Multiple sequence alignment - TraesCS1D01G331300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G331300 chr1D 100.000 7720 0 0 1 7720 422051143 422058862 0.000000e+00 14257.0
1 TraesCS1D01G331300 chr1D 96.429 168 6 0 276 443 68438732 68438899 2.120000e-70 278.0
2 TraesCS1D01G331300 chr1D 77.596 183 37 4 80 259 494488030 494488211 2.950000e-19 108.0
3 TraesCS1D01G331300 chr1D 80.488 82 15 1 178 259 9652468 9652548 2.330000e-05 62.1
4 TraesCS1D01G331300 chr1B 94.640 7276 230 65 520 7719 571055927 571063118 0.000000e+00 11129.0
5 TraesCS1D01G331300 chr1B 78.282 617 69 35 6433 7019 571065180 571065761 3.450000e-88 337.0
6 TraesCS1D01G331300 chr1B 86.232 138 15 3 7174 7310 571067137 571067271 6.240000e-31 147.0
7 TraesCS1D01G331300 chr1B 95.238 42 1 1 5495 5536 571060862 571060902 1.800000e-06 65.8
8 TraesCS1D01G331300 chr1A 94.395 5602 183 66 2161 7719 518016546 518022059 0.000000e+00 8484.0
9 TraesCS1D01G331300 chr1A 95.300 1681 67 8 446 2114 518014864 518016544 0.000000e+00 2656.0
10 TraesCS1D01G331300 chr5D 98.214 168 3 0 279 446 48669130 48668963 2.110000e-75 294.0
11 TraesCS1D01G331300 chr5D 97.006 167 5 0 277 443 340690589 340690755 1.640000e-71 281.0
12 TraesCS1D01G331300 chr5B 97.041 169 5 0 279 447 457961845 457962013 1.270000e-72 285.0
13 TraesCS1D01G331300 chr2D 96.023 176 5 2 270 443 616968745 616968920 1.270000e-72 285.0
14 TraesCS1D01G331300 chr2D 96.988 166 5 0 279 444 445189990 445189825 5.900000e-71 279.0
15 TraesCS1D01G331300 chr2D 92.929 99 5 2 6347 6443 206681197 206681099 8.080000e-30 143.0
16 TraesCS1D01G331300 chr2D 94.505 91 4 1 6347 6436 617101150 617101060 1.040000e-28 139.0
17 TraesCS1D01G331300 chr2D 89.412 85 7 2 7375 7457 449065572 449065488 1.060000e-18 106.0
18 TraesCS1D01G331300 chr2D 90.541 74 7 0 7375 7448 557267255 557267182 1.770000e-16 99.0
19 TraesCS1D01G331300 chr7D 97.006 167 5 0 277 443 237158607 237158773 1.640000e-71 281.0
20 TraesCS1D01G331300 chr3D 96.988 166 5 0 279 444 526050789 526050624 5.900000e-71 279.0
21 TraesCS1D01G331300 chr2B 92.063 189 13 2 271 458 184370756 184370943 1.650000e-66 265.0
22 TraesCS1D01G331300 chr2B 93.878 98 5 1 6344 6440 260758124 260758221 6.240000e-31 147.0
23 TraesCS1D01G331300 chr2B 93.548 93 5 1 6347 6438 545266792 545266700 3.760000e-28 137.0
24 TraesCS1D01G331300 chr4A 92.079 101 6 2 6344 6443 636663121 636663220 2.900000e-29 141.0
25 TraesCS1D01G331300 chr6B 94.505 91 4 1 6347 6436 537553930 537553840 1.040000e-28 139.0
26 TraesCS1D01G331300 chr2A 94.505 91 4 1 6347 6436 747272264 747272174 1.040000e-28 139.0
27 TraesCS1D01G331300 chr2A 89.412 85 7 2 7375 7457 593655920 593656004 1.060000e-18 106.0
28 TraesCS1D01G331300 chr7B 75.486 257 55 7 1 251 458458921 458459175 1.360000e-22 119.0
29 TraesCS1D01G331300 chr4B 78.977 176 32 5 60 232 408974592 408974765 1.760000e-21 115.0
30 TraesCS1D01G331300 chr7A 89.286 84 9 0 7375 7458 398924505 398924422 1.060000e-18 106.0
31 TraesCS1D01G331300 chr3B 89.873 79 8 0 7376 7454 680423370 680423292 1.370000e-17 102.0
32 TraesCS1D01G331300 chr3B 90.541 74 7 0 7375 7448 126580076 126580149 1.770000e-16 99.0
33 TraesCS1D01G331300 chr5A 90.541 74 6 1 7375 7448 383880477 383880549 6.380000e-16 97.1
34 TraesCS1D01G331300 chr3A 88.312 77 9 0 7375 7451 203993965 203994041 8.250000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G331300 chr1D 422051143 422058862 7719 False 14257.0 14257 100.0000 1 7720 1 chr1D.!!$F3 7719
1 TraesCS1D01G331300 chr1B 571055927 571063118 7191 False 5597.4 11129 94.9390 520 7719 2 chr1B.!!$F1 7199
2 TraesCS1D01G331300 chr1B 571065180 571067271 2091 False 242.0 337 82.2570 6433 7310 2 chr1B.!!$F2 877
3 TraesCS1D01G331300 chr1A 518014864 518022059 7195 False 5570.0 8484 94.8475 446 7719 2 chr1A.!!$F1 7273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 593 0.035458 CAAAGGCGAAGTCCTGTCCT 59.965 55.000 0.00 0.0 34.48 3.85 F
1236 1247 0.882484 TCTGTTGCAATTCGTCGCCA 60.882 50.000 0.59 0.0 0.00 5.69 F
1799 1815 1.270147 ACACGTCTTCCCAGTTACTGC 60.270 52.381 6.88 0.0 0.00 4.40 F
1938 1955 2.312741 TCCATGCCAGGAAGGATTTTCT 59.687 45.455 0.00 0.0 41.22 2.52 F
3021 3043 2.420022 TCAAGCTCATCTTAAAAGGCGC 59.580 45.455 0.00 0.0 32.74 6.53 F
3947 3973 1.757682 TCACGGAAGCTTTGTGGTTT 58.242 45.000 24.14 0.0 36.40 3.27 F
4934 4966 1.318576 CACCCCGTTTTGAGAAAGCT 58.681 50.000 0.00 0.0 0.00 3.74 F
5640 5708 1.336440 TGTGCAAGTGGTGTATGTTGC 59.664 47.619 0.00 0.0 44.53 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 2231 0.533531 GGGGGCGAATAGGTAAACGG 60.534 60.000 0.00 0.00 0.00 4.44 R
3018 3040 0.511221 TTCAGAACTAAGCAACGCGC 59.489 50.000 5.73 0.00 42.91 6.86 R
3019 3041 2.221055 ACTTTCAGAACTAAGCAACGCG 59.779 45.455 3.53 3.53 0.00 6.01 R
3815 3839 1.943116 CTGACAGCGACCCTCTCTGG 61.943 65.000 0.00 0.00 33.75 3.86 R
4058 4084 1.000896 ACCGGCAGGCAAGCTATTT 60.001 52.632 0.00 0.00 42.76 1.40 R
5142 5174 0.313987 GTTCAGGGGGTTTTTCAGCG 59.686 55.000 0.00 0.00 0.00 5.18 R
6055 6123 2.260844 ACATACATCATCCGCCCAAG 57.739 50.000 0.00 0.00 0.00 3.61 R
7296 8682 0.463295 ATCCATCAGCCGTTCTGCAG 60.463 55.000 7.63 7.63 42.56 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.785499 TGCGTCTCGAGTCGTCGG 61.785 66.667 27.85 6.03 46.80 4.79
18 19 3.485431 GCGTCTCGAGTCGTCGGA 61.485 66.667 27.85 6.94 46.80 4.55
19 20 2.696238 CGTCTCGAGTCGTCGGAG 59.304 66.667 21.42 2.30 46.80 4.63
20 21 2.800581 CGTCTCGAGTCGTCGGAGG 61.801 68.421 21.42 10.86 46.80 4.30
21 22 2.125229 TCTCGAGTCGTCGGAGGG 60.125 66.667 13.13 0.00 46.80 4.30
22 23 3.878519 CTCGAGTCGTCGGAGGGC 61.879 72.222 13.12 0.00 46.80 5.19
23 24 4.710167 TCGAGTCGTCGGAGGGCA 62.710 66.667 13.12 0.00 46.80 5.36
24 25 3.518998 CGAGTCGTCGGAGGGCAT 61.519 66.667 3.82 0.00 42.87 4.40
25 26 2.105128 GAGTCGTCGGAGGGCATG 59.895 66.667 5.02 0.00 0.00 4.06
26 27 2.680352 AGTCGTCGGAGGGCATGT 60.680 61.111 5.02 0.00 0.00 3.21
27 28 2.509336 GTCGTCGGAGGGCATGTG 60.509 66.667 0.00 0.00 0.00 3.21
28 29 3.770040 TCGTCGGAGGGCATGTGG 61.770 66.667 0.00 0.00 0.00 4.17
29 30 3.770040 CGTCGGAGGGCATGTGGA 61.770 66.667 0.00 0.00 0.00 4.02
30 31 2.911143 GTCGGAGGGCATGTGGAT 59.089 61.111 0.00 0.00 0.00 3.41
31 32 1.524621 GTCGGAGGGCATGTGGATG 60.525 63.158 0.00 0.00 0.00 3.51
32 33 1.688884 TCGGAGGGCATGTGGATGA 60.689 57.895 0.00 0.00 0.00 2.92
33 34 1.227764 CGGAGGGCATGTGGATGAG 60.228 63.158 0.00 0.00 0.00 2.90
34 35 1.918253 GGAGGGCATGTGGATGAGT 59.082 57.895 0.00 0.00 0.00 3.41
35 36 0.465097 GGAGGGCATGTGGATGAGTG 60.465 60.000 0.00 0.00 0.00 3.51
36 37 0.254178 GAGGGCATGTGGATGAGTGT 59.746 55.000 0.00 0.00 0.00 3.55
37 38 0.254178 AGGGCATGTGGATGAGTGTC 59.746 55.000 0.00 0.00 0.00 3.67
38 39 0.254178 GGGCATGTGGATGAGTGTCT 59.746 55.000 0.00 0.00 0.00 3.41
39 40 1.661341 GGCATGTGGATGAGTGTCTC 58.339 55.000 0.00 0.00 0.00 3.36
40 41 1.209019 GGCATGTGGATGAGTGTCTCT 59.791 52.381 0.00 0.00 0.00 3.10
41 42 2.277969 GCATGTGGATGAGTGTCTCTG 58.722 52.381 0.00 0.00 0.00 3.35
42 43 2.093816 GCATGTGGATGAGTGTCTCTGA 60.094 50.000 0.00 0.00 0.00 3.27
43 44 3.519579 CATGTGGATGAGTGTCTCTGAC 58.480 50.000 0.00 0.00 0.00 3.51
44 45 1.541588 TGTGGATGAGTGTCTCTGACG 59.458 52.381 0.00 0.00 34.95 4.35
45 46 1.813178 GTGGATGAGTGTCTCTGACGA 59.187 52.381 0.00 0.00 34.95 4.20
46 47 2.229062 GTGGATGAGTGTCTCTGACGAA 59.771 50.000 0.00 0.00 34.95 3.85
47 48 3.092301 TGGATGAGTGTCTCTGACGAAT 58.908 45.455 0.00 0.00 34.95 3.34
48 49 3.129462 TGGATGAGTGTCTCTGACGAATC 59.871 47.826 0.00 0.00 34.95 2.52
49 50 3.380004 GGATGAGTGTCTCTGACGAATCT 59.620 47.826 0.00 0.00 34.95 2.40
50 51 3.839051 TGAGTGTCTCTGACGAATCTG 57.161 47.619 0.00 0.00 34.95 2.90
51 52 3.149981 TGAGTGTCTCTGACGAATCTGT 58.850 45.455 0.00 0.00 34.95 3.41
52 53 3.189495 TGAGTGTCTCTGACGAATCTGTC 59.811 47.826 0.00 0.00 39.37 3.51
62 63 2.606275 GAATCTGTCGGGATTCGGC 58.394 57.895 9.55 0.00 41.07 5.54
63 64 0.880718 GAATCTGTCGGGATTCGGCC 60.881 60.000 0.00 0.00 43.91 6.13
64 65 2.644555 AATCTGTCGGGATTCGGCCG 62.645 60.000 22.12 22.12 43.91 6.13
65 66 3.833645 CTGTCGGGATTCGGCCGA 61.834 66.667 27.28 27.28 43.91 5.54
66 67 3.151710 TGTCGGGATTCGGCCGAT 61.152 61.111 31.56 19.14 43.91 4.18
67 68 2.661866 GTCGGGATTCGGCCGATG 60.662 66.667 31.56 16.34 37.55 3.84
68 69 4.602259 TCGGGATTCGGCCGATGC 62.602 66.667 31.56 22.98 39.77 3.91
69 70 4.609018 CGGGATTCGGCCGATGCT 62.609 66.667 31.56 17.12 37.74 3.79
70 71 2.203209 GGGATTCGGCCGATGCTT 60.203 61.111 31.56 14.49 37.74 3.91
71 72 2.546494 GGGATTCGGCCGATGCTTG 61.546 63.158 31.56 0.00 37.74 4.01
72 73 1.819632 GGATTCGGCCGATGCTTGT 60.820 57.895 31.56 10.95 37.74 3.16
73 74 1.643832 GATTCGGCCGATGCTTGTC 59.356 57.895 31.56 15.79 37.74 3.18
74 75 0.811616 GATTCGGCCGATGCTTGTCT 60.812 55.000 31.56 6.19 37.74 3.41
75 76 0.392998 ATTCGGCCGATGCTTGTCTT 60.393 50.000 31.56 2.52 37.74 3.01
76 77 1.019278 TTCGGCCGATGCTTGTCTTC 61.019 55.000 31.56 0.00 37.74 2.87
77 78 2.802667 CGGCCGATGCTTGTCTTCG 61.803 63.158 24.07 0.00 40.69 3.79
78 79 1.741770 GGCCGATGCTTGTCTTCGT 60.742 57.895 0.00 0.00 39.76 3.85
79 80 1.298859 GGCCGATGCTTGTCTTCGTT 61.299 55.000 0.00 0.00 39.76 3.85
80 81 0.179215 GCCGATGCTTGTCTTCGTTG 60.179 55.000 0.00 0.00 39.76 4.10
81 82 0.443869 CCGATGCTTGTCTTCGTTGG 59.556 55.000 0.00 0.00 39.76 3.77
82 83 1.428448 CGATGCTTGTCTTCGTTGGA 58.572 50.000 0.00 0.00 37.51 3.53
83 84 2.002586 CGATGCTTGTCTTCGTTGGAT 58.997 47.619 0.00 0.00 37.51 3.41
84 85 2.416547 CGATGCTTGTCTTCGTTGGATT 59.583 45.455 0.00 0.00 37.51 3.01
85 86 3.120199 CGATGCTTGTCTTCGTTGGATTT 60.120 43.478 0.00 0.00 37.51 2.17
86 87 3.624326 TGCTTGTCTTCGTTGGATTTG 57.376 42.857 0.00 0.00 0.00 2.32
87 88 2.287547 TGCTTGTCTTCGTTGGATTTGC 60.288 45.455 0.00 0.00 0.00 3.68
88 89 2.574322 CTTGTCTTCGTTGGATTTGCG 58.426 47.619 0.00 0.00 0.00 4.85
89 90 1.588674 TGTCTTCGTTGGATTTGCGT 58.411 45.000 0.00 0.00 0.00 5.24
90 91 1.262950 TGTCTTCGTTGGATTTGCGTG 59.737 47.619 0.00 0.00 0.00 5.34
91 92 0.871722 TCTTCGTTGGATTTGCGTGG 59.128 50.000 0.00 0.00 0.00 4.94
92 93 0.871722 CTTCGTTGGATTTGCGTGGA 59.128 50.000 0.00 0.00 0.00 4.02
93 94 1.468520 CTTCGTTGGATTTGCGTGGAT 59.531 47.619 0.00 0.00 0.00 3.41
94 95 1.083489 TCGTTGGATTTGCGTGGATC 58.917 50.000 0.00 0.00 0.00 3.36
95 96 0.801872 CGTTGGATTTGCGTGGATCA 59.198 50.000 0.00 0.00 0.00 2.92
96 97 1.198867 CGTTGGATTTGCGTGGATCAA 59.801 47.619 0.00 0.00 0.00 2.57
97 98 2.728846 CGTTGGATTTGCGTGGATCAAG 60.729 50.000 0.00 0.00 0.00 3.02
98 99 2.198827 TGGATTTGCGTGGATCAAGT 57.801 45.000 0.00 0.00 0.00 3.16
99 100 2.083774 TGGATTTGCGTGGATCAAGTC 58.916 47.619 0.00 0.00 31.82 3.01
100 101 2.290260 TGGATTTGCGTGGATCAAGTCT 60.290 45.455 0.00 0.00 32.78 3.24
101 102 2.749621 GGATTTGCGTGGATCAAGTCTT 59.250 45.455 0.00 0.00 32.78 3.01
102 103 3.181506 GGATTTGCGTGGATCAAGTCTTC 60.182 47.826 0.00 0.00 32.78 2.87
103 104 2.542020 TTGCGTGGATCAAGTCTTCA 57.458 45.000 0.00 0.00 0.00 3.02
104 105 2.768253 TGCGTGGATCAAGTCTTCAT 57.232 45.000 0.00 0.00 0.00 2.57
105 106 3.057969 TGCGTGGATCAAGTCTTCATT 57.942 42.857 0.00 0.00 0.00 2.57
106 107 3.002791 TGCGTGGATCAAGTCTTCATTC 58.997 45.455 0.00 0.00 0.00 2.67
107 108 2.029728 GCGTGGATCAAGTCTTCATTCG 59.970 50.000 0.00 0.00 0.00 3.34
108 109 3.254060 CGTGGATCAAGTCTTCATTCGT 58.746 45.455 0.00 0.00 0.00 3.85
109 110 3.679980 CGTGGATCAAGTCTTCATTCGTT 59.320 43.478 0.00 0.00 0.00 3.85
110 111 4.152402 CGTGGATCAAGTCTTCATTCGTTT 59.848 41.667 0.00 0.00 0.00 3.60
111 112 5.385617 GTGGATCAAGTCTTCATTCGTTTG 58.614 41.667 0.00 0.00 0.00 2.93
112 113 5.049405 GTGGATCAAGTCTTCATTCGTTTGT 60.049 40.000 0.00 0.00 0.00 2.83
113 114 5.530915 TGGATCAAGTCTTCATTCGTTTGTT 59.469 36.000 0.00 0.00 0.00 2.83
114 115 6.080406 GGATCAAGTCTTCATTCGTTTGTTC 58.920 40.000 0.00 0.00 0.00 3.18
115 116 6.073003 GGATCAAGTCTTCATTCGTTTGTTCT 60.073 38.462 0.00 0.00 0.00 3.01
116 117 6.677781 TCAAGTCTTCATTCGTTTGTTCTT 57.322 33.333 0.00 0.00 0.00 2.52
117 118 6.486248 TCAAGTCTTCATTCGTTTGTTCTTG 58.514 36.000 0.00 0.00 0.00 3.02
118 119 6.093495 TCAAGTCTTCATTCGTTTGTTCTTGT 59.907 34.615 0.00 0.00 33.03 3.16
119 120 5.810525 AGTCTTCATTCGTTTGTTCTTGTG 58.189 37.500 0.00 0.00 0.00 3.33
120 121 5.354234 AGTCTTCATTCGTTTGTTCTTGTGT 59.646 36.000 0.00 0.00 0.00 3.72
121 122 5.677178 GTCTTCATTCGTTTGTTCTTGTGTC 59.323 40.000 0.00 0.00 0.00 3.67
122 123 5.584649 TCTTCATTCGTTTGTTCTTGTGTCT 59.415 36.000 0.00 0.00 0.00 3.41
123 124 6.759356 TCTTCATTCGTTTGTTCTTGTGTCTA 59.241 34.615 0.00 0.00 0.00 2.59
124 125 6.281848 TCATTCGTTTGTTCTTGTGTCTAC 57.718 37.500 0.00 0.00 0.00 2.59
125 126 5.813157 TCATTCGTTTGTTCTTGTGTCTACA 59.187 36.000 0.00 0.00 34.31 2.74
126 127 5.712217 TTCGTTTGTTCTTGTGTCTACAG 57.288 39.130 0.00 0.00 38.23 2.74
127 128 5.001237 TCGTTTGTTCTTGTGTCTACAGA 57.999 39.130 0.00 0.00 38.23 3.41
128 129 5.597806 TCGTTTGTTCTTGTGTCTACAGAT 58.402 37.500 0.00 0.00 38.23 2.90
129 130 6.046593 TCGTTTGTTCTTGTGTCTACAGATT 58.953 36.000 0.00 0.00 38.23 2.40
130 131 6.019075 TCGTTTGTTCTTGTGTCTACAGATTG 60.019 38.462 0.00 0.00 38.23 2.67
131 132 6.430451 GTTTGTTCTTGTGTCTACAGATTGG 58.570 40.000 0.00 0.00 38.23 3.16
132 133 5.545063 TGTTCTTGTGTCTACAGATTGGA 57.455 39.130 0.00 0.00 38.23 3.53
133 134 6.114187 TGTTCTTGTGTCTACAGATTGGAT 57.886 37.500 0.00 0.00 38.23 3.41
134 135 6.166279 TGTTCTTGTGTCTACAGATTGGATC 58.834 40.000 0.00 0.00 38.23 3.36
135 136 5.344743 TCTTGTGTCTACAGATTGGATCC 57.655 43.478 4.20 4.20 38.23 3.36
136 137 5.026121 TCTTGTGTCTACAGATTGGATCCT 58.974 41.667 14.23 0.00 38.23 3.24
137 138 5.485353 TCTTGTGTCTACAGATTGGATCCTT 59.515 40.000 14.23 0.00 38.23 3.36
138 139 5.344743 TGTGTCTACAGATTGGATCCTTC 57.655 43.478 14.23 10.08 31.91 3.46
139 140 5.026121 TGTGTCTACAGATTGGATCCTTCT 58.974 41.667 14.23 12.26 31.91 2.85
140 141 5.105187 TGTGTCTACAGATTGGATCCTTCTG 60.105 44.000 29.05 29.05 42.05 3.02
141 142 4.406972 TGTCTACAGATTGGATCCTTCTGG 59.593 45.833 31.55 21.80 40.92 3.86
142 143 4.407296 GTCTACAGATTGGATCCTTCTGGT 59.593 45.833 31.55 23.65 40.92 4.00
143 144 3.922171 ACAGATTGGATCCTTCTGGTC 57.078 47.619 31.55 15.62 40.92 4.02
144 145 3.458831 ACAGATTGGATCCTTCTGGTCT 58.541 45.455 31.55 18.39 40.92 3.85
145 146 4.624913 ACAGATTGGATCCTTCTGGTCTA 58.375 43.478 31.55 4.74 40.92 2.59
146 147 4.407296 ACAGATTGGATCCTTCTGGTCTAC 59.593 45.833 31.55 9.41 40.92 2.59
147 148 3.639094 AGATTGGATCCTTCTGGTCTACG 59.361 47.826 14.23 0.00 34.23 3.51
148 149 2.820728 TGGATCCTTCTGGTCTACGA 57.179 50.000 14.23 0.00 34.23 3.43
149 150 3.314307 TGGATCCTTCTGGTCTACGAT 57.686 47.619 14.23 0.00 34.23 3.73
150 151 3.643237 TGGATCCTTCTGGTCTACGATT 58.357 45.455 14.23 0.00 34.23 3.34
151 152 3.637229 TGGATCCTTCTGGTCTACGATTC 59.363 47.826 14.23 0.00 34.23 2.52
152 153 3.892588 GGATCCTTCTGGTCTACGATTCT 59.107 47.826 3.84 0.00 34.23 2.40
153 154 4.022676 GGATCCTTCTGGTCTACGATTCTC 60.023 50.000 3.84 0.00 34.23 2.87
154 155 4.237976 TCCTTCTGGTCTACGATTCTCT 57.762 45.455 0.00 0.00 34.23 3.10
155 156 4.601084 TCCTTCTGGTCTACGATTCTCTT 58.399 43.478 0.00 0.00 34.23 2.85
156 157 4.641094 TCCTTCTGGTCTACGATTCTCTTC 59.359 45.833 0.00 0.00 34.23 2.87
157 158 4.496673 CCTTCTGGTCTACGATTCTCTTCG 60.497 50.000 0.00 0.00 44.56 3.79
158 159 8.973228 TCCTTCTGGTCTACGATTCTCTTCGT 62.973 46.154 4.81 4.81 43.48 3.85
164 165 2.571528 CGATTCTCTTCGTCAGCGG 58.428 57.895 0.00 0.00 38.89 5.52
165 166 0.179161 CGATTCTCTTCGTCAGCGGT 60.179 55.000 0.00 0.00 38.89 5.68
166 167 1.272781 GATTCTCTTCGTCAGCGGTG 58.727 55.000 8.67 8.67 38.89 4.94
167 168 0.108615 ATTCTCTTCGTCAGCGGTGG 60.109 55.000 15.67 0.00 38.89 4.61
168 169 1.461091 TTCTCTTCGTCAGCGGTGGT 61.461 55.000 15.67 0.00 38.89 4.16
169 170 1.006102 CTCTTCGTCAGCGGTGGTT 60.006 57.895 15.67 0.00 38.89 3.67
170 171 1.006571 TCTTCGTCAGCGGTGGTTC 60.007 57.895 15.67 5.14 38.89 3.62
171 172 2.027625 CTTCGTCAGCGGTGGTTCC 61.028 63.158 15.67 0.00 38.89 3.62
172 173 2.436087 CTTCGTCAGCGGTGGTTCCT 62.436 60.000 15.67 0.00 38.89 3.36
173 174 1.180456 TTCGTCAGCGGTGGTTCCTA 61.180 55.000 15.67 0.00 38.89 2.94
174 175 0.968901 TCGTCAGCGGTGGTTCCTAT 60.969 55.000 15.67 0.00 38.89 2.57
175 176 0.108329 CGTCAGCGGTGGTTCCTATT 60.108 55.000 15.67 0.00 0.00 1.73
176 177 1.653151 GTCAGCGGTGGTTCCTATTC 58.347 55.000 15.67 0.00 0.00 1.75
177 178 1.207329 GTCAGCGGTGGTTCCTATTCT 59.793 52.381 15.67 0.00 0.00 2.40
178 179 1.207089 TCAGCGGTGGTTCCTATTCTG 59.793 52.381 15.67 0.00 0.00 3.02
179 180 1.066143 CAGCGGTGGTTCCTATTCTGT 60.066 52.381 6.74 0.00 0.00 3.41
180 181 1.066143 AGCGGTGGTTCCTATTCTGTG 60.066 52.381 0.00 0.00 0.00 3.66
181 182 1.338769 GCGGTGGTTCCTATTCTGTGT 60.339 52.381 0.00 0.00 0.00 3.72
182 183 2.346803 CGGTGGTTCCTATTCTGTGTG 58.653 52.381 0.00 0.00 0.00 3.82
183 184 2.084546 GGTGGTTCCTATTCTGTGTGC 58.915 52.381 0.00 0.00 0.00 4.57
184 185 2.290323 GGTGGTTCCTATTCTGTGTGCT 60.290 50.000 0.00 0.00 0.00 4.40
185 186 2.744202 GTGGTTCCTATTCTGTGTGCTG 59.256 50.000 0.00 0.00 0.00 4.41
186 187 2.290260 TGGTTCCTATTCTGTGTGCTGG 60.290 50.000 0.00 0.00 0.00 4.85
187 188 2.290323 GGTTCCTATTCTGTGTGCTGGT 60.290 50.000 0.00 0.00 0.00 4.00
188 189 3.003480 GTTCCTATTCTGTGTGCTGGTC 58.997 50.000 0.00 0.00 0.00 4.02
189 190 1.555075 TCCTATTCTGTGTGCTGGTCC 59.445 52.381 0.00 0.00 0.00 4.46
190 191 1.556911 CCTATTCTGTGTGCTGGTCCT 59.443 52.381 0.00 0.00 0.00 3.85
191 192 2.026822 CCTATTCTGTGTGCTGGTCCTT 60.027 50.000 0.00 0.00 0.00 3.36
192 193 2.664402 ATTCTGTGTGCTGGTCCTTT 57.336 45.000 0.00 0.00 0.00 3.11
193 194 1.679139 TTCTGTGTGCTGGTCCTTTG 58.321 50.000 0.00 0.00 0.00 2.77
194 195 0.546122 TCTGTGTGCTGGTCCTTTGT 59.454 50.000 0.00 0.00 0.00 2.83
195 196 0.664761 CTGTGTGCTGGTCCTTTGTG 59.335 55.000 0.00 0.00 0.00 3.33
196 197 0.751277 TGTGTGCTGGTCCTTTGTGG 60.751 55.000 0.00 0.00 37.10 4.17
197 198 0.751643 GTGTGCTGGTCCTTTGTGGT 60.752 55.000 0.00 0.00 37.07 4.16
198 199 0.465460 TGTGCTGGTCCTTTGTGGTC 60.465 55.000 0.00 0.00 37.07 4.02
199 200 0.179018 GTGCTGGTCCTTTGTGGTCT 60.179 55.000 0.00 0.00 37.07 3.85
200 201 0.108585 TGCTGGTCCTTTGTGGTCTC 59.891 55.000 0.00 0.00 37.07 3.36
201 202 0.108585 GCTGGTCCTTTGTGGTCTCA 59.891 55.000 0.00 0.00 37.07 3.27
202 203 1.879796 GCTGGTCCTTTGTGGTCTCAG 60.880 57.143 0.00 0.00 37.07 3.35
203 204 0.108585 TGGTCCTTTGTGGTCTCAGC 59.891 55.000 0.00 0.00 37.07 4.26
204 205 0.108585 GGTCCTTTGTGGTCTCAGCA 59.891 55.000 0.00 0.00 37.07 4.41
205 206 1.230324 GTCCTTTGTGGTCTCAGCAC 58.770 55.000 0.00 0.00 46.05 4.40
210 211 2.643272 GTGGTCTCAGCACGACGA 59.357 61.111 0.00 0.00 36.84 4.20
211 212 1.729838 GTGGTCTCAGCACGACGAC 60.730 63.158 0.00 0.00 36.84 4.34
212 213 1.897137 TGGTCTCAGCACGACGACT 60.897 57.895 0.00 0.00 32.24 4.18
213 214 1.286260 GGTCTCAGCACGACGACTT 59.714 57.895 0.00 0.00 32.24 3.01
214 215 0.729816 GGTCTCAGCACGACGACTTC 60.730 60.000 0.00 0.00 32.24 3.01
215 216 0.729816 GTCTCAGCACGACGACTTCC 60.730 60.000 0.00 0.00 0.00 3.46
216 217 1.444553 CTCAGCACGACGACTTCCC 60.445 63.158 0.00 0.00 0.00 3.97
217 218 2.805353 CAGCACGACGACTTCCCG 60.805 66.667 0.00 0.00 0.00 5.14
218 219 2.981909 AGCACGACGACTTCCCGA 60.982 61.111 0.00 0.00 0.00 5.14
219 220 2.804090 GCACGACGACTTCCCGAC 60.804 66.667 0.00 0.00 0.00 4.79
220 221 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
221 222 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
222 223 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
223 224 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
224 225 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
225 226 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
226 227 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
227 228 0.096628 CGACTTCCCGACTGTCTACG 59.903 60.000 6.21 0.00 0.00 3.51
228 229 1.446907 GACTTCCCGACTGTCTACGA 58.553 55.000 6.21 0.00 0.00 3.43
229 230 1.130186 GACTTCCCGACTGTCTACGAC 59.870 57.143 6.21 0.00 0.00 4.34
230 231 1.162698 CTTCCCGACTGTCTACGACA 58.837 55.000 6.21 0.00 40.50 4.35
231 232 1.538512 CTTCCCGACTGTCTACGACAA 59.461 52.381 6.21 0.00 42.26 3.18
232 233 1.608055 TCCCGACTGTCTACGACAAA 58.392 50.000 6.21 0.00 42.26 2.83
233 234 1.955778 TCCCGACTGTCTACGACAAAA 59.044 47.619 6.21 0.00 42.26 2.44
234 235 2.559668 TCCCGACTGTCTACGACAAAAT 59.440 45.455 6.21 0.00 42.26 1.82
235 236 2.666508 CCCGACTGTCTACGACAAAATG 59.333 50.000 6.21 0.00 42.26 2.32
236 237 2.666508 CCGACTGTCTACGACAAAATGG 59.333 50.000 6.21 0.00 42.26 3.16
237 238 3.314553 CGACTGTCTACGACAAAATGGT 58.685 45.455 6.21 0.00 42.26 3.55
238 239 3.739300 CGACTGTCTACGACAAAATGGTT 59.261 43.478 6.21 0.00 42.26 3.67
239 240 4.210537 CGACTGTCTACGACAAAATGGTTT 59.789 41.667 6.21 0.00 42.26 3.27
240 241 5.403166 CGACTGTCTACGACAAAATGGTTTA 59.597 40.000 6.21 0.00 42.26 2.01
241 242 6.535274 ACTGTCTACGACAAAATGGTTTAC 57.465 37.500 0.00 0.00 42.26 2.01
242 243 5.467735 ACTGTCTACGACAAAATGGTTTACC 59.532 40.000 0.00 0.00 42.26 2.85
243 244 4.756135 TGTCTACGACAAAATGGTTTACCC 59.244 41.667 0.00 0.00 39.78 3.69
244 245 3.995705 TCTACGACAAAATGGTTTACCCG 59.004 43.478 0.00 0.00 35.15 5.28
245 246 1.881324 ACGACAAAATGGTTTACCCGG 59.119 47.619 0.00 0.00 35.15 5.73
246 247 1.401800 CGACAAAATGGTTTACCCGGC 60.402 52.381 0.00 0.00 35.15 6.13
247 248 1.890489 GACAAAATGGTTTACCCGGCT 59.110 47.619 0.00 0.00 35.15 5.52
248 249 1.890489 ACAAAATGGTTTACCCGGCTC 59.110 47.619 0.00 0.00 35.15 4.70
249 250 1.203758 CAAAATGGTTTACCCGGCTCC 59.796 52.381 0.00 0.00 35.15 4.70
250 251 0.678684 AAATGGTTTACCCGGCTCCG 60.679 55.000 0.00 0.48 35.15 4.63
260 261 4.186136 CGGCTCCGGTAAGGGATA 57.814 61.111 0.00 0.00 41.52 2.59
261 262 1.965219 CGGCTCCGGTAAGGGATAG 59.035 63.158 0.00 0.00 41.52 2.08
262 263 0.826672 CGGCTCCGGTAAGGGATAGT 60.827 60.000 0.00 0.00 41.52 2.12
263 264 0.967662 GGCTCCGGTAAGGGATAGTC 59.032 60.000 0.00 0.00 41.52 2.59
264 265 1.480869 GGCTCCGGTAAGGGATAGTCT 60.481 57.143 0.00 0.00 41.52 3.24
265 266 1.614413 GCTCCGGTAAGGGATAGTCTG 59.386 57.143 0.00 0.00 41.52 3.51
266 267 2.946785 CTCCGGTAAGGGATAGTCTGT 58.053 52.381 0.00 0.00 41.52 3.41
267 268 3.749954 GCTCCGGTAAGGGATAGTCTGTA 60.750 52.174 0.00 0.00 41.52 2.74
268 269 4.467769 CTCCGGTAAGGGATAGTCTGTAA 58.532 47.826 0.00 0.00 41.52 2.41
269 270 4.870636 TCCGGTAAGGGATAGTCTGTAAA 58.129 43.478 0.00 0.00 41.52 2.01
270 271 5.461327 TCCGGTAAGGGATAGTCTGTAAAT 58.539 41.667 0.00 0.00 41.52 1.40
271 272 6.613699 TCCGGTAAGGGATAGTCTGTAAATA 58.386 40.000 0.00 0.00 41.52 1.40
272 273 7.243824 TCCGGTAAGGGATAGTCTGTAAATAT 58.756 38.462 0.00 0.00 41.52 1.28
273 274 7.177921 TCCGGTAAGGGATAGTCTGTAAATATG 59.822 40.741 0.00 0.00 41.52 1.78
274 275 7.177921 CCGGTAAGGGATAGTCTGTAAATATGA 59.822 40.741 0.00 0.00 35.97 2.15
275 276 8.582437 CGGTAAGGGATAGTCTGTAAATATGAA 58.418 37.037 0.00 0.00 0.00 2.57
285 286 8.554490 AGTCTGTAAATATGAATGTACTCCCT 57.446 34.615 0.00 0.00 28.49 4.20
286 287 8.643324 AGTCTGTAAATATGAATGTACTCCCTC 58.357 37.037 0.00 0.00 28.49 4.30
287 288 7.873505 GTCTGTAAATATGAATGTACTCCCTCC 59.126 40.741 0.00 0.00 28.49 4.30
288 289 6.755206 TGTAAATATGAATGTACTCCCTCCG 58.245 40.000 0.00 0.00 28.49 4.63
289 290 5.888982 AAATATGAATGTACTCCCTCCGT 57.111 39.130 0.00 0.00 0.00 4.69
290 291 5.888982 AATATGAATGTACTCCCTCCGTT 57.111 39.130 0.00 0.00 0.00 4.44
291 292 5.888982 ATATGAATGTACTCCCTCCGTTT 57.111 39.130 0.00 0.00 0.00 3.60
292 293 3.604875 TGAATGTACTCCCTCCGTTTC 57.395 47.619 0.00 0.00 0.00 2.78
293 294 2.901192 TGAATGTACTCCCTCCGTTTCA 59.099 45.455 0.00 0.00 0.00 2.69
294 295 3.325425 TGAATGTACTCCCTCCGTTTCAA 59.675 43.478 0.00 0.00 0.00 2.69
295 296 4.202377 TGAATGTACTCCCTCCGTTTCAAA 60.202 41.667 0.00 0.00 0.00 2.69
296 297 3.842007 TGTACTCCCTCCGTTTCAAAA 57.158 42.857 0.00 0.00 0.00 2.44
297 298 4.360951 TGTACTCCCTCCGTTTCAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
298 299 5.486735 TGTACTCCCTCCGTTTCAAAATA 57.513 39.130 0.00 0.00 0.00 1.40
299 300 6.057321 TGTACTCCCTCCGTTTCAAAATAT 57.943 37.500 0.00 0.00 0.00 1.28
300 301 7.185318 TGTACTCCCTCCGTTTCAAAATATA 57.815 36.000 0.00 0.00 0.00 0.86
301 302 7.622713 TGTACTCCCTCCGTTTCAAAATATAA 58.377 34.615 0.00 0.00 0.00 0.98
302 303 7.767198 TGTACTCCCTCCGTTTCAAAATATAAG 59.233 37.037 0.00 0.00 0.00 1.73
303 304 6.718294 ACTCCCTCCGTTTCAAAATATAAGT 58.282 36.000 0.00 0.00 0.00 2.24
304 305 6.822170 ACTCCCTCCGTTTCAAAATATAAGTC 59.178 38.462 0.00 0.00 0.00 3.01
305 306 6.954232 TCCCTCCGTTTCAAAATATAAGTCT 58.046 36.000 0.00 0.00 0.00 3.24
306 307 7.399634 TCCCTCCGTTTCAAAATATAAGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
307 308 7.886446 TCCCTCCGTTTCAAAATATAAGTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
308 309 8.520351 CCCTCCGTTTCAAAATATAAGTCTTTT 58.480 33.333 0.00 0.00 0.00 2.27
309 310 9.908152 CCTCCGTTTCAAAATATAAGTCTTTTT 57.092 29.630 0.00 0.00 0.00 1.94
327 328 9.396022 AGTCTTTTTAGAGATTTCAACAAGTGA 57.604 29.630 0.00 0.00 0.00 3.41
328 329 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
329 330 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
332 333 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
333 334 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
335 336 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
336 337 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
337 338 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
338 339 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
339 340 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
340 341 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
341 342 2.165845 ACAAGTGACTACATACGGAGCC 59.834 50.000 0.00 0.00 0.00 4.70
342 343 2.139323 AGTGACTACATACGGAGCCA 57.861 50.000 0.00 0.00 0.00 4.75
343 344 2.453521 AGTGACTACATACGGAGCCAA 58.546 47.619 0.00 0.00 0.00 4.52
344 345 2.829720 AGTGACTACATACGGAGCCAAA 59.170 45.455 0.00 0.00 0.00 3.28
345 346 3.451178 AGTGACTACATACGGAGCCAAAT 59.549 43.478 0.00 0.00 0.00 2.32
346 347 4.647853 AGTGACTACATACGGAGCCAAATA 59.352 41.667 0.00 0.00 0.00 1.40
347 348 5.128171 AGTGACTACATACGGAGCCAAATAA 59.872 40.000 0.00 0.00 0.00 1.40
348 349 5.462398 GTGACTACATACGGAGCCAAATAAG 59.538 44.000 0.00 0.00 0.00 1.73
349 350 5.128171 TGACTACATACGGAGCCAAATAAGT 59.872 40.000 0.00 0.00 0.00 2.24
350 351 5.357257 ACTACATACGGAGCCAAATAAGTG 58.643 41.667 0.00 0.00 0.00 3.16
351 352 4.481368 ACATACGGAGCCAAATAAGTGA 57.519 40.909 0.00 0.00 0.00 3.41
352 353 4.839121 ACATACGGAGCCAAATAAGTGAA 58.161 39.130 0.00 0.00 0.00 3.18
353 354 5.437060 ACATACGGAGCCAAATAAGTGAAT 58.563 37.500 0.00 0.00 0.00 2.57
354 355 5.527582 ACATACGGAGCCAAATAAGTGAATC 59.472 40.000 0.00 0.00 0.00 2.52
355 356 4.222124 ACGGAGCCAAATAAGTGAATCT 57.778 40.909 0.00 0.00 0.00 2.40
356 357 5.353394 ACGGAGCCAAATAAGTGAATCTA 57.647 39.130 0.00 0.00 0.00 1.98
357 358 5.930135 ACGGAGCCAAATAAGTGAATCTAT 58.070 37.500 0.00 0.00 0.00 1.98
358 359 7.062749 ACGGAGCCAAATAAGTGAATCTATA 57.937 36.000 0.00 0.00 0.00 1.31
359 360 6.929606 ACGGAGCCAAATAAGTGAATCTATAC 59.070 38.462 0.00 0.00 0.00 1.47
360 361 7.155328 CGGAGCCAAATAAGTGAATCTATACT 58.845 38.462 0.00 0.00 0.00 2.12
361 362 7.329717 CGGAGCCAAATAAGTGAATCTATACTC 59.670 40.741 0.00 0.00 0.00 2.59
362 363 8.371699 GGAGCCAAATAAGTGAATCTATACTCT 58.628 37.037 0.00 0.00 0.00 3.24
398 399 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
399 400 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
400 401 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
401 402 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
402 403 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
403 404 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
404 405 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
405 406 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
406 407 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
407 408 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
408 409 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
409 410 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
410 411 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
411 412 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
412 413 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
413 414 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
414 415 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
438 439 8.515695 AAAAACTTATATTTAGGAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30
439 440 7.441903 AAACTTATATTTAGGAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
440 441 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
441 442 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
442 443 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
443 444 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
444 445 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
497 500 7.010460 TGACATGACGTGTGATGAATAGATTTC 59.990 37.037 4.68 0.00 42.36 2.17
500 503 6.042777 TGACGTGTGATGAATAGATTTCTCC 58.957 40.000 0.00 0.00 0.00 3.71
532 539 0.235926 GCGCAGGAAAAGAGTGTCAC 59.764 55.000 0.30 0.00 0.00 3.67
534 541 1.795286 CGCAGGAAAAGAGTGTCACTC 59.205 52.381 23.11 23.11 45.38 3.51
554 563 1.261619 CTATGATTTGCTCGCGGTTCC 59.738 52.381 6.13 0.00 0.00 3.62
558 567 4.612412 TTGCTCGCGGTTCCGGTT 62.612 61.111 6.13 0.00 0.00 4.44
584 593 0.035458 CAAAGGCGAAGTCCTGTCCT 59.965 55.000 0.00 0.00 34.48 3.85
1203 1214 3.087906 TAGCTCCCGCTTTCCCCC 61.088 66.667 0.00 0.00 46.47 5.40
1236 1247 0.882484 TCTGTTGCAATTCGTCGCCA 60.882 50.000 0.59 0.00 0.00 5.69
1263 1274 8.677300 TCAGAAGCTAATTTGATGTTTATGTCC 58.323 33.333 0.00 0.00 0.00 4.02
1394 1407 1.305046 GACTCTCCGGGGAAGGTCA 60.305 63.158 16.77 0.00 0.00 4.02
1600 1613 2.025887 GGTCATGAGGGAGACATTTGGT 60.026 50.000 0.00 0.00 36.50 3.67
1609 1622 2.203625 ACATTTGGTGGGGCGCTT 60.204 55.556 7.64 0.00 0.00 4.68
1799 1815 1.270147 ACACGTCTTCCCAGTTACTGC 60.270 52.381 6.88 0.00 0.00 4.40
1887 1904 4.517952 TGGAGAAAACGTATGTTCGGTA 57.482 40.909 0.00 0.00 37.31 4.02
1938 1955 2.312741 TCCATGCCAGGAAGGATTTTCT 59.687 45.455 0.00 0.00 41.22 2.52
1971 1988 4.864704 TTTTGGTTGCAAGAATCCCTAC 57.135 40.909 0.00 0.00 0.00 3.18
2014 2031 4.529897 TCCTTTTCCATGACCATCATCAG 58.470 43.478 0.00 0.00 34.28 2.90
2158 2175 8.089115 AGCTTCACTATTGTCTTGTAGTTTTC 57.911 34.615 0.00 0.00 0.00 2.29
2159 2176 7.934120 AGCTTCACTATTGTCTTGTAGTTTTCT 59.066 33.333 0.00 0.00 0.00 2.52
2160 2177 9.204570 GCTTCACTATTGTCTTGTAGTTTTCTA 57.795 33.333 0.00 0.00 0.00 2.10
2213 2231 8.782533 ATTTCTTTTGTTTGTTCTATCGTCAC 57.217 30.769 0.00 0.00 0.00 3.67
2218 2236 4.121317 TGTTTGTTCTATCGTCACCGTTT 58.879 39.130 0.00 0.00 35.01 3.60
2260 2278 6.143206 TCCTCTGTATATCCAATTCCTGTGA 58.857 40.000 0.00 0.00 0.00 3.58
2280 2298 6.231951 TGTGATGTTGCATCCATTTGAATTT 58.768 32.000 6.65 0.00 0.00 1.82
2281 2299 6.147985 TGTGATGTTGCATCCATTTGAATTTG 59.852 34.615 6.65 0.00 0.00 2.32
2400 2418 2.489938 TGTTCATACTCAAGGCACCC 57.510 50.000 0.00 0.00 0.00 4.61
2518 2536 5.508657 GCTTAAAAGGGATTGCTCATGATCC 60.509 44.000 4.71 4.71 40.90 3.36
2540 2558 5.360144 TCCGTTTCTGTTTCCATTTTTGGTA 59.640 36.000 0.00 0.00 0.00 3.25
2686 2706 3.323243 CCACGGTTTAGAGTACTGTTGG 58.677 50.000 0.00 0.00 32.93 3.77
2690 2710 3.985925 CGGTTTAGAGTACTGTTGGACAC 59.014 47.826 0.00 0.00 0.00 3.67
2714 2734 2.849943 TCCAGGTAGGCAATATTGTGGT 59.150 45.455 16.61 4.73 37.29 4.16
2725 2745 8.184304 AGGCAATATTGTGGTTGTAAAACTAA 57.816 30.769 16.61 0.00 32.01 2.24
2746 2766 7.112122 ACTAATCATGAAAGCAATACACTCCA 58.888 34.615 0.00 0.00 0.00 3.86
2769 2789 5.008712 CACATGTAATCAGCTGCTCATGATT 59.991 40.000 28.53 21.23 45.59 2.57
3018 3040 7.327761 CACAACAATCAAGCTCATCTTAAAAGG 59.672 37.037 0.00 0.00 32.74 3.11
3019 3041 5.958955 ACAATCAAGCTCATCTTAAAAGGC 58.041 37.500 0.00 0.00 32.74 4.35
3021 3043 2.420022 TCAAGCTCATCTTAAAAGGCGC 59.580 45.455 0.00 0.00 32.74 6.53
3154 3176 4.917998 GGCAGACGTATATCACTACACATG 59.082 45.833 0.00 0.00 0.00 3.21
3174 3196 5.597182 ACATGGCAAATTTGAGCTCTGATAT 59.403 36.000 22.31 0.10 0.00 1.63
3190 3212 7.715249 AGCTCTGATATCCGTTTTAGCAATTTA 59.285 33.333 0.00 0.00 0.00 1.40
3200 3222 9.168451 TCCGTTTTAGCAATTTATATGTTCTCA 57.832 29.630 0.00 0.00 0.00 3.27
3201 3223 9.438291 CCGTTTTAGCAATTTATATGTTCTCAG 57.562 33.333 0.00 0.00 0.00 3.35
3207 3229 6.540189 AGCAATTTATATGTTCTCAGAACGCT 59.460 34.615 12.98 8.72 0.00 5.07
3209 3231 7.348201 CAATTTATATGTTCTCAGAACGCTCC 58.652 38.462 12.98 0.00 0.00 4.70
3210 3232 5.592104 TTATATGTTCTCAGAACGCTCCA 57.408 39.130 12.98 0.00 0.00 3.86
3211 3233 4.679373 ATATGTTCTCAGAACGCTCCAT 57.321 40.909 12.98 3.13 0.00 3.41
3212 3234 5.791336 ATATGTTCTCAGAACGCTCCATA 57.209 39.130 12.98 5.25 0.00 2.74
3213 3235 3.510388 TGTTCTCAGAACGCTCCATAG 57.490 47.619 12.98 0.00 0.00 2.23
3214 3236 2.826128 TGTTCTCAGAACGCTCCATAGT 59.174 45.455 12.98 0.00 0.00 2.12
3215 3237 4.014406 TGTTCTCAGAACGCTCCATAGTA 58.986 43.478 12.98 0.00 0.00 1.82
3216 3238 4.142447 TGTTCTCAGAACGCTCCATAGTAC 60.142 45.833 12.98 0.00 0.00 2.73
3409 3431 6.398918 AGGTTGTGAACTGTATGTATCTGAC 58.601 40.000 0.00 0.00 0.00 3.51
3451 3473 9.661187 CTGTTTGCATGATGATCTTATAAACTC 57.339 33.333 0.00 0.00 0.00 3.01
3815 3839 3.996363 GGAAATTGTTTCTGGGTGAATGC 59.004 43.478 2.84 0.00 39.59 3.56
3887 3911 9.555727 AACACTTCTAAACTTCTAATGCAGTAA 57.444 29.630 0.00 0.00 0.00 2.24
3888 3912 8.989980 ACACTTCTAAACTTCTAATGCAGTAAC 58.010 33.333 0.00 0.00 0.00 2.50
3891 3915 9.209175 CTTCTAAACTTCTAATGCAGTAACACT 57.791 33.333 0.00 0.00 0.00 3.55
3947 3973 1.757682 TCACGGAAGCTTTGTGGTTT 58.242 45.000 24.14 0.00 36.40 3.27
4058 4084 4.447724 GCGTTCTGTAGTTGATGTTTCAGA 59.552 41.667 0.00 0.00 32.27 3.27
4066 4092 8.621532 TGTAGTTGATGTTTCAGAAATAGCTT 57.378 30.769 9.05 0.00 32.27 3.74
4079 4105 1.915078 ATAGCTTGCCTGCCGGTCTT 61.915 55.000 1.90 0.00 0.00 3.01
4098 4124 6.418819 CGGTCTTGGAATAATGCATGATTTTC 59.581 38.462 10.76 7.29 34.42 2.29
4125 4151 8.715191 TTTTTGACTGCATGAAACTACAAATT 57.285 26.923 0.00 0.00 0.00 1.82
4497 4529 9.262358 GTTCTATTGCCCTAACATCTTACTAAG 57.738 37.037 0.00 0.00 0.00 2.18
4604 4636 4.779489 TGATTCTCATGTCTCCCTCTCAAA 59.221 41.667 0.00 0.00 0.00 2.69
4758 4790 2.187946 GCCGCATGTAGTGAGCCT 59.812 61.111 0.00 0.00 0.00 4.58
4934 4966 1.318576 CACCCCGTTTTGAGAAAGCT 58.681 50.000 0.00 0.00 0.00 3.74
4977 5009 2.758979 ACTAGTGGAATCGAACGGATGT 59.241 45.455 0.00 0.00 34.93 3.06
5089 5121 2.426024 CAAGGCACAGATGGAAATGGAG 59.574 50.000 0.00 0.00 0.00 3.86
5262 5294 2.223688 CCCTGAAGTATCTGCTGACTCG 60.224 54.545 0.00 0.00 0.00 4.18
5639 5707 3.921119 ATGTGCAAGTGGTGTATGTTG 57.079 42.857 0.00 0.00 0.00 3.33
5640 5708 1.336440 TGTGCAAGTGGTGTATGTTGC 59.664 47.619 0.00 0.00 44.53 4.17
5642 5710 2.791383 GCAAGTGGTGTATGTTGCAA 57.209 45.000 0.00 0.00 43.86 4.08
5643 5711 3.090952 GCAAGTGGTGTATGTTGCAAA 57.909 42.857 0.00 0.00 43.86 3.68
5674 5742 3.921119 TGGTTCATGCATGTCTGTTTC 57.079 42.857 25.43 10.31 0.00 2.78
5771 5839 3.711704 AGGATGACATGGATCGGTACTTT 59.288 43.478 0.00 0.00 0.00 2.66
5773 5841 2.627945 TGACATGGATCGGTACTTTGC 58.372 47.619 0.00 0.00 0.00 3.68
5774 5842 2.027653 TGACATGGATCGGTACTTTGCA 60.028 45.455 0.00 0.00 0.00 4.08
5832 5900 7.539034 AGGCTGTAACACCTTTTGAATATTT 57.461 32.000 0.00 0.00 29.74 1.40
5833 5901 7.962441 AGGCTGTAACACCTTTTGAATATTTT 58.038 30.769 0.00 0.00 29.74 1.82
6055 6123 1.803519 CTGAGCTTCGGTCGTCTGC 60.804 63.158 0.00 0.00 32.15 4.26
6100 6168 2.174349 GCGTTCTGCAAAGAGGCG 59.826 61.111 0.00 0.00 45.45 5.52
6235 6303 8.752005 TTATATATGGAGCTGTTCTTTTGCTT 57.248 30.769 0.00 0.00 37.16 3.91
6511 6579 7.876068 CCAGCATATGCCAAATATGAGAATTTT 59.124 33.333 23.96 0.00 43.38 1.82
6512 6580 9.917129 CAGCATATGCCAAATATGAGAATTTTA 57.083 29.630 23.96 0.00 43.38 1.52
6544 6614 5.792741 TGTGTGTGATCATCATTACACTCA 58.207 37.500 25.91 17.58 45.55 3.41
6573 6643 2.300437 TGTGTCCACATCGTCCAATGTA 59.700 45.455 0.00 0.00 37.78 2.29
6862 6957 1.304282 TGCTCTGGCAATTCCCCTC 59.696 57.895 0.00 0.00 46.36 4.30
6869 6964 2.634453 CTGGCAATTCCCCTCTTGTTTT 59.366 45.455 0.00 0.00 0.00 2.43
7088 8460 1.273327 GCTTGAAACCCCACAATCAGG 59.727 52.381 0.00 0.00 0.00 3.86
7089 8461 1.273327 CTTGAAACCCCACAATCAGGC 59.727 52.381 0.00 0.00 0.00 4.85
7090 8462 0.187117 TGAAACCCCACAATCAGGCA 59.813 50.000 0.00 0.00 0.00 4.75
7114 8486 4.637977 CCCCTTTCTTCTGTTTCTAGCATC 59.362 45.833 0.00 0.00 0.00 3.91
7217 8589 6.545298 AGATTAGCTCATGAATTTCTTGGGTC 59.455 38.462 12.30 6.35 0.00 4.46
7296 8682 3.827008 TCAGCTATCTGGGTGTCATTC 57.173 47.619 0.00 0.00 40.69 2.67
7336 8722 7.503549 TGGATTCCGGATATGATAATGATCTG 58.496 38.462 4.15 0.00 32.79 2.90
7348 8734 5.294306 TGATAATGATCTGTCAAAAGCGACC 59.706 40.000 0.00 0.00 38.01 4.79
7353 8739 1.412710 TCTGTCAAAAGCGACCTGTCT 59.587 47.619 0.00 0.00 34.88 3.41
7407 8804 9.932207 TTATAAGACGTTTTTAGAGTCCATGAA 57.068 29.630 0.00 0.00 35.65 2.57
7414 8811 9.367444 ACGTTTTTAGAGTCCATGAAAGTATAG 57.633 33.333 0.00 0.00 0.00 1.31
7461 8862 6.150474 ACGGAGGGAGTACAAATTAATGTTTG 59.850 38.462 0.00 0.92 43.11 2.93
7524 8929 3.943381 TCTAGGAGCAGCATGAACATTTG 59.057 43.478 0.00 0.00 39.69 2.32
7543 8948 6.094881 ACATTTGGTGAAAGAAAGAGAAACGA 59.905 34.615 0.00 0.00 0.00 3.85
7598 9011 8.752254 CATAATGCATTTCATTTTCTGCAGTAG 58.248 33.333 18.75 0.60 44.91 2.57
7608 9021 4.316205 TTTCTGCAGTAGACGTCTTTGA 57.684 40.909 25.44 2.19 34.43 2.69
7615 9028 2.028930 AGTAGACGTCTTTGAAGGCAGG 60.029 50.000 25.44 0.00 0.00 4.85
7616 9029 0.603975 AGACGTCTTTGAAGGCAGGC 60.604 55.000 13.58 0.00 0.00 4.85
7709 9122 2.120909 GGAATCATGCGTGTGGGGG 61.121 63.158 5.68 0.00 0.00 5.40
7710 9123 1.077787 GAATCATGCGTGTGGGGGA 60.078 57.895 5.68 0.00 0.00 4.81
7711 9124 1.376609 GAATCATGCGTGTGGGGGAC 61.377 60.000 5.68 0.00 0.00 4.46
7713 9126 1.852157 ATCATGCGTGTGGGGGACTT 61.852 55.000 5.68 0.00 0.00 3.01
7715 9128 3.567579 ATGCGTGTGGGGGACTTGG 62.568 63.158 0.00 0.00 0.00 3.61
7718 9131 2.520968 GTGTGGGGGACTTGGCTT 59.479 61.111 0.00 0.00 0.00 4.35
7719 9132 1.152546 GTGTGGGGGACTTGGCTTT 60.153 57.895 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.785499 CCGACGACTCGAGACGCA 61.785 66.667 31.56 0.00 43.06 5.24
1 2 3.423077 CTCCGACGACTCGAGACGC 62.423 68.421 31.56 23.33 43.06 5.19
2 3 2.696238 CTCCGACGACTCGAGACG 59.304 66.667 30.39 30.39 43.06 4.18
3 4 2.462782 CCCTCCGACGACTCGAGAC 61.463 68.421 21.68 12.76 43.06 3.36
4 5 2.125229 CCCTCCGACGACTCGAGA 60.125 66.667 21.68 0.00 43.06 4.04
5 6 3.878519 GCCCTCCGACGACTCGAG 61.879 72.222 11.84 11.84 43.06 4.04
6 7 3.989838 ATGCCCTCCGACGACTCGA 62.990 63.158 5.20 0.00 43.06 4.04
7 8 3.518998 ATGCCCTCCGACGACTCG 61.519 66.667 0.00 0.00 39.83 4.18
8 9 2.105128 CATGCCCTCCGACGACTC 59.895 66.667 0.00 0.00 0.00 3.36
9 10 2.680352 ACATGCCCTCCGACGACT 60.680 61.111 0.00 0.00 0.00 4.18
10 11 2.509336 CACATGCCCTCCGACGAC 60.509 66.667 0.00 0.00 0.00 4.34
11 12 3.770040 CCACATGCCCTCCGACGA 61.770 66.667 0.00 0.00 0.00 4.20
12 13 3.094062 ATCCACATGCCCTCCGACG 62.094 63.158 0.00 0.00 0.00 5.12
13 14 1.524621 CATCCACATGCCCTCCGAC 60.525 63.158 0.00 0.00 0.00 4.79
14 15 1.688884 TCATCCACATGCCCTCCGA 60.689 57.895 0.00 0.00 0.00 4.55
15 16 1.227764 CTCATCCACATGCCCTCCG 60.228 63.158 0.00 0.00 0.00 4.63
16 17 0.465097 CACTCATCCACATGCCCTCC 60.465 60.000 0.00 0.00 0.00 4.30
17 18 0.254178 ACACTCATCCACATGCCCTC 59.746 55.000 0.00 0.00 0.00 4.30
18 19 0.254178 GACACTCATCCACATGCCCT 59.746 55.000 0.00 0.00 0.00 5.19
19 20 0.254178 AGACACTCATCCACATGCCC 59.746 55.000 0.00 0.00 0.00 5.36
20 21 1.209019 AGAGACACTCATCCACATGCC 59.791 52.381 0.00 0.00 32.06 4.40
21 22 2.093816 TCAGAGACACTCATCCACATGC 60.094 50.000 0.00 0.00 32.06 4.06
22 23 3.519579 GTCAGAGACACTCATCCACATG 58.480 50.000 0.00 0.00 32.06 3.21
23 24 2.165234 CGTCAGAGACACTCATCCACAT 59.835 50.000 0.00 0.00 32.06 3.21
24 25 1.541588 CGTCAGAGACACTCATCCACA 59.458 52.381 0.00 0.00 32.06 4.17
25 26 1.813178 TCGTCAGAGACACTCATCCAC 59.187 52.381 0.00 0.00 32.06 4.02
26 27 2.200373 TCGTCAGAGACACTCATCCA 57.800 50.000 0.00 0.00 32.06 3.41
27 28 3.380004 AGATTCGTCAGAGACACTCATCC 59.620 47.826 0.00 0.00 32.06 3.51
28 29 4.142491 ACAGATTCGTCAGAGACACTCATC 60.142 45.833 0.00 0.00 32.06 2.92
29 30 3.761218 ACAGATTCGTCAGAGACACTCAT 59.239 43.478 0.00 0.00 32.06 2.90
30 31 3.149981 ACAGATTCGTCAGAGACACTCA 58.850 45.455 0.00 0.00 32.06 3.41
31 32 3.726486 CGACAGATTCGTCAGAGACACTC 60.726 52.174 8.59 0.00 43.24 3.51
32 33 2.160615 CGACAGATTCGTCAGAGACACT 59.839 50.000 8.59 0.00 43.24 3.55
33 34 2.510874 CGACAGATTCGTCAGAGACAC 58.489 52.381 8.59 0.00 43.24 3.67
34 35 2.902065 CGACAGATTCGTCAGAGACA 57.098 50.000 8.59 0.00 43.24 3.41
44 45 0.880718 GGCCGAATCCCGACAGATTC 60.881 60.000 10.84 10.84 45.75 2.52
45 46 1.146263 GGCCGAATCCCGACAGATT 59.854 57.895 0.00 0.00 41.76 2.40
46 47 2.822399 GGCCGAATCCCGACAGAT 59.178 61.111 0.00 0.00 41.76 2.90
52 53 4.609018 AGCATCGGCCGAATCCCG 62.609 66.667 34.66 18.62 46.88 5.14
53 54 2.203209 AAGCATCGGCCGAATCCC 60.203 61.111 34.66 19.64 42.56 3.85
54 55 1.776034 GACAAGCATCGGCCGAATCC 61.776 60.000 34.66 22.23 42.56 3.01
55 56 0.811616 AGACAAGCATCGGCCGAATC 60.812 55.000 34.66 25.41 42.56 2.52
56 57 0.392998 AAGACAAGCATCGGCCGAAT 60.393 50.000 34.66 18.69 42.56 3.34
57 58 1.003839 AAGACAAGCATCGGCCGAA 60.004 52.632 34.66 16.30 42.56 4.30
58 59 1.447838 GAAGACAAGCATCGGCCGA 60.448 57.895 33.12 33.12 42.56 5.54
59 60 2.802667 CGAAGACAAGCATCGGCCG 61.803 63.158 22.12 22.12 42.56 6.13
60 61 1.298859 AACGAAGACAAGCATCGGCC 61.299 55.000 0.00 0.00 41.66 6.13
61 62 0.179215 CAACGAAGACAAGCATCGGC 60.179 55.000 0.00 0.00 41.66 5.54
62 63 0.443869 CCAACGAAGACAAGCATCGG 59.556 55.000 0.00 0.00 41.66 4.18
63 64 1.428448 TCCAACGAAGACAAGCATCG 58.572 50.000 0.00 0.00 42.91 3.84
64 65 4.161333 CAAATCCAACGAAGACAAGCATC 58.839 43.478 0.00 0.00 0.00 3.91
65 66 3.612479 GCAAATCCAACGAAGACAAGCAT 60.612 43.478 0.00 0.00 0.00 3.79
66 67 2.287547 GCAAATCCAACGAAGACAAGCA 60.288 45.455 0.00 0.00 0.00 3.91
67 68 2.319472 GCAAATCCAACGAAGACAAGC 58.681 47.619 0.00 0.00 0.00 4.01
68 69 2.032030 ACGCAAATCCAACGAAGACAAG 60.032 45.455 0.00 0.00 0.00 3.16
69 70 1.944024 ACGCAAATCCAACGAAGACAA 59.056 42.857 0.00 0.00 0.00 3.18
70 71 1.262950 CACGCAAATCCAACGAAGACA 59.737 47.619 0.00 0.00 0.00 3.41
71 72 1.399727 CCACGCAAATCCAACGAAGAC 60.400 52.381 0.00 0.00 0.00 3.01
72 73 0.871722 CCACGCAAATCCAACGAAGA 59.128 50.000 0.00 0.00 0.00 2.87
73 74 0.871722 TCCACGCAAATCCAACGAAG 59.128 50.000 0.00 0.00 0.00 3.79
74 75 1.466950 GATCCACGCAAATCCAACGAA 59.533 47.619 0.00 0.00 0.00 3.85
75 76 1.083489 GATCCACGCAAATCCAACGA 58.917 50.000 0.00 0.00 0.00 3.85
76 77 0.801872 TGATCCACGCAAATCCAACG 59.198 50.000 0.00 0.00 0.00 4.10
77 78 2.228822 ACTTGATCCACGCAAATCCAAC 59.771 45.455 0.00 0.00 0.00 3.77
78 79 2.487762 GACTTGATCCACGCAAATCCAA 59.512 45.455 0.00 0.00 0.00 3.53
79 80 2.083774 GACTTGATCCACGCAAATCCA 58.916 47.619 0.00 0.00 0.00 3.41
80 81 2.359900 AGACTTGATCCACGCAAATCC 58.640 47.619 0.00 0.00 0.00 3.01
81 82 3.436704 TGAAGACTTGATCCACGCAAATC 59.563 43.478 0.00 0.00 0.00 2.17
82 83 3.411446 TGAAGACTTGATCCACGCAAAT 58.589 40.909 0.00 0.00 0.00 2.32
83 84 2.844946 TGAAGACTTGATCCACGCAAA 58.155 42.857 0.00 0.00 0.00 3.68
84 85 2.542020 TGAAGACTTGATCCACGCAA 57.458 45.000 0.00 0.00 0.00 4.85
85 86 2.768253 ATGAAGACTTGATCCACGCA 57.232 45.000 0.00 0.00 0.00 5.24
86 87 2.029728 CGAATGAAGACTTGATCCACGC 59.970 50.000 0.00 0.00 0.00 5.34
87 88 3.254060 ACGAATGAAGACTTGATCCACG 58.746 45.455 0.00 0.31 0.00 4.94
88 89 5.049405 ACAAACGAATGAAGACTTGATCCAC 60.049 40.000 0.00 0.00 0.00 4.02
89 90 5.063204 ACAAACGAATGAAGACTTGATCCA 58.937 37.500 0.00 0.00 0.00 3.41
90 91 5.613358 ACAAACGAATGAAGACTTGATCC 57.387 39.130 0.00 0.00 0.00 3.36
91 92 6.892691 AGAACAAACGAATGAAGACTTGATC 58.107 36.000 0.00 0.00 0.00 2.92
92 93 6.867662 AGAACAAACGAATGAAGACTTGAT 57.132 33.333 0.00 0.00 0.00 2.57
93 94 6.093495 ACAAGAACAAACGAATGAAGACTTGA 59.907 34.615 0.00 0.00 36.14 3.02
94 95 6.195244 CACAAGAACAAACGAATGAAGACTTG 59.805 38.462 0.00 0.00 37.56 3.16
95 96 6.128007 ACACAAGAACAAACGAATGAAGACTT 60.128 34.615 0.00 0.00 0.00 3.01
96 97 5.354234 ACACAAGAACAAACGAATGAAGACT 59.646 36.000 0.00 0.00 0.00 3.24
97 98 5.569413 ACACAAGAACAAACGAATGAAGAC 58.431 37.500 0.00 0.00 0.00 3.01
98 99 5.584649 AGACACAAGAACAAACGAATGAAGA 59.415 36.000 0.00 0.00 0.00 2.87
99 100 5.810525 AGACACAAGAACAAACGAATGAAG 58.189 37.500 0.00 0.00 0.00 3.02
100 101 5.811399 AGACACAAGAACAAACGAATGAA 57.189 34.783 0.00 0.00 0.00 2.57
101 102 5.813157 TGTAGACACAAGAACAAACGAATGA 59.187 36.000 0.00 0.00 0.00 2.57
102 103 6.019075 TCTGTAGACACAAGAACAAACGAATG 60.019 38.462 0.00 0.00 33.22 2.67
103 104 6.046593 TCTGTAGACACAAGAACAAACGAAT 58.953 36.000 0.00 0.00 33.22 3.34
104 105 5.412640 TCTGTAGACACAAGAACAAACGAA 58.587 37.500 0.00 0.00 33.22 3.85
105 106 5.001237 TCTGTAGACACAAGAACAAACGA 57.999 39.130 0.00 0.00 33.22 3.85
106 107 5.907197 ATCTGTAGACACAAGAACAAACG 57.093 39.130 0.00 0.00 33.22 3.60
107 108 6.260050 TCCAATCTGTAGACACAAGAACAAAC 59.740 38.462 0.00 0.00 33.22 2.93
108 109 6.353323 TCCAATCTGTAGACACAAGAACAAA 58.647 36.000 0.00 0.00 33.22 2.83
109 110 5.924356 TCCAATCTGTAGACACAAGAACAA 58.076 37.500 0.00 0.00 33.22 2.83
110 111 5.545063 TCCAATCTGTAGACACAAGAACA 57.455 39.130 0.00 0.00 33.22 3.18
111 112 5.582665 GGATCCAATCTGTAGACACAAGAAC 59.417 44.000 6.95 0.00 33.22 3.01
112 113 5.485353 AGGATCCAATCTGTAGACACAAGAA 59.515 40.000 15.82 0.00 33.22 2.52
113 114 5.026121 AGGATCCAATCTGTAGACACAAGA 58.974 41.667 15.82 0.00 33.22 3.02
114 115 5.350504 AGGATCCAATCTGTAGACACAAG 57.649 43.478 15.82 0.00 33.22 3.16
115 116 5.485353 AGAAGGATCCAATCTGTAGACACAA 59.515 40.000 15.82 0.00 33.22 3.33
116 117 5.026121 AGAAGGATCCAATCTGTAGACACA 58.974 41.667 15.82 0.00 0.00 3.72
117 118 5.355596 CAGAAGGATCCAATCTGTAGACAC 58.644 45.833 27.38 0.95 36.64 3.67
118 119 4.406972 CCAGAAGGATCCAATCTGTAGACA 59.593 45.833 30.47 0.00 39.10 3.41
119 120 4.407296 ACCAGAAGGATCCAATCTGTAGAC 59.593 45.833 30.47 5.01 39.10 2.59
120 121 4.624913 ACCAGAAGGATCCAATCTGTAGA 58.375 43.478 30.47 0.00 39.10 2.59
121 122 4.653341 AGACCAGAAGGATCCAATCTGTAG 59.347 45.833 30.47 23.13 39.10 2.74
122 123 4.624913 AGACCAGAAGGATCCAATCTGTA 58.375 43.478 30.47 0.00 39.10 2.74
123 124 3.458831 AGACCAGAAGGATCCAATCTGT 58.541 45.455 30.47 23.01 39.10 3.41
124 125 4.500545 CGTAGACCAGAAGGATCCAATCTG 60.501 50.000 28.19 28.19 40.17 2.90
125 126 3.639094 CGTAGACCAGAAGGATCCAATCT 59.361 47.826 15.82 14.13 38.69 2.40
126 127 3.637229 TCGTAGACCAGAAGGATCCAATC 59.363 47.826 15.82 11.91 38.69 2.67
127 128 3.643237 TCGTAGACCAGAAGGATCCAAT 58.357 45.455 15.82 1.38 38.69 3.16
128 129 3.095912 TCGTAGACCAGAAGGATCCAA 57.904 47.619 15.82 0.00 38.69 3.53
129 130 2.820728 TCGTAGACCAGAAGGATCCA 57.179 50.000 15.82 0.00 38.69 3.41
130 131 3.892588 AGAATCGTAGACCAGAAGGATCC 59.107 47.826 2.48 2.48 42.51 3.36
131 132 4.825085 AGAGAATCGTAGACCAGAAGGATC 59.175 45.833 0.00 0.00 42.51 3.36
132 133 4.798882 AGAGAATCGTAGACCAGAAGGAT 58.201 43.478 0.00 0.00 42.51 3.24
133 134 4.237976 AGAGAATCGTAGACCAGAAGGA 57.762 45.455 0.00 0.00 42.51 3.36
134 135 4.496673 CGAAGAGAATCGTAGACCAGAAGG 60.497 50.000 0.00 0.00 42.51 3.46
135 136 4.593157 CGAAGAGAATCGTAGACCAGAAG 58.407 47.826 0.00 0.00 42.51 2.85
136 137 4.617808 CGAAGAGAATCGTAGACCAGAA 57.382 45.455 0.00 0.00 42.51 3.02
147 148 1.272781 CACCGCTGACGAAGAGAATC 58.727 55.000 0.00 0.00 43.93 2.52
148 149 0.108615 CCACCGCTGACGAAGAGAAT 60.109 55.000 0.00 0.00 43.93 2.40
149 150 1.289066 CCACCGCTGACGAAGAGAA 59.711 57.895 0.00 0.00 43.93 2.87
150 151 1.461091 AACCACCGCTGACGAAGAGA 61.461 55.000 0.00 0.00 43.93 3.10
151 152 1.006102 AACCACCGCTGACGAAGAG 60.006 57.895 0.00 0.00 43.93 2.85
152 153 1.006571 GAACCACCGCTGACGAAGA 60.007 57.895 0.00 0.00 43.93 2.87
153 154 2.027625 GGAACCACCGCTGACGAAG 61.028 63.158 0.00 0.00 43.93 3.79
154 155 1.180456 TAGGAACCACCGCTGACGAA 61.180 55.000 0.00 0.00 43.93 3.85
155 156 0.968901 ATAGGAACCACCGCTGACGA 60.969 55.000 0.00 0.00 43.93 4.20
156 157 0.108329 AATAGGAACCACCGCTGACG 60.108 55.000 0.00 0.00 44.74 4.35
157 158 1.207329 AGAATAGGAACCACCGCTGAC 59.793 52.381 0.00 0.00 44.74 3.51
158 159 1.207089 CAGAATAGGAACCACCGCTGA 59.793 52.381 0.00 0.00 44.74 4.26
159 160 1.066143 ACAGAATAGGAACCACCGCTG 60.066 52.381 0.00 0.00 44.74 5.18
160 161 1.066143 CACAGAATAGGAACCACCGCT 60.066 52.381 0.00 0.00 44.74 5.52
161 162 1.338769 ACACAGAATAGGAACCACCGC 60.339 52.381 0.00 0.00 44.74 5.68
162 163 2.346803 CACACAGAATAGGAACCACCG 58.653 52.381 0.00 0.00 44.74 4.94
163 164 2.084546 GCACACAGAATAGGAACCACC 58.915 52.381 0.00 0.00 39.35 4.61
164 165 2.744202 CAGCACACAGAATAGGAACCAC 59.256 50.000 0.00 0.00 0.00 4.16
165 166 2.290260 CCAGCACACAGAATAGGAACCA 60.290 50.000 0.00 0.00 0.00 3.67
166 167 2.290323 ACCAGCACACAGAATAGGAACC 60.290 50.000 0.00 0.00 0.00 3.62
167 168 3.003480 GACCAGCACACAGAATAGGAAC 58.997 50.000 0.00 0.00 0.00 3.62
168 169 2.027192 GGACCAGCACACAGAATAGGAA 60.027 50.000 0.00 0.00 0.00 3.36
169 170 1.555075 GGACCAGCACACAGAATAGGA 59.445 52.381 0.00 0.00 0.00 2.94
170 171 1.556911 AGGACCAGCACACAGAATAGG 59.443 52.381 0.00 0.00 0.00 2.57
171 172 3.340814 AAGGACCAGCACACAGAATAG 57.659 47.619 0.00 0.00 0.00 1.73
172 173 3.181445 ACAAAGGACCAGCACACAGAATA 60.181 43.478 0.00 0.00 0.00 1.75
173 174 2.233271 CAAAGGACCAGCACACAGAAT 58.767 47.619 0.00 0.00 0.00 2.40
174 175 1.064758 ACAAAGGACCAGCACACAGAA 60.065 47.619 0.00 0.00 0.00 3.02
175 176 0.546122 ACAAAGGACCAGCACACAGA 59.454 50.000 0.00 0.00 0.00 3.41
176 177 0.664761 CACAAAGGACCAGCACACAG 59.335 55.000 0.00 0.00 0.00 3.66
177 178 0.751277 CCACAAAGGACCAGCACACA 60.751 55.000 0.00 0.00 41.22 3.72
178 179 0.751643 ACCACAAAGGACCAGCACAC 60.752 55.000 0.00 0.00 41.22 3.82
179 180 0.465460 GACCACAAAGGACCAGCACA 60.465 55.000 0.00 0.00 41.22 4.57
180 181 0.179018 AGACCACAAAGGACCAGCAC 60.179 55.000 0.00 0.00 41.22 4.40
181 182 0.108585 GAGACCACAAAGGACCAGCA 59.891 55.000 0.00 0.00 41.22 4.41
182 183 0.108585 TGAGACCACAAAGGACCAGC 59.891 55.000 0.00 0.00 41.22 4.85
183 184 1.879796 GCTGAGACCACAAAGGACCAG 60.880 57.143 0.00 0.00 41.22 4.00
184 185 0.108585 GCTGAGACCACAAAGGACCA 59.891 55.000 0.00 0.00 41.22 4.02
185 186 0.108585 TGCTGAGACCACAAAGGACC 59.891 55.000 0.00 0.00 41.22 4.46
186 187 1.230324 GTGCTGAGACCACAAAGGAC 58.770 55.000 0.00 0.00 41.22 3.85
187 188 0.249868 CGTGCTGAGACCACAAAGGA 60.250 55.000 0.00 0.00 41.22 3.36
188 189 0.249868 TCGTGCTGAGACCACAAAGG 60.250 55.000 0.00 0.00 45.67 3.11
189 190 0.861837 GTCGTGCTGAGACCACAAAG 59.138 55.000 0.00 0.00 32.85 2.77
190 191 0.874175 CGTCGTGCTGAGACCACAAA 60.874 55.000 0.00 0.00 35.33 2.83
191 192 1.299850 CGTCGTGCTGAGACCACAA 60.300 57.895 0.00 0.00 35.33 3.33
192 193 2.190841 TCGTCGTGCTGAGACCACA 61.191 57.895 0.00 0.00 35.33 4.17
193 194 1.729838 GTCGTCGTGCTGAGACCAC 60.730 63.158 0.00 0.00 35.33 4.16
194 195 1.452953 AAGTCGTCGTGCTGAGACCA 61.453 55.000 0.00 0.00 35.33 4.02
195 196 0.729816 GAAGTCGTCGTGCTGAGACC 60.730 60.000 0.00 0.00 35.33 3.85
196 197 0.729816 GGAAGTCGTCGTGCTGAGAC 60.730 60.000 0.00 0.00 35.41 3.36
197 198 1.579932 GGAAGTCGTCGTGCTGAGA 59.420 57.895 0.00 0.00 0.00 3.27
198 199 1.444553 GGGAAGTCGTCGTGCTGAG 60.445 63.158 0.00 0.00 0.00 3.35
199 200 2.649034 GGGAAGTCGTCGTGCTGA 59.351 61.111 0.00 0.00 0.00 4.26
200 201 2.805353 CGGGAAGTCGTCGTGCTG 60.805 66.667 0.00 0.00 0.00 4.41
201 202 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
202 203 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
203 204 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
204 205 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
205 206 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
206 207 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
207 208 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
208 209 0.096628 CGTAGACAGTCGGGAAGTCG 59.903 60.000 0.00 0.00 37.36 4.18
209 210 1.446907 TCGTAGACAGTCGGGAAGTC 58.553 55.000 0.00 0.00 0.00 3.01
210 211 3.639099 TCGTAGACAGTCGGGAAGT 57.361 52.632 0.00 0.00 0.00 3.01
222 223 3.995705 CGGGTAAACCATTTTGTCGTAGA 59.004 43.478 0.81 0.00 40.22 2.59
223 224 3.125658 CCGGGTAAACCATTTTGTCGTAG 59.874 47.826 0.00 0.00 40.22 3.51
224 225 3.072944 CCGGGTAAACCATTTTGTCGTA 58.927 45.455 0.00 0.00 40.22 3.43
225 226 1.881324 CCGGGTAAACCATTTTGTCGT 59.119 47.619 0.00 0.00 40.22 4.34
226 227 1.401800 GCCGGGTAAACCATTTTGTCG 60.402 52.381 2.18 0.00 40.22 4.35
227 228 1.890489 AGCCGGGTAAACCATTTTGTC 59.110 47.619 3.10 0.00 40.22 3.18
228 229 1.890489 GAGCCGGGTAAACCATTTTGT 59.110 47.619 5.91 0.00 40.22 2.83
229 230 1.203758 GGAGCCGGGTAAACCATTTTG 59.796 52.381 5.91 0.00 40.22 2.44
230 231 1.552578 GGAGCCGGGTAAACCATTTT 58.447 50.000 5.91 0.00 40.22 1.82
231 232 0.678684 CGGAGCCGGGTAAACCATTT 60.679 55.000 5.91 0.00 40.22 2.32
232 233 1.078001 CGGAGCCGGGTAAACCATT 60.078 57.895 5.91 0.00 40.22 3.16
233 234 2.587889 CGGAGCCGGGTAAACCAT 59.412 61.111 5.91 0.00 40.22 3.55
243 244 0.826672 ACTATCCCTTACCGGAGCCG 60.827 60.000 9.46 1.06 34.69 5.52
244 245 0.967662 GACTATCCCTTACCGGAGCC 59.032 60.000 9.46 0.00 34.69 4.70
245 246 1.614413 CAGACTATCCCTTACCGGAGC 59.386 57.143 9.46 0.00 34.69 4.70
246 247 2.946785 ACAGACTATCCCTTACCGGAG 58.053 52.381 9.46 0.00 34.69 4.63
247 248 4.524802 TTACAGACTATCCCTTACCGGA 57.475 45.455 9.46 0.00 36.02 5.14
248 249 5.803237 ATTTACAGACTATCCCTTACCGG 57.197 43.478 0.00 0.00 0.00 5.28
249 250 8.118976 TCATATTTACAGACTATCCCTTACCG 57.881 38.462 0.00 0.00 0.00 4.02
259 260 9.656323 AGGGAGTACATTCATATTTACAGACTA 57.344 33.333 0.00 0.00 0.00 2.59
260 261 8.554490 AGGGAGTACATTCATATTTACAGACT 57.446 34.615 0.00 0.00 0.00 3.24
261 262 7.873505 GGAGGGAGTACATTCATATTTACAGAC 59.126 40.741 0.00 0.00 0.00 3.51
262 263 7.255836 CGGAGGGAGTACATTCATATTTACAGA 60.256 40.741 0.00 0.00 0.00 3.41
263 264 6.868864 CGGAGGGAGTACATTCATATTTACAG 59.131 42.308 0.00 0.00 0.00 2.74
264 265 6.325545 ACGGAGGGAGTACATTCATATTTACA 59.674 38.462 0.00 0.00 0.00 2.41
265 266 6.756221 ACGGAGGGAGTACATTCATATTTAC 58.244 40.000 0.00 0.00 0.00 2.01
266 267 6.989155 ACGGAGGGAGTACATTCATATTTA 57.011 37.500 0.00 0.00 0.00 1.40
267 268 5.888982 ACGGAGGGAGTACATTCATATTT 57.111 39.130 0.00 0.00 0.00 1.40
268 269 5.888982 AACGGAGGGAGTACATTCATATT 57.111 39.130 0.00 0.00 0.00 1.28
269 270 5.365605 TGAAACGGAGGGAGTACATTCATAT 59.634 40.000 0.00 0.00 0.00 1.78
270 271 4.712829 TGAAACGGAGGGAGTACATTCATA 59.287 41.667 0.00 0.00 0.00 2.15
271 272 3.517901 TGAAACGGAGGGAGTACATTCAT 59.482 43.478 0.00 0.00 0.00 2.57
272 273 2.901192 TGAAACGGAGGGAGTACATTCA 59.099 45.455 0.00 0.00 0.00 2.57
273 274 3.604875 TGAAACGGAGGGAGTACATTC 57.395 47.619 0.00 0.00 0.00 2.67
274 275 4.360951 TTTGAAACGGAGGGAGTACATT 57.639 40.909 0.00 0.00 0.00 2.71
275 276 4.360951 TTTTGAAACGGAGGGAGTACAT 57.639 40.909 0.00 0.00 0.00 2.29
276 277 3.842007 TTTTGAAACGGAGGGAGTACA 57.158 42.857 0.00 0.00 0.00 2.90
277 278 7.767659 ACTTATATTTTGAAACGGAGGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
278 279 7.854337 ACTTATATTTTGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
279 280 6.718294 ACTTATATTTTGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
280 281 7.048512 AGACTTATATTTTGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
281 282 6.954232 AGACTTATATTTTGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
282 283 7.625828 AAGACTTATATTTTGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
283 284 9.908152 AAAAAGACTTATATTTTGAAACGGAGG 57.092 29.630 0.00 0.00 29.76 4.30
301 302 9.396022 TCACTTGTTGAAATCTCTAAAAAGACT 57.604 29.630 0.00 0.00 0.00 3.24
302 303 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
303 304 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
306 307 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
307 308 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
309 310 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
310 311 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
311 312 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
312 313 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
313 314 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
314 315 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
315 316 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
316 317 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
317 318 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
318 319 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
319 320 3.368116 GGCTCCGTATGTAGTCACTTGTT 60.368 47.826 0.00 0.00 0.00 2.83
320 321 2.165845 GGCTCCGTATGTAGTCACTTGT 59.834 50.000 0.00 0.00 0.00 3.16
321 322 2.165641 TGGCTCCGTATGTAGTCACTTG 59.834 50.000 0.00 0.00 0.00 3.16
322 323 2.453521 TGGCTCCGTATGTAGTCACTT 58.546 47.619 0.00 0.00 0.00 3.16
323 324 2.139323 TGGCTCCGTATGTAGTCACT 57.861 50.000 0.00 0.00 0.00 3.41
324 325 2.953466 TTGGCTCCGTATGTAGTCAC 57.047 50.000 0.00 0.00 0.00 3.67
325 326 5.128171 ACTTATTTGGCTCCGTATGTAGTCA 59.872 40.000 0.00 0.00 0.00 3.41
326 327 5.462398 CACTTATTTGGCTCCGTATGTAGTC 59.538 44.000 0.00 0.00 0.00 2.59
327 328 5.128171 TCACTTATTTGGCTCCGTATGTAGT 59.872 40.000 0.00 0.00 0.00 2.73
328 329 5.597806 TCACTTATTTGGCTCCGTATGTAG 58.402 41.667 0.00 0.00 0.00 2.74
329 330 5.601583 TCACTTATTTGGCTCCGTATGTA 57.398 39.130 0.00 0.00 0.00 2.29
330 331 4.481368 TCACTTATTTGGCTCCGTATGT 57.519 40.909 0.00 0.00 0.00 2.29
331 332 5.760253 AGATTCACTTATTTGGCTCCGTATG 59.240 40.000 0.00 0.00 0.00 2.39
332 333 5.930135 AGATTCACTTATTTGGCTCCGTAT 58.070 37.500 0.00 0.00 0.00 3.06
333 334 5.353394 AGATTCACTTATTTGGCTCCGTA 57.647 39.130 0.00 0.00 0.00 4.02
334 335 4.222124 AGATTCACTTATTTGGCTCCGT 57.778 40.909 0.00 0.00 0.00 4.69
335 336 7.155328 AGTATAGATTCACTTATTTGGCTCCG 58.845 38.462 0.00 0.00 0.00 4.63
336 337 8.371699 AGAGTATAGATTCACTTATTTGGCTCC 58.628 37.037 0.00 0.00 0.00 4.70
376 377 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
377 378 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
379 380 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
380 381 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
381 382 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
382 383 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
383 384 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
384 385 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
385 386 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
386 387 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
387 388 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
388 389 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
413 414 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
414 415 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
415 416 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
416 417 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
417 418 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
418 419 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
419 420 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
420 421 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
421 422 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
422 423 7.441903 AAAATACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
423 424 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
424 425 5.767277 AAAATACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
425 426 5.767277 AAAAATACTCCCTCCGTTCCTAA 57.233 39.130 0.00 0.00 0.00 2.69
479 482 5.281727 TCGGAGAAATCTATTCATCACACG 58.718 41.667 0.00 0.00 0.00 4.49
508 513 1.464997 CACTCTTTTCCTGCGCTTACC 59.535 52.381 9.73 0.00 0.00 2.85
514 519 1.795286 GAGTGACACTCTTTTCCTGCG 59.205 52.381 25.33 0.00 41.88 5.18
532 539 1.858091 ACCGCGAGCAAATCATAGAG 58.142 50.000 8.23 0.00 0.00 2.43
534 541 1.261619 GGAACCGCGAGCAAATCATAG 59.738 52.381 8.23 0.00 0.00 2.23
536 543 1.705337 CGGAACCGCGAGCAAATCAT 61.705 55.000 8.23 0.00 0.00 2.45
537 544 2.387445 CGGAACCGCGAGCAAATCA 61.387 57.895 8.23 0.00 0.00 2.57
538 545 2.399611 CGGAACCGCGAGCAAATC 59.600 61.111 8.23 0.00 0.00 2.17
539 546 3.124921 CCGGAACCGCGAGCAAAT 61.125 61.111 8.23 0.00 38.24 2.32
540 547 4.612412 ACCGGAACCGCGAGCAAA 62.612 61.111 9.46 0.00 38.24 3.68
541 548 4.612412 AACCGGAACCGCGAGCAA 62.612 61.111 9.46 0.00 38.24 3.91
558 567 0.534203 GACTTCGCCTTTGGTGTCCA 60.534 55.000 0.00 0.00 34.40 4.02
1203 1214 4.363138 TGCAACAGATACAGATTAGAGCG 58.637 43.478 0.00 0.00 0.00 5.03
1263 1274 0.110373 GCCTACAAAGCAAACGGACG 60.110 55.000 0.00 0.00 0.00 4.79
1285 1298 3.036431 CCTGTTGGGGAACACCTTC 57.964 57.895 0.00 0.00 40.03 3.46
1381 1394 2.762459 CGGATGACCTTCCCCGGA 60.762 66.667 0.73 0.00 38.42 5.14
1571 1584 1.071385 CTCCCTCATGACCATACAGCC 59.929 57.143 0.00 0.00 0.00 4.85
1582 1595 2.372264 CCACCAAATGTCTCCCTCATG 58.628 52.381 0.00 0.00 0.00 3.07
1609 1622 1.372683 GCACTTCACCTGGCTGAGA 59.627 57.895 0.00 0.00 0.00 3.27
1938 1955 1.336440 CAACCAAAATGCGTGAGTGGA 59.664 47.619 9.22 0.00 33.39 4.02
1947 1964 2.743664 GGGATTCTTGCAACCAAAATGC 59.256 45.455 0.00 0.00 44.08 3.56
1971 1988 6.630071 AGGAAATTGACCATACATTTTTCCG 58.370 36.000 0.48 0.00 41.67 4.30
2014 2031 2.690778 GCCACCGAAGCACATGGAC 61.691 63.158 0.00 0.00 33.80 4.02
2158 2175 9.751542 AATCTGTCCACGAAATACTTCTTATAG 57.248 33.333 0.00 0.00 0.00 1.31
2160 2177 9.530633 GTAATCTGTCCACGAAATACTTCTTAT 57.469 33.333 0.00 0.00 0.00 1.73
2161 2178 8.525316 TGTAATCTGTCCACGAAATACTTCTTA 58.475 33.333 0.00 0.00 0.00 2.10
2162 2179 7.383687 TGTAATCTGTCCACGAAATACTTCTT 58.616 34.615 0.00 0.00 0.00 2.52
2163 2180 6.931838 TGTAATCTGTCCACGAAATACTTCT 58.068 36.000 0.00 0.00 0.00 2.85
2164 2181 7.591006 TTGTAATCTGTCCACGAAATACTTC 57.409 36.000 0.00 0.00 0.00 3.01
2165 2182 8.561738 AATTGTAATCTGTCCACGAAATACTT 57.438 30.769 0.00 0.00 0.00 2.24
2213 2231 0.533531 GGGGGCGAATAGGTAAACGG 60.534 60.000 0.00 0.00 0.00 4.44
2218 2236 1.713297 GAAGAGGGGGCGAATAGGTA 58.287 55.000 0.00 0.00 0.00 3.08
2290 2308 7.048629 TGCATGTTTGATAACAAAGGAAAGA 57.951 32.000 0.00 0.00 46.62 2.52
2291 2309 7.894376 ATGCATGTTTGATAACAAAGGAAAG 57.106 32.000 0.00 0.00 46.62 2.62
2400 2418 7.228706 ACCTTGAGTTGTATAACAAGAACCTTG 59.771 37.037 5.08 5.26 39.00 3.61
2453 2471 4.622701 AGAGACAAGTTCTTTGCACAAC 57.377 40.909 0.00 0.00 40.59 3.32
2469 2487 8.613482 GCATAACCCAAGTTAAATAGAAGAGAC 58.387 37.037 0.00 0.00 41.68 3.36
2540 2558 5.128827 TCCATCGAACCTCTAATAGCAGTTT 59.871 40.000 0.00 0.00 0.00 2.66
2686 2706 5.746990 ATATTGCCTACCTGGATAGTGTC 57.253 43.478 0.00 0.00 38.35 3.67
2690 2710 5.221925 ACCACAATATTGCCTACCTGGATAG 60.222 44.000 21.20 0.00 38.35 2.08
2725 2745 5.255687 TGTGGAGTGTATTGCTTTCATGAT 58.744 37.500 0.00 0.00 0.00 2.45
2740 2760 2.353889 GCAGCTGATTACATGTGGAGTG 59.646 50.000 20.43 0.00 0.00 3.51
2746 2766 4.146745 TCATGAGCAGCTGATTACATGT 57.853 40.909 24.53 2.69 37.15 3.21
3018 3040 0.511221 TTCAGAACTAAGCAACGCGC 59.489 50.000 5.73 0.00 42.91 6.86
3019 3041 2.221055 ACTTTCAGAACTAAGCAACGCG 59.779 45.455 3.53 3.53 0.00 6.01
3021 3043 5.006746 ACAGAACTTTCAGAACTAAGCAACG 59.993 40.000 0.00 0.00 0.00 4.10
3154 3176 4.320057 CGGATATCAGAGCTCAAATTTGCC 60.320 45.833 17.77 7.82 0.00 4.52
3174 3196 9.168451 TGAGAACATATAAATTGCTAAAACGGA 57.832 29.630 0.00 0.00 0.00 4.69
3190 3212 4.679373 ATGGAGCGTTCTGAGAACATAT 57.321 40.909 23.50 9.53 0.00 1.78
3193 3215 2.826128 ACTATGGAGCGTTCTGAGAACA 59.174 45.455 23.50 5.58 0.00 3.18
3194 3216 3.512033 ACTATGGAGCGTTCTGAGAAC 57.488 47.619 15.12 15.12 0.00 3.01
3196 3218 3.617284 TGTACTATGGAGCGTTCTGAGA 58.383 45.455 0.00 0.00 0.00 3.27
3197 3219 4.576216 ATGTACTATGGAGCGTTCTGAG 57.424 45.455 0.00 0.00 0.00 3.35
3198 3220 5.374071 TCTATGTACTATGGAGCGTTCTGA 58.626 41.667 0.00 0.00 0.00 3.27
3200 3222 4.216687 GCTCTATGTACTATGGAGCGTTCT 59.783 45.833 19.68 0.00 41.50 3.01
3201 3223 4.477780 GCTCTATGTACTATGGAGCGTTC 58.522 47.826 19.68 0.00 41.50 3.95
3207 3229 8.367911 CAATTACTTGGCTCTATGTACTATGGA 58.632 37.037 0.00 0.00 0.00 3.41
3211 3233 8.857098 CCTACAATTACTTGGCTCTATGTACTA 58.143 37.037 0.00 0.00 36.64 1.82
3212 3234 7.202011 CCCTACAATTACTTGGCTCTATGTACT 60.202 40.741 0.00 0.00 36.64 2.73
3213 3235 6.929606 CCCTACAATTACTTGGCTCTATGTAC 59.070 42.308 0.00 0.00 36.64 2.90
3214 3236 6.842280 TCCCTACAATTACTTGGCTCTATGTA 59.158 38.462 0.00 0.00 36.64 2.29
3215 3237 5.665812 TCCCTACAATTACTTGGCTCTATGT 59.334 40.000 0.00 0.00 36.64 2.29
3216 3238 6.174720 TCCCTACAATTACTTGGCTCTATG 57.825 41.667 0.00 0.00 36.64 2.23
3409 3431 4.142600 GCAAACAGACAGGTATGCTTTAGG 60.143 45.833 0.00 0.00 0.00 2.69
3451 3473 5.182001 ACAAATTAAGCTAGCACTTGGACAG 59.818 40.000 18.83 1.40 0.00 3.51
3815 3839 1.943116 CTGACAGCGACCCTCTCTGG 61.943 65.000 0.00 0.00 33.75 3.86
3860 3884 8.089115 ACTGCATTAGAAGTTTAGAAGTGTTC 57.911 34.615 0.00 0.00 24.49 3.18
3887 3911 9.512588 AATGAGTTCATTAGAAGATTTCAGTGT 57.487 29.630 5.59 0.00 44.09 3.55
3888 3912 9.770503 CAATGAGTTCATTAGAAGATTTCAGTG 57.229 33.333 7.01 0.00 44.10 3.66
4058 4084 1.000896 ACCGGCAGGCAAGCTATTT 60.001 52.632 0.00 0.00 42.76 1.40
4066 4092 1.558167 TATTCCAAGACCGGCAGGCA 61.558 55.000 0.00 0.00 42.76 4.75
4210 4236 9.603298 CGCTACTCGTTAATGTCAATAGTATAA 57.397 33.333 0.00 0.00 0.00 0.98
4211 4237 7.747799 GCGCTACTCGTTAATGTCAATAGTATA 59.252 37.037 0.00 0.00 41.07 1.47
4497 4529 4.792702 GCAAAATGTTTTTGGCAGAAACAC 59.207 37.500 30.94 18.05 46.24 3.32
4604 4636 2.693591 TCAGTCAAAACGTCCTGAGAGT 59.306 45.455 0.00 0.00 30.80 3.24
4758 4790 6.381133 TCTGCTTCACTAATGGTATCTTCAGA 59.619 38.462 0.00 0.00 0.00 3.27
4934 4966 6.296026 AGTGTTGTGGCTTCATTAACTTCTA 58.704 36.000 0.00 0.00 0.00 2.10
4977 5009 3.680156 GCAGATTTTGCGGGTCCA 58.320 55.556 0.00 0.00 44.09 4.02
5089 5121 3.259123 AGGCCAACAAAATGAACTGGATC 59.741 43.478 5.01 0.00 0.00 3.36
5142 5174 0.313987 GTTCAGGGGGTTTTTCAGCG 59.686 55.000 0.00 0.00 0.00 5.18
5262 5294 1.109323 AAGCCACCACTGCTTTGACC 61.109 55.000 0.00 0.00 46.47 4.02
5639 5707 5.517770 GCATGAACCATAATCTTCAGTTTGC 59.482 40.000 0.00 0.00 30.04 3.68
5640 5708 6.623486 TGCATGAACCATAATCTTCAGTTTG 58.377 36.000 0.00 0.00 30.04 2.93
5641 5709 6.839124 TGCATGAACCATAATCTTCAGTTT 57.161 33.333 0.00 0.00 30.04 2.66
5642 5710 6.379133 ACATGCATGAACCATAATCTTCAGTT 59.621 34.615 32.75 0.57 30.04 3.16
5643 5711 5.889853 ACATGCATGAACCATAATCTTCAGT 59.110 36.000 32.75 0.95 30.04 3.41
5644 5712 6.262496 AGACATGCATGAACCATAATCTTCAG 59.738 38.462 32.75 0.18 30.04 3.02
5645 5713 6.038936 CAGACATGCATGAACCATAATCTTCA 59.961 38.462 32.75 0.00 0.00 3.02
5646 5714 6.039047 ACAGACATGCATGAACCATAATCTTC 59.961 38.462 32.75 14.59 0.00 2.87
5647 5715 5.889853 ACAGACATGCATGAACCATAATCTT 59.110 36.000 32.75 5.67 0.00 2.40
5648 5716 5.443283 ACAGACATGCATGAACCATAATCT 58.557 37.500 32.75 18.45 0.00 2.40
5649 5717 5.762825 ACAGACATGCATGAACCATAATC 57.237 39.130 32.75 16.51 0.00 1.75
5650 5718 6.406177 GGAAACAGACATGCATGAACCATAAT 60.406 38.462 32.75 7.85 0.00 1.28
5651 5719 5.105797 GGAAACAGACATGCATGAACCATAA 60.106 40.000 32.75 0.00 0.00 1.90
5652 5720 4.398988 GGAAACAGACATGCATGAACCATA 59.601 41.667 32.75 0.00 0.00 2.74
5653 5721 3.194116 GGAAACAGACATGCATGAACCAT 59.806 43.478 32.75 10.28 0.00 3.55
5654 5722 2.557924 GGAAACAGACATGCATGAACCA 59.442 45.455 32.75 0.00 0.00 3.67
5655 5723 2.557924 TGGAAACAGACATGCATGAACC 59.442 45.455 32.75 19.43 35.01 3.62
5656 5724 3.921119 TGGAAACAGACATGCATGAAC 57.079 42.857 32.75 23.27 35.01 3.18
5657 5725 5.125900 CCTATTGGAAACAGACATGCATGAA 59.874 40.000 32.75 13.39 44.54 2.57
5658 5726 4.641541 CCTATTGGAAACAGACATGCATGA 59.358 41.667 32.75 6.78 44.54 3.07
5674 5742 9.765795 CCTTAAGTTGATAGTACTTCCTATTGG 57.234 37.037 0.00 0.00 37.12 3.16
5687 5755 7.491372 TGCAACGTTAGATCCTTAAGTTGATAG 59.509 37.037 17.24 0.00 39.60 2.08
5688 5756 7.324935 TGCAACGTTAGATCCTTAAGTTGATA 58.675 34.615 17.24 7.12 39.60 2.15
5689 5757 6.170506 TGCAACGTTAGATCCTTAAGTTGAT 58.829 36.000 17.24 0.00 39.60 2.57
5832 5900 5.178096 TGAATTAGGTTCAGCTGGATGAA 57.822 39.130 15.13 1.05 41.79 2.57
5833 5901 4.842531 TGAATTAGGTTCAGCTGGATGA 57.157 40.909 15.13 0.00 41.79 2.92
6055 6123 2.260844 ACATACATCATCCGCCCAAG 57.739 50.000 0.00 0.00 0.00 3.61
6100 6168 3.000727 GTGCCTGTGTTCTGTATACACC 58.999 50.000 0.08 0.00 44.05 4.16
6221 6289 3.698029 TCTCACAAGCAAAAGAACAGC 57.302 42.857 0.00 0.00 0.00 4.40
6235 6303 3.791320 AGGTTTCCCTGTCTATCTCACA 58.209 45.455 0.00 0.00 40.58 3.58
6519 6587 5.798132 AGTGTAATGATGATCACACACAGT 58.202 37.500 28.92 19.05 43.02 3.55
6520 6588 5.870978 TGAGTGTAATGATGATCACACACAG 59.129 40.000 28.92 0.00 43.02 3.66
6522 6590 6.238293 CCATGAGTGTAATGATGATCACACAC 60.238 42.308 24.00 24.00 42.92 3.82
6722 6804 2.440409 CCCACACAAGCTTAAGCATCT 58.560 47.619 28.39 10.32 45.16 2.90
6899 6994 9.461312 ACCTAAATTGTCAAGCATAAGATTACA 57.539 29.630 0.00 0.00 0.00 2.41
6900 6995 9.722056 CACCTAAATTGTCAAGCATAAGATTAC 57.278 33.333 0.00 0.00 0.00 1.89
6901 6996 8.405531 GCACCTAAATTGTCAAGCATAAGATTA 58.594 33.333 0.00 0.00 0.00 1.75
6902 6997 7.260603 GCACCTAAATTGTCAAGCATAAGATT 58.739 34.615 0.00 0.00 0.00 2.40
7088 8460 2.587522 AGAAACAGAAGAAAGGGGTGC 58.412 47.619 0.00 0.00 0.00 5.01
7089 8461 3.753797 GCTAGAAACAGAAGAAAGGGGTG 59.246 47.826 0.00 0.00 0.00 4.61
7090 8462 3.394606 TGCTAGAAACAGAAGAAAGGGGT 59.605 43.478 0.00 0.00 0.00 4.95
7114 8486 3.397482 ACAAGAAACAGTCTGCTGCTAG 58.603 45.455 0.00 0.00 46.30 3.42
7217 8589 7.175641 ACAGGTTTATTTTGAGATCAGGTCAAG 59.824 37.037 0.00 0.00 35.39 3.02
7296 8682 0.463295 ATCCATCAGCCGTTCTGCAG 60.463 55.000 7.63 7.63 42.56 4.41
7336 8722 1.527311 GACAGACAGGTCGCTTTTGAC 59.473 52.381 0.00 0.00 38.17 3.18
7348 8734 7.066887 AGTCTACATCTATTCACAGACAGACAG 59.933 40.741 0.00 0.00 35.58 3.51
7353 8739 8.809468 AGTTAGTCTACATCTATTCACAGACA 57.191 34.615 0.00 0.00 35.87 3.41
7461 8862 2.479837 TGTTGTTGACGTGATGAGGAC 58.520 47.619 0.00 0.00 0.00 3.85
7524 8929 5.615764 GCAGATCGTTTCTCTTTCTTTCACC 60.616 44.000 0.00 0.00 29.93 4.02
7543 8948 4.529897 TGCTCCTAAATGTTCATGCAGAT 58.470 39.130 0.00 0.00 0.00 2.90
7598 9011 1.869690 GCCTGCCTTCAAAGACGTC 59.130 57.895 7.70 7.70 0.00 4.34
7608 9021 2.358737 CGTTTCTCCGCCTGCCTT 60.359 61.111 0.00 0.00 0.00 4.35
7615 9028 3.119096 GGCAGACCGTTTCTCCGC 61.119 66.667 0.00 0.00 28.96 5.54
7616 9029 0.882927 TTTGGCAGACCGTTTCTCCG 60.883 55.000 0.00 0.00 39.70 4.63
7643 9056 4.454161 ACGCAATATAAAAGAGCACACACA 59.546 37.500 0.00 0.00 0.00 3.72
7644 9057 4.788100 CACGCAATATAAAAGAGCACACAC 59.212 41.667 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.