Multiple sequence alignment - TraesCS1D01G332800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G332800 chr1D 100.000 4617 0 0 1 4617 423060681 423056065 0.000000e+00 8527.0
1 TraesCS1D01G332800 chr1B 93.289 3040 138 26 950 3968 572311547 572308553 0.000000e+00 4423.0
2 TraesCS1D01G332800 chr1B 93.254 919 36 12 17 931 603499037 603499933 0.000000e+00 1330.0
3 TraesCS1D01G332800 chr1B 90.625 544 41 8 4078 4616 572308563 572308025 0.000000e+00 713.0
4 TraesCS1D01G332800 chr1A 93.612 2677 97 25 950 3603 518989286 518986661 0.000000e+00 3928.0
5 TraesCS1D01G332800 chr1A 89.773 264 23 4 4355 4616 518985991 518985730 7.400000e-88 335.0
6 TraesCS1D01G332800 chr1A 77.232 224 29 14 4288 4502 59130737 59130527 1.360000e-20 111.0
7 TraesCS1D01G332800 chr3D 91.393 2347 138 25 1585 3907 573119656 573121962 0.000000e+00 3157.0
8 TraesCS1D01G332800 chr3A 92.777 2132 123 17 1587 3695 707124457 707126580 0.000000e+00 3055.0
9 TraesCS1D01G332800 chr3B 91.964 2128 131 19 1592 3696 762307120 762309230 0.000000e+00 2946.0
10 TraesCS1D01G332800 chr3B 95.098 918 35 5 17 929 519787829 519786917 0.000000e+00 1437.0
11 TraesCS1D01G332800 chr3B 92.284 972 25 10 1 929 736470462 736471426 0.000000e+00 1334.0
12 TraesCS1D01G332800 chr3B 91.413 920 45 9 17 932 787002072 787001183 0.000000e+00 1230.0
13 TraesCS1D01G332800 chr3B 92.763 152 10 1 27 177 114599468 114599317 7.780000e-53 219.0
14 TraesCS1D01G332800 chr3B 90.000 170 12 5 13 177 545178571 545178740 1.010000e-51 215.0
15 TraesCS1D01G332800 chr3B 81.034 116 13 7 3967 4080 760381517 760381409 2.960000e-12 84.2
16 TraesCS1D01G332800 chr4D 98.067 931 12 4 1 929 426646836 426647762 0.000000e+00 1615.0
17 TraesCS1D01G332800 chr4D 95.916 906 25 7 40 937 20119319 20120220 0.000000e+00 1458.0
18 TraesCS1D01G332800 chr4D 78.630 365 69 9 4145 4505 111948088 111948447 2.780000e-57 233.0
19 TraesCS1D01G332800 chr4D 93.939 99 6 0 3977 4075 506980331 506980233 2.880000e-32 150.0
20 TraesCS1D01G332800 chr4D 80.870 115 14 7 3968 4080 382741143 382741251 2.960000e-12 84.2
21 TraesCS1D01G332800 chr7A 94.652 935 42 5 1 932 733693475 733692546 0.000000e+00 1443.0
22 TraesCS1D01G332800 chr7A 95.226 817 30 5 118 930 116011586 116010775 0.000000e+00 1284.0
23 TraesCS1D01G332800 chr5D 94.978 896 34 8 40 929 550291481 550290591 0.000000e+00 1395.0
24 TraesCS1D01G332800 chr5D 79.562 274 44 11 4236 4505 56929549 56929284 7.890000e-43 185.0
25 TraesCS1D01G332800 chr2D 93.906 919 23 9 40 929 498822272 498823186 0.000000e+00 1356.0
26 TraesCS1D01G332800 chr2D 81.034 116 13 7 3967 4080 490469565 490469457 2.960000e-12 84.2
27 TraesCS1D01G332800 chr7D 93.742 815 47 3 1717 2528 139369689 139368876 0.000000e+00 1219.0
28 TraesCS1D01G332800 chr7D 91.304 115 10 0 1472 1586 139369858 139369744 1.720000e-34 158.0
29 TraesCS1D01G332800 chr4A 91.065 817 67 4 1717 2528 220627989 220627174 0.000000e+00 1099.0
30 TraesCS1D01G332800 chr6A 91.975 162 12 1 2368 2528 395653971 395654132 4.650000e-55 226.0
31 TraesCS1D01G332800 chr2B 92.763 152 10 1 27 177 252398717 252398566 7.780000e-53 219.0
32 TraesCS1D01G332800 chr2A 90.741 162 14 1 2368 2528 351185396 351185557 1.010000e-51 215.0
33 TraesCS1D01G332800 chr5B 78.755 273 48 10 4236 4505 59908159 59907894 1.710000e-39 174.0
34 TraesCS1D01G332800 chr5B 81.197 117 13 7 3966 4080 662974714 662974605 8.230000e-13 86.1
35 TraesCS1D01G332800 chr5B 81.034 116 13 7 3967 4080 356190809 356190917 2.960000e-12 84.2
36 TraesCS1D01G332800 chr5A 93.578 109 4 3 3969 4075 691709802 691709909 4.780000e-35 159.0
37 TraesCS1D01G332800 chr5A 94.565 92 5 0 3984 4075 703415194 703415103 4.820000e-30 143.0
38 TraesCS1D01G332800 chr5A 84.259 108 15 2 4284 4391 45290623 45290518 2.270000e-18 104.0
39 TraesCS1D01G332800 chr5A 81.034 116 13 7 3967 4080 534122497 534122605 2.960000e-12 84.2
40 TraesCS1D01G332800 chr6D 74.852 338 67 12 4178 4504 309726824 309727154 2.240000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G332800 chr1D 423056065 423060681 4616 True 8527.0 8527 100.0000 1 4617 1 chr1D.!!$R1 4616
1 TraesCS1D01G332800 chr1B 572308025 572311547 3522 True 2568.0 4423 91.9570 950 4616 2 chr1B.!!$R1 3666
2 TraesCS1D01G332800 chr1B 603499037 603499933 896 False 1330.0 1330 93.2540 17 931 1 chr1B.!!$F1 914
3 TraesCS1D01G332800 chr1A 518985730 518989286 3556 True 2131.5 3928 91.6925 950 4616 2 chr1A.!!$R2 3666
4 TraesCS1D01G332800 chr3D 573119656 573121962 2306 False 3157.0 3157 91.3930 1585 3907 1 chr3D.!!$F1 2322
5 TraesCS1D01G332800 chr3A 707124457 707126580 2123 False 3055.0 3055 92.7770 1587 3695 1 chr3A.!!$F1 2108
6 TraesCS1D01G332800 chr3B 762307120 762309230 2110 False 2946.0 2946 91.9640 1592 3696 1 chr3B.!!$F3 2104
7 TraesCS1D01G332800 chr3B 519786917 519787829 912 True 1437.0 1437 95.0980 17 929 1 chr3B.!!$R2 912
8 TraesCS1D01G332800 chr3B 736470462 736471426 964 False 1334.0 1334 92.2840 1 929 1 chr3B.!!$F2 928
9 TraesCS1D01G332800 chr3B 787001183 787002072 889 True 1230.0 1230 91.4130 17 932 1 chr3B.!!$R4 915
10 TraesCS1D01G332800 chr4D 426646836 426647762 926 False 1615.0 1615 98.0670 1 929 1 chr4D.!!$F4 928
11 TraesCS1D01G332800 chr4D 20119319 20120220 901 False 1458.0 1458 95.9160 40 937 1 chr4D.!!$F1 897
12 TraesCS1D01G332800 chr7A 733692546 733693475 929 True 1443.0 1443 94.6520 1 932 1 chr7A.!!$R2 931
13 TraesCS1D01G332800 chr7A 116010775 116011586 811 True 1284.0 1284 95.2260 118 930 1 chr7A.!!$R1 812
14 TraesCS1D01G332800 chr5D 550290591 550291481 890 True 1395.0 1395 94.9780 40 929 1 chr5D.!!$R2 889
15 TraesCS1D01G332800 chr2D 498822272 498823186 914 False 1356.0 1356 93.9060 40 929 1 chr2D.!!$F1 889
16 TraesCS1D01G332800 chr7D 139368876 139369858 982 True 688.5 1219 92.5230 1472 2528 2 chr7D.!!$R1 1056
17 TraesCS1D01G332800 chr4A 220627174 220627989 815 True 1099.0 1099 91.0650 1717 2528 1 chr4A.!!$R1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 377 0.528017 GCAGCCCTTGGTTAAAGCTC 59.472 55.0 0.00 0.0 34.24 4.09 F
1275 1362 0.030908 GATCTCGAGGTAGTTGCCCG 59.969 60.0 13.56 0.0 0.00 6.13 F
2160 2288 0.241749 TCTCGATTGCGTACACCGTT 59.758 50.0 0.00 0.0 39.32 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 2288 0.101579 CATTGATTGCATCAGCCGCA 59.898 50.0 0.00 0.0 40.94 5.69 R
2475 2608 0.747255 CGAGGTACATCCCTGAGGTG 59.253 60.0 1.23 0.0 34.03 4.00 R
4087 4243 0.108186 CACCGATAGCAGGCTTCACA 60.108 55.0 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.271108 TGGAAAGCTACAACCGATGCA 60.271 47.619 0.00 0.00 0.00 3.96
329 377 0.528017 GCAGCCCTTGGTTAAAGCTC 59.472 55.000 0.00 0.00 34.24 4.09
330 378 1.888391 GCAGCCCTTGGTTAAAGCTCT 60.888 52.381 0.00 0.00 34.24 4.09
331 379 2.087646 CAGCCCTTGGTTAAAGCTCTC 58.912 52.381 0.00 0.00 34.24 3.20
843 918 5.178797 CGTTGACTTGGTGAGGATTAGATT 58.821 41.667 0.00 0.00 0.00 2.40
879 954 4.150203 TAAATCGGGCGGCTGCGA 62.150 61.111 13.99 13.04 44.10 5.10
940 1015 7.814264 CAGATTACTGCCCTTTGATTAATCT 57.186 36.000 16.24 0.00 36.95 2.40
941 1016 7.869800 CAGATTACTGCCCTTTGATTAATCTC 58.130 38.462 16.24 1.39 35.20 2.75
942 1017 7.001073 AGATTACTGCCCTTTGATTAATCTCC 58.999 38.462 16.24 0.00 33.10 3.71
943 1018 3.903467 ACTGCCCTTTGATTAATCTCCC 58.097 45.455 16.24 0.83 0.00 4.30
944 1019 3.225940 CTGCCCTTTGATTAATCTCCCC 58.774 50.000 16.24 1.76 0.00 4.81
945 1020 2.584965 TGCCCTTTGATTAATCTCCCCA 59.415 45.455 16.24 4.07 0.00 4.96
946 1021 3.012274 TGCCCTTTGATTAATCTCCCCAA 59.988 43.478 16.24 0.03 0.00 4.12
947 1022 3.384789 GCCCTTTGATTAATCTCCCCAAC 59.615 47.826 16.24 0.00 0.00 3.77
948 1023 4.871822 CCCTTTGATTAATCTCCCCAACT 58.128 43.478 16.24 0.00 0.00 3.16
1092 1169 3.536956 AACGAGACTCCAAACTGAACA 57.463 42.857 0.00 0.00 0.00 3.18
1273 1360 0.389757 GGGATCTCGAGGTAGTTGCC 59.610 60.000 13.56 1.78 0.00 4.52
1274 1361 0.389757 GGATCTCGAGGTAGTTGCCC 59.610 60.000 13.56 0.00 0.00 5.36
1275 1362 0.030908 GATCTCGAGGTAGTTGCCCG 59.969 60.000 13.56 0.00 0.00 6.13
1276 1363 2.017559 ATCTCGAGGTAGTTGCCCGC 62.018 60.000 13.56 0.00 0.00 6.13
1277 1364 2.678934 TCGAGGTAGTTGCCCGCT 60.679 61.111 0.00 0.00 0.00 5.52
1278 1365 2.202756 CGAGGTAGTTGCCCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
1279 1366 2.187163 GAGGTAGTTGCCCGCTCC 59.813 66.667 0.00 0.00 0.00 4.70
1280 1367 3.387225 GAGGTAGTTGCCCGCTCCC 62.387 68.421 0.00 0.00 0.00 4.30
1281 1368 4.484872 GGTAGTTGCCCGCTCCCC 62.485 72.222 0.00 0.00 0.00 4.81
1282 1369 4.832608 GTAGTTGCCCGCTCCCCG 62.833 72.222 0.00 0.00 0.00 5.73
1308 1395 2.881352 CGCTCCCGACGCTTTCTC 60.881 66.667 0.00 0.00 36.29 2.87
1329 1416 0.322546 CCCCTTTTTCTCCACCCTCG 60.323 60.000 0.00 0.00 0.00 4.63
1347 1434 2.279120 CGCTTGTTTGGCGCCAAA 60.279 55.556 42.91 42.91 45.83 3.28
1348 1435 2.302230 CGCTTGTTTGGCGCCAAAG 61.302 57.895 45.93 36.35 45.16 2.77
1349 1436 1.955663 GCTTGTTTGGCGCCAAAGG 60.956 57.895 45.93 36.42 45.16 3.11
1350 1437 1.300853 CTTGTTTGGCGCCAAAGGG 60.301 57.895 45.93 33.79 45.16 3.95
1390 1477 3.268034 TTGGTTAGGATTTGGGGCTTT 57.732 42.857 0.00 0.00 0.00 3.51
1500 1587 6.293135 GGGATCTTTTTAGATGCGAATCTGTC 60.293 42.308 16.73 2.97 37.49 3.51
1517 1604 3.261897 TCTGTCTCAGAGGTGGGAAAATC 59.738 47.826 0.00 0.00 33.84 2.17
1519 1606 3.652869 TGTCTCAGAGGTGGGAAAATCTT 59.347 43.478 0.00 0.00 33.84 2.40
1742 1856 4.053983 TGATTCATCTAACTGAGCGATGC 58.946 43.478 0.00 0.00 35.64 3.91
1757 1871 2.483714 GCGATGCTGGTCTTTCCATCTA 60.484 50.000 0.00 0.00 46.12 1.98
1760 1874 3.334583 TGCTGGTCTTTCCATCTACAC 57.665 47.619 0.00 0.00 46.12 2.90
1798 1917 6.348498 TGAGTTATTGTGCAGCATATAGTGT 58.652 36.000 0.00 0.00 0.00 3.55
1844 1963 5.907207 TGAGATCAGTAAACTGCTATGGAC 58.093 41.667 5.21 0.00 43.46 4.02
1856 1975 3.392882 TGCTATGGACATATGAAGCACG 58.607 45.455 10.38 0.00 0.00 5.34
2009 2131 2.879907 CAAGTGGCGGCCTGATTG 59.120 61.111 21.46 17.01 0.00 2.67
2042 2165 4.013267 ACACTTTGAGGTTCATCTCCAG 57.987 45.455 0.00 0.00 33.04 3.86
2061 2188 3.448686 CAGTTAACTAGTGATGCCGAGG 58.551 50.000 8.04 0.00 0.00 4.63
2160 2288 0.241749 TCTCGATTGCGTACACCGTT 59.758 50.000 0.00 0.00 39.32 4.44
2163 2291 1.225637 GATTGCGTACACCGTTGCG 60.226 57.895 0.00 0.00 39.32 4.85
2421 2554 4.858850 TCATATTTCCTGCCATTCACACT 58.141 39.130 0.00 0.00 0.00 3.55
2475 2608 1.068748 TCTCGCTCAGTGTCGTTAACC 60.069 52.381 0.00 0.00 0.00 2.85
2838 2971 2.866762 GCTGCCTACCTATTTCGAACTG 59.133 50.000 0.00 0.00 0.00 3.16
3207 3340 0.035439 CTGGGATAGTTGGCGTTGGT 60.035 55.000 0.00 0.00 0.00 3.67
3285 3418 3.380320 CCGAAACCTGGAAAACAGTCTTT 59.620 43.478 0.00 0.00 46.06 2.52
3347 3480 4.277515 TCTTGATCTTCTCAACTGGTGG 57.722 45.455 0.00 0.00 38.97 4.61
3429 3566 2.683362 GGCAGGATAGAAAAACGGGAAG 59.317 50.000 0.00 0.00 0.00 3.46
3555 3697 8.859090 AGTAAATTGTGTTTTCTGGAATGATCA 58.141 29.630 0.00 0.00 0.00 2.92
3573 3715 8.689251 AATGATCATACGACTATGTTATTCCG 57.311 34.615 9.04 0.00 32.76 4.30
3603 3745 8.682710 TGTTGATTGGCCTATTTACAACTATTC 58.317 33.333 21.85 5.37 37.56 1.75
3604 3746 7.817418 TGATTGGCCTATTTACAACTATTCC 57.183 36.000 3.32 0.00 0.00 3.01
3642 3787 4.336433 CGGGCATACATCATCTCTGTTTTT 59.664 41.667 0.00 0.00 0.00 1.94
3683 3828 6.431234 GGGATAGGAAATAATGAGAATTGCGT 59.569 38.462 0.00 0.00 0.00 5.24
3723 3868 6.351711 TGACATGTCATTCTTTCTATCCTGG 58.648 40.000 24.56 0.00 34.14 4.45
3727 3872 4.943705 TGTCATTCTTTCTATCCTGGCAAC 59.056 41.667 0.00 0.00 0.00 4.17
3763 3908 6.009589 TGGCAGGATCTGAAAAGAAAATGTA 58.990 36.000 0.00 0.00 32.44 2.29
3826 3972 7.619050 ACATATCATAGCTAAATCTGACTGGG 58.381 38.462 0.00 0.00 0.00 4.45
3835 3981 3.641434 AATCTGACTGGGACATGGAAG 57.359 47.619 0.00 0.00 38.20 3.46
3866 4013 2.095059 GGCTGTGTAGAGGTGCATTTTG 60.095 50.000 0.00 0.00 0.00 2.44
3891 4038 5.774690 TGTTTGATAAACCTGCTGGAAGATT 59.225 36.000 17.64 8.05 40.67 2.40
3901 4048 6.928520 ACCTGCTGGAAGATTTTTATTTCAG 58.071 36.000 17.64 0.00 34.07 3.02
3939 4086 5.876357 TCCCATTTTGTAAGCTGTAGAACT 58.124 37.500 0.00 0.00 0.00 3.01
3968 4124 2.240918 TCCCTGGCAAGCTGGGATT 61.241 57.895 17.65 0.00 44.37 3.01
3969 4125 1.305549 CCCTGGCAAGCTGGGATTT 60.306 57.895 15.13 0.00 43.47 2.17
3970 4126 0.906282 CCCTGGCAAGCTGGGATTTT 60.906 55.000 15.13 0.00 43.47 1.82
3971 4127 0.978907 CCTGGCAAGCTGGGATTTTT 59.021 50.000 0.00 0.00 0.00 1.94
4004 4160 8.680707 TTTTTAAACAAAGGCAAAAGATTTGC 57.319 26.923 17.18 17.18 44.22 3.68
4016 4172 7.599630 GCAAAAGATTTGCCTCATTCATTAA 57.400 32.000 15.12 0.00 39.38 1.40
4017 4173 8.205131 GCAAAAGATTTGCCTCATTCATTAAT 57.795 30.769 15.12 0.00 39.38 1.40
4018 4174 8.671028 GCAAAAGATTTGCCTCATTCATTAATT 58.329 29.630 15.12 0.00 39.38 1.40
4026 4182 9.685276 TTTGCCTCATTCATTAATTAAGAGAGA 57.315 29.630 11.18 2.12 0.00 3.10
4027 4183 9.685276 TTGCCTCATTCATTAATTAAGAGAGAA 57.315 29.630 11.18 9.15 0.00 2.87
4028 4184 9.685276 TGCCTCATTCATTAATTAAGAGAGAAA 57.315 29.630 11.18 0.00 0.00 2.52
4043 4199 6.207691 AGAGAGAAAGAGAGTTCATAGTGC 57.792 41.667 0.00 0.00 0.00 4.40
4044 4200 5.714333 AGAGAGAAAGAGAGTTCATAGTGCA 59.286 40.000 0.00 0.00 0.00 4.57
4045 4201 6.210385 AGAGAGAAAGAGAGTTCATAGTGCAA 59.790 38.462 0.00 0.00 0.00 4.08
4046 4202 6.945218 AGAGAAAGAGAGTTCATAGTGCAAT 58.055 36.000 0.00 0.00 0.00 3.56
4047 4203 8.072321 AGAGAAAGAGAGTTCATAGTGCAATA 57.928 34.615 0.00 0.00 0.00 1.90
4048 4204 7.978975 AGAGAAAGAGAGTTCATAGTGCAATAC 59.021 37.037 0.00 0.00 0.00 1.89
4049 4205 7.615403 AGAAAGAGAGTTCATAGTGCAATACA 58.385 34.615 0.00 0.00 0.00 2.29
4050 4206 8.263640 AGAAAGAGAGTTCATAGTGCAATACAT 58.736 33.333 0.00 0.00 0.00 2.29
4051 4207 8.430801 AAAGAGAGTTCATAGTGCAATACATC 57.569 34.615 0.00 0.00 0.00 3.06
4052 4208 6.212235 AGAGAGTTCATAGTGCAATACATCG 58.788 40.000 0.00 0.00 0.00 3.84
4053 4209 5.292765 AGAGTTCATAGTGCAATACATCGG 58.707 41.667 0.00 0.00 0.00 4.18
4054 4210 3.809832 AGTTCATAGTGCAATACATCGGC 59.190 43.478 0.00 0.00 0.00 5.54
4055 4211 3.751479 TCATAGTGCAATACATCGGCT 57.249 42.857 0.00 0.00 0.00 5.52
4056 4212 3.653344 TCATAGTGCAATACATCGGCTC 58.347 45.455 0.00 0.00 0.00 4.70
4057 4213 2.134201 TAGTGCAATACATCGGCTCG 57.866 50.000 0.00 0.00 0.00 5.03
4058 4214 0.459899 AGTGCAATACATCGGCTCGA 59.540 50.000 0.00 0.00 41.13 4.04
4059 4215 0.577269 GTGCAATACATCGGCTCGAC 59.423 55.000 0.00 0.00 39.18 4.20
4060 4216 0.174617 TGCAATACATCGGCTCGACA 59.825 50.000 0.00 0.00 39.18 4.35
4061 4217 1.286501 GCAATACATCGGCTCGACAA 58.713 50.000 0.00 0.00 39.18 3.18
4062 4218 1.004927 GCAATACATCGGCTCGACAAC 60.005 52.381 0.00 0.00 39.18 3.32
4063 4219 2.267426 CAATACATCGGCTCGACAACA 58.733 47.619 0.00 0.00 39.18 3.33
4064 4220 2.866156 CAATACATCGGCTCGACAACAT 59.134 45.455 0.00 0.00 39.18 2.71
4065 4221 4.048504 CAATACATCGGCTCGACAACATA 58.951 43.478 0.00 0.00 39.18 2.29
4066 4222 2.209838 ACATCGGCTCGACAACATAG 57.790 50.000 0.00 0.00 39.18 2.23
4067 4223 0.855349 CATCGGCTCGACAACATAGC 59.145 55.000 0.00 0.00 39.18 2.97
4070 4226 3.706140 GCTCGACAACATAGCCCG 58.294 61.111 0.00 0.00 0.00 6.13
4071 4227 1.153628 GCTCGACAACATAGCCCGT 60.154 57.895 0.00 0.00 0.00 5.28
4072 4228 1.146358 GCTCGACAACATAGCCCGTC 61.146 60.000 0.00 0.00 0.00 4.79
4073 4229 0.172578 CTCGACAACATAGCCCGTCA 59.827 55.000 0.00 0.00 0.00 4.35
4074 4230 0.172578 TCGACAACATAGCCCGTCAG 59.827 55.000 0.00 0.00 0.00 3.51
4075 4231 0.108804 CGACAACATAGCCCGTCAGT 60.109 55.000 0.00 0.00 0.00 3.41
4076 4232 1.133598 CGACAACATAGCCCGTCAGTA 59.866 52.381 0.00 0.00 0.00 2.74
4077 4233 2.537401 GACAACATAGCCCGTCAGTAC 58.463 52.381 0.00 0.00 0.00 2.73
4078 4234 1.897133 ACAACATAGCCCGTCAGTACA 59.103 47.619 0.00 0.00 0.00 2.90
4079 4235 2.300723 ACAACATAGCCCGTCAGTACAA 59.699 45.455 0.00 0.00 0.00 2.41
4080 4236 2.930040 CAACATAGCCCGTCAGTACAAG 59.070 50.000 0.00 0.00 0.00 3.16
4081 4237 1.134788 ACATAGCCCGTCAGTACAAGC 60.135 52.381 0.00 0.00 0.00 4.01
4082 4238 1.137086 CATAGCCCGTCAGTACAAGCT 59.863 52.381 0.00 0.00 37.39 3.74
4083 4239 0.530744 TAGCCCGTCAGTACAAGCTG 59.469 55.000 0.00 0.00 35.73 4.24
4084 4240 1.741770 GCCCGTCAGTACAAGCTGG 60.742 63.158 0.00 0.00 37.12 4.85
4085 4241 1.079127 CCCGTCAGTACAAGCTGGG 60.079 63.158 0.00 0.00 37.12 4.45
4086 4242 1.541310 CCCGTCAGTACAAGCTGGGA 61.541 60.000 0.00 0.00 37.12 4.37
4087 4243 0.537188 CCGTCAGTACAAGCTGGGAT 59.463 55.000 0.00 0.00 37.12 3.85
4097 4253 0.323178 AAGCTGGGATGTGAAGCCTG 60.323 55.000 0.00 0.00 37.68 4.85
4105 4261 0.833287 ATGTGAAGCCTGCTATCGGT 59.167 50.000 0.00 0.00 0.00 4.69
4112 4268 0.037790 GCCTGCTATCGGTGGAGATC 60.038 60.000 0.00 0.00 32.39 2.75
4158 4315 6.560253 TTTTCTACTGCCTCTTTGATTCAC 57.440 37.500 0.00 0.00 0.00 3.18
4196 4353 8.103305 ACCACATGAATAGGATATGGTTACATC 58.897 37.037 0.00 0.00 35.43 3.06
4211 4368 5.880332 TGGTTACATCTGCAAAATAGAGGAC 59.120 40.000 0.00 0.00 30.99 3.85
4219 4376 6.061441 TCTGCAAAATAGAGGACTGTGAAAA 58.939 36.000 0.00 0.00 0.00 2.29
4281 4438 9.110502 GGAATAGGAAAAACACAGTAATCCTAG 57.889 37.037 5.67 0.00 41.45 3.02
4420 5023 4.393680 CACCGGATTGTAAAATTCCTTCGA 59.606 41.667 9.46 0.00 0.00 3.71
4501 5105 9.767228 CAATGCTTTGGATCAAATGGATAAATA 57.233 29.630 3.55 0.00 36.00 1.40
4514 5121 8.362639 CAAATGGATAAATAGTGGGAAATCCTG 58.637 37.037 0.00 0.00 35.08 3.86
4527 5134 4.645136 GGGAAATCCTGTTCCTATGGTTTC 59.355 45.833 4.10 0.00 45.56 2.78
4534 5141 4.100707 TGTTCCTATGGTTTCTCGTACG 57.899 45.455 9.53 9.53 0.00 3.67
4539 5146 3.550678 CCTATGGTTTCTCGTACGCTTTC 59.449 47.826 11.24 0.00 0.00 2.62
4545 5152 3.921119 TTCTCGTACGCTTTCCTTACA 57.079 42.857 11.24 0.00 0.00 2.41
4563 5170 3.213206 ACAAATCACAGAGACCAGCAA 57.787 42.857 0.00 0.00 0.00 3.91
4616 5224 3.435327 CGCTTTGCAACCAGTACTCATTA 59.565 43.478 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 3.625764 TGTAGCAAAATCTATGCCGGTTC 59.374 43.478 1.90 0.00 44.91 3.62
329 377 6.957920 TTCAACCAGATGATAGAGAGAGAG 57.042 41.667 0.00 0.00 0.00 3.20
330 378 6.894654 AGTTTCAACCAGATGATAGAGAGAGA 59.105 38.462 0.00 0.00 0.00 3.10
331 379 7.111247 AGTTTCAACCAGATGATAGAGAGAG 57.889 40.000 0.00 0.00 0.00 3.20
843 918 6.753279 CGATTTACCTCTGTATTAACCGTCAA 59.247 38.462 0.00 0.00 0.00 3.18
879 954 3.894547 AAGTTTCGGCCGGTCGCAT 62.895 57.895 26.77 6.10 40.31 4.73
932 1007 3.808174 GTGCGTAGTTGGGGAGATTAATC 59.192 47.826 7.41 7.41 0.00 1.75
937 1012 1.255667 ACGTGCGTAGTTGGGGAGAT 61.256 55.000 0.00 0.00 0.00 2.75
938 1013 1.904865 ACGTGCGTAGTTGGGGAGA 60.905 57.895 0.00 0.00 0.00 3.71
939 1014 1.736645 CACGTGCGTAGTTGGGGAG 60.737 63.158 0.82 0.00 0.00 4.30
940 1015 2.340809 CACGTGCGTAGTTGGGGA 59.659 61.111 0.82 0.00 0.00 4.81
941 1016 3.419759 GCACGTGCGTAGTTGGGG 61.420 66.667 26.77 0.00 0.00 4.96
979 1054 2.120909 CATCGGCACCATTCCCACC 61.121 63.158 0.00 0.00 0.00 4.61
980 1055 0.679640 TTCATCGGCACCATTCCCAC 60.680 55.000 0.00 0.00 0.00 4.61
981 1056 0.679640 GTTCATCGGCACCATTCCCA 60.680 55.000 0.00 0.00 0.00 4.37
982 1057 0.679640 TGTTCATCGGCACCATTCCC 60.680 55.000 0.00 0.00 0.00 3.97
983 1058 0.734889 CTGTTCATCGGCACCATTCC 59.265 55.000 0.00 0.00 0.00 3.01
984 1059 1.453155 ACTGTTCATCGGCACCATTC 58.547 50.000 0.00 0.00 0.00 2.67
1092 1169 4.868116 GGCGGTGTGGTGTGGTGT 62.868 66.667 0.00 0.00 0.00 4.16
1219 1306 3.011517 CCTCCTGTGGGGACTGGG 61.012 72.222 0.00 0.00 39.58 4.45
1295 1382 4.468689 GGGGGAGAAAGCGTCGGG 62.469 72.222 0.00 0.00 0.00 5.14
1323 1410 2.978010 CCAAACAAGCGCGAGGGT 60.978 61.111 12.10 0.00 0.00 4.34
1343 1430 0.607489 CACACTCTCCAGCCCTTTGG 60.607 60.000 0.00 0.00 39.70 3.28
1344 1431 0.397941 TCACACTCTCCAGCCCTTTG 59.602 55.000 0.00 0.00 0.00 2.77
1345 1432 0.398318 GTCACACTCTCCAGCCCTTT 59.602 55.000 0.00 0.00 0.00 3.11
1346 1433 1.821061 CGTCACACTCTCCAGCCCTT 61.821 60.000 0.00 0.00 0.00 3.95
1347 1434 2.279069 CGTCACACTCTCCAGCCCT 61.279 63.158 0.00 0.00 0.00 5.19
1348 1435 1.816863 TTCGTCACACTCTCCAGCCC 61.817 60.000 0.00 0.00 0.00 5.19
1349 1436 0.247736 ATTCGTCACACTCTCCAGCC 59.752 55.000 0.00 0.00 0.00 4.85
1350 1437 2.086054 AATTCGTCACACTCTCCAGC 57.914 50.000 0.00 0.00 0.00 4.85
1351 1438 3.187227 CCAAAATTCGTCACACTCTCCAG 59.813 47.826 0.00 0.00 0.00 3.86
1352 1439 3.138304 CCAAAATTCGTCACACTCTCCA 58.862 45.455 0.00 0.00 0.00 3.86
1390 1477 2.158608 TCGCCCAGAGATCTGATACTCA 60.159 50.000 11.44 0.00 46.59 3.41
1500 1587 4.292186 TCAAGATTTTCCCACCTCTGAG 57.708 45.455 0.00 0.00 0.00 3.35
1517 1604 1.944430 GCCCAAGTAGGTCGGTTCAAG 60.944 57.143 0.00 0.00 34.66 3.02
1519 1606 1.675219 GCCCAAGTAGGTCGGTTCA 59.325 57.895 0.00 0.00 34.66 3.18
1798 1917 5.016051 TGAGCAATTTAACACAGGCAAAA 57.984 34.783 0.00 0.00 0.00 2.44
1844 1963 2.554142 TCTTCAGCCGTGCTTCATATG 58.446 47.619 0.00 0.00 36.40 1.78
2009 2131 3.743396 CCTCAAAGTGTTGTAGCAGTCTC 59.257 47.826 0.00 0.00 36.07 3.36
2042 2165 3.795623 TCCTCGGCATCACTAGTTAAC 57.204 47.619 0.00 0.00 0.00 2.01
2061 2188 1.534729 AACGCTTTGGGACCTTCATC 58.465 50.000 0.00 0.00 0.00 2.92
2160 2288 0.101579 CATTGATTGCATCAGCCGCA 59.898 50.000 0.00 0.00 40.94 5.69
2163 2291 3.513680 TTCACATTGATTGCATCAGCC 57.486 42.857 0.00 0.00 40.94 4.85
2178 2306 2.224018 GCCCTTGTTTGCTTGATTCACA 60.224 45.455 0.00 0.00 0.00 3.58
2421 2554 1.228521 CACCCATTGTGCCAGGACA 60.229 57.895 0.00 0.00 38.34 4.02
2475 2608 0.747255 CGAGGTACATCCCTGAGGTG 59.253 60.000 1.23 0.00 34.03 4.00
2838 2971 1.153066 GAGGCTGAGCTTAAGGGCC 60.153 63.158 3.72 0.00 42.74 5.80
3114 3247 3.693085 GAGCAACATCCATGTGATTCACT 59.307 43.478 17.26 1.18 41.61 3.41
3207 3340 3.388024 CCTCCAGAATATTTCCCGTGAGA 59.612 47.826 0.00 0.00 0.00 3.27
3285 3418 4.098914 ACAGAGGTATGCTGGAACAAAA 57.901 40.909 0.00 0.00 38.70 2.44
3347 3480 8.614469 AATCATCCTCTATTCGAAAATCTTCC 57.386 34.615 0.00 0.00 0.00 3.46
3555 3697 5.221382 ACAAGCCGGAATAACATAGTCGTAT 60.221 40.000 5.05 0.00 0.00 3.06
3573 3715 3.893326 AAATAGGCCAATCAACAAGCC 57.107 42.857 5.01 0.00 46.13 4.35
3603 3745 4.909696 TGCCCGATAAATTACACAATGG 57.090 40.909 0.00 0.00 0.00 3.16
3604 3746 6.964908 TGTATGCCCGATAAATTACACAATG 58.035 36.000 0.00 0.00 0.00 2.82
3674 3819 4.440802 CCTGACTTCTAGCTACGCAATTCT 60.441 45.833 0.00 0.00 0.00 2.40
3683 3828 8.345351 ATGACATGTCATCCTGACTTCTAGCTA 61.345 40.741 31.28 4.05 46.57 3.32
3706 3851 5.178096 TGTTGCCAGGATAGAAAGAATGA 57.822 39.130 0.00 0.00 0.00 2.57
3715 3860 2.292267 AGCGAAATGTTGCCAGGATAG 58.708 47.619 0.00 0.00 0.00 2.08
3727 3872 1.153901 CCTGCCAGCAAGCGAAATG 60.154 57.895 0.00 0.00 34.65 2.32
3732 3877 2.124819 AGATCCTGCCAGCAAGCG 60.125 61.111 0.00 0.00 34.65 4.68
3734 3879 1.830279 TTTCAGATCCTGCCAGCAAG 58.170 50.000 0.00 0.00 0.00 4.01
3802 3948 7.763528 GTCCCAGTCAGATTTAGCTATGATATG 59.236 40.741 0.00 0.19 0.00 1.78
3803 3949 7.455953 TGTCCCAGTCAGATTTAGCTATGATAT 59.544 37.037 0.00 0.00 0.00 1.63
3826 3972 1.467920 CAAAGGGAGCCTTCCATGTC 58.532 55.000 0.00 0.00 43.92 3.06
3835 3981 0.678048 CTACACAGCCAAAGGGAGCC 60.678 60.000 0.00 0.00 35.59 4.70
3866 4013 4.518970 TCTTCCAGCAGGTTTATCAAACAC 59.481 41.667 0.00 0.00 43.15 3.32
3901 4048 6.436218 ACAAAATGGGATCCCTTTAGTTACAC 59.564 38.462 31.05 0.60 36.94 2.90
3913 4060 5.437060 TCTACAGCTTACAAAATGGGATCC 58.563 41.667 1.92 1.92 0.00 3.36
3939 4086 3.089838 CCAGGGATGAGGGCACAA 58.910 61.111 0.00 0.00 0.00 3.33
3979 4135 8.680707 GCAAATCTTTTGCCTTTGTTTAAAAA 57.319 26.923 12.74 0.00 39.38 1.94
3992 4148 7.599630 TTAATGAATGAGGCAAATCTTTTGC 57.400 32.000 14.88 14.88 44.22 3.68
4000 4156 9.685276 TCTCTCTTAATTAATGAATGAGGCAAA 57.315 29.630 12.27 0.00 0.00 3.68
4001 4157 9.685276 TTCTCTCTTAATTAATGAATGAGGCAA 57.315 29.630 12.27 3.43 0.00 4.52
4002 4158 9.685276 TTTCTCTCTTAATTAATGAATGAGGCA 57.315 29.630 12.27 0.00 0.00 4.75
4017 4173 8.247562 GCACTATGAACTCTCTTTCTCTCTTAA 58.752 37.037 0.00 0.00 0.00 1.85
4018 4174 7.394641 TGCACTATGAACTCTCTTTCTCTCTTA 59.605 37.037 0.00 0.00 0.00 2.10
4019 4175 6.210385 TGCACTATGAACTCTCTTTCTCTCTT 59.790 38.462 0.00 0.00 0.00 2.85
4020 4176 5.714333 TGCACTATGAACTCTCTTTCTCTCT 59.286 40.000 0.00 0.00 0.00 3.10
4021 4177 5.960113 TGCACTATGAACTCTCTTTCTCTC 58.040 41.667 0.00 0.00 0.00 3.20
4022 4178 5.991933 TGCACTATGAACTCTCTTTCTCT 57.008 39.130 0.00 0.00 0.00 3.10
4023 4179 7.761704 TGTATTGCACTATGAACTCTCTTTCTC 59.238 37.037 0.00 0.00 0.00 2.87
4024 4180 7.615403 TGTATTGCACTATGAACTCTCTTTCT 58.385 34.615 0.00 0.00 0.00 2.52
4025 4181 7.834068 TGTATTGCACTATGAACTCTCTTTC 57.166 36.000 0.00 0.00 0.00 2.62
4026 4182 7.223582 CGATGTATTGCACTATGAACTCTCTTT 59.776 37.037 0.00 0.00 0.00 2.52
4027 4183 6.699204 CGATGTATTGCACTATGAACTCTCTT 59.301 38.462 0.00 0.00 0.00 2.85
4028 4184 6.212235 CGATGTATTGCACTATGAACTCTCT 58.788 40.000 0.00 0.00 0.00 3.10
4029 4185 5.403766 CCGATGTATTGCACTATGAACTCTC 59.596 44.000 0.00 0.00 0.00 3.20
4030 4186 5.292765 CCGATGTATTGCACTATGAACTCT 58.707 41.667 0.00 0.00 0.00 3.24
4031 4187 4.084328 GCCGATGTATTGCACTATGAACTC 60.084 45.833 0.00 0.00 0.00 3.01
4032 4188 3.809832 GCCGATGTATTGCACTATGAACT 59.190 43.478 0.00 0.00 0.00 3.01
4033 4189 3.809832 AGCCGATGTATTGCACTATGAAC 59.190 43.478 0.00 0.00 0.00 3.18
4034 4190 4.058124 GAGCCGATGTATTGCACTATGAA 58.942 43.478 0.00 0.00 0.00 2.57
4035 4191 3.653344 GAGCCGATGTATTGCACTATGA 58.347 45.455 0.00 0.00 0.00 2.15
4036 4192 2.409715 CGAGCCGATGTATTGCACTATG 59.590 50.000 0.00 0.00 0.00 2.23
4037 4193 2.296190 TCGAGCCGATGTATTGCACTAT 59.704 45.455 0.00 0.00 0.00 2.12
4038 4194 1.679153 TCGAGCCGATGTATTGCACTA 59.321 47.619 0.00 0.00 0.00 2.74
4039 4195 0.459899 TCGAGCCGATGTATTGCACT 59.540 50.000 0.00 0.00 0.00 4.40
4040 4196 0.577269 GTCGAGCCGATGTATTGCAC 59.423 55.000 0.67 0.00 38.42 4.57
4041 4197 0.174617 TGTCGAGCCGATGTATTGCA 59.825 50.000 0.67 0.00 38.42 4.08
4042 4198 1.004927 GTTGTCGAGCCGATGTATTGC 60.005 52.381 0.67 0.00 38.42 3.56
4043 4199 2.267426 TGTTGTCGAGCCGATGTATTG 58.733 47.619 0.67 0.00 38.42 1.90
4044 4200 2.665649 TGTTGTCGAGCCGATGTATT 57.334 45.000 0.67 0.00 38.42 1.89
4045 4201 2.890808 ATGTTGTCGAGCCGATGTAT 57.109 45.000 0.67 0.00 38.42 2.29
4046 4202 2.543031 GCTATGTTGTCGAGCCGATGTA 60.543 50.000 0.67 0.00 38.42 2.29
4047 4203 1.802880 GCTATGTTGTCGAGCCGATGT 60.803 52.381 0.67 0.00 38.42 3.06
4048 4204 0.855349 GCTATGTTGTCGAGCCGATG 59.145 55.000 0.67 0.00 38.42 3.84
4049 4205 0.249489 GGCTATGTTGTCGAGCCGAT 60.249 55.000 0.00 0.00 45.94 4.18
4050 4206 1.141019 GGCTATGTTGTCGAGCCGA 59.859 57.895 0.00 0.00 45.94 5.54
4051 4207 3.706140 GGCTATGTTGTCGAGCCG 58.294 61.111 0.00 0.00 45.94 5.52
4053 4209 1.146358 GACGGGCTATGTTGTCGAGC 61.146 60.000 0.00 0.00 35.39 5.03
4054 4210 0.172578 TGACGGGCTATGTTGTCGAG 59.827 55.000 0.00 0.00 34.11 4.04
4055 4211 0.172578 CTGACGGGCTATGTTGTCGA 59.827 55.000 0.00 0.00 34.11 4.20
4056 4212 0.108804 ACTGACGGGCTATGTTGTCG 60.109 55.000 0.00 0.00 34.11 4.35
4057 4213 2.094390 TGTACTGACGGGCTATGTTGTC 60.094 50.000 0.00 0.00 0.00 3.18
4058 4214 1.897133 TGTACTGACGGGCTATGTTGT 59.103 47.619 0.00 0.00 0.00 3.32
4059 4215 2.665649 TGTACTGACGGGCTATGTTG 57.334 50.000 0.00 0.00 0.00 3.33
4060 4216 2.677037 GCTTGTACTGACGGGCTATGTT 60.677 50.000 0.00 0.00 0.00 2.71
4061 4217 1.134788 GCTTGTACTGACGGGCTATGT 60.135 52.381 0.00 0.00 0.00 2.29
4062 4218 1.137086 AGCTTGTACTGACGGGCTATG 59.863 52.381 0.00 0.00 35.27 2.23
4063 4219 1.137086 CAGCTTGTACTGACGGGCTAT 59.863 52.381 0.00 0.00 40.25 2.97
4064 4220 0.530744 CAGCTTGTACTGACGGGCTA 59.469 55.000 0.00 0.00 40.25 3.93
4065 4221 1.293498 CAGCTTGTACTGACGGGCT 59.707 57.895 0.00 0.00 40.25 5.19
4066 4222 1.741770 CCAGCTTGTACTGACGGGC 60.742 63.158 0.00 0.00 40.25 6.13
4067 4223 1.079127 CCCAGCTTGTACTGACGGG 60.079 63.158 0.00 0.00 40.25 5.28
4068 4224 0.537188 ATCCCAGCTTGTACTGACGG 59.463 55.000 0.00 0.00 40.25 4.79
4069 4225 1.066858 ACATCCCAGCTTGTACTGACG 60.067 52.381 0.00 0.00 40.25 4.35
4070 4226 2.028112 TCACATCCCAGCTTGTACTGAC 60.028 50.000 0.00 0.00 40.25 3.51
4071 4227 2.256306 TCACATCCCAGCTTGTACTGA 58.744 47.619 0.00 0.00 40.25 3.41
4072 4228 2.768253 TCACATCCCAGCTTGTACTG 57.232 50.000 0.00 0.00 37.42 2.74
4073 4229 2.616510 GCTTCACATCCCAGCTTGTACT 60.617 50.000 0.00 0.00 0.00 2.73
4074 4230 1.740025 GCTTCACATCCCAGCTTGTAC 59.260 52.381 0.00 0.00 0.00 2.90
4075 4231 1.340017 GGCTTCACATCCCAGCTTGTA 60.340 52.381 0.00 0.00 33.76 2.41
4076 4232 0.610232 GGCTTCACATCCCAGCTTGT 60.610 55.000 0.00 0.00 33.76 3.16
4077 4233 0.323178 AGGCTTCACATCCCAGCTTG 60.323 55.000 0.00 0.00 33.76 4.01
4078 4234 0.323178 CAGGCTTCACATCCCAGCTT 60.323 55.000 0.00 0.00 33.76 3.74
4079 4235 1.302285 CAGGCTTCACATCCCAGCT 59.698 57.895 0.00 0.00 33.76 4.24
4080 4236 2.413142 GCAGGCTTCACATCCCAGC 61.413 63.158 0.00 0.00 0.00 4.85
4081 4237 0.543277 TAGCAGGCTTCACATCCCAG 59.457 55.000 0.00 0.00 0.00 4.45
4082 4238 1.141657 GATAGCAGGCTTCACATCCCA 59.858 52.381 0.00 0.00 0.00 4.37
4083 4239 1.875576 CGATAGCAGGCTTCACATCCC 60.876 57.143 0.00 0.00 0.00 3.85
4084 4240 1.506493 CGATAGCAGGCTTCACATCC 58.494 55.000 0.00 0.00 0.00 3.51
4085 4241 1.202580 ACCGATAGCAGGCTTCACATC 60.203 52.381 0.00 0.00 0.00 3.06
4086 4242 0.833287 ACCGATAGCAGGCTTCACAT 59.167 50.000 0.00 0.00 0.00 3.21
4087 4243 0.108186 CACCGATAGCAGGCTTCACA 60.108 55.000 0.00 0.00 0.00 3.58
4112 4268 5.982890 AACAGGTGAATGTAAAGGAATGG 57.017 39.130 0.00 0.00 31.70 3.16
4186 4343 6.543831 GTCCTCTATTTTGCAGATGTAACCAT 59.456 38.462 0.00 0.00 0.00 3.55
4196 4353 5.947228 TTTCACAGTCCTCTATTTTGCAG 57.053 39.130 0.00 0.00 0.00 4.41
4211 4368 4.551056 GCACATTTATGCGTTTTCACAG 57.449 40.909 0.00 0.00 35.50 3.66
4233 4390 7.136289 TCCTACGAATCAAACAACCAATTAC 57.864 36.000 0.00 0.00 0.00 1.89
4353 4956 3.871485 TGCACAAAGAACAAGGCAAAAT 58.129 36.364 0.00 0.00 0.00 1.82
4362 4965 7.517614 TTTACATTCCTATGCACAAAGAACA 57.482 32.000 0.00 0.00 35.03 3.18
4431 5034 8.575649 AGAACTTTTCTTTGGTTTGAGTTCTA 57.424 30.769 12.58 0.00 45.75 2.10
4432 5035 7.468141 AGAACTTTTCTTTGGTTTGAGTTCT 57.532 32.000 9.36 9.36 43.98 3.01
4452 5055 7.227049 TGAACCATAGGAAAAATGGAAGAAC 57.773 36.000 9.02 0.00 45.77 3.01
4455 5058 6.536224 GCATTGAACCATAGGAAAAATGGAAG 59.464 38.462 9.02 0.00 45.77 3.46
4459 5062 7.148373 CCAAAGCATTGAACCATAGGAAAAATG 60.148 37.037 2.61 0.00 38.94 2.32
4501 5105 3.203040 CCATAGGAACAGGATTTCCCACT 59.797 47.826 0.00 0.00 45.65 4.00
4514 5121 2.856557 GCGTACGAGAAACCATAGGAAC 59.143 50.000 21.65 0.00 0.00 3.62
4527 5134 4.624024 TGATTTGTAAGGAAAGCGTACGAG 59.376 41.667 21.65 0.00 0.00 4.18
4534 5141 5.106515 GGTCTCTGTGATTTGTAAGGAAAGC 60.107 44.000 0.00 0.00 0.00 3.51
4539 5146 3.686726 GCTGGTCTCTGTGATTTGTAAGG 59.313 47.826 0.00 0.00 0.00 2.69
4545 5152 3.245016 TGGATTGCTGGTCTCTGTGATTT 60.245 43.478 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.