Multiple sequence alignment - TraesCS1D01G329100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G329100 chr1D 100.000 7880 0 0 1 7880 420539478 420547357 0.000000e+00 14552.0
1 TraesCS1D01G329100 chr1B 95.581 3010 94 21 1975 4952 568527839 568530841 0.000000e+00 4785.0
2 TraesCS1D01G329100 chr1B 91.798 2024 98 23 4952 6938 568530936 568532928 0.000000e+00 2756.0
3 TraesCS1D01G329100 chr1B 94.837 1104 46 5 882 1978 568526711 568527810 0.000000e+00 1712.0
4 TraesCS1D01G329100 chr1B 81.617 903 99 31 1 865 568525383 568526256 0.000000e+00 686.0
5 TraesCS1D01G329100 chr1B 90.664 482 25 9 7412 7880 568536446 568536920 2.410000e-174 623.0
6 TraesCS1D01G329100 chr1B 81.646 158 19 7 474 627 666249286 666249437 1.070000e-23 122.0
7 TraesCS1D01G329100 chr1A 92.470 2138 107 36 4965 7054 516778196 516780327 0.000000e+00 3007.0
8 TraesCS1D01G329100 chr1A 93.166 1156 58 17 1975 3113 516775042 516776193 0.000000e+00 1677.0
9 TraesCS1D01G329100 chr1A 93.441 1113 55 8 882 1978 516773903 516775013 0.000000e+00 1635.0
10 TraesCS1D01G329100 chr1A 94.973 935 23 13 4024 4952 516777184 516778100 0.000000e+00 1445.0
11 TraesCS1D01G329100 chr1A 90.361 913 26 21 1 881 516772966 516773848 0.000000e+00 1142.0
12 TraesCS1D01G329100 chr1A 96.909 647 17 3 3098 3743 516776205 516776849 0.000000e+00 1081.0
13 TraesCS1D01G329100 chr1A 91.705 434 18 10 7459 7880 516780725 516781152 3.170000e-163 586.0
14 TraesCS1D01G329100 chr1A 95.753 259 11 0 3767 4025 516776843 516777101 1.220000e-112 418.0
15 TraesCS1D01G329100 chr1A 84.177 158 19 6 474 627 574571055 574571210 1.770000e-31 148.0
16 TraesCS1D01G329100 chr1A 94.595 74 4 0 7201 7274 516780651 516780724 1.800000e-21 115.0
17 TraesCS1D01G329100 chrUn 100.000 384 0 0 4439 4822 480939953 480940336 0.000000e+00 710.0
18 TraesCS1D01G329100 chr3D 78.165 316 49 15 3377 3684 422754541 422754238 4.860000e-42 183.0
19 TraesCS1D01G329100 chr3D 85.366 82 10 2 5514 5594 422735011 422734931 5.070000e-12 84.2
20 TraesCS1D01G329100 chr3B 78.165 316 49 15 3377 3684 551005806 551005503 4.860000e-42 183.0
21 TraesCS1D01G329100 chr3B 88.079 151 18 0 1087 1237 551007947 551007797 6.280000e-41 180.0
22 TraesCS1D01G329100 chr3B 84.459 148 17 3 4061 4206 327921362 327921505 2.960000e-29 141.0
23 TraesCS1D01G329100 chr3B 84.146 82 11 2 5514 5594 550984805 550984725 2.360000e-10 78.7
24 TraesCS1D01G329100 chr3A 78.165 316 49 15 3377 3684 566122803 566123106 4.860000e-42 183.0
25 TraesCS1D01G329100 chr3A 84.706 85 11 2 5511 5594 566135569 566135652 5.070000e-12 84.2
26 TraesCS1D01G329100 chr4B 85.806 155 19 3 4054 4207 328974354 328974202 2.280000e-35 161.0
27 TraesCS1D01G329100 chr4B 85.517 145 14 5 4063 4207 49858165 49858028 2.290000e-30 145.0
28 TraesCS1D01G329100 chr2A 85.906 149 17 4 4061 4207 633141752 633141898 1.060000e-33 156.0
29 TraesCS1D01G329100 chr2A 85.235 149 19 3 4061 4207 522923549 522923696 4.930000e-32 150.0
30 TraesCS1D01G329100 chr7A 84.049 163 20 4 471 627 701493468 701493630 1.370000e-32 152.0
31 TraesCS1D01G329100 chr2B 85.135 148 16 3 4061 4206 278320923 278321066 6.370000e-31 147.0
32 TraesCS1D01G329100 chr5B 85.517 145 14 5 4063 4207 540589291 540589428 2.290000e-30 145.0
33 TraesCS1D01G329100 chr5A 100.000 37 0 0 7281 7317 512233576 512233540 1.420000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G329100 chr1D 420539478 420547357 7879 False 14552.0 14552 100.000000 1 7880 1 chr1D.!!$F1 7879
1 TraesCS1D01G329100 chr1B 568525383 568536920 11537 False 2112.4 4785 90.899400 1 7880 5 chr1B.!!$F2 7879
2 TraesCS1D01G329100 chr1A 516772966 516781152 8186 False 1234.0 3007 93.708111 1 7880 9 chr1A.!!$F2 7879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 764 0.545646 ATGAGCCCTTGAGCCTTCTC 59.454 55.000 0.00 0.0 39.78 2.87 F
1570 2071 1.062886 TGTGTGGTTGAATTTGGGGGA 60.063 47.619 0.00 0.0 0.00 4.81 F
2474 3056 1.340889 TGGCGTTACGACCAGTTAAGT 59.659 47.619 8.55 0.0 31.60 2.24 F
2880 3463 1.002544 GAGGGACTTGGTCTTGGTCAG 59.997 57.143 0.00 0.0 41.55 3.51 F
3264 3879 1.671328 GATGGCTTAGGAAAGAACGGC 59.329 52.381 0.00 0.0 34.37 5.68 F
3836 4451 2.827921 GTGTTTGAGGAAATGCCCTGAT 59.172 45.455 0.00 0.0 36.49 2.90 F
5230 6040 1.329906 GCTTCTGCCATGACGAGAATG 59.670 52.381 0.00 0.0 0.00 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 2271 0.972983 TCCTCTTCCTTCCTCTGCCG 60.973 60.000 0.00 0.0 0.00 5.69 R
2880 3463 2.357952 GGTAAACCGATTTCCCATGAGC 59.642 50.000 0.00 0.0 0.00 4.26 R
4152 4865 2.600792 CGCAGAAAAGTGAACAGCAGAC 60.601 50.000 0.00 0.0 0.00 3.51 R
4437 5151 7.556275 CACCAGTTAGAATATAAAAAGGGAGCA 59.444 37.037 0.00 0.0 0.00 4.26 R
5079 5889 1.285962 AGCATAGTCCAAAGGCCACAT 59.714 47.619 5.01 0.0 0.00 3.21 R
5654 6466 1.035139 ACACTTCAAGCAAGCCCAAG 58.965 50.000 0.00 0.0 35.17 3.61 R
6956 7833 0.036010 CCATGGAGCGTTTCAGAGGT 60.036 55.000 5.56 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 124 4.223144 TGCCCACTGATAAGATAGTGCTA 58.777 43.478 0.00 0.00 42.21 3.49
167 170 2.106511 GGCATAAGAATCTGGGGCACTA 59.893 50.000 0.00 0.00 0.00 2.74
256 259 1.024579 CACGGACCTGGTACATTGCC 61.025 60.000 10.24 0.00 38.20 4.52
389 433 2.370189 GCTCTTCCCAGTACCTATGCAT 59.630 50.000 3.79 3.79 0.00 3.96
396 440 3.840666 CCCAGTACCTATGCATACCTCAT 59.159 47.826 1.16 0.00 0.00 2.90
404 448 1.655484 TGCATACCTCATTGCACTCG 58.345 50.000 0.00 0.00 43.54 4.18
406 450 1.594862 GCATACCTCATTGCACTCGTC 59.405 52.381 0.00 0.00 38.72 4.20
523 569 3.897505 CCTCCAACCCTCTTTTGTTCAAT 59.102 43.478 0.00 0.00 0.00 2.57
597 646 2.297698 TTGAACAGTAGGTCGGAGGA 57.702 50.000 0.00 0.00 0.00 3.71
626 679 4.347583 TGAAGGTTTCAAATTTGCATCCCT 59.652 37.500 13.54 11.85 36.59 4.20
627 680 4.276058 AGGTTTCAAATTTGCATCCCTG 57.724 40.909 13.54 0.00 0.00 4.45
631 684 2.886913 TCAAATTTGCATCCCTGACCA 58.113 42.857 13.54 0.00 0.00 4.02
633 686 2.299582 CAAATTTGCATCCCTGACCACA 59.700 45.455 5.01 0.00 0.00 4.17
634 687 2.537633 ATTTGCATCCCTGACCACAT 57.462 45.000 0.00 0.00 0.00 3.21
635 688 3.668141 ATTTGCATCCCTGACCACATA 57.332 42.857 0.00 0.00 0.00 2.29
636 689 3.448093 TTTGCATCCCTGACCACATAA 57.552 42.857 0.00 0.00 0.00 1.90
637 690 3.668141 TTGCATCCCTGACCACATAAT 57.332 42.857 0.00 0.00 0.00 1.28
638 691 3.668141 TGCATCCCTGACCACATAATT 57.332 42.857 0.00 0.00 0.00 1.40
685 738 7.770433 CAGGTGATGATCCTTATTAACACTTCA 59.230 37.037 0.00 0.00 32.37 3.02
711 764 0.545646 ATGAGCCCTTGAGCCTTCTC 59.454 55.000 0.00 0.00 39.78 2.87
757 811 1.069775 AACCGGGTTTCCATGGTAGT 58.930 50.000 12.58 0.00 33.61 2.73
896 1391 4.099266 TGCATCTTAGTTTTGTTTGGCTGT 59.901 37.500 0.00 0.00 0.00 4.40
913 1408 4.577693 TGGCTGTCATTCAATTGATCTAGC 59.422 41.667 9.40 13.81 33.19 3.42
921 1416 5.329191 TTCAATTGATCTAGCCCATCCAT 57.671 39.130 9.40 0.00 0.00 3.41
1015 1511 1.689582 CCCGGCTAAACCCTCTCCT 60.690 63.158 0.00 0.00 33.26 3.69
1055 1552 2.761213 GCCCCCAAATCAGGCCTG 60.761 66.667 27.87 27.87 41.00 4.85
1057 1554 2.361771 CCCCAAATCAGGCCTGCT 59.638 61.111 28.91 16.88 0.00 4.24
1389 1890 1.536662 ACTCCAAGGCCCTCGAGTT 60.537 57.895 12.31 0.00 31.58 3.01
1495 1996 2.658593 CCGGTTATGCTCTCGCCG 60.659 66.667 0.00 0.00 41.82 6.46
1501 2002 1.748329 TTATGCTCTCGCCGGATGCT 61.748 55.000 5.05 0.00 38.05 3.79
1510 2011 2.825836 CCGGATGCTGACAAGGCC 60.826 66.667 0.00 0.00 0.00 5.19
1557 2058 1.067213 GTGCTGGTTGTTTTGTGTGGT 60.067 47.619 0.00 0.00 0.00 4.16
1570 2071 1.062886 TGTGTGGTTGAATTTGGGGGA 60.063 47.619 0.00 0.00 0.00 4.81
1589 2090 2.489722 GGAAACTGTCTGATTTGGAGCC 59.510 50.000 0.00 0.00 0.00 4.70
1603 2104 2.235016 TGGAGCCGTTTATTTGCTTGT 58.765 42.857 0.00 0.00 34.99 3.16
1626 2127 3.131046 AGGAGGTGCACAACTTTTTCAAG 59.869 43.478 20.43 0.00 35.92 3.02
1704 2205 4.157120 ATCAGGGTACGCGTGGGC 62.157 66.667 24.59 11.85 0.00 5.36
1882 2389 2.093235 GGGAAGTTCCTGAGGTGATGAG 60.093 54.545 21.25 0.00 36.57 2.90
1954 2465 4.023279 GCACTGTAACACATTCATTCCACA 60.023 41.667 0.00 0.00 0.00 4.17
1984 2528 4.451096 ACATAGTTCACAGGCTTAACAACG 59.549 41.667 6.84 0.00 0.00 4.10
1996 2540 5.986936 GGCTTAACAACGCCTCTATATTTC 58.013 41.667 0.00 0.00 42.98 2.17
2161 2705 8.496916 GGGGTAATAGGAAAAATGTTAGGACTA 58.503 37.037 0.00 0.00 0.00 2.59
2207 2751 5.631119 TCTCTCATTGATGGCATCATTCAT 58.369 37.500 29.22 17.75 39.39 2.57
2210 2754 7.888546 TCTCTCATTGATGGCATCATTCATTAT 59.111 33.333 29.22 16.34 39.39 1.28
2212 2756 7.888546 TCTCATTGATGGCATCATTCATTATCT 59.111 33.333 29.22 4.95 39.39 1.98
2379 2923 6.698107 CATGTAATCATGGATTTGCGTTTTG 58.302 36.000 0.00 0.00 45.30 2.44
2400 2944 8.673711 GTTTTGGGGATAAAATGGCTAAAATTC 58.326 33.333 0.00 0.00 32.71 2.17
2463 3045 9.726232 TTTATCTATAGCTATTATGGCGTTACG 57.274 33.333 12.39 0.00 34.52 3.18
2473 3055 2.068837 TGGCGTTACGACCAGTTAAG 57.931 50.000 8.55 0.00 31.60 1.85
2474 3056 1.340889 TGGCGTTACGACCAGTTAAGT 59.659 47.619 8.55 0.00 31.60 2.24
2475 3057 2.556189 TGGCGTTACGACCAGTTAAGTA 59.444 45.455 8.55 0.00 31.60 2.24
2476 3058 3.005261 TGGCGTTACGACCAGTTAAGTAA 59.995 43.478 8.55 0.00 31.60 2.24
2477 3059 3.987220 GGCGTTACGACCAGTTAAGTAAA 59.013 43.478 9.62 0.00 31.88 2.01
2478 3060 4.090498 GGCGTTACGACCAGTTAAGTAAAG 59.910 45.833 9.62 0.00 33.75 1.85
2479 3061 4.090498 GCGTTACGACCAGTTAAGTAAAGG 59.910 45.833 9.62 0.00 32.16 3.11
2480 3062 5.460646 CGTTACGACCAGTTAAGTAAAGGA 58.539 41.667 0.00 0.00 31.88 3.36
2481 3063 6.095377 CGTTACGACCAGTTAAGTAAAGGAT 58.905 40.000 0.00 0.00 31.88 3.24
2482 3064 7.250569 CGTTACGACCAGTTAAGTAAAGGATA 58.749 38.462 0.00 0.00 31.88 2.59
2483 3065 7.430502 CGTTACGACCAGTTAAGTAAAGGATAG 59.569 40.741 0.00 0.00 31.88 2.08
2484 3066 6.218108 ACGACCAGTTAAGTAAAGGATAGG 57.782 41.667 0.00 0.00 0.00 2.57
2485 3067 5.718607 ACGACCAGTTAAGTAAAGGATAGGT 59.281 40.000 0.00 0.00 0.00 3.08
2486 3068 6.040878 CGACCAGTTAAGTAAAGGATAGGTG 58.959 44.000 0.00 0.00 0.00 4.00
2487 3069 5.742063 ACCAGTTAAGTAAAGGATAGGTGC 58.258 41.667 0.00 0.00 0.00 5.01
2488 3070 5.487845 ACCAGTTAAGTAAAGGATAGGTGCT 59.512 40.000 0.00 0.00 0.00 4.40
2489 3071 6.049790 CCAGTTAAGTAAAGGATAGGTGCTC 58.950 44.000 0.00 0.00 0.00 4.26
2490 3072 6.127026 CCAGTTAAGTAAAGGATAGGTGCTCT 60.127 42.308 0.00 0.00 0.00 4.09
2491 3073 6.758886 CAGTTAAGTAAAGGATAGGTGCTCTG 59.241 42.308 0.00 0.00 0.00 3.35
2492 3074 6.440965 AGTTAAGTAAAGGATAGGTGCTCTGT 59.559 38.462 0.00 0.00 0.00 3.41
2493 3075 5.763876 AAGTAAAGGATAGGTGCTCTGTT 57.236 39.130 0.00 0.00 0.00 3.16
2494 3076 5.346181 AGTAAAGGATAGGTGCTCTGTTC 57.654 43.478 0.00 0.00 0.00 3.18
2495 3077 5.026790 AGTAAAGGATAGGTGCTCTGTTCT 58.973 41.667 0.00 0.00 0.00 3.01
2496 3078 6.195700 AGTAAAGGATAGGTGCTCTGTTCTA 58.804 40.000 0.00 0.00 0.00 2.10
2497 3079 5.346181 AAAGGATAGGTGCTCTGTTCTAC 57.654 43.478 0.00 0.00 0.00 2.59
2498 3080 3.982516 AGGATAGGTGCTCTGTTCTACA 58.017 45.455 0.00 0.00 0.00 2.74
2499 3081 4.353777 AGGATAGGTGCTCTGTTCTACAA 58.646 43.478 0.00 0.00 0.00 2.41
2500 3082 4.965532 AGGATAGGTGCTCTGTTCTACAAT 59.034 41.667 0.00 0.00 0.00 2.71
2704 3287 7.180051 TCCTATTAGGTTACCGTTTTCAAGGTA 59.820 37.037 9.57 0.00 38.04 3.08
2775 3358 3.764237 TGGAAACTTCTGGTAGGTGAC 57.236 47.619 0.00 0.00 0.00 3.67
2880 3463 1.002544 GAGGGACTTGGTCTTGGTCAG 59.997 57.143 0.00 0.00 41.55 3.51
2901 3484 2.357952 GCTCATGGGAAATCGGTTTACC 59.642 50.000 16.08 16.08 46.84 2.85
3059 3646 4.093115 CAGTAGACAGTACACACTACCTCG 59.907 50.000 14.90 5.74 36.77 4.63
3069 3656 2.165641 CACACTACCTCGCCACTATCAA 59.834 50.000 0.00 0.00 0.00 2.57
3264 3879 1.671328 GATGGCTTAGGAAAGAACGGC 59.329 52.381 0.00 0.00 34.37 5.68
3276 3891 6.415573 AGGAAAGAACGGCTTTATCAACTAT 58.584 36.000 5.65 0.00 46.52 2.12
3312 3927 4.009370 ACAAACCTAGGAACTTCTGCTC 57.991 45.455 17.98 0.00 41.75 4.26
3496 4111 7.566658 AGGGAAGGAGATATCCTCAAATTAG 57.433 40.000 9.89 0.00 43.76 1.73
3758 4373 5.399301 CCTTTTGTGATCTTTGCTGTAAACG 59.601 40.000 0.00 0.00 0.00 3.60
3836 4451 2.827921 GTGTTTGAGGAAATGCCCTGAT 59.172 45.455 0.00 0.00 36.49 2.90
4148 4861 9.378551 AGTTACATATCACTTGCTAAATCGAAA 57.621 29.630 0.00 0.00 0.00 3.46
4437 5151 5.476945 GTGAGGTTTTTATGGTGGACTTCAT 59.523 40.000 0.00 0.00 30.71 2.57
5014 5824 5.923733 TGTTTGGTATGGTCAAAACTTGT 57.076 34.783 0.00 0.00 36.11 3.16
5018 5828 3.894427 TGGTATGGTCAAAACTTGTGCAT 59.106 39.130 0.00 0.00 0.00 3.96
5109 5919 6.542370 GCCTTTGGACTATGCTGACTAAAATA 59.458 38.462 0.00 0.00 0.00 1.40
5148 5958 5.835113 TTTCCTTTGTGGATATTAGCTGC 57.165 39.130 0.00 0.00 45.68 5.25
5230 6040 1.329906 GCTTCTGCCATGACGAGAATG 59.670 52.381 0.00 0.00 0.00 2.67
5245 6055 8.996024 TGACGAGAATGATAATGTTACTTTGA 57.004 30.769 0.00 0.00 0.00 2.69
5495 6307 7.744087 ACATCATATCCTAATTTTTGCGCTA 57.256 32.000 9.73 0.00 0.00 4.26
5594 6406 5.300286 AGCCTATTGATTTTGAGTGGTATGC 59.700 40.000 0.00 0.00 0.00 3.14
5654 6466 9.838339 TCAAAATCATTCTCTTAACTCTATCCC 57.162 33.333 0.00 0.00 0.00 3.85
5782 6621 3.619733 GCAGGGAACTCATGACATACACA 60.620 47.826 0.00 0.00 40.21 3.72
5827 6666 6.989169 CAGAAACCGATTTGGATATTCTCTCT 59.011 38.462 0.00 0.00 42.00 3.10
5879 6718 1.780503 TGAGCCTGCTGCATCTAGTA 58.219 50.000 1.31 0.00 44.83 1.82
6141 6980 9.643693 ATGCTTTTACGATTTGATTTTGAAGAT 57.356 25.926 0.00 0.00 0.00 2.40
6313 7177 1.026584 GCCACTACGGTGTTTGGTTT 58.973 50.000 0.00 0.00 41.53 3.27
6318 7182 5.124297 GCCACTACGGTGTTTGGTTTATATT 59.876 40.000 0.00 0.00 41.53 1.28
6319 7183 6.349528 GCCACTACGGTGTTTGGTTTATATTT 60.350 38.462 0.00 0.00 41.53 1.40
6353 7220 7.293745 GCATATACAACCGAGAAATTCATCAG 58.706 38.462 0.00 0.00 0.00 2.90
6375 7242 4.694509 AGCTGAGAAACACTGCTGATAAAG 59.305 41.667 0.00 0.00 40.09 1.85
6406 7273 1.267261 TGTCGGTTATTTTTGGCACGG 59.733 47.619 0.00 0.00 0.00 4.94
6439 7306 0.475044 TTGCGTAACCTCCTTTGGGT 59.525 50.000 0.00 0.00 38.94 4.51
6526 7393 4.161942 AGGGAAACTGATCTGTCATCTCAG 59.838 45.833 15.93 9.25 41.69 3.35
6564 7432 1.211949 TGGCTAAGGTATGGTGCTTCC 59.788 52.381 0.00 0.00 0.00 3.46
6565 7433 1.477014 GGCTAAGGTATGGTGCTTCCC 60.477 57.143 0.00 0.00 34.77 3.97
6567 7435 2.919228 CTAAGGTATGGTGCTTCCCAC 58.081 52.381 0.00 0.00 43.90 4.61
6599 7471 8.121305 TCTGAATTAAATGGCACTGTTTATGT 57.879 30.769 0.00 0.00 0.00 2.29
6636 7508 7.308830 CCTGCTTCTGTGTTTCTATTTTAGCTT 60.309 37.037 0.00 0.00 0.00 3.74
6740 7613 4.388773 TCAAAACTATGTACTGAGCGCAAG 59.611 41.667 11.47 9.66 43.44 4.01
6790 7664 0.303796 GCCGTGCCGTAATAAAGCTC 59.696 55.000 0.00 0.00 0.00 4.09
6875 7752 2.413837 GACGAAGCTGAGGTTTTGCTA 58.586 47.619 0.00 0.00 35.85 3.49
6888 7765 5.899299 AGGTTTTGCTAGATGATTCATTGC 58.101 37.500 0.00 6.89 0.00 3.56
6914 7791 5.241064 TCCCCATCATTTTGTTTTGCATTTG 59.759 36.000 0.00 0.00 0.00 2.32
6938 7815 6.323739 TGAAGTTTCCTGCTTATTTTGGTTCT 59.676 34.615 0.00 0.00 0.00 3.01
6939 7816 6.332735 AGTTTCCTGCTTATTTTGGTTCTC 57.667 37.500 0.00 0.00 0.00 2.87
6940 7817 5.243954 AGTTTCCTGCTTATTTTGGTTCTCC 59.756 40.000 0.00 0.00 0.00 3.71
6942 7819 4.335416 TCCTGCTTATTTTGGTTCTCCTG 58.665 43.478 0.00 0.00 34.23 3.86
6943 7820 3.445096 CCTGCTTATTTTGGTTCTCCTGG 59.555 47.826 0.00 0.00 34.23 4.45
6944 7821 4.335416 CTGCTTATTTTGGTTCTCCTGGA 58.665 43.478 0.00 0.00 34.23 3.86
6945 7822 4.079253 TGCTTATTTTGGTTCTCCTGGAC 58.921 43.478 0.00 0.00 34.23 4.02
6946 7823 4.202567 TGCTTATTTTGGTTCTCCTGGACT 60.203 41.667 0.00 0.00 34.23 3.85
6948 7825 5.560724 CTTATTTTGGTTCTCCTGGACTGA 58.439 41.667 0.00 0.00 34.23 3.41
6951 7828 1.079750 GGTTCTCCTGGACTGACGC 60.080 63.158 0.00 0.00 0.00 5.19
6952 7829 1.079750 GTTCTCCTGGACTGACGCC 60.080 63.158 0.00 0.00 0.00 5.68
6954 7831 1.536073 TTCTCCTGGACTGACGCCTG 61.536 60.000 0.00 0.00 0.00 4.85
6955 7832 2.997315 TCCTGGACTGACGCCTGG 60.997 66.667 0.00 0.00 43.65 4.45
6956 7833 2.997315 CCTGGACTGACGCCTGGA 60.997 66.667 0.00 0.00 44.69 3.86
6957 7834 2.262915 CTGGACTGACGCCTGGAC 59.737 66.667 0.00 0.00 0.00 4.02
6958 7835 3.302347 CTGGACTGACGCCTGGACC 62.302 68.421 0.00 0.00 0.00 4.46
6959 7836 2.997897 GGACTGACGCCTGGACCT 60.998 66.667 0.00 0.00 0.00 3.85
6960 7837 2.574399 GACTGACGCCTGGACCTC 59.426 66.667 0.00 0.00 0.00 3.85
6961 7838 1.979693 GACTGACGCCTGGACCTCT 60.980 63.158 0.00 0.00 0.00 3.69
6962 7839 2.219325 GACTGACGCCTGGACCTCTG 62.219 65.000 0.00 0.00 0.00 3.35
6963 7840 1.979155 CTGACGCCTGGACCTCTGA 60.979 63.158 0.00 0.00 0.00 3.27
6964 7841 1.533033 TGACGCCTGGACCTCTGAA 60.533 57.895 0.00 0.00 0.00 3.02
6965 7842 1.118965 TGACGCCTGGACCTCTGAAA 61.119 55.000 0.00 0.00 0.00 2.69
6966 7843 0.670854 GACGCCTGGACCTCTGAAAC 60.671 60.000 0.00 0.00 0.00 2.78
6967 7844 1.738099 CGCCTGGACCTCTGAAACG 60.738 63.158 0.00 0.00 0.00 3.60
6968 7845 2.035442 GCCTGGACCTCTGAAACGC 61.035 63.158 0.00 0.00 0.00 4.84
6970 7847 0.390472 CCTGGACCTCTGAAACGCTC 60.390 60.000 0.00 0.00 0.00 5.03
6971 7848 0.390472 CTGGACCTCTGAAACGCTCC 60.390 60.000 0.00 0.00 0.00 4.70
6972 7849 1.118965 TGGACCTCTGAAACGCTCCA 61.119 55.000 0.00 0.00 0.00 3.86
6976 7853 0.036010 CCTCTGAAACGCTCCATGGT 60.036 55.000 12.58 0.00 0.00 3.55
6977 7854 1.081892 CTCTGAAACGCTCCATGGTG 58.918 55.000 12.58 10.95 0.00 4.17
6980 7857 2.676471 AAACGCTCCATGGTGGCC 60.676 61.111 20.55 0.00 37.47 5.36
6981 7858 3.505790 AAACGCTCCATGGTGGCCA 62.506 57.895 20.55 0.00 37.47 5.36
6985 7867 2.976490 GCTCCATGGTGGCCAGACT 61.976 63.158 5.11 0.00 36.75 3.24
6988 7870 2.273449 CATGGTGGCCAGACTCCC 59.727 66.667 5.11 3.39 36.75 4.30
7003 7885 2.434359 CCCGGACCTCTGAAACGC 60.434 66.667 0.73 0.00 0.00 4.84
7005 7887 1.738099 CCGGACCTCTGAAACGCTG 60.738 63.158 0.00 0.00 0.00 5.18
7028 7910 1.033574 GGTCTGGTCTCGATAGGTGG 58.966 60.000 0.00 0.00 0.00 4.61
7029 7911 1.409802 GGTCTGGTCTCGATAGGTGGA 60.410 57.143 0.00 0.00 0.00 4.02
7034 7916 1.133730 GGTCTCGATAGGTGGACCTCT 60.134 57.143 11.04 0.00 44.77 3.69
7052 7934 1.151810 TGGAACTCCAGGCCCTCTT 60.152 57.895 0.00 0.00 42.01 2.85
7053 7935 0.772124 TGGAACTCCAGGCCCTCTTT 60.772 55.000 0.00 0.00 42.01 2.52
7054 7936 0.405973 GGAACTCCAGGCCCTCTTTT 59.594 55.000 0.00 0.00 35.64 2.27
7055 7937 1.203063 GGAACTCCAGGCCCTCTTTTT 60.203 52.381 0.00 0.00 35.64 1.94
7103 7987 8.272584 CTTGATACACGAGAAAAGGACATTCCT 61.273 40.741 0.00 0.00 39.33 3.36
7126 8011 7.179516 TCCTAGTACACATCCTGTTACAATTCA 59.820 37.037 0.00 0.00 33.91 2.57
7127 8012 7.277981 CCTAGTACACATCCTGTTACAATTCAC 59.722 40.741 0.00 0.00 33.91 3.18
7129 8014 5.689383 ACACATCCTGTTACAATTCACAC 57.311 39.130 0.00 0.00 0.00 3.82
7135 8020 3.186409 CCTGTTACAATTCACACACTCCG 59.814 47.826 0.00 0.00 0.00 4.63
7139 8024 1.140052 ACAATTCACACACTCCGTCCA 59.860 47.619 0.00 0.00 0.00 4.02
7150 8036 4.457603 CACACTCCGTCCAATCCAAATTAA 59.542 41.667 0.00 0.00 0.00 1.40
7152 8038 5.714806 ACACTCCGTCCAATCCAAATTAATT 59.285 36.000 0.00 0.00 0.00 1.40
7153 8039 6.035843 CACTCCGTCCAATCCAAATTAATTG 58.964 40.000 0.39 0.00 38.84 2.32
7154 8040 5.949354 ACTCCGTCCAATCCAAATTAATTGA 59.051 36.000 0.39 0.00 41.85 2.57
7155 8041 6.435904 ACTCCGTCCAATCCAAATTAATTGAA 59.564 34.615 0.39 0.00 41.85 2.69
7156 8042 7.124147 ACTCCGTCCAATCCAAATTAATTGAAT 59.876 33.333 0.39 0.00 41.85 2.57
7158 8044 8.317679 TCCGTCCAATCCAAATTAATTGAATTT 58.682 29.630 0.39 0.00 46.60 1.82
7159 8045 9.593134 CCGTCCAATCCAAATTAATTGAATTTA 57.407 29.630 0.39 0.00 44.35 1.40
7172 8058 5.774498 ATTGAATTTAAATCGGAGGGAGC 57.226 39.130 0.10 0.00 0.00 4.70
7173 8059 4.229304 TGAATTTAAATCGGAGGGAGCA 57.771 40.909 0.10 0.00 0.00 4.26
7174 8060 4.594970 TGAATTTAAATCGGAGGGAGCAA 58.405 39.130 0.10 0.00 0.00 3.91
7175 8061 5.013547 TGAATTTAAATCGGAGGGAGCAAA 58.986 37.500 0.10 0.00 0.00 3.68
7176 8062 5.656416 TGAATTTAAATCGGAGGGAGCAAAT 59.344 36.000 0.10 0.00 0.00 2.32
7178 8064 5.576447 TTTAAATCGGAGGGAGCAAATTC 57.424 39.130 0.00 0.00 0.00 2.17
7275 11465 4.814234 TCTGTTTGACGCATATATTCCACC 59.186 41.667 0.00 0.00 0.00 4.61
7276 11466 3.558006 TGTTTGACGCATATATTCCACCG 59.442 43.478 0.00 0.00 0.00 4.94
7277 11467 3.462483 TTGACGCATATATTCCACCGT 57.538 42.857 0.00 0.00 0.00 4.83
7278 11468 3.462483 TGACGCATATATTCCACCGTT 57.538 42.857 0.00 0.00 0.00 4.44
7279 11469 3.127589 TGACGCATATATTCCACCGTTG 58.872 45.455 0.00 0.00 0.00 4.10
7281 11471 4.202131 TGACGCATATATTCCACCGTTGTA 60.202 41.667 0.00 0.00 0.00 2.41
7282 11472 4.053295 ACGCATATATTCCACCGTTGTAC 58.947 43.478 0.00 0.00 0.00 2.90
7284 11474 4.384846 CGCATATATTCCACCGTTGTACTC 59.615 45.833 0.00 0.00 0.00 2.59
7285 11475 4.689345 GCATATATTCCACCGTTGTACTCC 59.311 45.833 0.00 0.00 0.00 3.85
7286 11476 3.832615 ATATTCCACCGTTGTACTCCC 57.167 47.619 0.00 0.00 0.00 4.30
7287 11477 1.652947 ATTCCACCGTTGTACTCCCT 58.347 50.000 0.00 0.00 0.00 4.20
7288 11478 0.971386 TTCCACCGTTGTACTCCCTC 59.029 55.000 0.00 0.00 0.00 4.30
7289 11479 0.901580 TCCACCGTTGTACTCCCTCC 60.902 60.000 0.00 0.00 0.00 4.30
7290 11480 1.214589 CACCGTTGTACTCCCTCCG 59.785 63.158 0.00 0.00 0.00 4.63
7291 11481 1.228675 ACCGTTGTACTCCCTCCGT 60.229 57.895 0.00 0.00 0.00 4.69
7292 11482 0.829182 ACCGTTGTACTCCCTCCGTT 60.829 55.000 0.00 0.00 0.00 4.44
7293 11483 0.108945 CCGTTGTACTCCCTCCGTTC 60.109 60.000 0.00 0.00 0.00 3.95
7294 11484 0.455633 CGTTGTACTCCCTCCGTTCG 60.456 60.000 0.00 0.00 0.00 3.95
7295 11485 0.735287 GTTGTACTCCCTCCGTTCGC 60.735 60.000 0.00 0.00 0.00 4.70
7296 11486 0.896940 TTGTACTCCCTCCGTTCGCT 60.897 55.000 0.00 0.00 0.00 4.93
7297 11487 0.896940 TGTACTCCCTCCGTTCGCTT 60.897 55.000 0.00 0.00 0.00 4.68
7298 11488 0.245813 GTACTCCCTCCGTTCGCTTT 59.754 55.000 0.00 0.00 0.00 3.51
7299 11489 0.971386 TACTCCCTCCGTTCGCTTTT 59.029 50.000 0.00 0.00 0.00 2.27
7300 11490 0.602905 ACTCCCTCCGTTCGCTTTTG 60.603 55.000 0.00 0.00 0.00 2.44
7301 11491 0.602905 CTCCCTCCGTTCGCTTTTGT 60.603 55.000 0.00 0.00 0.00 2.83
7302 11492 0.680618 TCCCTCCGTTCGCTTTTGTA 59.319 50.000 0.00 0.00 0.00 2.41
7303 11493 1.070445 TCCCTCCGTTCGCTTTTGTAA 59.930 47.619 0.00 0.00 0.00 2.41
7304 11494 1.463444 CCCTCCGTTCGCTTTTGTAAG 59.537 52.381 0.00 0.00 34.36 2.34
7305 11495 2.409975 CCTCCGTTCGCTTTTGTAAGA 58.590 47.619 0.00 0.00 32.92 2.10
7306 11496 2.157085 CCTCCGTTCGCTTTTGTAAGAC 59.843 50.000 0.00 0.00 32.92 3.01
7307 11497 1.788308 TCCGTTCGCTTTTGTAAGACG 59.212 47.619 0.00 0.00 32.92 4.18
7308 11498 1.523934 CCGTTCGCTTTTGTAAGACGT 59.476 47.619 0.00 0.00 34.63 4.34
7309 11499 2.033492 CCGTTCGCTTTTGTAAGACGTT 60.033 45.455 0.00 0.00 34.63 3.99
7310 11500 3.544637 CCGTTCGCTTTTGTAAGACGTTT 60.545 43.478 0.00 0.00 34.63 3.60
7311 11501 4.023783 CGTTCGCTTTTGTAAGACGTTTT 58.976 39.130 0.00 0.00 34.63 2.43
7312 11502 5.189625 CGTTCGCTTTTGTAAGACGTTTTA 58.810 37.500 0.00 0.00 34.63 1.52
7313 11503 5.332594 CGTTCGCTTTTGTAAGACGTTTTAG 59.667 40.000 0.00 0.00 34.63 1.85
7314 11504 6.413269 GTTCGCTTTTGTAAGACGTTTTAGA 58.587 36.000 0.00 0.00 34.63 2.10
7315 11505 5.966335 TCGCTTTTGTAAGACGTTTTAGAC 58.034 37.500 0.00 0.00 34.63 2.59
7316 11506 5.519566 TCGCTTTTGTAAGACGTTTTAGACA 59.480 36.000 0.00 0.00 34.63 3.41
7317 11507 6.035866 TCGCTTTTGTAAGACGTTTTAGACAA 59.964 34.615 0.00 1.19 34.63 3.18
7318 11508 6.849305 CGCTTTTGTAAGACGTTTTAGACAAT 59.151 34.615 7.69 0.00 32.92 2.71
7319 11509 8.005466 CGCTTTTGTAAGACGTTTTAGACAATA 58.995 33.333 7.69 3.75 32.92 1.90
7320 11510 9.821662 GCTTTTGTAAGACGTTTTAGACAATAT 57.178 29.630 7.69 0.00 32.92 1.28
7349 11539 9.868277 AAAACAGTTCAATTTCAGTTGTATCAA 57.132 25.926 0.00 0.00 0.00 2.57
7350 11540 9.868277 AAACAGTTCAATTTCAGTTGTATCAAA 57.132 25.926 0.00 0.00 0.00 2.69
7352 11542 9.467258 ACAGTTCAATTTCAGTTGTATCAAATG 57.533 29.630 3.98 3.98 0.00 2.32
7353 11543 9.681692 CAGTTCAATTTCAGTTGTATCAAATGA 57.318 29.630 8.22 8.22 0.00 2.57
7408 11598 9.748708 TCAAATGACTTACAAAATGAAGAAAGG 57.251 29.630 0.00 0.00 0.00 3.11
7409 11599 8.981647 CAAATGACTTACAAAATGAAGAAAGGG 58.018 33.333 0.00 0.00 0.00 3.95
7410 11600 8.477419 AATGACTTACAAAATGAAGAAAGGGA 57.523 30.769 0.00 0.00 0.00 4.20
7417 11607 7.751768 ACAAAATGAAGAAAGGGAGTAAGAG 57.248 36.000 0.00 0.00 0.00 2.85
7427 11617 8.164057 AGAAAGGGAGTAAGAGAAATACCAAT 57.836 34.615 0.00 0.00 0.00 3.16
7428 11618 8.615705 AGAAAGGGAGTAAGAGAAATACCAATT 58.384 33.333 0.00 0.00 0.00 2.32
7429 11619 8.809468 AAAGGGAGTAAGAGAAATACCAATTC 57.191 34.615 0.00 0.00 0.00 2.17
7430 11620 6.901300 AGGGAGTAAGAGAAATACCAATTCC 58.099 40.000 0.00 0.00 0.00 3.01
7453 11643 3.066208 TCCCCTATTTCTGCTGGAGAT 57.934 47.619 0.00 0.00 0.00 2.75
7464 11654 2.237143 CTGCTGGAGATAACCTGTTCCA 59.763 50.000 0.00 0.00 37.38 3.53
7481 11671 3.627395 TCCATACGGAGAACTTGCAAT 57.373 42.857 0.00 0.00 35.91 3.56
7509 11699 1.769465 AGCATCTCATCTCAGGCACAT 59.231 47.619 0.00 0.00 0.00 3.21
7512 11702 2.975732 TCTCATCTCAGGCACATCAC 57.024 50.000 0.00 0.00 0.00 3.06
7513 11703 2.181975 TCTCATCTCAGGCACATCACA 58.818 47.619 0.00 0.00 0.00 3.58
7514 11704 2.770232 TCTCATCTCAGGCACATCACAT 59.230 45.455 0.00 0.00 0.00 3.21
7515 11705 3.199289 TCTCATCTCAGGCACATCACATT 59.801 43.478 0.00 0.00 0.00 2.71
7517 11707 4.700700 TCATCTCAGGCACATCACATTAG 58.299 43.478 0.00 0.00 0.00 1.73
7518 11708 2.910199 TCTCAGGCACATCACATTAGC 58.090 47.619 0.00 0.00 0.00 3.09
7561 11758 7.688478 AATCATCAATTATTGCAACATGTCG 57.312 32.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 170 5.207110 AGTAGCATAACAGCAATCGATCT 57.793 39.130 0.00 0.00 36.85 2.75
256 259 4.499037 AAAAGTTTCTCCCCGAAAATCG 57.501 40.909 0.00 0.00 42.87 3.34
389 433 0.457853 GCGACGAGTGCAATGAGGTA 60.458 55.000 0.00 0.00 0.00 3.08
396 440 1.080772 CCACTAGCGACGAGTGCAA 60.081 57.895 10.38 0.00 42.52 4.08
404 448 3.064207 TCAAACAATGTCCACTAGCGAC 58.936 45.455 4.03 4.03 0.00 5.19
406 450 3.067106 AGTCAAACAATGTCCACTAGCG 58.933 45.455 0.00 0.00 0.00 4.26
584 630 1.145325 CAGGGTATCCTCCGACCTACT 59.855 57.143 0.00 0.00 42.67 2.57
585 631 1.144503 TCAGGGTATCCTCCGACCTAC 59.855 57.143 0.00 0.00 42.67 3.18
586 632 1.526315 TCAGGGTATCCTCCGACCTA 58.474 55.000 0.00 0.00 42.67 3.08
587 633 0.635009 TTCAGGGTATCCTCCGACCT 59.365 55.000 0.00 0.00 42.67 3.85
626 679 3.075283 ACAAGGACCCAATTATGTGGTCA 59.925 43.478 13.19 0.00 43.30 4.02
627 680 3.443681 CACAAGGACCCAATTATGTGGTC 59.556 47.826 5.21 5.21 41.99 4.02
631 684 2.825532 GCACACAAGGACCCAATTATGT 59.174 45.455 0.00 0.00 0.00 2.29
633 686 3.356290 GAGCACACAAGGACCCAATTAT 58.644 45.455 0.00 0.00 0.00 1.28
634 687 2.790433 GAGCACACAAGGACCCAATTA 58.210 47.619 0.00 0.00 0.00 1.40
635 688 1.620822 GAGCACACAAGGACCCAATT 58.379 50.000 0.00 0.00 0.00 2.32
636 689 0.606401 CGAGCACACAAGGACCCAAT 60.606 55.000 0.00 0.00 0.00 3.16
637 690 1.227823 CGAGCACACAAGGACCCAA 60.228 57.895 0.00 0.00 0.00 4.12
638 691 2.425592 CGAGCACACAAGGACCCA 59.574 61.111 0.00 0.00 0.00 4.51
685 738 1.202330 CTCAAGGGCTCATCTGAGGT 58.798 55.000 9.15 0.00 42.29 3.85
711 764 2.361757 TCCAACATGCACTTTCAACAGG 59.638 45.455 0.00 0.00 0.00 4.00
896 1391 5.163066 TGGATGGGCTAGATCAATTGAATGA 60.163 40.000 13.09 0.00 0.00 2.57
913 1408 2.156917 CGTTGGATCATCATGGATGGG 58.843 52.381 6.39 0.00 40.15 4.00
921 1416 1.194218 TCTCTGCCGTTGGATCATCA 58.806 50.000 0.00 0.00 0.00 3.07
1015 1511 1.203250 GGGTTTTGGGAGGGAAATGGA 60.203 52.381 0.00 0.00 0.00 3.41
1106 1603 3.706373 GGCGGAGGTGAAGCAGGA 61.706 66.667 0.00 0.00 0.00 3.86
1471 1972 0.535335 AGAGCATAACCGGCGAGAAA 59.465 50.000 9.30 0.00 36.08 2.52
1495 1996 1.076485 ATGGGCCTTGTCAGCATCC 60.076 57.895 4.53 0.00 0.00 3.51
1501 2002 1.143838 CGATCGATGGGCCTTGTCA 59.856 57.895 10.26 0.00 0.00 3.58
1510 2011 1.095228 CCAAACCCACCGATCGATGG 61.095 60.000 22.53 22.53 35.59 3.51
1557 2058 3.640967 CAGACAGTTTCCCCCAAATTCAA 59.359 43.478 0.00 0.00 0.00 2.69
1570 2071 2.154462 CGGCTCCAAATCAGACAGTTT 58.846 47.619 0.00 0.00 0.00 2.66
1589 2090 4.671766 GCACCTCCTACAAGCAAATAAACG 60.672 45.833 0.00 0.00 0.00 3.60
1603 2104 3.892284 TGAAAAAGTTGTGCACCTCCTA 58.108 40.909 15.69 0.00 0.00 2.94
1626 2127 6.386654 TGTGACCAAGAACTTGAAGTTTTTC 58.613 36.000 12.37 0.00 42.93 2.29
1704 2205 1.970352 GCCCTCCTCCAGCTTCAGAG 61.970 65.000 0.00 0.00 0.00 3.35
1764 2271 0.972983 TCCTCTTCCTTCCTCTGCCG 60.973 60.000 0.00 0.00 0.00 5.69
1882 2389 9.073368 CAACAGATGATCAATTCAAACAGAATC 57.927 33.333 0.00 0.00 46.09 2.52
1954 2465 4.655963 AGCCTGTGAACTATGTCAAACAT 58.344 39.130 0.00 0.00 42.35 2.71
2137 2681 9.895138 TGTAGTCCTAACATTTTTCCTATTACC 57.105 33.333 0.00 0.00 0.00 2.85
2161 2705 4.844349 ATAGCAACCAAGATGTACCTGT 57.156 40.909 0.00 0.00 0.00 4.00
2207 2751 3.745799 TCGGTTGGCAAAGAACAGATAA 58.254 40.909 0.00 0.00 0.00 1.75
2210 2754 1.134220 ACTCGGTTGGCAAAGAACAGA 60.134 47.619 0.00 0.00 0.00 3.41
2212 2756 2.623878 TACTCGGTTGGCAAAGAACA 57.376 45.000 0.00 0.00 0.00 3.18
2379 2923 6.493189 TGGAATTTTAGCCATTTTATCCCC 57.507 37.500 0.00 0.00 0.00 4.81
2457 3039 5.460646 TCCTTTACTTAACTGGTCGTAACG 58.539 41.667 0.00 0.00 0.00 3.18
2463 3045 5.816258 GCACCTATCCTTTACTTAACTGGTC 59.184 44.000 0.00 0.00 0.00 4.02
2473 3055 5.346181 AGAACAGAGCACCTATCCTTTAC 57.654 43.478 0.00 0.00 0.00 2.01
2474 3056 5.955959 TGTAGAACAGAGCACCTATCCTTTA 59.044 40.000 0.00 0.00 0.00 1.85
2475 3057 4.777896 TGTAGAACAGAGCACCTATCCTTT 59.222 41.667 0.00 0.00 0.00 3.11
2476 3058 4.353777 TGTAGAACAGAGCACCTATCCTT 58.646 43.478 0.00 0.00 0.00 3.36
2477 3059 3.982516 TGTAGAACAGAGCACCTATCCT 58.017 45.455 0.00 0.00 0.00 3.24
2478 3060 4.737855 TTGTAGAACAGAGCACCTATCC 57.262 45.455 0.00 0.00 0.00 2.59
2479 3061 7.095439 GCAATATTGTAGAACAGAGCACCTATC 60.095 40.741 16.61 0.00 0.00 2.08
2480 3062 6.708054 GCAATATTGTAGAACAGAGCACCTAT 59.292 38.462 16.61 0.00 0.00 2.57
2481 3063 6.049149 GCAATATTGTAGAACAGAGCACCTA 58.951 40.000 16.61 0.00 0.00 3.08
2482 3064 4.878397 GCAATATTGTAGAACAGAGCACCT 59.122 41.667 16.61 0.00 0.00 4.00
2483 3065 4.260375 CGCAATATTGTAGAACAGAGCACC 60.260 45.833 16.61 0.00 0.00 5.01
2484 3066 4.330074 ACGCAATATTGTAGAACAGAGCAC 59.670 41.667 16.61 0.00 0.00 4.40
2485 3067 4.329801 CACGCAATATTGTAGAACAGAGCA 59.670 41.667 16.61 0.00 0.00 4.26
2486 3068 4.330074 ACACGCAATATTGTAGAACAGAGC 59.670 41.667 16.61 0.00 0.00 4.09
2487 3069 7.520119 TTACACGCAATATTGTAGAACAGAG 57.480 36.000 16.61 2.57 30.03 3.35
2488 3070 7.892778 TTTACACGCAATATTGTAGAACAGA 57.107 32.000 16.61 0.00 30.03 3.41
2489 3071 9.554724 AATTTTACACGCAATATTGTAGAACAG 57.445 29.630 16.61 3.64 28.35 3.16
2490 3072 9.900710 AAATTTTACACGCAATATTGTAGAACA 57.099 25.926 16.61 0.00 28.35 3.18
2572 3155 5.916318 AGCCAGAAAATCATGAAACAAACA 58.084 33.333 0.00 0.00 0.00 2.83
2806 3389 7.949690 TGCTAAAGTATCACTTAGGACAGTA 57.050 36.000 0.00 0.00 37.47 2.74
2807 3390 6.852420 TGCTAAAGTATCACTTAGGACAGT 57.148 37.500 0.00 0.00 37.47 3.55
2880 3463 2.357952 GGTAAACCGATTTCCCATGAGC 59.642 50.000 0.00 0.00 0.00 4.26
3059 3646 9.088512 CGGAACTATAGAATAATTGATAGTGGC 57.911 37.037 6.78 0.00 35.72 5.01
3069 3656 6.710744 CACAAAGGGCGGAACTATAGAATAAT 59.289 38.462 6.78 0.00 0.00 1.28
3264 3879 8.686334 ACCTGCAAACCATAATAGTTGATAAAG 58.314 33.333 0.00 0.00 0.00 1.85
3312 3927 3.189287 AGCAAAGTAAATTCTGGAGCACG 59.811 43.478 0.00 0.00 0.00 5.34
3798 4413 7.173218 CCTCAAACACTGAAGCTGAAAATAGTA 59.827 37.037 0.00 0.00 32.17 1.82
3946 4561 7.039270 AGAAGAAAACCACCAATGTTGTTTAC 58.961 34.615 0.00 0.00 38.86 2.01
3952 4567 4.285863 TGGAGAAGAAAACCACCAATGTT 58.714 39.130 0.00 0.00 0.00 2.71
4148 4861 5.106396 GCAGAAAAGTGAACAGCAGACATAT 60.106 40.000 0.00 0.00 0.00 1.78
4152 4865 2.600792 CGCAGAAAAGTGAACAGCAGAC 60.601 50.000 0.00 0.00 0.00 3.51
4437 5151 7.556275 CACCAGTTAGAATATAAAAAGGGAGCA 59.444 37.037 0.00 0.00 0.00 4.26
5014 5824 6.200665 GCTTGTAACAGAAATTCAACAATGCA 59.799 34.615 0.00 0.00 0.00 3.96
5018 5828 7.437862 GGAATGCTTGTAACAGAAATTCAACAA 59.562 33.333 0.00 0.21 0.00 2.83
5079 5889 1.285962 AGCATAGTCCAAAGGCCACAT 59.714 47.619 5.01 0.00 0.00 3.21
5109 5919 8.271458 ACAAAGGAAAAAGGGTAAATCAAACAT 58.729 29.630 0.00 0.00 0.00 2.71
5191 6001 6.006449 AGAAGCCACTAAGAAATTGTGTGAT 58.994 36.000 0.00 0.00 33.57 3.06
5245 6055 5.687166 ATGCCATCCTGAAACATGAAATT 57.313 34.783 0.00 0.00 0.00 1.82
5255 6065 3.282021 GTCAAGCTAATGCCATCCTGAA 58.718 45.455 0.00 0.00 40.80 3.02
5404 6215 7.389330 TGATTAATACACCGCAGAAGAAAAAGA 59.611 33.333 0.00 0.00 0.00 2.52
5405 6217 7.526608 TGATTAATACACCGCAGAAGAAAAAG 58.473 34.615 0.00 0.00 0.00 2.27
5455 6267 7.227512 GGATATGATGTAGCAGTAAAACAAGCT 59.772 37.037 0.00 0.00 40.92 3.74
5594 6406 8.879759 ACACAGTAAACTATTGATGGAAATACG 58.120 33.333 0.00 0.00 0.00 3.06
5654 6466 1.035139 ACACTTCAAGCAAGCCCAAG 58.965 50.000 0.00 0.00 35.17 3.61
5879 6718 2.233676 GTGGATTGGAGGCGGAATTTTT 59.766 45.455 0.00 0.00 0.00 1.94
5928 6767 1.746615 CTGGTTGGCATGGAGGTCG 60.747 63.158 0.00 0.00 0.00 4.79
5956 6795 7.871853 TGCCAATAGACTTGTTTTCTTCTAAC 58.128 34.615 0.00 0.00 0.00 2.34
6141 6980 0.535335 GGCATCAGTCGACCCACTAA 59.465 55.000 13.01 0.00 0.00 2.24
6147 6986 2.604046 AAGTATGGCATCAGTCGACC 57.396 50.000 13.01 0.00 0.00 4.79
6186 7026 2.755650 AGCACCACAAGTTTAGTCGAG 58.244 47.619 0.00 0.00 0.00 4.04
6189 7029 3.630312 TGGAAAGCACCACAAGTTTAGTC 59.370 43.478 0.00 0.00 34.77 2.59
6353 7220 4.142730 CCTTTATCAGCAGTGTTTCTCAGC 60.143 45.833 0.00 0.00 0.00 4.26
6375 7242 9.083080 CCAAAAATAACCGACAAATAGAAATCC 57.917 33.333 0.00 0.00 0.00 3.01
6398 7265 1.323412 AATGTAACAAGCCGTGCCAA 58.677 45.000 0.00 0.00 0.00 4.52
6406 7273 4.147479 GGTTACGCAACAAATGTAACAAGC 59.853 41.667 14.23 0.00 46.04 4.01
6526 7393 3.119245 AGCCATGTCACATTCTCAATTGC 60.119 43.478 0.00 0.00 0.00 3.56
6535 7402 4.079787 ACCATACCTTAGCCATGTCACATT 60.080 41.667 0.00 0.00 0.00 2.71
6564 7432 5.723295 CCATTTAATTCAGAGTTTGGGTGG 58.277 41.667 0.00 0.00 0.00 4.61
6565 7433 5.170748 GCCATTTAATTCAGAGTTTGGGTG 58.829 41.667 0.00 0.00 0.00 4.61
6567 7435 5.047092 AGTGCCATTTAATTCAGAGTTTGGG 60.047 40.000 0.00 0.00 0.00 4.12
6568 7436 5.865552 CAGTGCCATTTAATTCAGAGTTTGG 59.134 40.000 0.00 0.00 0.00 3.28
6570 7438 6.655078 ACAGTGCCATTTAATTCAGAGTTT 57.345 33.333 0.00 0.00 0.00 2.66
6599 7471 2.573462 ACAGAAGCAGGAATTAGGAGCA 59.427 45.455 0.00 0.00 0.00 4.26
6636 7508 4.290711 TCATGAATCCAACTGAAGCTCA 57.709 40.909 0.00 0.00 0.00 4.26
6652 7524 4.154015 CGTGGTTAGTTTGCTGATTCATGA 59.846 41.667 0.00 0.00 0.00 3.07
6740 7613 9.310449 TCTAGTACAGAATAGGGACCATAAATC 57.690 37.037 0.00 0.00 0.00 2.17
6790 7664 6.576662 ACAGAGGTCATAATAGGTCATACG 57.423 41.667 0.00 0.00 0.00 3.06
6875 7752 3.675348 TGGGGAAGCAATGAATCATCT 57.325 42.857 0.00 0.00 0.00 2.90
6888 7765 4.387598 TGCAAAACAAAATGATGGGGAAG 58.612 39.130 0.00 0.00 0.00 3.46
6914 7791 6.749139 AGAACCAAAATAAGCAGGAAACTTC 58.251 36.000 0.00 0.00 40.21 3.01
6938 7815 2.997315 CCAGGCGTCAGTCCAGGA 60.997 66.667 0.00 0.00 32.51 3.86
6939 7816 2.997315 TCCAGGCGTCAGTCCAGG 60.997 66.667 0.00 0.00 0.00 4.45
6940 7817 2.262915 GTCCAGGCGTCAGTCCAG 59.737 66.667 0.00 0.00 0.00 3.86
6942 7819 2.997897 AGGTCCAGGCGTCAGTCC 60.998 66.667 0.00 0.00 0.00 3.85
6943 7820 1.979693 AGAGGTCCAGGCGTCAGTC 60.980 63.158 0.00 0.00 0.00 3.51
6944 7821 2.118513 AGAGGTCCAGGCGTCAGT 59.881 61.111 0.00 0.00 0.00 3.41
6945 7822 1.536073 TTCAGAGGTCCAGGCGTCAG 61.536 60.000 0.00 0.00 0.00 3.51
6946 7823 1.118965 TTTCAGAGGTCCAGGCGTCA 61.119 55.000 0.00 0.00 0.00 4.35
6948 7825 1.371558 GTTTCAGAGGTCCAGGCGT 59.628 57.895 0.00 0.00 0.00 5.68
6951 7828 0.390472 GAGCGTTTCAGAGGTCCAGG 60.390 60.000 0.00 0.00 0.00 4.45
6952 7829 3.129792 GAGCGTTTCAGAGGTCCAG 57.870 57.895 0.00 0.00 0.00 3.86
6954 7831 4.600207 GGAGCGTTTCAGAGGTCC 57.400 61.111 0.00 0.00 45.94 4.46
6955 7832 1.363744 CATGGAGCGTTTCAGAGGTC 58.636 55.000 0.00 0.00 0.00 3.85
6956 7833 0.036010 CCATGGAGCGTTTCAGAGGT 60.036 55.000 5.56 0.00 0.00 3.85
6957 7834 0.036010 ACCATGGAGCGTTTCAGAGG 60.036 55.000 21.47 0.95 0.00 3.69
6958 7835 1.081892 CACCATGGAGCGTTTCAGAG 58.918 55.000 21.47 0.00 0.00 3.35
6959 7836 0.321564 CCACCATGGAGCGTTTCAGA 60.322 55.000 21.47 0.00 40.96 3.27
6960 7837 1.926511 GCCACCATGGAGCGTTTCAG 61.927 60.000 21.47 0.00 40.96 3.02
6961 7838 1.971167 GCCACCATGGAGCGTTTCA 60.971 57.895 21.47 0.00 40.96 2.69
6962 7839 2.700773 GGCCACCATGGAGCGTTTC 61.701 63.158 21.47 4.37 40.96 2.78
6963 7840 2.676471 GGCCACCATGGAGCGTTT 60.676 61.111 21.47 0.00 40.96 3.60
6964 7841 3.925630 CTGGCCACCATGGAGCGTT 62.926 63.158 21.47 0.00 40.96 4.84
6965 7842 4.415150 CTGGCCACCATGGAGCGT 62.415 66.667 21.47 0.00 40.96 5.07
6966 7843 4.100084 TCTGGCCACCATGGAGCG 62.100 66.667 21.47 9.17 40.96 5.03
6967 7844 2.439156 GTCTGGCCACCATGGAGC 60.439 66.667 21.47 20.16 40.96 4.70
6968 7845 1.222936 GAGTCTGGCCACCATGGAG 59.777 63.158 21.47 11.19 40.96 3.86
6970 7847 2.273449 GGAGTCTGGCCACCATGG 59.727 66.667 11.19 11.19 41.55 3.66
6971 7848 2.273449 GGGAGTCTGGCCACCATG 59.727 66.667 0.00 0.00 30.82 3.66
6972 7849 3.402681 CGGGAGTCTGGCCACCAT 61.403 66.667 0.00 0.00 30.82 3.55
6980 7857 0.612174 TTCAGAGGTCCGGGAGTCTG 60.612 60.000 22.39 22.39 38.23 3.51
6981 7858 0.114560 TTTCAGAGGTCCGGGAGTCT 59.885 55.000 0.00 0.00 0.00 3.24
6985 7867 2.939261 GCGTTTCAGAGGTCCGGGA 61.939 63.158 0.00 0.00 0.00 5.14
6988 7870 2.383527 GCAGCGTTTCAGAGGTCCG 61.384 63.158 0.00 0.00 0.00 4.79
7003 7885 0.463204 ATCGAGACCAGACCATGCAG 59.537 55.000 0.00 0.00 0.00 4.41
7005 7887 1.000283 CCTATCGAGACCAGACCATGC 60.000 57.143 0.00 0.00 0.00 4.06
7034 7916 0.772124 AAAGAGGGCCTGGAGTTCCA 60.772 55.000 12.95 0.18 45.30 3.53
7052 7934 1.631405 CCTGGAGTCCCATGCAAAAA 58.369 50.000 6.74 0.00 42.59 1.94
7053 7935 3.362040 CCTGGAGTCCCATGCAAAA 57.638 52.632 6.74 0.00 42.59 2.44
7058 7940 2.693864 AGGGCCTGGAGTCCCATG 60.694 66.667 4.50 0.00 45.07 3.66
7059 7941 2.693864 CAGGGCCTGGAGTCCCAT 60.694 66.667 26.34 0.00 45.07 4.00
7062 7944 3.334054 AAGCAGGGCCTGGAGTCC 61.334 66.667 33.43 17.13 31.21 3.85
7063 7945 1.919600 ATCAAGCAGGGCCTGGAGTC 61.920 60.000 33.43 17.51 31.21 3.36
7064 7946 0.621571 TATCAAGCAGGGCCTGGAGT 60.622 55.000 33.43 14.54 31.21 3.85
7065 7947 0.179034 GTATCAAGCAGGGCCTGGAG 60.179 60.000 33.43 10.52 31.21 3.86
7066 7948 0.913934 TGTATCAAGCAGGGCCTGGA 60.914 55.000 33.43 22.61 31.21 3.86
7067 7949 0.749454 GTGTATCAAGCAGGGCCTGG 60.749 60.000 33.43 18.03 31.21 4.45
7068 7950 1.091771 CGTGTATCAAGCAGGGCCTG 61.092 60.000 29.44 29.44 34.12 4.85
7069 7951 1.221840 CGTGTATCAAGCAGGGCCT 59.778 57.895 0.00 0.00 0.00 5.19
7070 7952 0.811616 CTCGTGTATCAAGCAGGGCC 60.812 60.000 0.00 0.00 0.00 5.80
7071 7953 0.175760 TCTCGTGTATCAAGCAGGGC 59.824 55.000 0.00 0.00 0.00 5.19
7072 7954 2.672961 TTCTCGTGTATCAAGCAGGG 57.327 50.000 0.00 0.00 0.00 4.45
7073 7955 3.372206 CCTTTTCTCGTGTATCAAGCAGG 59.628 47.826 0.00 0.00 0.00 4.85
7074 7956 4.092091 GTCCTTTTCTCGTGTATCAAGCAG 59.908 45.833 0.00 0.00 0.00 4.24
7075 7957 3.994392 GTCCTTTTCTCGTGTATCAAGCA 59.006 43.478 0.00 0.00 0.00 3.91
7076 7958 3.994392 TGTCCTTTTCTCGTGTATCAAGC 59.006 43.478 0.00 0.00 0.00 4.01
7077 7959 6.183360 GGAATGTCCTTTTCTCGTGTATCAAG 60.183 42.308 0.00 0.00 32.53 3.02
7111 7995 5.003804 GGAGTGTGTGAATTGTAACAGGAT 58.996 41.667 0.00 0.00 0.00 3.24
7129 8014 6.127758 TCAATTAATTTGGATTGGACGGAGTG 60.128 38.462 0.00 0.00 36.99 3.51
7150 8036 5.200483 TGCTCCCTCCGATTTAAATTCAAT 58.800 37.500 1.43 0.00 0.00 2.57
7152 8038 4.229304 TGCTCCCTCCGATTTAAATTCA 57.771 40.909 1.43 0.00 0.00 2.57
7153 8039 5.576447 TTTGCTCCCTCCGATTTAAATTC 57.424 39.130 1.43 0.00 0.00 2.17
7154 8040 6.381133 AGAATTTGCTCCCTCCGATTTAAATT 59.619 34.615 1.43 0.00 31.45 1.82
7155 8041 5.893824 AGAATTTGCTCCCTCCGATTTAAAT 59.106 36.000 0.00 0.00 0.00 1.40
7156 8042 5.261216 AGAATTTGCTCCCTCCGATTTAAA 58.739 37.500 0.00 0.00 0.00 1.52
7158 8044 4.503714 AGAATTTGCTCCCTCCGATTTA 57.496 40.909 0.00 0.00 0.00 1.40
7159 8045 3.372440 AGAATTTGCTCCCTCCGATTT 57.628 42.857 0.00 0.00 0.00 2.17
7160 8046 3.372440 AAGAATTTGCTCCCTCCGATT 57.628 42.857 0.00 0.00 0.00 3.34
7163 8049 3.942130 AAAAAGAATTTGCTCCCTCCG 57.058 42.857 0.00 0.00 39.02 4.63
7185 8215 1.052617 GAGTTCCTGGCCTCTATCCC 58.947 60.000 3.32 0.00 0.00 3.85
7213 8301 1.766461 CCGGCAGGGTCCTAGGAAT 60.766 63.158 14.65 0.00 0.00 3.01
7217 8305 3.155167 GGTCCGGCAGGGTCCTAG 61.155 72.222 2.05 0.00 38.33 3.02
7275 11465 0.455633 CGAACGGAGGGAGTACAACG 60.456 60.000 0.00 0.00 0.00 4.10
7276 11466 0.735287 GCGAACGGAGGGAGTACAAC 60.735 60.000 0.00 0.00 0.00 3.32
7277 11467 0.896940 AGCGAACGGAGGGAGTACAA 60.897 55.000 0.00 0.00 0.00 2.41
7278 11468 0.896940 AAGCGAACGGAGGGAGTACA 60.897 55.000 0.00 0.00 0.00 2.90
7279 11469 0.245813 AAAGCGAACGGAGGGAGTAC 59.754 55.000 0.00 0.00 0.00 2.73
7281 11471 0.602905 CAAAAGCGAACGGAGGGAGT 60.603 55.000 0.00 0.00 0.00 3.85
7282 11472 0.602905 ACAAAAGCGAACGGAGGGAG 60.603 55.000 0.00 0.00 0.00 4.30
7284 11474 1.463444 CTTACAAAAGCGAACGGAGGG 59.537 52.381 0.00 0.00 0.00 4.30
7285 11475 2.157085 GTCTTACAAAAGCGAACGGAGG 59.843 50.000 0.00 0.00 32.36 4.30
7286 11476 2.160013 CGTCTTACAAAAGCGAACGGAG 60.160 50.000 0.00 0.00 35.57 4.63
7287 11477 1.788308 CGTCTTACAAAAGCGAACGGA 59.212 47.619 0.00 0.00 35.57 4.69
7288 11478 1.523934 ACGTCTTACAAAAGCGAACGG 59.476 47.619 0.00 0.00 35.75 4.44
7289 11479 2.916735 ACGTCTTACAAAAGCGAACG 57.083 45.000 8.28 0.00 36.83 3.95
7290 11480 6.352805 GTCTAAAACGTCTTACAAAAGCGAAC 59.647 38.462 0.00 0.00 36.44 3.95
7291 11481 6.035866 TGTCTAAAACGTCTTACAAAAGCGAA 59.964 34.615 0.00 0.00 36.44 4.70
7292 11482 5.519566 TGTCTAAAACGTCTTACAAAAGCGA 59.480 36.000 0.00 0.00 36.44 4.93
7293 11483 5.730269 TGTCTAAAACGTCTTACAAAAGCG 58.270 37.500 0.00 0.00 37.86 4.68
7294 11484 9.821662 ATATTGTCTAAAACGTCTTACAAAAGC 57.178 29.630 0.00 0.00 31.33 3.51
7323 11513 9.868277 TTGATACAACTGAAATTGAACTGTTTT 57.132 25.926 0.00 0.00 33.57 2.43
7324 11514 9.868277 TTTGATACAACTGAAATTGAACTGTTT 57.132 25.926 0.00 0.00 33.57 2.83
7326 11516 9.467258 CATTTGATACAACTGAAATTGAACTGT 57.533 29.630 0.00 0.00 33.57 3.55
7327 11517 9.681692 TCATTTGATACAACTGAAATTGAACTG 57.318 29.630 0.00 0.00 33.57 3.16
7382 11572 9.748708 CCTTTCTTCATTTTGTAAGTCATTTGA 57.251 29.630 0.00 0.00 0.00 2.69
7383 11573 8.981647 CCCTTTCTTCATTTTGTAAGTCATTTG 58.018 33.333 0.00 0.00 0.00 2.32
7384 11574 8.923270 TCCCTTTCTTCATTTTGTAAGTCATTT 58.077 29.630 0.00 0.00 0.00 2.32
7385 11575 8.477419 TCCCTTTCTTCATTTTGTAAGTCATT 57.523 30.769 0.00 0.00 0.00 2.57
7386 11576 7.725844 ACTCCCTTTCTTCATTTTGTAAGTCAT 59.274 33.333 0.00 0.00 0.00 3.06
7387 11577 7.060421 ACTCCCTTTCTTCATTTTGTAAGTCA 58.940 34.615 0.00 0.00 0.00 3.41
7388 11578 7.511959 ACTCCCTTTCTTCATTTTGTAAGTC 57.488 36.000 0.00 0.00 0.00 3.01
7389 11579 8.990163 TTACTCCCTTTCTTCATTTTGTAAGT 57.010 30.769 0.00 0.00 0.00 2.24
7390 11580 9.284968 TCTTACTCCCTTTCTTCATTTTGTAAG 57.715 33.333 0.00 0.00 36.32 2.34
7391 11581 9.284968 CTCTTACTCCCTTTCTTCATTTTGTAA 57.715 33.333 0.00 0.00 0.00 2.41
7392 11582 8.656806 TCTCTTACTCCCTTTCTTCATTTTGTA 58.343 33.333 0.00 0.00 0.00 2.41
7393 11583 7.518188 TCTCTTACTCCCTTTCTTCATTTTGT 58.482 34.615 0.00 0.00 0.00 2.83
7394 11584 7.986085 TCTCTTACTCCCTTTCTTCATTTTG 57.014 36.000 0.00 0.00 0.00 2.44
7395 11585 8.996651 TTTCTCTTACTCCCTTTCTTCATTTT 57.003 30.769 0.00 0.00 0.00 1.82
7397 11587 9.674068 GTATTTCTCTTACTCCCTTTCTTCATT 57.326 33.333 0.00 0.00 0.00 2.57
7398 11588 8.268605 GGTATTTCTCTTACTCCCTTTCTTCAT 58.731 37.037 0.00 0.00 0.00 2.57
7399 11589 7.236847 TGGTATTTCTCTTACTCCCTTTCTTCA 59.763 37.037 0.00 0.00 0.00 3.02
7400 11590 7.621796 TGGTATTTCTCTTACTCCCTTTCTTC 58.378 38.462 0.00 0.00 0.00 2.87
7401 11591 7.569599 TGGTATTTCTCTTACTCCCTTTCTT 57.430 36.000 0.00 0.00 0.00 2.52
7402 11592 7.569599 TTGGTATTTCTCTTACTCCCTTTCT 57.430 36.000 0.00 0.00 0.00 2.52
7403 11593 8.809468 AATTGGTATTTCTCTTACTCCCTTTC 57.191 34.615 0.00 0.00 0.00 2.62
7404 11594 7.834681 GGAATTGGTATTTCTCTTACTCCCTTT 59.165 37.037 0.00 0.00 0.00 3.11
7405 11595 7.347252 GGAATTGGTATTTCTCTTACTCCCTT 58.653 38.462 0.00 0.00 0.00 3.95
7406 11596 6.408206 CGGAATTGGTATTTCTCTTACTCCCT 60.408 42.308 0.00 0.00 0.00 4.20
7407 11597 5.758784 CGGAATTGGTATTTCTCTTACTCCC 59.241 44.000 0.00 0.00 0.00 4.30
7408 11598 6.579865 TCGGAATTGGTATTTCTCTTACTCC 58.420 40.000 0.00 0.00 0.00 3.85
7409 11599 7.385478 GGATCGGAATTGGTATTTCTCTTACTC 59.615 40.741 0.00 0.00 0.00 2.59
7410 11600 7.217906 GGATCGGAATTGGTATTTCTCTTACT 58.782 38.462 0.00 0.00 0.00 2.24
7417 11607 4.100279 AGGGGATCGGAATTGGTATTTC 57.900 45.455 0.00 0.00 0.00 2.17
7427 11617 2.104792 CAGCAGAAATAGGGGATCGGAA 59.895 50.000 0.00 0.00 0.00 4.30
7428 11618 1.694150 CAGCAGAAATAGGGGATCGGA 59.306 52.381 0.00 0.00 0.00 4.55
7429 11619 1.271054 CCAGCAGAAATAGGGGATCGG 60.271 57.143 0.00 0.00 0.00 4.18
7430 11620 1.694150 TCCAGCAGAAATAGGGGATCG 59.306 52.381 0.00 0.00 0.00 3.69
7464 11654 3.941483 CTGGAATTGCAAGTTCTCCGTAT 59.059 43.478 6.75 0.00 0.00 3.06
7481 11671 3.102204 TGAGATGAGATGCTGTCTGGAA 58.898 45.455 0.00 0.00 37.29 3.53
7509 11699 3.912496 ATGCACCTGTAGCTAATGTGA 57.088 42.857 17.91 7.49 0.00 3.58
7512 11702 7.728847 TGTTATTATGCACCTGTAGCTAATG 57.271 36.000 0.00 0.00 0.00 1.90
7513 11703 8.746052 TTTGTTATTATGCACCTGTAGCTAAT 57.254 30.769 0.00 0.00 0.00 1.73
7514 11704 8.746052 ATTTGTTATTATGCACCTGTAGCTAA 57.254 30.769 0.00 0.00 0.00 3.09
7515 11705 7.990314 TGATTTGTTATTATGCACCTGTAGCTA 59.010 33.333 0.00 0.00 0.00 3.32
7517 11707 7.026631 TGATTTGTTATTATGCACCTGTAGC 57.973 36.000 0.00 0.00 0.00 3.58
7518 11708 8.839343 TGATGATTTGTTATTATGCACCTGTAG 58.161 33.333 0.00 0.00 0.00 2.74
7561 11758 1.956629 TTAGCGGCTGAGTACCTGGC 61.957 60.000 13.86 0.00 36.21 4.85
7682 11881 7.859325 TTATAGATGATGATGGTGATGCATG 57.141 36.000 2.46 0.00 0.00 4.06
7683 11882 7.065443 CGTTTATAGATGATGATGGTGATGCAT 59.935 37.037 0.00 0.00 0.00 3.96
7684 11883 6.369615 CGTTTATAGATGATGATGGTGATGCA 59.630 38.462 0.00 0.00 0.00 3.96
7685 11884 6.674037 GCGTTTATAGATGATGATGGTGATGC 60.674 42.308 0.00 0.00 0.00 3.91
7818 12029 3.612247 CTCCCTGGGGCTTGACGTG 62.612 68.421 14.00 0.00 34.68 4.49
7824 12035 0.326238 TATTCGTCTCCCTGGGGCTT 60.326 55.000 14.00 0.00 34.68 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.