620000e-45 193.0
38 TraesCS1D01G332900 chr3A 93.137 102 6 1 3216 3317 675873120 675873020 2.110000e-31 148.0
39 TraesCS1D01G332900 chr2D 92.233 103 5 2 3216 3316 337850147 337850046 9.830000e-30 143.0
40 TraesCS1D01G332900 chr2D 90.385 104 7 2 3216 3317 122866814 122866712 5.920000e-27 134.0
41 TraesCS1D01G332900 chr2D 80.986 142 24 2 2332 2473 218770830 218770692 9.970000e-20 110.0
42 TraesCS1D01G332900 chr2D 80.986 142 24 2 2332 2473 343107882 343107744 9.970000e-20 110.0
43 TraesCS1D01G332900 chr2D 88.764 89 10 0 2688 2776 532674874 532674786 9.970000e-20 110.0
44 TraesCS1D01G332900 chr7B 91.089 101 7 2 3218 3317 5919495 5919594 1.640000e-27 135.0
45 TraesCS1D01G332900 chr2A 90.722 97 9 0 2689 2785 462313519 462313615 7.650000e-26 130.0
46 TraesCS1D01G332900 chr2A 89.888 89 7 2 2689 2776 8629592 8629505 7.710000e-21 113.0
47 TraesCS1D01G332900 chr4D 93.902 82 5 0 2689 2770 319247783 319247864 3.560000e-24 124.0
48 TraesCS1D01G332900 chr4D 87.879 99 11 1 2692 2790 280308919 280308822 2.140000e-21 115.0
49 TraesCS1D01G332900 chr7A 80.882 136 26 0 2335 2470 360613347 360613212 3.590000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G332900 chr1D 423249918 423259307 9389 False 17341.000000 17341 100.000000 1 9390 1 chr1D.!!$F2 9389
1 TraesCS1D01G332900 chr1A 519251770 519260443 8673 False 4528.000000 7463 94.558000 1 8619 3 chr1A.!!$F2 8618
2 TraesCS1D01G332900 chr1B 572522947 572533384 10437 False 2195.833333 4259 94.452167 1 8632 6 chr1B.!!$F2 8631
3 TraesCS1D01G332900 chr6B 334449954 334450676 722 False 817.000000 817 87.070000 8663 9388 1 chr6B.!!$F1 725
4 TraesCS1D01G332900 chr3D 70283177 70283901 724 False 702.000000 702 84.225000 8663 9388 1 chr3D.!!$F1 725
5 TraesCS1D01G332900 chr3B 531397351 531398077 726 True 676.000000 676 83.539000 8664 9388 1 chr3B.!!$R1 724
6 TraesCS1D01G332900 chr2B 207108131 207108848 717 True 649.000000 649 83.034000 8666 9388 1 chr2B.!!$R1 722
7 TraesCS1D01G332900 chr5B 310019916 310020641 725 False 621.000000 621 82.143000 8662 9388 1 chr5B.!!$F2 726
8 TraesCS1D01G332900 chr5B 531700413 531701134 721 True 608.000000 608 81.931000 8666 9388 1 chr5B.!!$R2 722
9 TraesCS1D01G332900 chr5B 703181466 703182190 724 True 604.000000 604 81.756000 8662 9388 1 chr5B.!!$R3 726
10 TraesCS1D01G332900 chr7D 508340481 508341198 717 False 558.000000 558 80.775000 8666 9385 1 chr7D.!!$F1 719
11 TraesCS1D01G332900 chr6A 546036853 546037569 716 False 507.000000 507 79.558000 8666 9385 1 chr6A.!!$F2 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 291 0.261696 GCCTCCCCTCTCTCTCTCTT 59.738 60.000 0.00 0.00 0.00 2.85 F
516 695 0.594028 TCGAATTCCGCGAATCTCCG 60.594 55.000 8.23 10.16 38.37 4.63 F
539 718 0.737367 CGGAATGCTGCTGTTCGAGA 60.737 55.000 0.00 0.00 0.00 4.04 F
1451 1640 0.823460 CTTGGGCCACACAAGTTGTT 59.177 50.000 5.23 0.00 40.24 2.83 F
2877 3121 0.807496 GCAGATTGACTGGCTGGTTC 59.193 55.000 0.00 0.00 45.82 3.62 F
3063 3307 0.908180 AACGGAAGGGGTCTAGTGGG 60.908 60.000 0.00 0.00 0.00 4.61 F
3652 4257 1.736126 GCTTAGTTTACAAGACGGCCC 59.264 52.381 0.00 0.00 0.00 5.80 F
4990 5603 0.958091 TCAACTTGGGGCATCAAACG 59.042 50.000 0.00 0.00 0.00 3.60 F
5057 5670 4.860802 TCCTAGGCATCCATTTTCTTGA 57.139 40.909 2.96 0.00 0.00 3.02 F
5880 6493 1.069204 TGTCTCTCACACAGGCTTCAC 59.931 52.381 0.00 0.00 0.00 3.18 F
7335 9361 0.035317 TCAGCTTCATGTCGGCACTT 59.965 50.000 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1291 1478 0.679505 TCCGCAGCATGGTAGGATAC 59.320 55.000 14.90 0.0 42.04 2.24 R
2406 2643 1.098050 CCTAGCAGCGCCTTTCAATT 58.902 50.000 2.29 0.0 0.00 2.32 R
2411 2648 2.045926 CACCCTAGCAGCGCCTTT 60.046 61.111 2.29 0.0 0.00 3.11 R
3060 3304 1.424302 CCCTCGTCTATCTAGGACCCA 59.576 57.143 0.00 0.0 31.48 4.51 R
4706 5317 0.676782 ACCAAGCATGCCCGTAGAAC 60.677 55.000 15.66 0.0 0.00 3.01 R
4719 5330 2.531522 AACAAGGCATGAAACCAAGC 57.468 45.000 0.00 0.0 0.00 4.01 R
5309 5922 1.986882 AACTGGGTTTCTTGAGCTGG 58.013 50.000 0.00 0.0 0.00 4.85 R
5880 6493 4.952262 AACATCCACAGTGATTGATTCG 57.048 40.909 0.62 0.0 0.00 3.34 R
7037 7853 5.034200 AGTAGTGGGTACATGGGAAACATA 58.966 41.667 0.00 0.0 37.84 2.29 R
7856 9887 3.369366 CCAAGACCAAAAGGCAACAGTTT 60.369 43.478 0.00 0.0 41.41 2.66 R
8996 11038 0.176680 GAAGCGAGGAAGCAGATGGA 59.823 55.000 0.00 0.0 40.15 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 4.340617 GGTGAAGAGAAGAGAAGAGAGGA 58.659 47.826 0.00 0.00 0.00 3.71
86 87 4.399303 GGTGAAGAGAAGAGAAGAGAGGAG 59.601 50.000 0.00 0.00 0.00 3.69
87 88 5.253330 GTGAAGAGAAGAGAAGAGAGGAGA 58.747 45.833 0.00 0.00 0.00 3.71
88 89 5.710099 GTGAAGAGAAGAGAAGAGAGGAGAA 59.290 44.000 0.00 0.00 0.00 2.87
89 90 5.945784 TGAAGAGAAGAGAAGAGAGGAGAAG 59.054 44.000 0.00 0.00 0.00 2.85
90 91 4.860022 AGAGAAGAGAAGAGAGGAGAAGG 58.140 47.826 0.00 0.00 0.00 3.46
91 92 4.540099 AGAGAAGAGAAGAGAGGAGAAGGA 59.460 45.833 0.00 0.00 0.00 3.36
92 93 4.860022 AGAAGAGAAGAGAGGAGAAGGAG 58.140 47.826 0.00 0.00 0.00 3.69
93 94 4.540099 AGAAGAGAAGAGAGGAGAAGGAGA 59.460 45.833 0.00 0.00 0.00 3.71
277 291 0.261696 GCCTCCCCTCTCTCTCTCTT 59.738 60.000 0.00 0.00 0.00 2.85
280 294 2.024464 CCTCCCCTCTCTCTCTCTTTCA 60.024 54.545 0.00 0.00 0.00 2.69
282 296 2.107366 CCCCTCTCTCTCTCTTTCACC 58.893 57.143 0.00 0.00 0.00 4.02
291 305 2.573462 TCTCTCTTTCACCCTGGATTGG 59.427 50.000 0.00 0.00 0.00 3.16
453 629 2.315386 GCTCCTCGTCCGCGTTTTT 61.315 57.895 4.92 0.00 39.49 1.94
455 631 1.623973 CTCCTCGTCCGCGTTTTTCC 61.624 60.000 4.92 0.00 39.49 3.13
516 695 0.594028 TCGAATTCCGCGAATCTCCG 60.594 55.000 8.23 10.16 38.37 4.63
539 718 0.737367 CGGAATGCTGCTGTTCGAGA 60.737 55.000 0.00 0.00 0.00 4.04
596 781 2.870411 GGAATTGGGATCTTACGTTCCG 59.130 50.000 0.00 0.00 32.48 4.30
657 843 1.105759 GGAGGATTCATGCCCAGTGC 61.106 60.000 0.00 0.00 41.77 4.40
703 889 1.269726 GGTTTAGGTGTCGTGTCCGAA 60.270 52.381 0.00 0.00 46.26 4.30
709 895 1.392510 GGTGTCGTGTCCGAAAATAGC 59.607 52.381 0.00 0.00 46.26 2.97
815 1001 8.737168 TTCTGACTGATGGTAATTTTCTATGG 57.263 34.615 0.00 0.00 0.00 2.74
912 1099 1.291132 GTATTGACCGCTTCAGAGCC 58.709 55.000 0.00 0.00 46.42 4.70
1089 1276 1.358830 CCAGCCATGGGAAGGATCCT 61.359 60.000 15.13 9.02 45.77 3.24
1291 1478 3.692257 ACTTGACTCCATCTGGTTCAG 57.308 47.619 0.00 0.00 36.34 3.02
1305 1494 3.384168 TGGTTCAGTATCCTACCATGCT 58.616 45.455 0.00 0.00 35.82 3.79
1319 1508 1.293924 CATGCTGCGGAGTAGGAAAG 58.706 55.000 5.62 0.00 46.19 2.62
1349 1538 2.916934 ACCCTCCTTGTTGCTATTACCA 59.083 45.455 0.00 0.00 0.00 3.25
1451 1640 0.823460 CTTGGGCCACACAAGTTGTT 59.177 50.000 5.23 0.00 40.24 2.83
1452 1641 1.206849 CTTGGGCCACACAAGTTGTTT 59.793 47.619 5.23 0.00 40.24 2.83
1475 1674 5.989477 TGTCACCATAAATAGGAGTTCCAG 58.011 41.667 0.28 0.00 38.89 3.86
1636 1864 3.866883 ATACCCATTTTGAAAGCCGTG 57.133 42.857 0.00 0.00 0.00 4.94
1640 1868 2.556622 CCCATTTTGAAAGCCGTGTAGT 59.443 45.455 0.00 0.00 0.00 2.73
1652 1883 1.337821 CGTGTAGTCCGTTTCAGAGC 58.662 55.000 0.00 0.00 0.00 4.09
1683 1914 5.380900 TGACACCATCACTGTTAATTTCCA 58.619 37.500 0.00 0.00 29.99 3.53
1697 1934 7.859598 TGTTAATTTCCACATTGCACAATTTC 58.140 30.769 0.00 0.00 0.00 2.17
1878 2115 6.453926 AGTCATCATCCTGATCTGATATCG 57.546 41.667 0.38 0.00 34.28 2.92
2129 2366 2.717639 AACCTCCTATGTGGCATGAC 57.282 50.000 0.00 0.00 35.26 3.06
2346 2583 1.463056 TGCGTCATTGTTCTTTAGGCG 59.537 47.619 0.00 0.00 0.00 5.52
2406 2643 2.561478 AAGCGACTAAGGCAGGAAAA 57.439 45.000 0.00 0.00 0.00 2.29
2411 2648 3.190535 GCGACTAAGGCAGGAAAAATTGA 59.809 43.478 0.00 0.00 0.00 2.57
2770 3008 3.955551 GGGACTAAAGGGTTTGTTGTTGA 59.044 43.478 0.00 0.00 0.00 3.18
2835 3079 0.846015 CATGGATTGGGGAGTAGCCA 59.154 55.000 0.00 0.00 38.95 4.75
2877 3121 0.807496 GCAGATTGACTGGCTGGTTC 59.193 55.000 0.00 0.00 45.82 3.62
2884 3128 2.125912 CTGGCTGGTTCGTCTCGG 60.126 66.667 0.00 0.00 0.00 4.63
3033 3277 4.080807 TCCCCGACTGCATTATTTCTGTTA 60.081 41.667 0.00 0.00 0.00 2.41
3059 3303 6.638096 TTTTTAAAAACGGAAGGGGTCTAG 57.362 37.500 9.31 0.00 0.00 2.43
3060 3304 4.980339 TTAAAAACGGAAGGGGTCTAGT 57.020 40.909 0.00 0.00 0.00 2.57
3061 3305 2.853235 AAAACGGAAGGGGTCTAGTG 57.147 50.000 0.00 0.00 0.00 2.74
3062 3306 0.981943 AAACGGAAGGGGTCTAGTGG 59.018 55.000 0.00 0.00 0.00 4.00
3063 3307 0.908180 AACGGAAGGGGTCTAGTGGG 60.908 60.000 0.00 0.00 0.00 4.61
3305 3909 1.743958 GAGACTCTACCACTGCGCTAA 59.256 52.381 9.73 0.00 0.00 3.09
3407 4012 8.579006 AGAGAACATGAGAATAATGTTTTTGCA 58.421 29.630 0.00 0.00 38.48 4.08
3448 4053 9.825391 CGTATACTTATAAAGCAACGTTTACAG 57.175 33.333 0.00 0.00 0.00 2.74
3518 4123 5.048846 TCAGTTATTTCCTATGCCTTCCC 57.951 43.478 0.00 0.00 0.00 3.97
3642 4247 2.704596 CCCCCTCCCTAGCTTAGTTTAC 59.295 54.545 0.00 0.00 0.00 2.01
3646 4251 4.715297 CCCTCCCTAGCTTAGTTTACAAGA 59.285 45.833 0.00 0.00 0.00 3.02
3648 4253 5.320549 TCCCTAGCTTAGTTTACAAGACG 57.679 43.478 0.00 0.00 0.00 4.18
3649 4254 4.159135 TCCCTAGCTTAGTTTACAAGACGG 59.841 45.833 0.00 0.00 0.00 4.79
3652 4257 1.736126 GCTTAGTTTACAAGACGGCCC 59.264 52.381 0.00 0.00 0.00 5.80
3766 4374 2.501316 GCCAAAAGAACTGGGCCATATT 59.499 45.455 6.72 4.46 40.55 1.28
3783 4391 9.309224 GGGCCATATTTAATAAAGTAACCATCT 57.691 33.333 4.39 0.00 0.00 2.90
4224 4835 4.782019 TGAAGCCAAATTTTACATCGCT 57.218 36.364 0.00 0.00 0.00 4.93
4318 4929 6.179756 TCTTGCTCTGTTAATAATTCTGCCA 58.820 36.000 0.00 0.00 0.00 4.92
4320 4931 4.332543 TGCTCTGTTAATAATTCTGCCACG 59.667 41.667 0.00 0.00 0.00 4.94
4474 5085 2.291190 TCCAAATTTGAACGAACCGGAC 59.709 45.455 19.86 0.00 0.00 4.79
4719 5330 2.961526 AGTACAGTTCTACGGGCATG 57.038 50.000 0.00 0.00 0.00 4.06
4868 5481 7.854534 TGTTGATAGCAAATCAATCACTATCG 58.145 34.615 15.11 0.00 41.26 2.92
4869 5482 7.495606 TGTTGATAGCAAATCAATCACTATCGT 59.504 33.333 15.11 0.00 41.26 3.73
4870 5483 7.643528 TGATAGCAAATCAATCACTATCGTC 57.356 36.000 0.00 0.00 41.26 4.20
4871 5484 7.436933 TGATAGCAAATCAATCACTATCGTCT 58.563 34.615 0.00 0.00 41.26 4.18
4872 5485 8.576442 TGATAGCAAATCAATCACTATCGTCTA 58.424 33.333 0.00 0.00 41.26 2.59
4873 5486 9.579768 GATAGCAAATCAATCACTATCGTCTAT 57.420 33.333 0.00 0.00 32.44 1.98
4990 5603 0.958091 TCAACTTGGGGCATCAAACG 59.042 50.000 0.00 0.00 0.00 3.60
5057 5670 4.860802 TCCTAGGCATCCATTTTCTTGA 57.139 40.909 2.96 0.00 0.00 3.02
5136 5749 6.073440 GCTGAAAATGTGTCGGAGTTACTTTA 60.073 38.462 0.00 0.00 0.00 1.85
5279 5892 5.278315 GGTGTTGAACCTAGTCAAATCCAAC 60.278 44.000 0.00 0.00 46.55 3.77
5309 5922 9.051679 AGGATGTTTTTAAATAAAGTGTTTGCC 57.948 29.630 0.00 0.00 0.00 4.52
5358 5971 5.280011 CCTTCAGTGGGGCGATATACTATTT 60.280 44.000 0.00 0.00 0.00 1.40
5496 6109 7.888021 TCTTGACTTGGCTTTTCCTTTCATATA 59.112 33.333 0.00 0.00 35.26 0.86
5527 6140 8.616076 GTCTATGATTTGCTATGTTAACAAGCT 58.384 33.333 27.56 16.73 37.16 3.74
5880 6493 1.069204 TGTCTCTCACACAGGCTTCAC 59.931 52.381 0.00 0.00 0.00 3.18
5894 6507 2.744202 GGCTTCACGAATCAATCACTGT 59.256 45.455 0.00 0.00 0.00 3.55
6027 6737 3.627577 CACCATAGTAGTGTGAATTGCCC 59.372 47.826 0.00 0.00 31.66 5.36
6325 7137 5.694995 AGTCACCTGAAATTTCCTGAAGAA 58.305 37.500 15.48 0.00 0.00 2.52
7024 7840 2.872858 GACACAGGGAAGACACAACTTC 59.127 50.000 0.00 0.00 43.60 3.01
7037 7853 4.648651 ACACAACTTCTAAAATACGGGCT 58.351 39.130 0.00 0.00 0.00 5.19
7054 9080 2.583143 GGCTATGTTTCCCATGTACCC 58.417 52.381 0.00 0.00 34.86 3.69
7230 9256 4.578105 GGAGAAAGGTATGCCTGAATTCAG 59.422 45.833 25.75 25.75 46.33 3.02
7335 9361 0.035317 TCAGCTTCATGTCGGCACTT 59.965 50.000 0.00 0.00 0.00 3.16
7448 9475 0.988832 TGCCGGGATTGGTTAGTCTT 59.011 50.000 2.18 0.00 0.00 3.01
7934 9965 7.084486 ACCGATGCTTTCTTTTTAGTGAATTC 58.916 34.615 0.00 0.00 0.00 2.17
7951 9982 8.347729 AGTGAATTCGTTAAAACAAAATCCAC 57.652 30.769 0.04 0.00 0.00 4.02
8113 10144 6.593770 TCTGACGAGCATGTGTATTACAATTT 59.406 34.615 0.00 0.00 43.77 1.82
8192 10223 9.739276 AAAACTGACTGATATGGTTATCAAGAA 57.261 29.630 0.00 0.00 42.76 2.52
8226 10257 5.560966 ATGATGATTTGTGGGTTACGTTC 57.439 39.130 0.00 0.00 0.00 3.95
8264 10296 2.951642 ACCGAACCCTATTGCAATCATG 59.048 45.455 16.86 7.78 0.00 3.07
8266 10298 3.381272 CCGAACCCTATTGCAATCATGTT 59.619 43.478 16.86 16.28 0.00 2.71
8267 10299 4.353737 CGAACCCTATTGCAATCATGTTG 58.646 43.478 16.86 8.47 0.00 3.33
8268 10301 3.806625 ACCCTATTGCAATCATGTTGC 57.193 42.857 16.86 19.66 45.11 4.17
8269 10302 3.368248 ACCCTATTGCAATCATGTTGCT 58.632 40.909 16.86 13.43 45.13 3.91
8283 10316 1.202245 TGTTGCTCGGTTTGCTTTGAC 60.202 47.619 0.00 0.00 0.00 3.18
8341 10376 1.449726 CTTGCACTGGCTCAGTTGCA 61.450 55.000 18.67 18.67 42.59 4.08
8385 10420 3.747854 TCATGCAAATGCTTGGAACAA 57.252 38.095 17.83 0.00 43.72 2.83
8398 10433 2.875296 TGGAACAAGTGAGGGGATTTG 58.125 47.619 0.00 0.00 31.92 2.32
8432 10467 5.169295 GTGGAGAGTAACATGTTGAGTACC 58.831 45.833 21.42 17.21 0.00 3.34
8467 10502 4.143742 GCATTTCTTCGTCAAAAGCGAAAG 60.144 41.667 0.00 0.00 45.78 2.62
8537 10575 0.430858 GCATTTGCGCGTCAAAAGAC 59.569 50.000 24.77 16.26 46.60 3.01
8554 10592 6.919662 TCAAAAGACAACAATGAGCAATCTTC 59.080 34.615 0.00 0.00 0.00 2.87
8580 10618 3.369892 GCTAACCAGAGCTGAAGATGGAA 60.370 47.826 0.00 0.00 39.50 3.53
8612 10650 1.001487 CACATCGTTTTGCCAGCTTCA 60.001 47.619 0.00 0.00 0.00 3.02
8615 10653 0.662619 TCGTTTTGCCAGCTTCAGTG 59.337 50.000 0.00 0.00 0.00 3.66
8619 10657 0.740149 TTTGCCAGCTTCAGTGTGTG 59.260 50.000 0.00 0.00 0.00 3.82
8620 10658 0.107263 TTGCCAGCTTCAGTGTGTGA 60.107 50.000 0.00 0.00 0.00 3.58
8622 10660 1.347378 TGCCAGCTTCAGTGTGTGATA 59.653 47.619 0.00 0.00 34.17 2.15
8623 10661 1.734465 GCCAGCTTCAGTGTGTGATAC 59.266 52.381 0.00 0.00 34.17 2.24
8625 10663 3.402110 CCAGCTTCAGTGTGTGATACAA 58.598 45.455 0.00 0.00 41.89 2.41
8626 10664 3.434641 CCAGCTTCAGTGTGTGATACAAG 59.565 47.826 0.00 0.00 41.89 3.16
8627 10665 4.060900 CAGCTTCAGTGTGTGATACAAGT 58.939 43.478 0.00 0.00 41.89 3.16
8628 10666 4.151335 CAGCTTCAGTGTGTGATACAAGTC 59.849 45.833 0.00 0.00 41.89 3.01
8629 10667 4.058124 GCTTCAGTGTGTGATACAAGTCA 58.942 43.478 0.00 0.00 41.89 3.41
8630 10668 4.084328 GCTTCAGTGTGTGATACAAGTCAC 60.084 45.833 0.30 0.30 46.75 3.67
8636 10674 1.790755 GTGATACAAGTCACACGGCA 58.209 50.000 2.40 0.00 46.04 5.69
8637 10675 2.139917 GTGATACAAGTCACACGGCAA 58.860 47.619 2.40 0.00 46.04 4.52
8638 10676 2.742053 GTGATACAAGTCACACGGCAAT 59.258 45.455 2.40 0.00 46.04 3.56
8639 10677 3.930229 GTGATACAAGTCACACGGCAATA 59.070 43.478 2.40 0.00 46.04 1.90
8640 10678 4.390603 GTGATACAAGTCACACGGCAATAA 59.609 41.667 2.40 0.00 46.04 1.40
8641 10679 5.064707 GTGATACAAGTCACACGGCAATAAT 59.935 40.000 2.40 0.00 46.04 1.28
8642 10680 6.256975 GTGATACAAGTCACACGGCAATAATA 59.743 38.462 2.40 0.00 46.04 0.98
8643 10681 4.939509 ACAAGTCACACGGCAATAATAC 57.060 40.909 0.00 0.00 0.00 1.89
8644 10682 4.320023 ACAAGTCACACGGCAATAATACA 58.680 39.130 0.00 0.00 0.00 2.29
8645 10683 4.391830 ACAAGTCACACGGCAATAATACAG 59.608 41.667 0.00 0.00 0.00 2.74
8646 10684 4.202245 AGTCACACGGCAATAATACAGT 57.798 40.909 0.00 0.00 0.00 3.55
8647 10685 3.932710 AGTCACACGGCAATAATACAGTG 59.067 43.478 0.00 0.00 35.89 3.66
8660 10698 8.761575 CAATAATACAGTGCAAGGAATGTTTT 57.238 30.769 0.00 1.94 0.00 2.43
8713 10753 7.523380 GCGTACCATAGCTTTATAGAAGAGGAA 60.523 40.741 0.00 0.00 0.00 3.36
8762 10803 2.802816 GCTAGTCACAAGGTCACAAGTG 59.197 50.000 0.00 0.00 0.00 3.16
8772 10814 1.066752 TCACAAGTGGACCGTGACG 59.933 57.895 0.00 0.00 34.83 4.35
8774 10816 2.279851 CAAGTGGACCGTGACGCA 60.280 61.111 0.00 0.00 0.00 5.24
8785 10827 2.601666 TGACGCAGCCTCCACTCT 60.602 61.111 0.00 0.00 0.00 3.24
8831 10873 2.167398 AACTACGTGCGCCACTCCAT 62.167 55.000 4.18 0.00 31.34 3.41
8843 10885 2.203126 CTCCATTCGCTCCAGCCC 60.203 66.667 0.00 0.00 37.91 5.19
8854 10896 0.695347 CTCCAGCCCTCTTCCAGTTT 59.305 55.000 0.00 0.00 0.00 2.66
8930 10972 0.683412 ACCGAAGACCCTAGCGTTTT 59.317 50.000 0.00 0.00 0.00 2.43
8996 11038 0.037447 GCCTTTCCTGCTCCTCTTGT 59.963 55.000 0.00 0.00 0.00 3.16
9002 11044 1.202330 CCTGCTCCTCTTGTCCATCT 58.798 55.000 0.00 0.00 0.00 2.90
9013 11055 1.260538 TGTCCATCTGCTTCCTCGCT 61.261 55.000 0.00 0.00 0.00 4.93
9018 11060 1.954362 ATCTGCTTCCTCGCTTCGCT 61.954 55.000 0.00 0.00 0.00 4.93
9026 11068 2.048222 TCGCTTCGCTCCACCAAG 60.048 61.111 0.00 0.00 0.00 3.61
9045 11087 2.645192 TTGCGATCTGGGACTGCGA 61.645 57.895 0.00 0.00 0.00 5.10
9079 11122 2.766263 AGTTTGATCCACGCTGATCCTA 59.234 45.455 11.09 0.00 40.37 2.94
9160 11203 0.757561 TGTCCTCGTCCTGGTCACAA 60.758 55.000 0.00 0.00 0.00 3.33
9172 11215 1.423541 TGGTCACAAAGGTAGCATGGT 59.576 47.619 1.62 1.62 0.00 3.55
9175 11220 2.744202 GTCACAAAGGTAGCATGGTGAG 59.256 50.000 7.59 0.00 36.10 3.51
9178 11224 2.108250 ACAAAGGTAGCATGGTGAGGTT 59.892 45.455 7.89 0.00 0.00 3.50
9210 11256 0.034896 CCGTGCCTAGTTCACCTGTT 59.965 55.000 6.75 0.00 0.00 3.16
9292 11338 0.611618 AACATTTCCAGATGGCCGCA 60.612 50.000 0.00 0.00 34.44 5.69
9343 11389 0.109226 GCATCCTATACGCCGAGGAC 60.109 60.000 2.14 0.00 44.64 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 235 2.892425 GAGCCATCTGGAACCGCG 60.892 66.667 0.00 0.00 37.39 6.46
239 244 1.463018 GGGGATGGGAGAGCCATCT 60.463 63.158 2.25 0.00 42.41 2.90
282 296 1.227383 GGCCACTACCCAATCCAGG 59.773 63.158 0.00 0.00 0.00 4.45
657 843 3.189702 TCAAAAATCCCGAAACTAAGCCG 59.810 43.478 0.00 0.00 0.00 5.52
703 889 6.950619 AGAATCCTTCCAAGTTTCTGCTATTT 59.049 34.615 2.53 0.00 30.24 1.40
709 895 7.148171 GGTCAATAGAATCCTTCCAAGTTTCTG 60.148 40.741 10.09 0.00 32.36 3.02
815 1001 5.360714 TGGAATGATGCCTATCTGGAAAAAC 59.639 40.000 0.00 0.00 38.35 2.43
1291 1478 0.679505 TCCGCAGCATGGTAGGATAC 59.320 55.000 14.90 0.00 42.04 2.24
1305 1494 1.214589 GTCGCTTTCCTACTCCGCA 59.785 57.895 0.00 0.00 0.00 5.69
1319 1508 2.032681 AAGGAGGGTGCTTGTCGC 59.967 61.111 0.00 0.00 39.77 5.19
1451 1640 6.012858 ACTGGAACTCCTATTTATGGTGACAA 60.013 38.462 0.00 0.00 39.86 3.18
1452 1641 5.487488 ACTGGAACTCCTATTTATGGTGACA 59.513 40.000 0.00 0.00 40.49 3.58
1454 1643 5.104527 CCACTGGAACTCCTATTTATGGTGA 60.105 44.000 0.00 0.00 36.82 4.02
1455 1644 5.104527 TCCACTGGAACTCCTATTTATGGTG 60.105 44.000 0.00 0.00 36.82 4.17
1456 1645 5.036916 TCCACTGGAACTCCTATTTATGGT 58.963 41.667 0.00 0.00 36.82 3.55
1594 1822 8.086522 GGTATATTAATCACCTTGAGCGAAGTA 58.913 37.037 10.55 0.00 0.00 2.24
1636 1864 3.186613 CCAAAAGCTCTGAAACGGACTAC 59.813 47.826 0.00 0.00 0.00 2.73
1640 1868 2.341846 ACCAAAAGCTCTGAAACGGA 57.658 45.000 0.00 0.00 0.00 4.69
1683 1914 5.401550 CAGGTTATCGAAATTGTGCAATGT 58.598 37.500 0.00 0.00 0.00 2.71
1697 1934 2.540515 ACAATCAGACGCAGGTTATCG 58.459 47.619 0.00 0.00 0.00 2.92
1878 2115 2.415512 CCAGCGCCTAAAAGTAGACAAC 59.584 50.000 2.29 0.00 0.00 3.32
2109 2346 3.384168 AGTCATGCCACATAGGAGGTTA 58.616 45.455 0.00 0.00 41.22 2.85
2110 2347 2.200081 AGTCATGCCACATAGGAGGTT 58.800 47.619 0.00 0.00 41.22 3.50
2129 2366 6.712547 ACAACCAGAATTAGAAGACCAAGAAG 59.287 38.462 0.00 0.00 0.00 2.85
2346 2583 1.136500 CTCGCCTTAGGTCACCTTACC 59.864 57.143 0.00 0.00 40.06 2.85
2406 2643 1.098050 CCTAGCAGCGCCTTTCAATT 58.902 50.000 2.29 0.00 0.00 2.32
2411 2648 2.045926 CACCCTAGCAGCGCCTTT 60.046 61.111 2.29 0.00 0.00 3.11
2770 3008 6.434340 CCAACCTCAATCATCATCATCATCAT 59.566 38.462 0.00 0.00 0.00 2.45
2835 3079 2.397597 ACCAATTGTTTTCCCTGCTGT 58.602 42.857 4.43 0.00 0.00 4.40
2896 3140 6.614694 AAGTATATACATGGCAATACGGGA 57.385 37.500 15.18 0.00 31.54 5.14
3056 3300 4.563993 CCTCGTCTATCTAGGACCCACTAG 60.564 54.167 0.00 0.00 41.41 2.57
3057 3301 3.327172 CCTCGTCTATCTAGGACCCACTA 59.673 52.174 0.00 0.00 31.48 2.74
3058 3302 2.106857 CCTCGTCTATCTAGGACCCACT 59.893 54.545 0.00 0.00 31.48 4.00
3059 3303 2.506444 CCTCGTCTATCTAGGACCCAC 58.494 57.143 0.00 0.00 31.48 4.61
3060 3304 1.424302 CCCTCGTCTATCTAGGACCCA 59.576 57.143 0.00 0.00 31.48 4.51
3061 3305 1.704070 TCCCTCGTCTATCTAGGACCC 59.296 57.143 0.00 0.00 31.48 4.46
3062 3306 3.505480 TTCCCTCGTCTATCTAGGACC 57.495 52.381 0.00 0.00 31.48 4.46
3063 3307 5.535406 TCAATTTCCCTCGTCTATCTAGGAC 59.465 44.000 0.00 0.00 31.48 3.85
3173 3764 2.032071 GGCACTGGGTACACGCTT 59.968 61.111 0.00 0.00 0.00 4.68
3305 3909 2.899900 TGTGATATATGAAGAGCGGGCT 59.100 45.455 0.00 0.00 0.00 5.19
3407 4012 3.958798 AGTATACGGGTCAACTGCACTAT 59.041 43.478 0.00 0.00 0.00 2.12
3448 4053 1.678970 CCACTAAACCAGGCCAGCC 60.679 63.158 5.01 0.00 0.00 4.85
3518 4123 4.573900 ACAACACAGCTGGAGAAGAATAG 58.426 43.478 19.93 0.00 0.00 1.73
3656 4261 0.180406 AAAGAAGCGCCCACGGATAT 59.820 50.000 2.29 0.00 40.57 1.63
3657 4262 0.825410 TAAAGAAGCGCCCACGGATA 59.175 50.000 2.29 0.00 40.57 2.59
3658 4263 0.462047 CTAAAGAAGCGCCCACGGAT 60.462 55.000 2.29 0.00 40.57 4.18
3659 4264 1.079405 CTAAAGAAGCGCCCACGGA 60.079 57.895 2.29 0.00 40.57 4.69
4224 4835 6.436218 TGGACTCTATTGCTAGTACAGTTTCA 59.564 38.462 0.00 0.00 31.50 2.69
4465 5076 1.066605 CCAGGTGTATAGTCCGGTTCG 59.933 57.143 0.00 0.00 0.00 3.95
4706 5317 0.676782 ACCAAGCATGCCCGTAGAAC 60.677 55.000 15.66 0.00 0.00 3.01
4719 5330 2.531522 AACAAGGCATGAAACCAAGC 57.468 45.000 0.00 0.00 0.00 4.01
4867 5480 2.802816 GCAAGGTGCATTAGGATAGACG 59.197 50.000 0.00 0.00 44.26 4.18
5136 5749 8.355913 GTTCTTCCTTGAGAAAGATTCATGTTT 58.644 33.333 0.00 0.00 37.40 2.83
5279 5892 8.816640 ACACTTTATTTAAAAACATCCTGCAG 57.183 30.769 6.78 6.78 0.00 4.41
5309 5922 1.986882 AACTGGGTTTCTTGAGCTGG 58.013 50.000 0.00 0.00 0.00 4.85
5358 5971 8.537728 AATATGAGGTATTTGATTTCCTTGCA 57.462 30.769 0.00 0.00 28.44 4.08
5752 6365 8.459635 GGACCACCTAATAAAGAAAGAAATGTC 58.540 37.037 0.00 0.00 0.00 3.06
5880 6493 4.952262 AACATCCACAGTGATTGATTCG 57.048 40.909 0.62 0.00 0.00 3.34
5894 6507 8.429237 AAGATACCAAACCAAATAAACATCCA 57.571 30.769 0.00 0.00 0.00 3.41
6184 6996 8.650143 AACAAGTTAGGTGAATTGTTGGATAT 57.350 30.769 3.11 0.00 42.56 1.63
6325 7137 6.238869 CCTTAGTTTCAGAAGAAAGCTTTGCT 60.239 38.462 18.30 10.63 43.95 3.91
7024 7840 5.684550 GGGAAACATAGCCCGTATTTTAG 57.315 43.478 0.00 0.00 34.00 1.85
7037 7853 5.034200 AGTAGTGGGTACATGGGAAACATA 58.966 41.667 0.00 0.00 37.84 2.29
7393 9420 9.734620 TCATTCACAATTTCAAAGTTCTTGTAG 57.265 29.630 0.00 0.00 0.00 2.74
7856 9887 3.369366 CCAAGACCAAAAGGCAACAGTTT 60.369 43.478 0.00 0.00 41.41 2.66
7934 9965 3.322541 AGGGGGTGGATTTTGTTTTAACG 59.677 43.478 0.00 0.00 0.00 3.18
7951 9982 4.446311 CCATACTATTTTGGAGACAGGGGG 60.446 50.000 0.00 0.00 44.54 5.40
8113 10144 5.473504 GGTTCAGAAAAGCAGAGGTGAATTA 59.526 40.000 0.00 0.00 0.00 1.40
8192 10223 4.525487 ACAAATCATCATTGCCTGTCAAGT 59.475 37.500 0.00 0.00 38.22 3.16
8226 10257 1.069500 CGGTAAGGCAAAACCAGAACG 60.069 52.381 4.20 0.00 43.14 3.95
8264 10296 1.477105 GTCAAAGCAAACCGAGCAAC 58.523 50.000 0.00 0.00 0.00 4.17
8266 10298 1.646540 CGTCAAAGCAAACCGAGCA 59.353 52.632 0.00 0.00 0.00 4.26
8267 10299 1.725973 GCGTCAAAGCAAACCGAGC 60.726 57.895 0.00 0.00 37.05 5.03
8268 10301 0.307760 AAGCGTCAAAGCAAACCGAG 59.692 50.000 0.00 0.00 40.15 4.63
8269 10302 0.306533 GAAGCGTCAAAGCAAACCGA 59.693 50.000 0.00 0.00 40.15 4.69
8300 10335 8.131731 GCAAGAAATTACAAGTTTCAGAACTCT 58.868 33.333 0.00 0.00 45.18 3.24
8324 10359 1.895231 CTGCAACTGAGCCAGTGCA 60.895 57.895 20.03 20.03 44.62 4.57
8341 10376 6.966534 ACTTCACCACTTTCAAATGATTCT 57.033 33.333 0.00 0.00 0.00 2.40
8385 10420 0.251787 GGGCAACAAATCCCCTCACT 60.252 55.000 0.00 0.00 36.50 3.41
8398 10433 1.961277 CTCTCCACACACGGGCAAC 60.961 63.158 0.00 0.00 0.00 4.17
8432 10467 0.877071 AGAAATGCAAGTGGTGAGCG 59.123 50.000 0.00 0.00 0.00 5.03
8467 10502 2.158608 CCCCCTGATGTACCATTTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
8537 10575 3.730061 GCTCGGAAGATTGCTCATTGTTG 60.730 47.826 0.00 0.00 40.84 3.33
8580 10618 1.909700 ACGATGTGAAAACCCATGCT 58.090 45.000 0.00 0.00 0.00 3.79
8619 10657 5.734855 ATTATTGCCGTGTGACTTGTATC 57.265 39.130 0.00 0.00 0.00 2.24
8620 10658 6.110033 TGTATTATTGCCGTGTGACTTGTAT 58.890 36.000 0.00 0.00 0.00 2.29
8622 10660 4.320023 TGTATTATTGCCGTGTGACTTGT 58.680 39.130 0.00 0.00 0.00 3.16
8623 10661 4.391830 ACTGTATTATTGCCGTGTGACTTG 59.608 41.667 0.00 0.00 0.00 3.16
8625 10663 3.932710 CACTGTATTATTGCCGTGTGACT 59.067 43.478 0.00 0.00 0.00 3.41
8626 10664 3.485216 GCACTGTATTATTGCCGTGTGAC 60.485 47.826 0.00 0.00 0.00 3.67
8627 10665 2.675844 GCACTGTATTATTGCCGTGTGA 59.324 45.455 0.00 0.00 0.00 3.58
8628 10666 2.418280 TGCACTGTATTATTGCCGTGTG 59.582 45.455 0.00 0.00 34.32 3.82
8629 10667 2.705730 TGCACTGTATTATTGCCGTGT 58.294 42.857 0.00 0.00 34.32 4.49
8630 10668 3.487376 CCTTGCACTGTATTATTGCCGTG 60.487 47.826 0.00 0.00 34.32 4.94
8631 10669 2.682856 CCTTGCACTGTATTATTGCCGT 59.317 45.455 0.00 0.00 34.32 5.68
8632 10670 2.942376 TCCTTGCACTGTATTATTGCCG 59.058 45.455 0.00 0.00 34.32 5.69
8633 10671 4.981806 TTCCTTGCACTGTATTATTGCC 57.018 40.909 0.00 0.00 34.32 4.52
8634 10672 5.894807 ACATTCCTTGCACTGTATTATTGC 58.105 37.500 0.00 0.00 35.67 3.56
8635 10673 8.761575 AAAACATTCCTTGCACTGTATTATTG 57.238 30.769 0.00 0.00 0.00 1.90
8725 10766 7.948357 TGTGACTAGCAACTAAACTTCTCTTA 58.052 34.615 0.00 0.00 0.00 2.10
8772 10814 1.681486 GGGAGTAGAGTGGAGGCTGC 61.681 65.000 0.00 0.00 0.00 5.25
8774 10816 0.639392 ATGGGAGTAGAGTGGAGGCT 59.361 55.000 0.00 0.00 0.00 4.58
8785 10827 8.195165 AGTAGTACGTAGTGTATATGGGAGTA 57.805 38.462 13.27 0.00 45.73 2.59
8831 10873 2.660064 GGAAGAGGGCTGGAGCGAA 61.660 63.158 0.00 0.00 43.26 4.70
8843 10885 3.439476 CAGGATCTGCAAAACTGGAAGAG 59.561 47.826 0.00 0.00 37.43 2.85
8854 10896 3.457380 AGGCTATCTTTCAGGATCTGCAA 59.543 43.478 0.00 0.00 31.67 4.08
8907 10949 0.945813 CGCTAGGGTCTTCGGTAGAG 59.054 60.000 0.00 0.00 32.23 2.43
8996 11038 0.176680 GAAGCGAGGAAGCAGATGGA 59.823 55.000 0.00 0.00 40.15 3.41
9013 11055 3.744559 GCAACTTGGTGGAGCGAA 58.255 55.556 0.00 0.00 0.00 4.70
9018 11060 0.321564 CCAGATCGCAACTTGGTGGA 60.322 55.000 0.00 0.00 0.00 4.02
9026 11068 2.456119 CGCAGTCCCAGATCGCAAC 61.456 63.158 0.00 0.00 0.00 4.17
9045 11087 0.398696 TCAAACTATGTGCCCCACGT 59.601 50.000 0.00 0.00 37.14 4.49
9079 11122 1.344763 GTGTGGTACCTCTGCTTCACT 59.655 52.381 14.36 0.00 0.00 3.41
9106 11149 1.741401 GCTCCAGTGCGTGTATGCA 60.741 57.895 0.00 0.00 43.95 3.96
9160 11203 2.555227 CCAAACCTCACCATGCTACCTT 60.555 50.000 0.00 0.00 0.00 3.50
9210 11256 3.737047 GCAATATCGTCTTTGGACCTCGA 60.737 47.826 0.00 0.00 39.15 4.04
9292 11338 3.385115 AGGGATACGATTCCACTCCTTT 58.615 45.455 9.92 0.00 37.53 3.11
9359 11405 0.970937 CTCTGGGCCTGGAACGAGTA 60.971 60.000 10.79 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.