Multiple sequence alignment - TraesCS1D01G330800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G330800 chr1D 100.000 6360 0 0 1 6360 421030337 421036696 0.000000e+00 11745
1 TraesCS1D01G330800 chr1D 74.801 627 107 23 4057 4655 485716872 485717475 1.070000e-57 235
2 TraesCS1D01G330800 chr1D 83.262 233 28 9 1072 1300 485573787 485573562 3.010000e-48 204
3 TraesCS1D01G330800 chr1D 82.629 213 30 6 1131 1340 485714332 485714540 1.410000e-41 182
4 TraesCS1D01G330800 chr1B 94.052 4018 180 26 1558 5551 570270957 570274939 0.000000e+00 6041
5 TraesCS1D01G330800 chr1B 84.968 938 83 45 2 911 570217994 570218901 0.000000e+00 898
6 TraesCS1D01G330800 chr1B 84.894 940 81 35 2 911 570178399 570179307 0.000000e+00 893
7 TraesCS1D01G330800 chr1B 91.304 575 23 10 989 1554 570270340 570270896 0.000000e+00 760
8 TraesCS1D01G330800 chr1B 84.349 607 48 18 5786 6360 570275144 570275735 9.320000e-153 551
9 TraesCS1D01G330800 chr1B 74.727 550 88 27 4057 4571 676202765 676203298 1.400000e-46 198
10 TraesCS1D01G330800 chr1B 82.403 233 30 9 1072 1300 676161689 676161464 6.510000e-45 193
11 TraesCS1D01G330800 chr1A 93.883 2158 101 9 3418 5565 517411315 517413451 0.000000e+00 3225
12 TraesCS1D01G330800 chr1A 93.284 1876 68 21 1558 3383 517409449 517411316 0.000000e+00 2713
13 TraesCS1D01G330800 chr1A 86.063 861 50 33 722 1555 517408572 517409389 0.000000e+00 861
14 TraesCS1D01G330800 chr1A 91.667 348 23 6 1 345 517407758 517408102 1.600000e-130 477
15 TraesCS1D01G330800 chr1A 88.571 210 20 4 6143 6351 517414516 517414722 1.060000e-62 252
16 TraesCS1D01G330800 chr1A 83.448 290 21 13 5786 6064 517413636 517413909 1.770000e-60 244
17 TraesCS1D01G330800 chr1A 83.190 232 31 6 1072 1299 583132592 583132365 8.360000e-49 206
18 TraesCS1D01G330800 chr1A 73.760 625 108 30 4057 4650 583303998 583304597 1.810000e-45 195
19 TraesCS1D01G330800 chr1A 82.479 234 27 7 1129 1355 583299382 583299156 6.510000e-45 193
20 TraesCS1D01G330800 chr4B 90.500 200 11 5 1509 1707 338331416 338331608 2.280000e-64 257
21 TraesCS1D01G330800 chr7B 83.929 280 32 11 1356 1627 610529015 610528741 8.180000e-64 255
22 TraesCS1D01G330800 chr5B 76.238 505 98 15 2270 2754 585006481 585006983 1.370000e-61 248
23 TraesCS1D01G330800 chr5B 83.260 227 35 1 1073 1299 585004352 585004575 8.360000e-49 206
24 TraesCS1D01G330800 chr5A 74.372 597 122 22 2270 2839 596566561 596567153 6.420000e-55 226
25 TraesCS1D01G330800 chr5A 84.141 227 33 1 1073 1299 596564468 596564691 3.860000e-52 217
26 TraesCS1D01G330800 chr3B 86.341 205 21 6 1509 1706 438112611 438112815 3.860000e-52 217
27 TraesCS1D01G330800 chr5D 74.901 506 91 21 2270 2754 477379360 477379850 1.400000e-46 198
28 TraesCS1D01G330800 chr2B 80.919 283 21 11 1044 1325 756030764 756030514 6.510000e-45 193
29 TraesCS1D01G330800 chr2B 79.464 112 17 4 322 428 548675264 548675374 2.460000e-09 75
30 TraesCS1D01G330800 chr3D 89.855 138 4 5 1606 1738 562667562 562667694 1.100000e-37 169
31 TraesCS1D01G330800 chr2D 76.761 142 28 4 292 428 470068644 470068785 2.460000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G330800 chr1D 421030337 421036696 6359 False 11745.000000 11745 100.000000 1 6360 1 chr1D.!!$F1 6359
1 TraesCS1D01G330800 chr1D 485714332 485717475 3143 False 208.500000 235 78.715000 1131 4655 2 chr1D.!!$F2 3524
2 TraesCS1D01G330800 chr1B 570270340 570275735 5395 False 2450.666667 6041 89.901667 989 6360 3 chr1B.!!$F4 5371
3 TraesCS1D01G330800 chr1B 570217994 570218901 907 False 898.000000 898 84.968000 2 911 1 chr1B.!!$F2 909
4 TraesCS1D01G330800 chr1B 570178399 570179307 908 False 893.000000 893 84.894000 2 911 1 chr1B.!!$F1 909
5 TraesCS1D01G330800 chr1A 517407758 517414722 6964 False 1295.333333 3225 89.486000 1 6351 6 chr1A.!!$F2 6350
6 TraesCS1D01G330800 chr5B 585004352 585006983 2631 False 227.000000 248 79.749000 1073 2754 2 chr5B.!!$F1 1681
7 TraesCS1D01G330800 chr5A 596564468 596567153 2685 False 221.500000 226 79.256500 1073 2839 2 chr5A.!!$F1 1766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 1419 0.398318 GAAGCTGGGAGTGTTGTCCT 59.602 55.000 0.0 0.0 36.75 3.85 F
988 1482 0.465278 GCCCAATCTCCTCTGCTTCC 60.465 60.000 0.0 0.0 0.00 3.46 F
1458 2014 0.478072 TTTCAGTCCCATGTGCCACT 59.522 50.000 0.0 0.0 0.00 4.00 F
1725 2422 0.614812 ATGTCCCCCTTTTGCAATGC 59.385 50.000 0.0 0.0 0.00 3.56 F
3010 5242 0.681887 TCGTTGAGTATCTGGCCCGA 60.682 55.000 0.0 0.0 34.92 5.14 F
3368 5607 1.067635 GCGATGACACCTTGCCATTTT 60.068 47.619 0.0 0.0 0.00 1.82 F
4045 6285 0.035630 ACCAGGAGATCAGTTGCAGC 60.036 55.000 0.0 0.0 0.00 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2789 1.757118 AGGGTGATGAGGTACATGACG 59.243 52.381 0.0 0.0 42.48 4.35 R
2127 4120 2.512896 AGAGGGGATAGAACCTACGACA 59.487 50.000 0.0 0.0 37.18 4.35 R
3129 5361 3.866910 GCTAAAAATGATGTGCCATGTGG 59.133 43.478 0.0 0.0 38.53 4.17 R
3134 5366 4.280425 TGTCAAGCTAAAAATGATGTGCCA 59.720 37.500 0.0 0.0 0.00 4.92 R
3850 6090 0.250234 TGGCAAAGGTCTGGAGATCG 59.750 55.000 0.0 0.0 0.00 3.69 R
4975 7248 0.319813 GCAAGAACCACCACATTGGC 60.320 55.000 0.0 0.0 42.67 4.52 R
5584 7861 0.037975 CAAGGCAACCAAGCACCATC 60.038 55.000 0.0 0.0 35.83 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.475632 AGTTGGATGTGGAGGACCCA 60.476 55.000 0.00 0.00 44.25 4.51
54 55 7.968405 ACACATGTGTTTTCTCTTGTTTTAGTC 59.032 33.333 25.76 0.00 41.83 2.59
298 307 8.961634 TGAATCGACAAATCCACCAATTTAATA 58.038 29.630 0.00 0.00 0.00 0.98
410 865 7.735917 TGGTCAAATCGTTGATCTAAGGATAT 58.264 34.615 11.08 0.00 45.38 1.63
412 867 7.360438 GGTCAAATCGTTGATCTAAGGATATGC 60.360 40.741 11.08 0.00 45.38 3.14
413 868 7.171508 GTCAAATCGTTGATCTAAGGATATGCA 59.828 37.037 11.08 0.00 45.38 3.96
418 873 5.564550 GTTGATCTAAGGATATGCATGGGT 58.435 41.667 10.16 0.00 31.46 4.51
421 876 5.549228 TGATCTAAGGATATGCATGGGTCTT 59.451 40.000 10.16 10.02 31.46 3.01
428 883 6.435164 AGGATATGCATGGGTCTTTTAAACT 58.565 36.000 10.16 0.00 0.00 2.66
430 885 6.321181 GGATATGCATGGGTCTTTTAAACTGA 59.679 38.462 10.16 0.00 0.00 3.41
432 887 5.195001 TGCATGGGTCTTTTAAACTGAAC 57.805 39.130 0.00 0.00 0.00 3.18
458 931 9.658799 CAGAAGGTAACCCTATCATACATATTG 57.341 37.037 0.00 0.00 41.56 1.90
463 936 8.545472 GGTAACCCTATCATACATATTGCCTTA 58.455 37.037 0.00 0.00 0.00 2.69
502 975 7.279090 TGCATGGAAAATCTTCATGCATTTAAG 59.721 33.333 21.38 10.94 43.39 1.85
548 1023 2.779755 ATATGTGTGCGTTCAAGGGA 57.220 45.000 0.00 0.00 0.00 4.20
553 1028 2.190161 GTGTGCGTTCAAGGGAAAAAC 58.810 47.619 0.00 0.00 34.13 2.43
673 1149 8.633075 ATGAAAAACTTGTACTTGTGAACATG 57.367 30.769 0.00 0.00 0.00 3.21
675 1151 5.574891 AAACTTGTACTTGTGAACATGCA 57.425 34.783 0.00 0.00 0.00 3.96
679 1155 7.270757 ACTTGTACTTGTGAACATGCAAATA 57.729 32.000 0.00 0.00 0.00 1.40
735 1211 8.229461 TTCATTGATGACAGATGGAACACATGA 61.229 37.037 0.00 0.00 37.69 3.07
765 1243 3.502123 AGAAAGAACGGTTCCATGGAA 57.498 42.857 23.63 23.63 0.00 3.53
840 1334 9.645059 AAAACAAGAAGGAAAAGAAAGAGAAAG 57.355 29.630 0.00 0.00 0.00 2.62
845 1339 8.675705 AGAAGGAAAAGAAAGAGAAAGAGAAG 57.324 34.615 0.00 0.00 0.00 2.85
849 1343 9.639563 AGGAAAAGAAAGAGAAAGAGAAGAAAT 57.360 29.630 0.00 0.00 0.00 2.17
851 1345 9.676195 GAAAAGAAAGAGAAAGAGAAGAAATGG 57.324 33.333 0.00 0.00 0.00 3.16
854 1348 8.620116 AGAAAGAGAAAGAGAAGAAATGGAAG 57.380 34.615 0.00 0.00 0.00 3.46
855 1349 7.665145 AGAAAGAGAAAGAGAAGAAATGGAAGG 59.335 37.037 0.00 0.00 0.00 3.46
856 1350 5.814481 AGAGAAAGAGAAGAAATGGAAGGG 58.186 41.667 0.00 0.00 0.00 3.95
860 1354 7.069344 AGAAAGAGAAGAAATGGAAGGGAAAA 58.931 34.615 0.00 0.00 0.00 2.29
910 1404 2.994671 GCTTTCTTGGGCCGGAAGC 61.995 63.158 5.05 8.46 42.60 3.86
918 1412 4.785453 GGCCGGAAGCTGGGAGTG 62.785 72.222 5.05 0.00 43.05 3.51
925 1419 0.398318 GAAGCTGGGAGTGTTGTCCT 59.602 55.000 0.00 0.00 36.75 3.85
929 1423 1.476833 GCTGGGAGTGTTGTCCTTTCA 60.477 52.381 0.00 0.00 36.75 2.69
930 1424 2.815589 GCTGGGAGTGTTGTCCTTTCAT 60.816 50.000 0.00 0.00 36.75 2.57
931 1425 3.490348 CTGGGAGTGTTGTCCTTTCATT 58.510 45.455 0.00 0.00 36.75 2.57
932 1426 3.486383 TGGGAGTGTTGTCCTTTCATTC 58.514 45.455 0.00 0.00 36.75 2.67
933 1427 2.820197 GGGAGTGTTGTCCTTTCATTCC 59.180 50.000 0.00 0.00 37.29 3.01
934 1428 3.498661 GGGAGTGTTGTCCTTTCATTCCT 60.499 47.826 0.00 0.00 37.84 3.36
935 1429 4.263331 GGGAGTGTTGTCCTTTCATTCCTA 60.263 45.833 0.00 0.00 37.84 2.94
936 1430 5.313712 GGAGTGTTGTCCTTTCATTCCTAA 58.686 41.667 0.00 0.00 35.86 2.69
937 1431 5.946377 GGAGTGTTGTCCTTTCATTCCTAAT 59.054 40.000 0.00 0.00 35.86 1.73
938 1432 6.094186 GGAGTGTTGTCCTTTCATTCCTAATC 59.906 42.308 0.00 0.00 35.86 1.75
939 1433 5.643777 AGTGTTGTCCTTTCATTCCTAATCG 59.356 40.000 0.00 0.00 0.00 3.34
940 1434 4.394920 TGTTGTCCTTTCATTCCTAATCGC 59.605 41.667 0.00 0.00 0.00 4.58
941 1435 3.194861 TGTCCTTTCATTCCTAATCGCG 58.805 45.455 0.00 0.00 0.00 5.87
942 1436 2.032808 GTCCTTTCATTCCTAATCGCGC 60.033 50.000 0.00 0.00 0.00 6.86
988 1482 0.465278 GCCCAATCTCCTCTGCTTCC 60.465 60.000 0.00 0.00 0.00 3.46
1342 1848 1.124780 GCCTAGGGTTTCTCCTCTCC 58.875 60.000 11.72 0.00 38.30 3.71
1388 1914 0.746204 TGCCAAGTTCGTGCTGTTGA 60.746 50.000 0.00 0.00 0.00 3.18
1458 2014 0.478072 TTTCAGTCCCATGTGCCACT 59.522 50.000 0.00 0.00 0.00 4.00
1459 2015 1.357137 TTCAGTCCCATGTGCCACTA 58.643 50.000 0.00 0.00 0.00 2.74
1460 2016 1.357137 TCAGTCCCATGTGCCACTAA 58.643 50.000 0.00 0.00 0.00 2.24
1725 2422 0.614812 ATGTCCCCCTTTTGCAATGC 59.385 50.000 0.00 0.00 0.00 3.56
1760 2553 5.528690 TGTCATATTCTTGCTAGGATTGTGC 59.471 40.000 0.00 0.00 0.00 4.57
1860 2669 0.683179 ACGACATCTCCATCCGACCA 60.683 55.000 0.00 0.00 0.00 4.02
1935 2744 2.859165 TCTCCCACAAACTGATGGAC 57.141 50.000 0.00 0.00 38.34 4.02
1971 2789 3.655810 CTGCCTCGTCCCAGCACTC 62.656 68.421 0.00 0.00 32.06 3.51
2127 4120 4.298626 TGCCTGGTATAATTCTCAGAGGT 58.701 43.478 0.00 0.00 0.00 3.85
2157 4150 1.497716 TCTATCCCCTCTGTCGCCTTA 59.502 52.381 0.00 0.00 0.00 2.69
2176 4169 2.222007 AATTGTTGCTCAAAGCGCAA 57.778 40.000 11.47 9.88 46.26 4.85
2581 4792 4.521146 CCTTTGTCCACTATGAAGCTCAT 58.479 43.478 0.00 0.00 40.72 2.90
2718 4929 5.123820 AGTTGTTCCCATTTCATATCACGTG 59.876 40.000 9.94 9.94 0.00 4.49
2788 5016 5.578776 ACTAACACTTTGTTTTACTGCTGC 58.421 37.500 0.00 0.00 41.45 5.25
2903 5135 7.672983 TCTGAAGTTTCTCATTGATAACACC 57.327 36.000 11.89 5.94 0.00 4.16
2907 5139 6.824305 AGTTTCTCATTGATAACACCAAGG 57.176 37.500 11.89 0.00 0.00 3.61
3010 5242 0.681887 TCGTTGAGTATCTGGCCCGA 60.682 55.000 0.00 0.00 34.92 5.14
3013 5245 1.412710 GTTGAGTATCTGGCCCGATGA 59.587 52.381 19.08 3.72 34.92 2.92
3129 5361 8.142348 CGTAGTTTTGTTCATTTACGGAATTC 57.858 34.615 0.00 0.00 32.59 2.17
3134 5366 6.582677 TTGTTCATTTACGGAATTCCACAT 57.417 33.333 24.09 11.23 35.14 3.21
3135 5367 5.948588 TGTTCATTTACGGAATTCCACATG 58.051 37.500 24.09 17.48 35.14 3.21
3257 5489 3.804036 CGTATTGGTGGATAGGAAGCAA 58.196 45.455 0.00 0.00 38.09 3.91
3280 5512 6.705863 ATTCTGGGCTTCTGAAATATGTTC 57.294 37.500 0.00 0.00 36.99 3.18
3368 5607 1.067635 GCGATGACACCTTGCCATTTT 60.068 47.619 0.00 0.00 0.00 1.82
3401 5640 9.899226 GATGCTTAAGATAGTCTTTGTGTTTTT 57.101 29.630 6.67 0.00 37.89 1.94
3485 5724 3.492383 GCGTCTGACATGACTTCCATATG 59.508 47.826 8.73 0.00 35.00 1.78
3623 5863 9.202273 CTTGTGGCAGCAATTAACTATTAAAAA 57.798 29.630 0.00 0.00 0.00 1.94
3690 5930 9.309516 TCTGTGGAAATAGATACATTTCGTTAC 57.690 33.333 3.29 3.70 43.08 2.50
3739 5979 7.512992 AGATAATGACATGGTTTCTTAGGGAG 58.487 38.462 0.00 0.00 0.00 4.30
3740 5980 5.520748 AATGACATGGTTTCTTAGGGAGT 57.479 39.130 0.00 0.00 0.00 3.85
3793 6033 5.705609 TTTTTCCCTATGAGACACTTTGC 57.294 39.130 0.00 0.00 0.00 3.68
3794 6034 3.350219 TTCCCTATGAGACACTTTGCC 57.650 47.619 0.00 0.00 0.00 4.52
3795 6035 2.265367 TCCCTATGAGACACTTTGCCA 58.735 47.619 0.00 0.00 0.00 4.92
3796 6036 2.642311 TCCCTATGAGACACTTTGCCAA 59.358 45.455 0.00 0.00 0.00 4.52
3797 6037 3.266772 TCCCTATGAGACACTTTGCCAAT 59.733 43.478 0.00 0.00 0.00 3.16
3798 6038 3.629398 CCCTATGAGACACTTTGCCAATC 59.371 47.826 0.00 0.00 0.00 2.67
3799 6039 3.310774 CCTATGAGACACTTTGCCAATCG 59.689 47.826 0.00 0.00 0.00 3.34
3800 6040 2.542020 TGAGACACTTTGCCAATCGA 57.458 45.000 0.00 0.00 0.00 3.59
3801 6041 3.057969 TGAGACACTTTGCCAATCGAT 57.942 42.857 0.00 0.00 0.00 3.59
3802 6042 3.002791 TGAGACACTTTGCCAATCGATC 58.997 45.455 0.00 0.00 0.00 3.69
3803 6043 2.352960 GAGACACTTTGCCAATCGATCC 59.647 50.000 0.00 0.00 0.00 3.36
3804 6044 2.026822 AGACACTTTGCCAATCGATCCT 60.027 45.455 0.00 0.00 0.00 3.24
3805 6045 2.086869 ACACTTTGCCAATCGATCCTG 58.913 47.619 0.00 0.00 0.00 3.86
3806 6046 2.086869 CACTTTGCCAATCGATCCTGT 58.913 47.619 0.00 0.00 0.00 4.00
3807 6047 2.489329 CACTTTGCCAATCGATCCTGTT 59.511 45.455 0.00 0.00 0.00 3.16
3808 6048 2.749621 ACTTTGCCAATCGATCCTGTTC 59.250 45.455 0.00 0.00 0.00 3.18
3809 6049 2.787473 TTGCCAATCGATCCTGTTCT 57.213 45.000 0.00 0.00 0.00 3.01
3834 6074 9.302345 CTTAGTGTGTACTCGTCAATTATTCAT 57.698 33.333 0.00 0.00 38.36 2.57
3836 6076 6.472486 AGTGTGTACTCGTCAATTATTCATCG 59.528 38.462 0.00 0.00 28.79 3.84
3850 6090 8.607459 CAATTATTCATCGAATGCTCTATACCC 58.393 37.037 0.00 0.00 33.95 3.69
3866 6106 0.905357 ACCCGATCTCCAGACCTTTG 59.095 55.000 0.00 0.00 0.00 2.77
4045 6285 0.035630 ACCAGGAGATCAGTTGCAGC 60.036 55.000 0.00 0.00 0.00 5.25
4213 6468 5.184479 CAGAGATGGTCATTTGGATTGTTGT 59.816 40.000 0.00 0.00 0.00 3.32
4214 6469 5.776716 AGAGATGGTCATTTGGATTGTTGTT 59.223 36.000 0.00 0.00 0.00 2.83
4215 6470 5.786311 AGATGGTCATTTGGATTGTTGTTG 58.214 37.500 0.00 0.00 0.00 3.33
4311 6573 0.605589 TTTGGCTATTGGGTTTGGCG 59.394 50.000 0.00 0.00 0.00 5.69
4448 6711 3.490348 ACTTCAGGTGGTTTCCTTCATG 58.510 45.455 0.00 0.00 35.37 3.07
4524 6792 2.990479 CTCCTTTCCTGACCGGGG 59.010 66.667 6.32 0.00 0.00 5.73
4582 6850 1.063174 GCTTGATGATGACGTTCCAGC 59.937 52.381 0.00 0.00 0.00 4.85
4672 6940 2.287915 CCAAGTCCAACTTCACTTGTCG 59.712 50.000 10.15 0.00 45.49 4.35
4682 6950 2.595124 TCACTTGTCGCTTTCTGACA 57.405 45.000 0.00 0.00 44.17 3.58
4691 6959 3.994392 GTCGCTTTCTGACATCTTAACCA 59.006 43.478 0.00 0.00 36.37 3.67
4841 7112 8.206189 AGGTTATCGTCCGAAAATAGGAAAATA 58.794 33.333 0.00 0.00 39.84 1.40
4918 7191 2.820059 TGCGAGCCTATTTCATCGAT 57.180 45.000 0.00 0.00 37.35 3.59
4975 7248 0.250467 ATTGGGATTCAGGGATCGCG 60.250 55.000 0.00 0.00 40.67 5.87
4995 7268 0.039256 CCAATGTGGTGGTTCTTGCG 60.039 55.000 0.00 0.00 33.63 4.85
5018 7291 0.805711 TGTGTGCATGCCTATCGTCG 60.806 55.000 16.68 0.00 0.00 5.12
5085 7358 1.373570 GTCTTCCCAAGATTCGGCTG 58.626 55.000 0.00 0.00 40.18 4.85
5182 7455 0.101219 GCGCCAAACTCCATGATTCC 59.899 55.000 0.00 0.00 0.00 3.01
5273 7546 0.322008 CCCTGAGCACTCTGTTTCCC 60.322 60.000 0.00 0.00 0.00 3.97
5281 7554 2.547218 GCACTCTGTTTCCCGTCAGTTA 60.547 50.000 0.00 0.00 33.89 2.24
5317 7590 6.041069 AGGATCTGGTGATACTAACAGTTAGC 59.959 42.308 18.77 5.09 41.86 3.09
5318 7591 5.244785 TCTGGTGATACTAACAGTTAGCG 57.755 43.478 18.77 0.00 36.71 4.26
5346 7622 1.394697 CGTTGCGGACATCAACAAAC 58.605 50.000 6.66 0.00 42.78 2.93
5362 7638 3.603532 ACAAACGCAGATGAGATGATGT 58.396 40.909 0.00 0.00 0.00 3.06
5365 7641 3.747854 ACGCAGATGAGATGATGTCAT 57.252 42.857 4.60 4.60 39.70 3.06
5368 7644 3.607209 CGCAGATGAGATGATGTCATACG 59.393 47.826 4.95 6.42 36.57 3.06
5373 7649 6.971756 CAGATGAGATGATGTCATACGGATAC 59.028 42.308 4.95 0.00 36.57 2.24
5482 7758 1.883084 CCAGGATGTAAGGCGACGC 60.883 63.158 12.43 12.43 0.00 5.19
5492 7768 0.605319 AAGGCGACGCTGAATTTGGA 60.605 50.000 20.77 0.00 0.00 3.53
5505 7782 8.367911 ACGCTGAATTTGGATAGATATCTGTAA 58.632 33.333 15.79 0.73 33.28 2.41
5540 7817 0.109272 TGCACGACGTTCTCAGGATC 60.109 55.000 0.00 0.00 0.00 3.36
5551 7828 4.113354 GTTCTCAGGATCGTTGTATGGTC 58.887 47.826 0.00 0.00 0.00 4.02
5555 7832 1.139058 AGGATCGTTGTATGGTCAGCC 59.861 52.381 0.00 0.00 0.00 4.85
5556 7833 1.583054 GATCGTTGTATGGTCAGCCC 58.417 55.000 0.00 0.00 0.00 5.19
5567 7844 2.204034 TCAGCCCCTGACAGGACA 59.796 61.111 23.77 0.00 37.67 4.02
5568 7845 1.915266 TCAGCCCCTGACAGGACAG 60.915 63.158 23.77 11.93 37.67 3.51
5575 7852 1.595882 CTGACAGGACAGGCTGAGG 59.404 63.158 23.66 9.53 34.64 3.86
5576 7853 0.902048 CTGACAGGACAGGCTGAGGA 60.902 60.000 23.66 0.00 34.64 3.71
5577 7854 0.902048 TGACAGGACAGGCTGAGGAG 60.902 60.000 23.66 10.60 0.00 3.69
5578 7855 0.613292 GACAGGACAGGCTGAGGAGA 60.613 60.000 23.66 0.00 0.00 3.71
5579 7856 0.178921 ACAGGACAGGCTGAGGAGAA 60.179 55.000 23.66 0.00 0.00 2.87
5580 7857 0.979665 CAGGACAGGCTGAGGAGAAA 59.020 55.000 23.66 0.00 0.00 2.52
5581 7858 0.980423 AGGACAGGCTGAGGAGAAAC 59.020 55.000 23.66 1.77 0.00 2.78
5582 7859 0.390472 GGACAGGCTGAGGAGAAACG 60.390 60.000 23.66 0.00 0.00 3.60
5583 7860 0.390472 GACAGGCTGAGGAGAAACGG 60.390 60.000 23.66 0.00 0.00 4.44
5584 7861 1.078848 CAGGCTGAGGAGAAACGGG 60.079 63.158 9.42 0.00 0.00 5.28
5585 7862 1.229209 AGGCTGAGGAGAAACGGGA 60.229 57.895 0.00 0.00 0.00 5.14
5586 7863 0.618968 AGGCTGAGGAGAAACGGGAT 60.619 55.000 0.00 0.00 0.00 3.85
5587 7864 0.462759 GGCTGAGGAGAAACGGGATG 60.463 60.000 0.00 0.00 0.00 3.51
5588 7865 0.462759 GCTGAGGAGAAACGGGATGG 60.463 60.000 0.00 0.00 0.00 3.51
5589 7866 0.905357 CTGAGGAGAAACGGGATGGT 59.095 55.000 0.00 0.00 0.00 3.55
5590 7867 0.613260 TGAGGAGAAACGGGATGGTG 59.387 55.000 0.00 0.00 0.00 4.17
5591 7868 0.744771 GAGGAGAAACGGGATGGTGC 60.745 60.000 0.00 0.00 0.00 5.01
5592 7869 1.201429 AGGAGAAACGGGATGGTGCT 61.201 55.000 0.00 0.00 0.00 4.40
5593 7870 0.322546 GGAGAAACGGGATGGTGCTT 60.323 55.000 0.00 0.00 0.00 3.91
5594 7871 0.804989 GAGAAACGGGATGGTGCTTG 59.195 55.000 0.00 0.00 0.00 4.01
5595 7872 0.609131 AGAAACGGGATGGTGCTTGG 60.609 55.000 0.00 0.00 0.00 3.61
5596 7873 0.893727 GAAACGGGATGGTGCTTGGT 60.894 55.000 0.00 0.00 0.00 3.67
5597 7874 0.469144 AAACGGGATGGTGCTTGGTT 60.469 50.000 0.00 0.00 0.00 3.67
5598 7875 1.178534 AACGGGATGGTGCTTGGTTG 61.179 55.000 0.00 0.00 0.00 3.77
5599 7876 2.973082 GGGATGGTGCTTGGTTGC 59.027 61.111 0.00 0.00 0.00 4.17
5600 7877 2.649129 GGGATGGTGCTTGGTTGCC 61.649 63.158 0.00 0.00 0.00 4.52
5601 7878 1.607467 GGATGGTGCTTGGTTGCCT 60.607 57.895 0.00 0.00 0.00 4.75
5602 7879 1.187567 GGATGGTGCTTGGTTGCCTT 61.188 55.000 0.00 0.00 0.00 4.35
5603 7880 0.037975 GATGGTGCTTGGTTGCCTTG 60.038 55.000 0.00 0.00 0.00 3.61
5604 7881 1.474332 ATGGTGCTTGGTTGCCTTGG 61.474 55.000 0.00 0.00 0.00 3.61
5605 7882 1.832167 GGTGCTTGGTTGCCTTGGA 60.832 57.895 0.00 0.00 0.00 3.53
5606 7883 1.363807 GTGCTTGGTTGCCTTGGAC 59.636 57.895 0.00 0.00 0.00 4.02
5607 7884 1.076412 TGCTTGGTTGCCTTGGACA 60.076 52.632 0.00 0.00 0.00 4.02
5608 7885 0.469705 TGCTTGGTTGCCTTGGACAT 60.470 50.000 0.00 0.00 0.00 3.06
5609 7886 0.681175 GCTTGGTTGCCTTGGACATT 59.319 50.000 0.00 0.00 0.00 2.71
5610 7887 1.337167 GCTTGGTTGCCTTGGACATTC 60.337 52.381 0.00 0.00 0.00 2.67
5611 7888 2.242043 CTTGGTTGCCTTGGACATTCT 58.758 47.619 0.00 0.00 0.00 2.40
5612 7889 2.380064 TGGTTGCCTTGGACATTCTT 57.620 45.000 0.00 0.00 0.00 2.52
5613 7890 2.676748 TGGTTGCCTTGGACATTCTTT 58.323 42.857 0.00 0.00 0.00 2.52
5614 7891 3.037549 TGGTTGCCTTGGACATTCTTTT 58.962 40.909 0.00 0.00 0.00 2.27
5615 7892 3.454082 TGGTTGCCTTGGACATTCTTTTT 59.546 39.130 0.00 0.00 0.00 1.94
5616 7893 4.058124 GGTTGCCTTGGACATTCTTTTTC 58.942 43.478 0.00 0.00 0.00 2.29
5617 7894 3.641437 TGCCTTGGACATTCTTTTTCG 57.359 42.857 0.00 0.00 0.00 3.46
5618 7895 2.295909 TGCCTTGGACATTCTTTTTCGG 59.704 45.455 0.00 0.00 0.00 4.30
5619 7896 2.352715 GCCTTGGACATTCTTTTTCGGG 60.353 50.000 0.00 0.00 0.00 5.14
5620 7897 3.153919 CCTTGGACATTCTTTTTCGGGA 58.846 45.455 0.00 0.00 0.00 5.14
5621 7898 3.572255 CCTTGGACATTCTTTTTCGGGAA 59.428 43.478 0.00 0.00 0.00 3.97
5622 7899 4.220602 CCTTGGACATTCTTTTTCGGGAAT 59.779 41.667 0.00 0.00 33.09 3.01
5627 7904 2.723124 TTCTTTTTCGGGAATGCTGC 57.277 45.000 0.00 0.00 0.00 5.25
5628 7905 1.614996 TCTTTTTCGGGAATGCTGCA 58.385 45.000 4.13 4.13 0.00 4.41
5629 7906 1.959985 TCTTTTTCGGGAATGCTGCAA 59.040 42.857 6.36 0.00 0.00 4.08
5630 7907 2.562298 TCTTTTTCGGGAATGCTGCAAT 59.438 40.909 6.36 0.00 0.00 3.56
5631 7908 2.367030 TTTTCGGGAATGCTGCAATG 57.633 45.000 6.36 0.00 0.00 2.82
5632 7909 1.255882 TTTCGGGAATGCTGCAATGT 58.744 45.000 6.36 0.00 0.00 2.71
5633 7910 1.255882 TTCGGGAATGCTGCAATGTT 58.744 45.000 6.36 0.00 0.00 2.71
5634 7911 1.255882 TCGGGAATGCTGCAATGTTT 58.744 45.000 6.36 0.00 0.00 2.83
5635 7912 1.617850 TCGGGAATGCTGCAATGTTTT 59.382 42.857 6.36 0.00 0.00 2.43
5636 7913 2.036992 TCGGGAATGCTGCAATGTTTTT 59.963 40.909 6.36 0.00 0.00 1.94
5656 7933 5.860941 TTTTGACCAAAGTAATGCTTGGA 57.139 34.783 7.80 0.00 37.52 3.53
5657 7934 6.418057 TTTTGACCAAAGTAATGCTTGGAT 57.582 33.333 7.80 0.00 37.52 3.41
5658 7935 6.418057 TTTGACCAAAGTAATGCTTGGATT 57.582 33.333 7.80 0.00 37.52 3.01
5659 7936 6.418057 TTGACCAAAGTAATGCTTGGATTT 57.582 33.333 7.80 0.00 37.52 2.17
5706 7983 3.138884 TGCTTTGGCACTGTTATCAGA 57.861 42.857 7.81 0.00 44.28 3.27
5710 7987 4.082571 GCTTTGGCACTGTTATCAGACATT 60.083 41.667 7.81 0.00 43.94 2.71
5711 7988 5.627499 TTTGGCACTGTTATCAGACATTC 57.373 39.130 7.81 0.00 43.76 2.67
5712 7989 3.609853 TGGCACTGTTATCAGACATTCC 58.390 45.455 7.81 2.41 43.76 3.01
5713 7990 3.264193 TGGCACTGTTATCAGACATTCCT 59.736 43.478 7.81 0.00 43.76 3.36
5714 7991 3.873952 GGCACTGTTATCAGACATTCCTC 59.126 47.826 7.81 0.00 43.76 3.71
5724 8041 2.094894 CAGACATTCCTCGTGCATCAAC 59.905 50.000 0.00 0.00 0.00 3.18
5742 8059 3.069443 TCAACTTTCCAGGGCAAACATTC 59.931 43.478 0.00 0.00 0.00 2.67
5744 8061 1.613437 CTTTCCAGGGCAAACATTCGT 59.387 47.619 0.00 0.00 0.00 3.85
5745 8062 0.958091 TTCCAGGGCAAACATTCGTG 59.042 50.000 0.00 0.00 0.00 4.35
5754 8071 2.741612 CAAACATTCGTGCCAACATGT 58.258 42.857 0.00 0.00 34.22 3.21
5779 8096 3.025322 TGTCACAAATTCAACAGGGGT 57.975 42.857 0.00 0.00 0.00 4.95
5780 8097 3.370104 TGTCACAAATTCAACAGGGGTT 58.630 40.909 0.00 0.00 37.87 4.11
5781 8098 3.772025 TGTCACAAATTCAACAGGGGTTT 59.228 39.130 0.00 0.00 34.21 3.27
5784 8101 4.467795 TCACAAATTCAACAGGGGTTTGAA 59.532 37.500 0.31 0.31 34.21 2.69
5818 8168 2.046507 CTTCCAGGCTCGCTGCTT 60.047 61.111 0.00 0.00 42.39 3.91
5820 8170 2.518973 CTTCCAGGCTCGCTGCTTCT 62.519 60.000 0.00 0.00 42.39 2.85
5835 8185 1.464219 GCTTCTTCTCTGCAGCTGTTC 59.536 52.381 16.64 0.00 0.00 3.18
5839 8189 1.925847 CTTCTCTGCAGCTGTTCGATC 59.074 52.381 16.64 0.00 0.00 3.69
5850 8200 2.789092 GCTGTTCGATCAAATTCTGGCG 60.789 50.000 0.00 0.00 0.00 5.69
5875 8225 1.945394 CTGCTGCCTGTTGATATGGAC 59.055 52.381 0.00 0.00 0.00 4.02
5878 8228 1.935873 CTGCCTGTTGATATGGACGTG 59.064 52.381 0.00 0.00 0.00 4.49
5879 8229 1.277842 TGCCTGTTGATATGGACGTGT 59.722 47.619 0.00 0.00 0.00 4.49
5880 8230 2.498078 TGCCTGTTGATATGGACGTGTA 59.502 45.455 0.00 0.00 0.00 2.90
5881 8231 3.055747 TGCCTGTTGATATGGACGTGTAA 60.056 43.478 0.00 0.00 0.00 2.41
5882 8232 3.308866 GCCTGTTGATATGGACGTGTAAC 59.691 47.826 0.00 0.00 0.00 2.50
5883 8233 4.500127 CCTGTTGATATGGACGTGTAACA 58.500 43.478 0.00 0.00 35.74 2.41
5917 8267 4.335315 GGACAAAATCTCGGTTGATATGCA 59.665 41.667 0.00 0.00 0.00 3.96
5933 8283 7.586714 TGATATGCAGCTATTAATGTCTTCG 57.413 36.000 0.00 0.00 0.00 3.79
5984 8337 4.080299 AGGGGAGGACATGTCTAACATTTC 60.080 45.833 24.50 6.12 36.53 2.17
5985 8338 4.080299 GGGGAGGACATGTCTAACATTTCT 60.080 45.833 24.50 10.87 36.53 2.52
6022 8391 6.983307 CCGCCAAAATTTTGATTACATCCATA 59.017 34.615 28.44 0.00 40.55 2.74
6023 8392 7.656948 CCGCCAAAATTTTGATTACATCCATAT 59.343 33.333 28.44 0.00 40.55 1.78
6024 8393 9.689976 CGCCAAAATTTTGATTACATCCATATA 57.310 29.630 28.44 0.00 40.55 0.86
6064 8444 5.294552 CAGTAGCTACCTTTCAACCATAAGC 59.705 44.000 20.31 0.00 0.00 3.09
6069 8449 5.183140 GCTACCTTTCAACCATAAGCTTTGA 59.817 40.000 3.20 0.00 0.00 2.69
6083 8463 2.235898 AGCTTTGAGTCCTCATCTCACC 59.764 50.000 0.00 0.00 40.90 4.02
6086 8466 2.612285 TGAGTCCTCATCTCACCAGT 57.388 50.000 0.00 0.00 37.07 4.00
6103 8483 2.030540 CCAGTTGCATCCAGAAACACAG 60.031 50.000 0.00 0.00 38.32 3.66
6104 8484 1.610522 AGTTGCATCCAGAAACACAGC 59.389 47.619 0.00 0.00 38.32 4.40
6107 8489 1.242076 GCATCCAGAAACACAGCAGT 58.758 50.000 0.00 0.00 0.00 4.40
6113 8495 1.876156 CAGAAACACAGCAGTTCTCCC 59.124 52.381 0.00 0.00 0.00 4.30
6130 8512 1.805254 CCCCCACTAGTACACGACG 59.195 63.158 0.00 0.00 0.00 5.12
6171 9080 6.183360 CGAAAAGCACAAATTCAGACCAAAAA 60.183 34.615 0.00 0.00 0.00 1.94
6172 9081 6.421377 AAAGCACAAATTCAGACCAAAAAC 57.579 33.333 0.00 0.00 0.00 2.43
6177 9086 5.004345 CACAAATTCAGACCAAAAACGTGAC 59.996 40.000 0.00 0.00 0.00 3.67
6201 9110 3.084039 TCCCAAGCTTCACAATGACATC 58.916 45.455 0.00 0.00 0.00 3.06
6217 9126 7.605691 ACAATGACATCTTAGACTCTTTTCCTG 59.394 37.037 0.00 0.00 0.00 3.86
6228 9137 5.365314 AGACTCTTTTCCTGTTCTTCAGAGT 59.635 40.000 0.00 0.00 46.27 3.24
6261 9171 1.975407 CCTTCACAGCAGCCCTTGG 60.975 63.158 0.00 0.00 0.00 3.61
6275 9185 0.912486 CCTTGGTGGAGAAGTAGGGG 59.088 60.000 0.00 0.00 38.35 4.79
6341 9251 5.901413 ATTATGCATTCAGAAGGAGAGGA 57.099 39.130 3.54 0.00 0.00 3.71
6342 9252 3.557228 ATGCATTCAGAAGGAGAGGAC 57.443 47.619 0.00 0.00 0.00 3.85
6347 9257 3.827817 TTCAGAAGGAGAGGACCACTA 57.172 47.619 0.00 0.00 0.00 2.74
6356 9266 5.281314 AGGAGAGGACCACTATTACACAAT 58.719 41.667 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 253 2.160721 TGTGTGGGCCTTTTAAACCA 57.839 45.000 4.53 0.00 0.00 3.67
382 837 5.411361 CCTTAGATCAACGATTTGACCAACA 59.589 40.000 0.00 0.00 44.66 3.33
383 838 5.642063 TCCTTAGATCAACGATTTGACCAAC 59.358 40.000 0.00 0.00 44.66 3.77
410 865 4.646945 TGTTCAGTTTAAAAGACCCATGCA 59.353 37.500 0.00 0.00 0.00 3.96
412 867 6.633500 TCTGTTCAGTTTAAAAGACCCATG 57.367 37.500 0.00 0.00 0.00 3.66
413 868 6.265422 CCTTCTGTTCAGTTTAAAAGACCCAT 59.735 38.462 0.00 0.00 0.00 4.00
418 873 7.283807 GGGTTACCTTCTGTTCAGTTTAAAAGA 59.716 37.037 0.00 0.00 0.00 2.52
421 876 6.947644 GGGTTACCTTCTGTTCAGTTTAAA 57.052 37.500 0.00 0.00 0.00 1.52
471 944 8.129496 TGCATGAAGATTTTCCATGCATATAT 57.871 30.769 20.85 0.00 43.99 0.86
477 950 7.493320 TCTTAAATGCATGAAGATTTTCCATGC 59.507 33.333 16.59 16.77 42.13 4.06
479 952 9.595823 CTTCTTAAATGCATGAAGATTTTCCAT 57.404 29.630 19.68 0.00 38.42 3.41
700 1176 9.031360 CCATCTGTCATCAATGAATGATTTTTC 57.969 33.333 5.21 0.00 46.85 2.29
701 1177 8.755028 TCCATCTGTCATCAATGAATGATTTTT 58.245 29.630 5.21 0.00 46.85 1.94
702 1178 8.301252 TCCATCTGTCATCAATGAATGATTTT 57.699 30.769 5.21 0.00 46.85 1.82
703 1179 7.891498 TCCATCTGTCATCAATGAATGATTT 57.109 32.000 5.21 0.00 46.85 2.17
704 1180 7.340999 TGTTCCATCTGTCATCAATGAATGATT 59.659 33.333 5.21 0.00 46.85 2.57
706 1182 6.094464 GTGTTCCATCTGTCATCAATGAATGA 59.906 38.462 5.21 2.95 43.67 2.57
711 1187 5.355910 TCATGTGTTCCATCTGTCATCAATG 59.644 40.000 0.00 0.00 0.00 2.82
715 1191 5.885230 TTTCATGTGTTCCATCTGTCATC 57.115 39.130 0.00 0.00 0.00 2.92
746 1224 4.783764 AATTCCATGGAACCGTTCTTTC 57.216 40.909 29.32 0.00 36.91 2.62
781 1259 6.566197 AAATCACTCACTCTGCCTAAAAAG 57.434 37.500 0.00 0.00 0.00 2.27
783 1261 5.179368 CGAAAATCACTCACTCTGCCTAAAA 59.821 40.000 0.00 0.00 0.00 1.52
817 1311 8.049721 TCTCTTTCTCTTTCTTTTCCTTCTTGT 58.950 33.333 0.00 0.00 0.00 3.16
818 1312 8.443953 TCTCTTTCTCTTTCTTTTCCTTCTTG 57.556 34.615 0.00 0.00 0.00 3.02
819 1313 9.119418 CTTCTCTTTCTCTTTCTTTTCCTTCTT 57.881 33.333 0.00 0.00 0.00 2.52
820 1314 8.490311 TCTTCTCTTTCTCTTTCTTTTCCTTCT 58.510 33.333 0.00 0.00 0.00 2.85
821 1315 8.669946 TCTTCTCTTTCTCTTTCTTTTCCTTC 57.330 34.615 0.00 0.00 0.00 3.46
822 1316 9.467796 TTTCTTCTCTTTCTCTTTCTTTTCCTT 57.532 29.630 0.00 0.00 0.00 3.36
823 1317 9.639563 ATTTCTTCTCTTTCTCTTTCTTTTCCT 57.360 29.630 0.00 0.00 0.00 3.36
834 1328 5.810095 TCCCTTCCATTTCTTCTCTTTCTC 58.190 41.667 0.00 0.00 0.00 2.87
836 1330 6.901081 TTTCCCTTCCATTTCTTCTCTTTC 57.099 37.500 0.00 0.00 0.00 2.62
864 1358 2.152830 CTTCTTCTTCTGCTGCTGCTT 58.847 47.619 17.00 0.00 40.48 3.91
865 1359 1.347050 TCTTCTTCTTCTGCTGCTGCT 59.653 47.619 17.00 0.00 40.48 4.24
866 1360 1.464219 GTCTTCTTCTTCTGCTGCTGC 59.536 52.381 8.89 8.89 40.20 5.25
867 1361 2.075338 GGTCTTCTTCTTCTGCTGCTG 58.925 52.381 0.00 0.00 0.00 4.41
910 1404 2.638480 TGAAAGGACAACACTCCCAG 57.362 50.000 0.00 0.00 0.00 4.45
916 1410 5.673818 GCGATTAGGAATGAAAGGACAACAC 60.674 44.000 0.00 0.00 0.00 3.32
918 1412 4.494199 CGCGATTAGGAATGAAAGGACAAC 60.494 45.833 0.00 0.00 0.00 3.32
925 1419 1.858458 CTCGCGCGATTAGGAATGAAA 59.142 47.619 34.86 5.80 0.00 2.69
929 1423 0.384309 TGTCTCGCGCGATTAGGAAT 59.616 50.000 34.86 0.00 0.00 3.01
930 1424 0.171679 TTGTCTCGCGCGATTAGGAA 59.828 50.000 34.86 18.03 0.00 3.36
931 1425 0.524816 GTTGTCTCGCGCGATTAGGA 60.525 55.000 34.86 23.82 0.00 2.94
932 1426 1.798368 CGTTGTCTCGCGCGATTAGG 61.798 60.000 34.86 21.72 0.00 2.69
933 1427 1.548985 CGTTGTCTCGCGCGATTAG 59.451 57.895 34.86 22.12 0.00 1.73
934 1428 1.870458 CCGTTGTCTCGCGCGATTA 60.870 57.895 34.86 21.78 0.00 1.75
935 1429 3.179265 CCGTTGTCTCGCGCGATT 61.179 61.111 34.86 0.00 0.00 3.34
939 1433 3.479269 CTTCCCGTTGTCTCGCGC 61.479 66.667 0.00 0.00 0.00 6.86
940 1434 2.087009 GTCTTCCCGTTGTCTCGCG 61.087 63.158 0.00 0.00 0.00 5.87
941 1435 1.009389 CAGTCTTCCCGTTGTCTCGC 61.009 60.000 0.00 0.00 0.00 5.03
942 1436 1.009389 GCAGTCTTCCCGTTGTCTCG 61.009 60.000 0.00 0.00 0.00 4.04
988 1482 2.750237 GGCAGTGGGGTTTAGGCG 60.750 66.667 0.00 0.00 0.00 5.52
1354 1860 2.486966 GCAACCATTCAGAGCGGC 59.513 61.111 0.00 0.00 0.00 6.53
1388 1914 1.511318 TAAAGCACGCGCAACCACAT 61.511 50.000 5.73 0.00 42.27 3.21
1458 2014 8.445588 TCATATCACCTAGACATCTAGTGGTTA 58.554 37.037 13.60 6.36 43.34 2.85
1459 2015 7.298374 TCATATCACCTAGACATCTAGTGGTT 58.702 38.462 13.60 4.74 43.34 3.67
1460 2016 6.853490 TCATATCACCTAGACATCTAGTGGT 58.147 40.000 13.60 10.65 43.34 4.16
1730 2427 9.638176 AATCCTAGCAAGAATATGACAAGAAAT 57.362 29.630 0.00 0.00 0.00 2.17
1751 2544 5.882557 ACGAAGATGAATTAAGCACAATCCT 59.117 36.000 0.00 0.00 0.00 3.24
1760 2553 9.611284 TTGAAATGAACACGAAGATGAATTAAG 57.389 29.630 0.00 0.00 0.00 1.85
1860 2669 2.430921 GCGTCTGCAGCGTACACT 60.431 61.111 24.37 0.00 42.15 3.55
1935 2744 2.744494 GCAGATAAGGAGGAGCAACAGG 60.744 54.545 0.00 0.00 0.00 4.00
1971 2789 1.757118 AGGGTGATGAGGTACATGACG 59.243 52.381 0.00 0.00 42.48 4.35
2127 4120 2.512896 AGAGGGGATAGAACCTACGACA 59.487 50.000 0.00 0.00 37.18 4.35
2157 4150 3.963676 TGCGCTTTGAGCAACAATT 57.036 42.105 9.73 0.00 42.58 2.32
2176 4169 5.211201 ACCAGGCAGCCTTAAAATGAATAT 58.789 37.500 12.86 0.00 0.00 1.28
2620 4831 8.971073 ACCATAGAGATAATTCCAACAAAAAGG 58.029 33.333 0.00 0.00 0.00 3.11
2788 5016 5.220662 CCACAATTGAAGTAGCTACCAATCG 60.221 44.000 21.38 16.03 0.00 3.34
2907 5139 3.939066 ACCACTCAAGGTATACAAGTGC 58.061 45.455 15.79 0.00 40.98 4.40
3010 5242 4.041691 TCTCATCATGTCCAGATGCATCAT 59.958 41.667 27.81 10.55 41.98 2.45
3013 5245 4.642466 ATCTCATCATGTCCAGATGCAT 57.358 40.909 0.00 0.00 41.98 3.96
3129 5361 3.866910 GCTAAAAATGATGTGCCATGTGG 59.133 43.478 0.00 0.00 38.53 4.17
3134 5366 4.280425 TGTCAAGCTAAAAATGATGTGCCA 59.720 37.500 0.00 0.00 0.00 4.92
3135 5367 4.622740 GTGTCAAGCTAAAAATGATGTGCC 59.377 41.667 0.00 0.00 0.00 5.01
3155 5387 9.520515 AACATTAGAAAATGGAACTAGATGTGT 57.479 29.630 0.00 0.00 45.72 3.72
3257 5489 6.430007 AGAACATATTTCAGAAGCCCAGAAT 58.570 36.000 0.00 0.00 0.00 2.40
3280 5512 6.238484 CCGGAATAGGTAAAATGAGCAAAGAG 60.238 42.308 0.00 0.00 0.00 2.85
3368 5607 9.317936 CAAAGACTATCTTAAGCATCATGTGTA 57.682 33.333 0.00 0.00 35.27 2.90
3401 5640 9.625747 TCAGCATGGTATGATTAAGACATTAAA 57.374 29.630 0.00 0.00 33.56 1.52
3409 5648 7.683437 ATGTGATCAGCATGGTATGATTAAG 57.317 36.000 0.00 0.00 36.30 1.85
3485 5724 6.441093 TTTTTCACATGATCCATAGTGCTC 57.559 37.500 0.00 0.00 32.25 4.26
3562 5801 6.567687 TCACAGTTTCTTTTGACACTTCAA 57.432 33.333 0.00 0.00 37.36 2.69
3720 5960 4.993705 AACTCCCTAAGAAACCATGTCA 57.006 40.909 0.00 0.00 0.00 3.58
3723 5963 7.283354 GGATCTTTAACTCCCTAAGAAACCATG 59.717 40.741 0.00 0.00 33.13 3.66
3731 5971 7.189079 AGAACAGGATCTTTAACTCCCTAAG 57.811 40.000 0.00 0.00 31.49 2.18
3739 5979 6.063496 ACCCCTAAGAACAGGATCTTTAAC 57.937 41.667 0.00 0.00 40.13 2.01
3740 5980 5.788533 TGACCCCTAAGAACAGGATCTTTAA 59.211 40.000 0.00 0.00 40.13 1.52
3793 6033 4.568359 CACACTAAGAACAGGATCGATTGG 59.432 45.833 0.00 0.00 0.00 3.16
3794 6034 5.171476 ACACACTAAGAACAGGATCGATTG 58.829 41.667 0.00 0.00 0.00 2.67
3795 6035 5.407407 ACACACTAAGAACAGGATCGATT 57.593 39.130 0.00 0.00 0.00 3.34
3796 6036 5.652891 AGTACACACTAAGAACAGGATCGAT 59.347 40.000 0.00 0.00 31.45 3.59
3797 6037 5.008331 AGTACACACTAAGAACAGGATCGA 58.992 41.667 0.00 0.00 31.45 3.59
3798 6038 5.312120 AGTACACACTAAGAACAGGATCG 57.688 43.478 0.00 0.00 31.45 3.69
3799 6039 5.106237 ACGAGTACACACTAAGAACAGGATC 60.106 44.000 0.00 0.00 34.21 3.36
3800 6040 4.765856 ACGAGTACACACTAAGAACAGGAT 59.234 41.667 0.00 0.00 34.21 3.24
3801 6041 4.139786 ACGAGTACACACTAAGAACAGGA 58.860 43.478 0.00 0.00 34.21 3.86
3802 6042 4.023450 TGACGAGTACACACTAAGAACAGG 60.023 45.833 0.00 0.00 34.21 4.00
3803 6043 5.104562 TGACGAGTACACACTAAGAACAG 57.895 43.478 0.00 0.00 34.21 3.16
3804 6044 5.503662 TTGACGAGTACACACTAAGAACA 57.496 39.130 0.00 0.00 34.21 3.18
3805 6045 8.684973 ATAATTGACGAGTACACACTAAGAAC 57.315 34.615 0.00 0.00 34.21 3.01
3806 6046 9.350357 GAATAATTGACGAGTACACACTAAGAA 57.650 33.333 0.00 0.00 34.21 2.52
3807 6047 8.517056 TGAATAATTGACGAGTACACACTAAGA 58.483 33.333 0.00 0.00 34.21 2.10
3808 6048 8.683550 TGAATAATTGACGAGTACACACTAAG 57.316 34.615 0.00 0.00 34.21 2.18
3809 6049 9.297586 GATGAATAATTGACGAGTACACACTAA 57.702 33.333 0.00 0.00 34.21 2.24
3834 6074 3.687125 AGATCGGGTATAGAGCATTCGA 58.313 45.455 0.00 0.00 0.00 3.71
3836 6076 3.764434 TGGAGATCGGGTATAGAGCATTC 59.236 47.826 0.00 0.00 0.00 2.67
3850 6090 0.250234 TGGCAAAGGTCTGGAGATCG 59.750 55.000 0.00 0.00 0.00 3.69
4045 6285 4.437239 CACCAGACTTAGGATTGTAGCAG 58.563 47.826 0.00 0.00 0.00 4.24
4213 6468 9.377312 CATTTTCTTGTTTTTAAGGAAGTCCAA 57.623 29.630 0.00 0.00 38.89 3.53
4214 6469 8.536175 ACATTTTCTTGTTTTTAAGGAAGTCCA 58.464 29.630 0.00 0.00 38.89 4.02
4215 6470 8.942338 ACATTTTCTTGTTTTTAAGGAAGTCC 57.058 30.769 0.00 0.00 0.00 3.85
4311 6573 3.853307 GCGGCAATAACAGTTGATATGGC 60.853 47.826 0.00 1.32 31.28 4.40
4483 6746 0.864455 GACAAGCTGACAGCAGACAC 59.136 55.000 28.43 12.06 45.56 3.67
4524 6792 9.056005 TGATATTAGTGATAAATCAACCAGCAC 57.944 33.333 0.00 0.00 38.75 4.40
4710 6981 5.242434 TGTAGCAATATGTCAAGTTCGGTT 58.758 37.500 0.00 0.00 0.00 4.44
4918 7191 1.152355 CTTTGGGCCCCACCTTTCA 60.152 57.895 22.27 0.00 39.10 2.69
4975 7248 0.319813 GCAAGAACCACCACATTGGC 60.320 55.000 0.00 0.00 42.67 4.52
4995 7268 1.797046 CGATAGGCATGCACACATCTC 59.203 52.381 21.36 4.95 32.87 2.75
5085 7358 1.796796 GAGTTCATGGCAACGGAGC 59.203 57.895 0.00 0.00 42.51 4.70
5146 7419 1.950630 GCACAACGCTTTGGCAAGG 60.951 57.895 7.92 4.78 37.00 3.61
5182 7455 0.880278 CATAACGGGCGTCCCTGATG 60.880 60.000 0.00 0.00 42.67 3.07
5281 7554 0.470833 CCAGATCCTCCATCGTCCCT 60.471 60.000 0.00 0.00 36.50 4.20
5289 7562 4.878968 TGTTAGTATCACCAGATCCTCCA 58.121 43.478 0.00 0.00 35.67 3.86
5290 7563 4.896482 ACTGTTAGTATCACCAGATCCTCC 59.104 45.833 0.00 0.00 35.67 4.30
5327 7603 1.394697 GTTTGTTGATGTCCGCAACG 58.605 50.000 0.00 0.00 46.46 4.10
5333 7609 2.483877 TCATCTGCGTTTGTTGATGTCC 59.516 45.455 0.00 0.00 37.93 4.02
5346 7622 3.607209 CGTATGACATCATCTCATCTGCG 59.393 47.826 0.00 0.00 37.76 5.18
5373 7649 7.975616 CCATATTTACAAGTTTCACCAGGAATG 59.024 37.037 0.00 0.00 34.91 2.67
5466 7742 1.141881 CAGCGTCGCCTTACATCCT 59.858 57.895 14.86 0.00 0.00 3.24
5479 7755 6.763355 ACAGATATCTATCCAAATTCAGCGT 58.237 36.000 4.54 0.00 33.17 5.07
5528 7805 3.116300 CCATACAACGATCCTGAGAACG 58.884 50.000 0.00 0.00 43.34 3.95
5540 7817 0.744414 CAGGGGCTGACCATACAACG 60.744 60.000 0.00 0.00 42.91 4.10
5551 7828 2.667418 CTGTCCTGTCAGGGGCTG 59.333 66.667 19.11 11.79 35.59 4.85
5565 7842 1.674057 CCGTTTCTCCTCAGCCTGT 59.326 57.895 0.00 0.00 0.00 4.00
5566 7843 1.078848 CCCGTTTCTCCTCAGCCTG 60.079 63.158 0.00 0.00 0.00 4.85
5567 7844 0.618968 ATCCCGTTTCTCCTCAGCCT 60.619 55.000 0.00 0.00 0.00 4.58
5568 7845 0.462759 CATCCCGTTTCTCCTCAGCC 60.463 60.000 0.00 0.00 0.00 4.85
5569 7846 0.462759 CCATCCCGTTTCTCCTCAGC 60.463 60.000 0.00 0.00 0.00 4.26
5570 7847 0.905357 ACCATCCCGTTTCTCCTCAG 59.095 55.000 0.00 0.00 0.00 3.35
5571 7848 0.613260 CACCATCCCGTTTCTCCTCA 59.387 55.000 0.00 0.00 0.00 3.86
5572 7849 0.744771 GCACCATCCCGTTTCTCCTC 60.745 60.000 0.00 0.00 0.00 3.71
5573 7850 1.201429 AGCACCATCCCGTTTCTCCT 61.201 55.000 0.00 0.00 0.00 3.69
5574 7851 0.322546 AAGCACCATCCCGTTTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
5575 7852 0.804989 CAAGCACCATCCCGTTTCTC 59.195 55.000 0.00 0.00 0.00 2.87
5576 7853 0.609131 CCAAGCACCATCCCGTTTCT 60.609 55.000 0.00 0.00 0.00 2.52
5577 7854 0.893727 ACCAAGCACCATCCCGTTTC 60.894 55.000 0.00 0.00 0.00 2.78
5578 7855 0.469144 AACCAAGCACCATCCCGTTT 60.469 50.000 0.00 0.00 0.00 3.60
5579 7856 1.152830 AACCAAGCACCATCCCGTT 59.847 52.632 0.00 0.00 0.00 4.44
5580 7857 1.603455 CAACCAAGCACCATCCCGT 60.603 57.895 0.00 0.00 0.00 5.28
5581 7858 2.993471 GCAACCAAGCACCATCCCG 61.993 63.158 0.00 0.00 0.00 5.14
5582 7859 2.649129 GGCAACCAAGCACCATCCC 61.649 63.158 0.00 0.00 35.83 3.85
5583 7860 1.187567 AAGGCAACCAAGCACCATCC 61.188 55.000 0.00 0.00 35.83 3.51
5584 7861 0.037975 CAAGGCAACCAAGCACCATC 60.038 55.000 0.00 0.00 35.83 3.51
5585 7862 1.474332 CCAAGGCAACCAAGCACCAT 61.474 55.000 0.00 0.00 35.83 3.55
5586 7863 2.132996 CCAAGGCAACCAAGCACCA 61.133 57.895 0.00 0.00 35.83 4.17
5587 7864 1.832167 TCCAAGGCAACCAAGCACC 60.832 57.895 0.00 0.00 35.83 5.01
5588 7865 1.363807 GTCCAAGGCAACCAAGCAC 59.636 57.895 0.00 0.00 35.83 4.40
5589 7866 0.469705 ATGTCCAAGGCAACCAAGCA 60.470 50.000 0.00 0.00 35.83 3.91
5590 7867 0.681175 AATGTCCAAGGCAACCAAGC 59.319 50.000 0.00 0.00 37.17 4.01
5591 7868 2.242043 AGAATGTCCAAGGCAACCAAG 58.758 47.619 0.00 0.00 37.17 3.61
5592 7869 2.380064 AGAATGTCCAAGGCAACCAA 57.620 45.000 0.00 0.00 37.17 3.67
5593 7870 2.380064 AAGAATGTCCAAGGCAACCA 57.620 45.000 0.00 0.00 37.17 3.67
5594 7871 3.751479 AAAAGAATGTCCAAGGCAACC 57.249 42.857 0.00 0.00 37.17 3.77
5595 7872 3.735746 CGAAAAAGAATGTCCAAGGCAAC 59.264 43.478 0.00 0.00 0.00 4.17
5596 7873 3.243704 CCGAAAAAGAATGTCCAAGGCAA 60.244 43.478 0.00 0.00 0.00 4.52
5597 7874 2.295909 CCGAAAAAGAATGTCCAAGGCA 59.704 45.455 0.00 0.00 0.00 4.75
5598 7875 2.352715 CCCGAAAAAGAATGTCCAAGGC 60.353 50.000 0.00 0.00 0.00 4.35
5599 7876 3.153919 TCCCGAAAAAGAATGTCCAAGG 58.846 45.455 0.00 0.00 0.00 3.61
5600 7877 4.846779 TTCCCGAAAAAGAATGTCCAAG 57.153 40.909 0.00 0.00 0.00 3.61
5601 7878 5.132897 CATTCCCGAAAAAGAATGTCCAA 57.867 39.130 4.88 0.00 42.80 3.53
5602 7879 4.782019 CATTCCCGAAAAAGAATGTCCA 57.218 40.909 4.88 0.00 42.80 4.02
5607 7884 2.562298 TGCAGCATTCCCGAAAAAGAAT 59.438 40.909 0.00 0.00 32.95 2.40
5608 7885 1.959985 TGCAGCATTCCCGAAAAAGAA 59.040 42.857 0.00 0.00 0.00 2.52
5609 7886 1.614996 TGCAGCATTCCCGAAAAAGA 58.385 45.000 0.00 0.00 0.00 2.52
5610 7887 2.437200 TTGCAGCATTCCCGAAAAAG 57.563 45.000 0.00 0.00 0.00 2.27
5611 7888 2.036992 ACATTGCAGCATTCCCGAAAAA 59.963 40.909 0.00 0.00 0.00 1.94
5612 7889 1.617850 ACATTGCAGCATTCCCGAAAA 59.382 42.857 0.00 0.00 0.00 2.29
5613 7890 1.255882 ACATTGCAGCATTCCCGAAA 58.744 45.000 0.00 0.00 0.00 3.46
5614 7891 1.255882 AACATTGCAGCATTCCCGAA 58.744 45.000 0.00 0.00 0.00 4.30
5615 7892 1.255882 AAACATTGCAGCATTCCCGA 58.744 45.000 0.00 0.00 0.00 5.14
5616 7893 2.083167 AAAACATTGCAGCATTCCCG 57.917 45.000 0.00 0.00 0.00 5.14
5633 7910 6.227298 TCCAAGCATTACTTTGGTCAAAAA 57.773 33.333 3.46 0.00 36.04 1.94
5634 7911 5.860941 TCCAAGCATTACTTTGGTCAAAA 57.139 34.783 3.46 0.00 36.04 2.44
5635 7912 6.418057 AATCCAAGCATTACTTTGGTCAAA 57.582 33.333 3.46 0.00 36.04 2.69
5636 7913 6.267471 AGAAATCCAAGCATTACTTTGGTCAA 59.733 34.615 3.46 0.00 36.04 3.18
5637 7914 5.774690 AGAAATCCAAGCATTACTTTGGTCA 59.225 36.000 3.46 0.00 36.04 4.02
5638 7915 6.151817 AGAGAAATCCAAGCATTACTTTGGTC 59.848 38.462 3.46 0.00 36.04 4.02
5639 7916 6.012745 AGAGAAATCCAAGCATTACTTTGGT 58.987 36.000 3.46 0.00 36.04 3.67
5640 7917 6.521151 AGAGAAATCCAAGCATTACTTTGG 57.479 37.500 0.00 0.00 36.04 3.28
5641 7918 6.253746 CGAGAGAAATCCAAGCATTACTTTG 58.746 40.000 0.00 0.00 36.04 2.77
5642 7919 5.355350 CCGAGAGAAATCCAAGCATTACTTT 59.645 40.000 0.00 0.00 36.04 2.66
5643 7920 4.878397 CCGAGAGAAATCCAAGCATTACTT 59.122 41.667 0.00 0.00 40.05 2.24
5644 7921 4.446371 CCGAGAGAAATCCAAGCATTACT 58.554 43.478 0.00 0.00 0.00 2.24
5645 7922 3.561725 CCCGAGAGAAATCCAAGCATTAC 59.438 47.826 0.00 0.00 0.00 1.89
5646 7923 3.808728 CCCGAGAGAAATCCAAGCATTA 58.191 45.455 0.00 0.00 0.00 1.90
5647 7924 2.648059 CCCGAGAGAAATCCAAGCATT 58.352 47.619 0.00 0.00 0.00 3.56
5648 7925 1.748591 GCCCGAGAGAAATCCAAGCAT 60.749 52.381 0.00 0.00 0.00 3.79
5649 7926 0.392998 GCCCGAGAGAAATCCAAGCA 60.393 55.000 0.00 0.00 0.00 3.91
5650 7927 1.098129 GGCCCGAGAGAAATCCAAGC 61.098 60.000 0.00 0.00 0.00 4.01
5651 7928 0.543749 AGGCCCGAGAGAAATCCAAG 59.456 55.000 0.00 0.00 0.00 3.61
5652 7929 0.991920 AAGGCCCGAGAGAAATCCAA 59.008 50.000 0.00 0.00 0.00 3.53
5653 7930 0.991920 AAAGGCCCGAGAGAAATCCA 59.008 50.000 0.00 0.00 0.00 3.41
5654 7931 1.669604 GAAAGGCCCGAGAGAAATCC 58.330 55.000 0.00 0.00 0.00 3.01
5655 7932 1.065418 TGGAAAGGCCCGAGAGAAATC 60.065 52.381 0.00 0.00 34.97 2.17
5656 7933 0.991920 TGGAAAGGCCCGAGAGAAAT 59.008 50.000 0.00 0.00 34.97 2.17
5657 7934 0.324943 CTGGAAAGGCCCGAGAGAAA 59.675 55.000 0.00 0.00 34.97 2.52
5658 7935 0.836400 ACTGGAAAGGCCCGAGAGAA 60.836 55.000 0.00 0.00 34.97 2.87
5659 7936 1.229209 ACTGGAAAGGCCCGAGAGA 60.229 57.895 0.00 0.00 34.97 3.10
5703 7980 2.014335 TGATGCACGAGGAATGTCTG 57.986 50.000 0.00 0.00 0.00 3.51
5706 7983 2.479566 AGTTGATGCACGAGGAATGT 57.520 45.000 0.00 0.00 0.00 2.71
5710 7987 1.071542 TGGAAAGTTGATGCACGAGGA 59.928 47.619 0.00 0.00 0.00 3.71
5711 7988 1.466167 CTGGAAAGTTGATGCACGAGG 59.534 52.381 0.00 0.00 0.00 4.63
5712 7989 1.466167 CCTGGAAAGTTGATGCACGAG 59.534 52.381 0.00 0.00 0.00 4.18
5713 7990 1.522668 CCTGGAAAGTTGATGCACGA 58.477 50.000 0.00 0.00 0.00 4.35
5714 7991 0.523072 CCCTGGAAAGTTGATGCACG 59.477 55.000 0.00 0.00 0.00 5.34
5724 8041 1.613437 ACGAATGTTTGCCCTGGAAAG 59.387 47.619 0.00 0.00 0.00 2.62
5742 8059 2.287487 TGACAATTCACATGTTGGCACG 60.287 45.455 0.00 0.00 38.38 5.34
5754 8071 5.453057 CCCCTGTTGAATTTGTGACAATTCA 60.453 40.000 14.65 14.65 41.90 2.57
5779 8096 7.042389 GGAAGGCGTGTAATTTCAAATTTCAAA 60.042 33.333 0.00 0.00 0.00 2.69
5780 8097 6.422400 GGAAGGCGTGTAATTTCAAATTTCAA 59.578 34.615 0.00 0.00 0.00 2.69
5781 8098 5.923684 GGAAGGCGTGTAATTTCAAATTTCA 59.076 36.000 0.00 0.00 0.00 2.69
5784 8101 5.461032 TGGAAGGCGTGTAATTTCAAATT 57.539 34.783 0.02 0.02 0.00 1.82
5818 8168 0.961753 TCGAACAGCTGCAGAGAAGA 59.038 50.000 20.43 5.42 0.00 2.87
5820 8170 1.273327 TGATCGAACAGCTGCAGAGAA 59.727 47.619 20.43 0.69 0.00 2.87
5835 8185 1.261619 GCTACCGCCAGAATTTGATCG 59.738 52.381 0.00 0.00 0.00 3.69
5839 8189 0.099436 GCAGCTACCGCCAGAATTTG 59.901 55.000 0.00 0.00 36.60 2.32
5850 8200 0.393537 ATCAACAGGCAGCAGCTACC 60.394 55.000 2.99 2.99 41.70 3.18
5905 8255 6.369890 AGACATTAATAGCTGCATATCAACCG 59.630 38.462 1.02 0.00 0.00 4.44
5917 8267 5.867716 ACGTCAAACGAAGACATTAATAGCT 59.132 36.000 6.48 0.00 46.05 3.32
5933 8283 2.202295 ACCATTTGCACACGTCAAAC 57.798 45.000 3.32 0.00 36.40 2.93
5960 8313 2.915869 TGTTAGACATGTCCTCCCCTT 58.084 47.619 22.21 4.50 0.00 3.95
5965 8318 5.163713 GCCAAGAAATGTTAGACATGTCCTC 60.164 44.000 22.21 12.88 42.50 3.71
6022 8391 7.664082 GCTACTGCTGTTGATATGTTGATAT 57.336 36.000 9.22 0.00 36.03 1.63
6024 8393 5.998454 GCTACTGCTGTTGATATGTTGAT 57.002 39.130 9.22 0.00 36.03 2.57
6050 8430 5.474876 AGGACTCAAAGCTTATGGTTGAAAG 59.525 40.000 0.00 0.00 33.79 2.62
6064 8444 3.260380 ACTGGTGAGATGAGGACTCAAAG 59.740 47.826 6.06 0.00 44.29 2.77
6069 8449 1.277557 GCAACTGGTGAGATGAGGACT 59.722 52.381 0.00 0.00 0.00 3.85
6083 8463 2.606308 GCTGTGTTTCTGGATGCAACTG 60.606 50.000 0.00 0.00 0.00 3.16
6086 8466 1.610038 CTGCTGTGTTTCTGGATGCAA 59.390 47.619 0.00 0.00 0.00 4.08
6113 8495 1.805254 CCGTCGTGTACTAGTGGGG 59.195 63.158 5.39 0.00 0.00 4.96
6127 8509 0.041839 GATGTCATTGCGATGCCGTC 60.042 55.000 9.26 5.21 38.24 4.79
6130 8512 0.657312 TTCGATGTCATTGCGATGCC 59.343 50.000 9.26 0.00 33.71 4.40
6136 8518 2.932498 TGTGCTTTTCGATGTCATTGC 58.068 42.857 0.00 0.00 0.00 3.56
6171 9080 0.321653 GAAGCTTGGGATGGTCACGT 60.322 55.000 2.10 0.00 0.00 4.49
6172 9081 0.321564 TGAAGCTTGGGATGGTCACG 60.322 55.000 2.10 0.00 0.00 4.35
6177 9086 2.165030 GTCATTGTGAAGCTTGGGATGG 59.835 50.000 2.10 0.00 0.00 3.51
6201 9110 7.437748 TCTGAAGAACAGGAAAAGAGTCTAAG 58.562 38.462 0.00 0.00 45.76 2.18
6217 9126 5.468072 TGCAAAGAAGATCACTCTGAAGAAC 59.532 40.000 0.00 0.00 0.00 3.01
6228 9137 4.206375 TGTGAAGGTTGCAAAGAAGATCA 58.794 39.130 0.00 0.00 0.00 2.92
6261 9171 1.555533 CAGGAACCCCTACTTCTCCAC 59.444 57.143 0.00 0.00 42.02 4.02
6265 9175 1.280457 CAGCAGGAACCCCTACTTCT 58.720 55.000 0.00 0.00 42.02 2.85
6299 9209 5.937975 AATAGCATGGGTGTATTGCTTTT 57.062 34.783 1.62 0.00 43.94 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.