Multiple sequence alignment - TraesCS1D01G328900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G328900 chr1D 100.000 2714 0 0 1 2714 420380946 420378233 0.000000e+00 5012.0
1 TraesCS1D01G328900 chr1D 82.801 1692 156 80 389 2020 420239319 420237703 0.000000e+00 1387.0
2 TraesCS1D01G328900 chr1D 83.495 309 43 3 2413 2714 280043835 280043528 5.720000e-72 281.0
3 TraesCS1D01G328900 chr1B 89.919 1845 109 36 249 2064 568007325 568005529 0.000000e+00 2305.0
4 TraesCS1D01G328900 chr1B 87.032 1095 110 19 955 2030 567979873 567978792 0.000000e+00 1206.0
5 TraesCS1D01G328900 chr1B 81.119 572 55 21 2037 2586 568003265 568002725 2.520000e-110 409.0
6 TraesCS1D01G328900 chr1B 79.070 129 12 12 739 854 567980100 567979974 1.040000e-09 75.0
7 TraesCS1D01G328900 chr1B 100.000 30 0 0 206 235 591120198 591120169 3.780000e-04 56.5
8 TraesCS1D01G328900 chr1A 92.816 1392 74 15 696 2069 516740640 516739257 0.000000e+00 1993.0
9 TraesCS1D01G328900 chr1A 84.655 1349 131 41 742 2030 516727636 516726304 0.000000e+00 1275.0
10 TraesCS1D01G328900 chr1A 92.610 433 18 7 274 698 516741263 516740837 6.420000e-171 610.0
11 TraesCS1D01G328900 chr1A 81.388 634 100 7 2068 2686 568128329 568128959 4.030000e-138 501.0
12 TraesCS1D01G328900 chr4D 83.929 672 93 10 2058 2714 12710493 12711164 1.770000e-176 628.0
13 TraesCS1D01G328900 chr4D 80.619 614 87 15 2119 2714 297072585 297071986 1.920000e-121 446.0
14 TraesCS1D01G328900 chr5A 83.686 662 91 5 2069 2714 22613098 22612438 2.310000e-170 608.0
15 TraesCS1D01G328900 chr3D 83.234 674 88 12 2064 2714 516072834 516073505 1.800000e-166 595.0
16 TraesCS1D01G328900 chr3D 80.087 462 71 10 1039 1491 506061857 506061408 9.370000e-85 324.0
17 TraesCS1D01G328900 chr3D 81.092 238 24 11 2495 2714 294044707 294044941 1.290000e-38 171.0
18 TraesCS1D01G328900 chr3D 77.519 258 41 15 943 1188 506109533 506109281 3.640000e-29 139.0
19 TraesCS1D01G328900 chr5D 82.701 659 99 6 2068 2714 433007543 433006888 3.030000e-159 571.0
20 TraesCS1D01G328900 chr6D 82.317 656 100 3 2069 2708 343135671 343136326 3.050000e-154 555.0
21 TraesCS1D01G328900 chr7D 82.212 669 91 11 2066 2714 259299598 259300258 3.950000e-153 551.0
22 TraesCS1D01G328900 chr7D 81.423 506 76 7 2226 2714 258190120 258190624 5.440000e-107 398.0
23 TraesCS1D01G328900 chr2B 82.553 619 98 4 2105 2714 54522852 54523469 1.110000e-148 536.0
24 TraesCS1D01G328900 chr6A 81.690 639 96 9 2068 2688 504160758 504161393 1.860000e-141 512.0
25 TraesCS1D01G328900 chr3B 80.130 463 69 13 1039 1491 667779324 667778875 9.370000e-85 324.0
26 TraesCS1D01G328900 chr6B 79.947 379 61 5 2351 2714 145372374 145372752 5.760000e-67 265.0
27 TraesCS1D01G328900 chr6B 79.790 381 58 9 2351 2714 145366182 145366560 2.680000e-65 259.0
28 TraesCS1D01G328900 chr7B 76.225 408 77 17 1120 1514 632331228 632331628 5.930000e-47 198.0
29 TraesCS1D01G328900 chr7A 74.257 505 114 11 1120 1613 663494669 663495168 5.930000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G328900 chr1D 420378233 420380946 2713 True 5012.0 5012 100.000 1 2714 1 chr1D.!!$R3 2713
1 TraesCS1D01G328900 chr1D 420237703 420239319 1616 True 1387.0 1387 82.801 389 2020 1 chr1D.!!$R2 1631
2 TraesCS1D01G328900 chr1B 568002725 568007325 4600 True 1357.0 2305 85.519 249 2586 2 chr1B.!!$R3 2337
3 TraesCS1D01G328900 chr1B 567978792 567980100 1308 True 640.5 1206 83.051 739 2030 2 chr1B.!!$R2 1291
4 TraesCS1D01G328900 chr1A 516739257 516741263 2006 True 1301.5 1993 92.713 274 2069 2 chr1A.!!$R2 1795
5 TraesCS1D01G328900 chr1A 516726304 516727636 1332 True 1275.0 1275 84.655 742 2030 1 chr1A.!!$R1 1288
6 TraesCS1D01G328900 chr1A 568128329 568128959 630 False 501.0 501 81.388 2068 2686 1 chr1A.!!$F1 618
7 TraesCS1D01G328900 chr4D 12710493 12711164 671 False 628.0 628 83.929 2058 2714 1 chr4D.!!$F1 656
8 TraesCS1D01G328900 chr4D 297071986 297072585 599 True 446.0 446 80.619 2119 2714 1 chr4D.!!$R1 595
9 TraesCS1D01G328900 chr5A 22612438 22613098 660 True 608.0 608 83.686 2069 2714 1 chr5A.!!$R1 645
10 TraesCS1D01G328900 chr3D 516072834 516073505 671 False 595.0 595 83.234 2064 2714 1 chr3D.!!$F2 650
11 TraesCS1D01G328900 chr5D 433006888 433007543 655 True 571.0 571 82.701 2068 2714 1 chr5D.!!$R1 646
12 TraesCS1D01G328900 chr6D 343135671 343136326 655 False 555.0 555 82.317 2069 2708 1 chr6D.!!$F1 639
13 TraesCS1D01G328900 chr7D 259299598 259300258 660 False 551.0 551 82.212 2066 2714 1 chr7D.!!$F2 648
14 TraesCS1D01G328900 chr7D 258190120 258190624 504 False 398.0 398 81.423 2226 2714 1 chr7D.!!$F1 488
15 TraesCS1D01G328900 chr2B 54522852 54523469 617 False 536.0 536 82.553 2105 2714 1 chr2B.!!$F1 609
16 TraesCS1D01G328900 chr6A 504160758 504161393 635 False 512.0 512 81.690 2068 2688 1 chr6A.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.036952 CACCCAATGACGACTCTGCT 60.037 55.0 0.00 0.00 0.00 4.24 F
1062 1375 0.183492 GATGAGCACCATGGCCCTTA 59.817 55.0 13.04 5.37 35.17 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1277 1590 1.827789 GCAGCAGTGGTTGTTGGGA 60.828 57.895 0.0 0.0 38.34 4.37 R
2627 5321 0.320374 CTCCAACGTAAGCCTGTCCA 59.680 55.000 0.0 0.0 45.62 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.774890 TGTTGAAACATGCATTTAATTGCTAT 57.225 26.923 19.83 10.94 37.47 2.97
53 54 8.657729 TGTTGAAACATGCATTTAATTGCTATG 58.342 29.630 19.83 20.33 37.47 2.23
54 55 8.658609 GTTGAAACATGCATTTAATTGCTATGT 58.341 29.630 21.46 21.46 43.18 2.29
55 56 8.410030 TGAAACATGCATTTAATTGCTATGTC 57.590 30.769 24.24 18.35 43.18 3.06
56 57 8.252417 TGAAACATGCATTTAATTGCTATGTCT 58.748 29.630 24.24 17.91 43.18 3.41
57 58 9.734620 GAAACATGCATTTAATTGCTATGTCTA 57.265 29.630 24.24 8.70 43.18 2.59
89 90 9.709495 AGCTTAAATTGTCATTGCTTTTTATGA 57.291 25.926 0.00 0.00 0.00 2.15
94 95 9.545105 AAATTGTCATTGCTTTTTATGAAGACA 57.455 25.926 0.00 0.00 32.94 3.41
95 96 9.545105 AATTGTCATTGCTTTTTATGAAGACAA 57.455 25.926 0.00 0.00 44.40 3.18
96 97 7.928908 TGTCATTGCTTTTTATGAAGACAAC 57.071 32.000 0.00 0.00 32.94 3.32
97 98 6.636447 TGTCATTGCTTTTTATGAAGACAACG 59.364 34.615 0.00 0.00 32.94 4.10
98 99 6.855914 GTCATTGCTTTTTATGAAGACAACGA 59.144 34.615 0.00 0.00 32.94 3.85
99 100 6.855914 TCATTGCTTTTTATGAAGACAACGAC 59.144 34.615 0.00 0.00 30.95 4.34
100 101 5.743026 TGCTTTTTATGAAGACAACGACA 57.257 34.783 0.00 0.00 0.00 4.35
101 102 6.125327 TGCTTTTTATGAAGACAACGACAA 57.875 33.333 0.00 0.00 0.00 3.18
102 103 6.556212 TGCTTTTTATGAAGACAACGACAAA 58.444 32.000 0.00 0.00 0.00 2.83
103 104 7.030165 TGCTTTTTATGAAGACAACGACAAAA 58.970 30.769 0.00 0.00 0.00 2.44
104 105 7.542477 TGCTTTTTATGAAGACAACGACAAAAA 59.458 29.630 0.00 0.00 0.00 1.94
136 137 9.813446 ATCAAATAAATGAAAAGATCTGAAGGC 57.187 29.630 0.00 0.00 32.06 4.35
137 138 8.253113 TCAAATAAATGAAAAGATCTGAAGGCC 58.747 33.333 0.00 0.00 0.00 5.19
138 139 4.708726 AAATGAAAAGATCTGAAGGCCG 57.291 40.909 0.00 0.00 0.00 6.13
139 140 1.453155 TGAAAAGATCTGAAGGCCGC 58.547 50.000 0.00 0.00 0.00 6.53
140 141 1.271325 TGAAAAGATCTGAAGGCCGCA 60.271 47.619 0.00 0.00 0.00 5.69
141 142 2.019984 GAAAAGATCTGAAGGCCGCAT 58.980 47.619 0.00 0.00 0.00 4.73
142 143 2.134789 AAAGATCTGAAGGCCGCATT 57.865 45.000 0.00 0.00 0.00 3.56
143 144 3.281727 AAAGATCTGAAGGCCGCATTA 57.718 42.857 0.00 0.00 0.00 1.90
144 145 3.498774 AAGATCTGAAGGCCGCATTAT 57.501 42.857 0.00 0.00 0.00 1.28
145 146 2.775890 AGATCTGAAGGCCGCATTATG 58.224 47.619 0.00 0.00 0.00 1.90
146 147 1.808945 GATCTGAAGGCCGCATTATGG 59.191 52.381 0.00 0.00 0.00 2.74
147 148 0.546122 TCTGAAGGCCGCATTATGGT 59.454 50.000 0.00 0.00 0.00 3.55
148 149 0.664761 CTGAAGGCCGCATTATGGTG 59.335 55.000 0.00 0.00 0.00 4.17
149 150 0.254462 TGAAGGCCGCATTATGGTGA 59.746 50.000 0.00 0.00 0.00 4.02
150 151 0.663153 GAAGGCCGCATTATGGTGAC 59.337 55.000 0.00 0.00 0.00 3.67
151 152 0.255890 AAGGCCGCATTATGGTGACT 59.744 50.000 0.00 0.00 0.00 3.41
152 153 0.179045 AGGCCGCATTATGGTGACTC 60.179 55.000 0.00 0.00 0.00 3.36
153 154 0.179045 GGCCGCATTATGGTGACTCT 60.179 55.000 0.00 0.00 0.00 3.24
154 155 0.940126 GCCGCATTATGGTGACTCTG 59.060 55.000 0.00 0.00 0.00 3.35
155 156 1.743772 GCCGCATTATGGTGACTCTGT 60.744 52.381 0.00 0.00 0.00 3.41
156 157 1.935873 CCGCATTATGGTGACTCTGTG 59.064 52.381 0.00 0.00 0.00 3.66
157 158 2.621338 CGCATTATGGTGACTCTGTGT 58.379 47.619 0.00 0.00 0.00 3.72
158 159 3.002791 CGCATTATGGTGACTCTGTGTT 58.997 45.455 0.00 0.00 0.00 3.32
159 160 3.436704 CGCATTATGGTGACTCTGTGTTT 59.563 43.478 0.00 0.00 0.00 2.83
160 161 4.669965 CGCATTATGGTGACTCTGTGTTTG 60.670 45.833 0.00 0.00 0.00 2.93
161 162 4.726416 CATTATGGTGACTCTGTGTTTGC 58.274 43.478 0.00 0.00 0.00 3.68
162 163 1.609208 ATGGTGACTCTGTGTTTGCC 58.391 50.000 0.00 0.00 0.00 4.52
163 164 0.465460 TGGTGACTCTGTGTTTGCCC 60.465 55.000 0.00 0.00 0.00 5.36
164 165 0.465460 GGTGACTCTGTGTTTGCCCA 60.465 55.000 0.00 0.00 0.00 5.36
165 166 0.663153 GTGACTCTGTGTTTGCCCAC 59.337 55.000 0.00 0.00 35.86 4.61
166 167 0.254462 TGACTCTGTGTTTGCCCACA 59.746 50.000 0.00 0.00 42.81 4.17
167 168 0.663153 GACTCTGTGTTTGCCCACAC 59.337 55.000 8.27 8.27 46.32 3.82
168 169 0.751643 ACTCTGTGTTTGCCCACACC 60.752 55.000 11.83 0.00 45.67 4.16
169 170 0.466189 CTCTGTGTTTGCCCACACCT 60.466 55.000 11.83 0.00 45.67 4.00
170 171 0.751277 TCTGTGTTTGCCCACACCTG 60.751 55.000 11.83 6.27 45.67 4.00
171 172 2.354074 CTGTGTTTGCCCACACCTGC 62.354 60.000 11.83 0.00 45.67 4.85
172 173 2.837291 TGTTTGCCCACACCTGCC 60.837 61.111 0.00 0.00 0.00 4.85
173 174 2.837291 GTTTGCCCACACCTGCCA 60.837 61.111 0.00 0.00 0.00 4.92
174 175 2.837291 TTTGCCCACACCTGCCAC 60.837 61.111 0.00 0.00 0.00 5.01
179 180 3.941188 CCACACCTGCCACGACCT 61.941 66.667 0.00 0.00 0.00 3.85
180 181 2.357517 CACACCTGCCACGACCTC 60.358 66.667 0.00 0.00 0.00 3.85
181 182 2.524394 ACACCTGCCACGACCTCT 60.524 61.111 0.00 0.00 0.00 3.69
182 183 1.228769 ACACCTGCCACGACCTCTA 60.229 57.895 0.00 0.00 0.00 2.43
183 184 0.614979 ACACCTGCCACGACCTCTAT 60.615 55.000 0.00 0.00 0.00 1.98
184 185 0.179100 CACCTGCCACGACCTCTATG 60.179 60.000 0.00 0.00 0.00 2.23
185 186 0.614979 ACCTGCCACGACCTCTATGT 60.615 55.000 0.00 0.00 0.00 2.29
186 187 0.179100 CCTGCCACGACCTCTATGTG 60.179 60.000 0.00 0.00 0.00 3.21
187 188 0.817654 CTGCCACGACCTCTATGTGA 59.182 55.000 0.00 0.00 35.66 3.58
188 189 0.530744 TGCCACGACCTCTATGTGAC 59.469 55.000 0.00 0.00 35.66 3.67
189 190 0.525668 GCCACGACCTCTATGTGACG 60.526 60.000 0.00 0.00 35.66 4.35
190 191 0.100682 CCACGACCTCTATGTGACGG 59.899 60.000 0.00 0.00 35.66 4.79
191 192 1.092348 CACGACCTCTATGTGACGGA 58.908 55.000 0.00 0.00 35.66 4.69
192 193 1.676529 CACGACCTCTATGTGACGGAT 59.323 52.381 0.00 0.00 35.66 4.18
193 194 1.676529 ACGACCTCTATGTGACGGATG 59.323 52.381 0.00 0.00 0.00 3.51
194 195 1.947456 CGACCTCTATGTGACGGATGA 59.053 52.381 0.00 0.00 0.00 2.92
195 196 2.287069 CGACCTCTATGTGACGGATGAC 60.287 54.545 0.00 0.00 0.00 3.06
208 209 2.620251 GGATGACGATCACCCAATGA 57.380 50.000 0.00 0.00 43.13 2.57
209 210 2.213499 GGATGACGATCACCCAATGAC 58.787 52.381 0.00 0.00 41.24 3.06
210 211 1.860950 GATGACGATCACCCAATGACG 59.139 52.381 0.00 0.00 41.24 4.35
211 212 0.892063 TGACGATCACCCAATGACGA 59.108 50.000 0.00 0.00 41.24 4.20
212 213 1.278238 GACGATCACCCAATGACGAC 58.722 55.000 0.00 0.00 41.24 4.34
213 214 0.895530 ACGATCACCCAATGACGACT 59.104 50.000 0.00 0.00 41.24 4.18
214 215 1.135083 ACGATCACCCAATGACGACTC 60.135 52.381 0.00 0.00 41.24 3.36
215 216 1.135139 CGATCACCCAATGACGACTCT 59.865 52.381 0.00 0.00 41.24 3.24
216 217 2.544685 GATCACCCAATGACGACTCTG 58.455 52.381 0.00 0.00 41.24 3.35
217 218 0.037326 TCACCCAATGACGACTCTGC 60.037 55.000 0.00 0.00 29.99 4.26
218 219 0.036952 CACCCAATGACGACTCTGCT 60.037 55.000 0.00 0.00 0.00 4.24
219 220 1.204704 CACCCAATGACGACTCTGCTA 59.795 52.381 0.00 0.00 0.00 3.49
220 221 1.478510 ACCCAATGACGACTCTGCTAG 59.521 52.381 0.00 0.00 0.00 3.42
221 222 1.751351 CCCAATGACGACTCTGCTAGA 59.249 52.381 0.00 0.00 0.00 2.43
233 234 4.040445 CTCTGCTAGAGTTGCTCTTACC 57.960 50.000 3.87 0.00 41.50 2.85
234 235 3.699038 CTCTGCTAGAGTTGCTCTTACCT 59.301 47.826 3.87 0.00 41.50 3.08
235 236 4.090090 TCTGCTAGAGTTGCTCTTACCTT 58.910 43.478 3.87 0.00 41.50 3.50
236 237 4.528596 TCTGCTAGAGTTGCTCTTACCTTT 59.471 41.667 3.87 0.00 41.50 3.11
237 238 5.012148 TCTGCTAGAGTTGCTCTTACCTTTT 59.988 40.000 3.87 0.00 41.50 2.27
238 239 5.621193 TGCTAGAGTTGCTCTTACCTTTTT 58.379 37.500 3.87 0.00 41.50 1.94
276 278 2.159653 GCTCTTACCATTGCAACACTCG 60.160 50.000 0.00 0.00 0.00 4.18
291 293 5.490213 CAACACTCGTAACAAAACTGAGTC 58.510 41.667 0.00 0.00 37.79 3.36
295 297 5.048507 ACTCGTAACAAAACTGAGTCTTCC 58.951 41.667 0.00 0.00 35.04 3.46
419 428 2.831366 GCGAGATGCCACTGCCATG 61.831 63.158 0.00 0.00 37.76 3.66
420 429 2.831366 CGAGATGCCACTGCCATGC 61.831 63.158 0.00 0.00 36.33 4.06
421 430 1.751544 GAGATGCCACTGCCATGCA 60.752 57.895 0.00 0.00 39.68 3.96
468 481 3.285215 GCTCTCCATGCCCATGCG 61.285 66.667 2.75 0.00 41.78 4.73
554 567 8.713708 AGAAAAGAGAAGATAAGATCCGGATA 57.286 34.615 19.15 1.48 0.00 2.59
598 611 2.858344 ACAACGTTTCTCAGAGTTCACG 59.142 45.455 0.00 13.79 0.00 4.35
658 673 2.743928 GGGACGCTGCTTCTGTGG 60.744 66.667 6.09 0.00 0.00 4.17
659 674 2.343758 GGACGCTGCTTCTGTGGA 59.656 61.111 6.09 0.00 0.00 4.02
660 675 1.078848 GGACGCTGCTTCTGTGGAT 60.079 57.895 6.09 0.00 0.00 3.41
661 676 1.364626 GGACGCTGCTTCTGTGGATG 61.365 60.000 6.09 0.00 0.00 3.51
662 677 0.390340 GACGCTGCTTCTGTGGATGA 60.390 55.000 0.00 0.00 0.00 2.92
699 735 5.047188 TCGATACACGTAATCACATGCATT 58.953 37.500 0.00 0.00 43.13 3.56
700 736 6.210078 TCGATACACGTAATCACATGCATTA 58.790 36.000 0.00 0.00 43.13 1.90
702 738 7.383843 TCGATACACGTAATCACATGCATTAAT 59.616 33.333 0.00 0.00 43.13 1.40
842 1105 2.487762 TCAAAAACGGATCTGGCATCAC 59.512 45.455 6.47 0.00 0.00 3.06
858 1126 3.727227 GCATCACATCACATGCATTAACG 59.273 43.478 0.00 0.00 44.18 3.18
884 1159 5.523438 ACTCTCCTCGATCAGGTTAATTC 57.477 43.478 9.98 0.00 43.95 2.17
898 1175 3.264104 GTTAATTCCGTTGACGATGGGA 58.736 45.455 4.91 0.00 43.02 4.37
914 1192 2.022129 GGAGAACACGTGTCTGCGG 61.022 63.158 23.61 0.00 35.98 5.69
916 1194 2.661866 GAACACGTGTCTGCGGCT 60.662 61.111 23.61 3.66 35.98 5.52
953 1237 1.401148 CCACGTCGAACTGGACTGTAG 60.401 57.143 0.00 0.00 34.75 2.74
1006 1305 2.616842 CCTGTTTACTCCACCACACAAC 59.383 50.000 0.00 0.00 0.00 3.32
1026 1325 1.102809 TGCACAACCAGCACCAAGAG 61.103 55.000 0.00 0.00 37.02 2.85
1029 1339 2.023673 CACAACCAGCACCAAGAGAAA 58.976 47.619 0.00 0.00 0.00 2.52
1033 1346 5.047802 CACAACCAGCACCAAGAGAAATAAT 60.048 40.000 0.00 0.00 0.00 1.28
1036 1349 4.946157 ACCAGCACCAAGAGAAATAATGAG 59.054 41.667 0.00 0.00 0.00 2.90
1037 1350 5.188434 CCAGCACCAAGAGAAATAATGAGA 58.812 41.667 0.00 0.00 0.00 3.27
1054 1367 4.498894 TGAGAAAGATGATGAGCACCAT 57.501 40.909 0.00 0.00 38.43 3.55
1061 1374 1.076485 GATGAGCACCATGGCCCTT 60.076 57.895 13.04 0.00 35.17 3.95
1062 1375 0.183492 GATGAGCACCATGGCCCTTA 59.817 55.000 13.04 5.37 35.17 2.69
1389 1702 3.557903 ATCAAGTGCGGCAGCCAGT 62.558 57.895 13.30 0.00 44.33 4.00
1448 1761 2.366301 TGGGGATTCTGCGGCCTA 60.366 61.111 0.00 0.00 0.00 3.93
1631 1944 1.956170 CGGCTGTGACGCTGTCTTT 60.956 57.895 9.49 0.00 33.15 2.52
1636 1949 2.664851 TGACGCTGTCTTTGCCGG 60.665 61.111 0.00 0.00 33.15 6.13
1679 1998 3.636381 TCTTCTCGCAGAATGATGATCG 58.364 45.455 0.08 0.00 39.69 3.69
1681 2000 3.005341 TCTCGCAGAATGATGATCGAC 57.995 47.619 0.00 0.00 39.69 4.20
1685 2004 2.474359 CGCAGAATGATGATCGACCTTC 59.526 50.000 0.00 0.00 39.69 3.46
1762 2082 5.334646 CGGTTTCCCTTCACTTACTTTTAGC 60.335 44.000 0.00 0.00 0.00 3.09
1764 2084 6.208797 GGTTTCCCTTCACTTACTTTTAGCAT 59.791 38.462 0.00 0.00 0.00 3.79
1767 2087 8.561738 TTCCCTTCACTTACTTTTAGCATTAG 57.438 34.615 0.00 0.00 0.00 1.73
1911 2231 3.119637 GGTGTACTATTGTTGCCGCAAAT 60.120 43.478 7.54 1.25 31.63 2.32
2006 2332 6.480524 TCGTTGCAATATATTACCATGAGC 57.519 37.500 0.59 0.00 0.00 4.26
2007 2333 5.994668 TCGTTGCAATATATTACCATGAGCA 59.005 36.000 0.59 0.00 0.00 4.26
2034 2360 3.942829 TCATTACTCCCTTTGCTCAGTG 58.057 45.455 0.00 0.00 0.00 3.66
2277 4929 2.225117 CCAAAAACCCATCACCCTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
2305 4957 4.521062 GTCAGCGCCGCTCCTGAT 62.521 66.667 9.54 0.00 39.95 2.90
2601 5295 3.087253 CCACCACTCCCCGCCATA 61.087 66.667 0.00 0.00 0.00 2.74
2608 5302 2.203938 TCCCCGCCATAGATCCCC 60.204 66.667 0.00 0.00 0.00 4.81
2627 5321 1.966451 CCGCGGCCAAAACTCTCTT 60.966 57.895 14.67 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.709495 TCATAAAAAGCAATGACAATTTAAGCT 57.291 25.926 0.00 0.00 0.00 3.74
68 69 9.545105 TGTCTTCATAAAAAGCAATGACAATTT 57.455 25.926 0.00 0.00 31.99 1.82
69 70 9.545105 TTGTCTTCATAAAAAGCAATGACAATT 57.455 25.926 0.00 0.00 37.11 2.32
70 71 8.981647 GTTGTCTTCATAAAAAGCAATGACAAT 58.018 29.630 0.00 0.00 41.66 2.71
71 72 7.167302 CGTTGTCTTCATAAAAAGCAATGACAA 59.833 33.333 0.00 0.00 38.86 3.18
72 73 6.636447 CGTTGTCTTCATAAAAAGCAATGACA 59.364 34.615 0.00 0.00 34.63 3.58
73 74 6.855914 TCGTTGTCTTCATAAAAAGCAATGAC 59.144 34.615 0.00 0.00 35.64 3.06
74 75 6.855914 GTCGTTGTCTTCATAAAAAGCAATGA 59.144 34.615 0.00 0.00 36.75 2.57
75 76 6.636447 TGTCGTTGTCTTCATAAAAAGCAATG 59.364 34.615 0.00 0.00 34.36 2.82
76 77 6.734137 TGTCGTTGTCTTCATAAAAAGCAAT 58.266 32.000 0.00 0.00 30.61 3.56
77 78 6.125327 TGTCGTTGTCTTCATAAAAAGCAA 57.875 33.333 0.00 0.00 0.00 3.91
78 79 5.743026 TGTCGTTGTCTTCATAAAAAGCA 57.257 34.783 0.00 0.00 0.00 3.91
79 80 7.444558 TTTTGTCGTTGTCTTCATAAAAAGC 57.555 32.000 0.00 0.00 0.00 3.51
110 111 9.813446 GCCTTCAGATCTTTTCATTTATTTGAT 57.187 29.630 0.00 0.00 0.00 2.57
111 112 8.253113 GGCCTTCAGATCTTTTCATTTATTTGA 58.747 33.333 0.00 0.00 0.00 2.69
112 113 7.221452 CGGCCTTCAGATCTTTTCATTTATTTG 59.779 37.037 0.00 0.00 0.00 2.32
113 114 7.260603 CGGCCTTCAGATCTTTTCATTTATTT 58.739 34.615 0.00 0.00 0.00 1.40
114 115 6.681368 GCGGCCTTCAGATCTTTTCATTTATT 60.681 38.462 0.00 0.00 0.00 1.40
115 116 5.221126 GCGGCCTTCAGATCTTTTCATTTAT 60.221 40.000 0.00 0.00 0.00 1.40
116 117 4.096382 GCGGCCTTCAGATCTTTTCATTTA 59.904 41.667 0.00 0.00 0.00 1.40
117 118 3.119352 GCGGCCTTCAGATCTTTTCATTT 60.119 43.478 0.00 0.00 0.00 2.32
118 119 2.424956 GCGGCCTTCAGATCTTTTCATT 59.575 45.455 0.00 0.00 0.00 2.57
119 120 2.019984 GCGGCCTTCAGATCTTTTCAT 58.980 47.619 0.00 0.00 0.00 2.57
120 121 1.271325 TGCGGCCTTCAGATCTTTTCA 60.271 47.619 0.00 0.00 0.00 2.69
121 122 1.453155 TGCGGCCTTCAGATCTTTTC 58.547 50.000 0.00 0.00 0.00 2.29
122 123 2.134789 ATGCGGCCTTCAGATCTTTT 57.865 45.000 0.00 0.00 0.00 2.27
123 124 2.134789 AATGCGGCCTTCAGATCTTT 57.865 45.000 0.00 0.00 0.00 2.52
124 125 3.144506 CATAATGCGGCCTTCAGATCTT 58.855 45.455 0.00 0.00 0.00 2.40
125 126 2.551721 CCATAATGCGGCCTTCAGATCT 60.552 50.000 0.00 0.00 0.00 2.75
126 127 1.808945 CCATAATGCGGCCTTCAGATC 59.191 52.381 0.00 0.00 0.00 2.75
127 128 1.143684 ACCATAATGCGGCCTTCAGAT 59.856 47.619 0.00 0.00 0.00 2.90
128 129 0.546122 ACCATAATGCGGCCTTCAGA 59.454 50.000 0.00 0.00 0.00 3.27
129 130 0.664761 CACCATAATGCGGCCTTCAG 59.335 55.000 0.00 0.00 0.00 3.02
130 131 0.254462 TCACCATAATGCGGCCTTCA 59.746 50.000 0.00 0.00 0.00 3.02
131 132 0.663153 GTCACCATAATGCGGCCTTC 59.337 55.000 0.00 0.00 0.00 3.46
132 133 0.255890 AGTCACCATAATGCGGCCTT 59.744 50.000 0.00 0.00 0.00 4.35
133 134 0.179045 GAGTCACCATAATGCGGCCT 60.179 55.000 0.00 0.00 0.00 5.19
134 135 0.179045 AGAGTCACCATAATGCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
135 136 0.940126 CAGAGTCACCATAATGCGGC 59.060 55.000 0.00 0.00 0.00 6.53
136 137 1.935873 CACAGAGTCACCATAATGCGG 59.064 52.381 0.00 0.00 0.00 5.69
137 138 2.621338 ACACAGAGTCACCATAATGCG 58.379 47.619 0.00 0.00 0.00 4.73
138 139 4.726416 CAAACACAGAGTCACCATAATGC 58.274 43.478 0.00 0.00 0.00 3.56
139 140 4.379813 GGCAAACACAGAGTCACCATAATG 60.380 45.833 0.00 0.00 0.00 1.90
140 141 3.758554 GGCAAACACAGAGTCACCATAAT 59.241 43.478 0.00 0.00 0.00 1.28
141 142 3.146066 GGCAAACACAGAGTCACCATAA 58.854 45.455 0.00 0.00 0.00 1.90
142 143 2.552155 GGGCAAACACAGAGTCACCATA 60.552 50.000 0.00 0.00 0.00 2.74
143 144 1.609208 GGCAAACACAGAGTCACCAT 58.391 50.000 0.00 0.00 0.00 3.55
144 145 0.465460 GGGCAAACACAGAGTCACCA 60.465 55.000 0.00 0.00 0.00 4.17
145 146 0.465460 TGGGCAAACACAGAGTCACC 60.465 55.000 0.00 0.00 0.00 4.02
146 147 0.663153 GTGGGCAAACACAGAGTCAC 59.337 55.000 0.00 0.00 40.99 3.67
147 148 0.254462 TGTGGGCAAACACAGAGTCA 59.746 50.000 4.29 0.00 45.70 3.41
148 149 3.094386 TGTGGGCAAACACAGAGTC 57.906 52.632 4.29 0.00 45.70 3.36
155 156 2.837291 GGCAGGTGTGGGCAAACA 60.837 61.111 0.00 0.00 0.00 2.83
156 157 2.837291 TGGCAGGTGTGGGCAAAC 60.837 61.111 0.00 0.00 37.93 2.93
157 158 2.837291 GTGGCAGGTGTGGGCAAA 60.837 61.111 0.00 0.00 42.83 3.68
162 163 3.883744 GAGGTCGTGGCAGGTGTGG 62.884 68.421 7.12 0.00 0.00 4.17
163 164 1.532604 TAGAGGTCGTGGCAGGTGTG 61.533 60.000 7.12 0.00 0.00 3.82
164 165 0.614979 ATAGAGGTCGTGGCAGGTGT 60.615 55.000 7.12 0.00 0.00 4.16
165 166 0.179100 CATAGAGGTCGTGGCAGGTG 60.179 60.000 7.12 0.00 0.00 4.00
166 167 0.614979 ACATAGAGGTCGTGGCAGGT 60.615 55.000 7.12 0.00 0.00 4.00
167 168 0.179100 CACATAGAGGTCGTGGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
168 169 0.817654 TCACATAGAGGTCGTGGCAG 59.182 55.000 0.00 0.00 0.00 4.85
169 170 0.530744 GTCACATAGAGGTCGTGGCA 59.469 55.000 0.00 0.00 35.36 4.92
170 171 0.525668 CGTCACATAGAGGTCGTGGC 60.526 60.000 0.00 0.00 31.94 5.01
171 172 0.100682 CCGTCACATAGAGGTCGTGG 59.899 60.000 0.00 0.00 0.00 4.94
172 173 1.092348 TCCGTCACATAGAGGTCGTG 58.908 55.000 0.00 0.00 0.00 4.35
173 174 1.676529 CATCCGTCACATAGAGGTCGT 59.323 52.381 0.00 0.00 0.00 4.34
174 175 1.947456 TCATCCGTCACATAGAGGTCG 59.053 52.381 0.00 0.00 0.00 4.79
175 176 2.287069 CGTCATCCGTCACATAGAGGTC 60.287 54.545 0.00 0.00 0.00 3.85
176 177 1.676529 CGTCATCCGTCACATAGAGGT 59.323 52.381 0.00 0.00 0.00 3.85
177 178 1.947456 TCGTCATCCGTCACATAGAGG 59.053 52.381 0.00 0.00 37.94 3.69
178 179 3.251004 TGATCGTCATCCGTCACATAGAG 59.749 47.826 0.00 0.00 37.94 2.43
179 180 3.003378 GTGATCGTCATCCGTCACATAGA 59.997 47.826 0.00 0.00 42.22 1.98
180 181 3.300857 GTGATCGTCATCCGTCACATAG 58.699 50.000 0.00 0.00 42.22 2.23
181 182 2.034179 GGTGATCGTCATCCGTCACATA 59.966 50.000 14.48 0.00 43.31 2.29
182 183 1.202417 GGTGATCGTCATCCGTCACAT 60.202 52.381 14.48 0.00 43.31 3.21
183 184 0.172578 GGTGATCGTCATCCGTCACA 59.827 55.000 14.48 0.00 43.31 3.58
184 185 0.527817 GGGTGATCGTCATCCGTCAC 60.528 60.000 2.22 0.00 37.99 3.67
185 186 1.813859 GGGTGATCGTCATCCGTCA 59.186 57.895 2.22 0.00 37.99 4.35
186 187 4.732106 GGGTGATCGTCATCCGTC 57.268 61.111 2.22 0.00 37.99 4.79
190 191 1.860950 CGTCATTGGGTGATCGTCATC 59.139 52.381 0.00 0.00 39.48 2.92
191 192 1.480545 TCGTCATTGGGTGATCGTCAT 59.519 47.619 0.00 0.00 39.48 3.06
192 193 0.892063 TCGTCATTGGGTGATCGTCA 59.108 50.000 0.00 0.00 39.48 4.35
193 194 1.135083 AGTCGTCATTGGGTGATCGTC 60.135 52.381 0.00 0.00 39.48 4.20
194 195 0.895530 AGTCGTCATTGGGTGATCGT 59.104 50.000 0.00 0.00 39.48 3.73
195 196 1.135139 AGAGTCGTCATTGGGTGATCG 59.865 52.381 0.00 0.00 39.48 3.69
196 197 2.544685 CAGAGTCGTCATTGGGTGATC 58.455 52.381 0.00 0.00 39.48 2.92
197 198 1.406069 GCAGAGTCGTCATTGGGTGAT 60.406 52.381 0.00 0.00 39.48 3.06
198 199 0.037326 GCAGAGTCGTCATTGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
199 200 0.036952 AGCAGAGTCGTCATTGGGTG 60.037 55.000 0.00 0.00 0.00 4.61
200 201 1.478510 CTAGCAGAGTCGTCATTGGGT 59.521 52.381 0.00 0.00 0.00 4.51
201 202 1.751351 TCTAGCAGAGTCGTCATTGGG 59.249 52.381 0.00 0.00 0.00 4.12
202 203 3.077229 CTCTAGCAGAGTCGTCATTGG 57.923 52.381 5.34 0.00 37.57 3.16
213 214 3.702792 AGGTAAGAGCAACTCTAGCAGA 58.297 45.455 0.00 0.00 40.28 4.26
214 215 4.464069 AAGGTAAGAGCAACTCTAGCAG 57.536 45.455 0.00 0.00 40.28 4.24
215 216 4.891992 AAAGGTAAGAGCAACTCTAGCA 57.108 40.909 0.00 0.00 40.28 3.49
238 239 7.500892 TGGTAAGAGCAACTCTATTCACAAAAA 59.499 33.333 0.00 0.00 40.28 1.94
239 240 6.995686 TGGTAAGAGCAACTCTATTCACAAAA 59.004 34.615 0.00 0.00 40.28 2.44
240 241 6.530120 TGGTAAGAGCAACTCTATTCACAAA 58.470 36.000 0.00 0.00 40.28 2.83
241 242 6.109156 TGGTAAGAGCAACTCTATTCACAA 57.891 37.500 0.00 0.00 40.28 3.33
242 243 5.738619 TGGTAAGAGCAACTCTATTCACA 57.261 39.130 0.00 0.00 40.28 3.58
243 244 6.457528 GCAATGGTAAGAGCAACTCTATTCAC 60.458 42.308 0.00 0.00 40.28 3.18
244 245 5.586243 GCAATGGTAAGAGCAACTCTATTCA 59.414 40.000 0.00 0.00 40.28 2.57
245 246 5.586243 TGCAATGGTAAGAGCAACTCTATTC 59.414 40.000 0.00 0.00 40.28 1.75
246 247 5.500234 TGCAATGGTAAGAGCAACTCTATT 58.500 37.500 0.00 0.00 40.28 1.73
247 248 5.102953 TGCAATGGTAAGAGCAACTCTAT 57.897 39.130 0.00 0.00 40.28 1.98
256 257 3.067106 ACGAGTGTTGCAATGGTAAGAG 58.933 45.455 0.59 0.00 0.00 2.85
261 262 2.566913 TGTTACGAGTGTTGCAATGGT 58.433 42.857 0.59 0.00 0.00 3.55
271 273 5.050972 GGAAGACTCAGTTTTGTTACGAGTG 60.051 44.000 0.00 0.00 34.47 3.51
276 278 5.971792 GCAAAGGAAGACTCAGTTTTGTTAC 59.028 40.000 1.80 0.00 0.00 2.50
291 293 2.554032 AGATGACCAAACGCAAAGGAAG 59.446 45.455 0.00 0.00 0.00 3.46
295 297 4.566360 ACAAAAAGATGACCAAACGCAAAG 59.434 37.500 0.00 0.00 0.00 2.77
419 428 2.792674 CGTGATCATTCAATGGCAATGC 59.207 45.455 0.00 0.00 32.48 3.56
420 429 3.794564 CACGTGATCATTCAATGGCAATG 59.205 43.478 10.90 0.00 32.48 2.82
421 430 3.695556 TCACGTGATCATTCAATGGCAAT 59.304 39.130 15.76 0.00 32.48 3.56
422 431 3.080319 TCACGTGATCATTCAATGGCAA 58.920 40.909 15.76 0.00 32.48 4.52
479 492 4.810790 AGATGTAGTTTTGAGAGTCGTGG 58.189 43.478 0.00 0.00 0.00 4.94
549 562 3.424829 GCGTCCATGCATTATGTTATCCG 60.425 47.826 0.00 0.00 34.87 4.18
554 567 2.615447 CTCTGCGTCCATGCATTATGTT 59.385 45.455 0.00 0.00 45.26 2.71
598 611 3.932545 ATAGCATCTGACCTGATCGTC 57.067 47.619 0.00 0.00 0.00 4.20
640 655 3.114616 CACAGAAGCAGCGTCCCG 61.115 66.667 4.52 0.00 0.00 5.14
642 657 1.078848 ATCCACAGAAGCAGCGTCC 60.079 57.895 4.52 0.00 0.00 4.79
643 658 0.390340 TCATCCACAGAAGCAGCGTC 60.390 55.000 0.00 0.00 0.00 5.19
644 659 0.390866 CTCATCCACAGAAGCAGCGT 60.391 55.000 0.00 0.00 0.00 5.07
645 660 1.088340 CCTCATCCACAGAAGCAGCG 61.088 60.000 0.00 0.00 0.00 5.18
646 661 0.251354 TCCTCATCCACAGAAGCAGC 59.749 55.000 0.00 0.00 0.00 5.25
647 662 1.738365 CGTCCTCATCCACAGAAGCAG 60.738 57.143 0.00 0.00 0.00 4.24
648 663 0.247460 CGTCCTCATCCACAGAAGCA 59.753 55.000 0.00 0.00 0.00 3.91
649 664 0.532573 TCGTCCTCATCCACAGAAGC 59.467 55.000 0.00 0.00 0.00 3.86
650 665 1.468224 CGTCGTCCTCATCCACAGAAG 60.468 57.143 0.00 0.00 0.00 2.85
651 666 0.526211 CGTCGTCCTCATCCACAGAA 59.474 55.000 0.00 0.00 0.00 3.02
652 667 0.322187 TCGTCGTCCTCATCCACAGA 60.322 55.000 0.00 0.00 0.00 3.41
653 668 0.526211 TTCGTCGTCCTCATCCACAG 59.474 55.000 0.00 0.00 0.00 3.66
654 669 0.526211 CTTCGTCGTCCTCATCCACA 59.474 55.000 0.00 0.00 0.00 4.17
655 670 0.526662 ACTTCGTCGTCCTCATCCAC 59.473 55.000 0.00 0.00 0.00 4.02
656 671 1.254026 AACTTCGTCGTCCTCATCCA 58.746 50.000 0.00 0.00 0.00 3.41
657 672 2.260481 GAAACTTCGTCGTCCTCATCC 58.740 52.381 0.00 0.00 0.00 3.51
658 673 1.912110 CGAAACTTCGTCGTCCTCATC 59.088 52.381 3.68 0.00 45.09 2.92
659 674 1.978542 CGAAACTTCGTCGTCCTCAT 58.021 50.000 3.68 0.00 45.09 2.90
660 675 3.467043 CGAAACTTCGTCGTCCTCA 57.533 52.632 3.68 0.00 45.09 3.86
714 750 7.778470 AGTTAGGACTAGTACACATACGTAC 57.222 40.000 8.10 0.00 41.75 3.67
715 751 8.696374 AGTAGTTAGGACTAGTACACATACGTA 58.304 37.037 8.10 0.00 39.65 3.57
716 752 7.560368 AGTAGTTAGGACTAGTACACATACGT 58.440 38.462 8.10 0.00 39.65 3.57
717 753 7.925483 AGAGTAGTTAGGACTAGTACACATACG 59.075 40.741 8.10 0.00 41.12 3.06
842 1105 3.876914 AGTACCCGTTAATGCATGTGATG 59.123 43.478 0.00 0.00 0.00 3.07
858 1126 1.133730 ACCTGATCGAGGAGAGTACCC 60.134 57.143 15.51 0.00 46.33 3.69
884 1159 0.037697 TGTTCTCCCATCGTCAACGG 60.038 55.000 2.31 0.00 40.29 4.44
898 1175 2.661866 GCCGCAGACACGTGTTCT 60.662 61.111 24.26 17.53 0.00 3.01
916 1194 3.206957 GCAGCTCGCCATGCATGA 61.207 61.111 28.31 7.35 42.11 3.07
982 1274 0.608308 GTGGTGGAGTAAACAGGCCC 60.608 60.000 0.00 0.00 0.00 5.80
984 1276 1.235724 GTGTGGTGGAGTAAACAGGC 58.764 55.000 0.00 0.00 0.00 4.85
1006 1305 1.102809 TCTTGGTGCTGGTTGTGCAG 61.103 55.000 0.00 0.00 41.41 4.41
1026 1325 8.074972 GGTGCTCATCATCTTTCTCATTATTTC 58.925 37.037 0.00 0.00 0.00 2.17
1029 1339 6.598503 TGGTGCTCATCATCTTTCTCATTAT 58.401 36.000 0.00 0.00 0.00 1.28
1033 1346 3.986996 TGGTGCTCATCATCTTTCTCA 57.013 42.857 0.00 0.00 0.00 3.27
1036 1349 2.034305 GCCATGGTGCTCATCATCTTTC 59.966 50.000 14.67 0.00 32.92 2.62
1037 1350 2.029623 GCCATGGTGCTCATCATCTTT 58.970 47.619 14.67 0.00 32.92 2.52
1268 1581 2.589442 TTGTTGGGACACGTCGCC 60.589 61.111 11.24 5.05 39.29 5.54
1277 1590 1.827789 GCAGCAGTGGTTGTTGGGA 60.828 57.895 0.00 0.00 38.34 4.37
1679 1998 3.142174 GCAATACTGCCATAGGAAGGTC 58.858 50.000 0.00 0.00 43.26 3.85
1911 2231 8.962679 ACAACAGGTCATAACAAGAAAACTAAA 58.037 29.630 0.00 0.00 0.00 1.85
2006 2332 4.885907 AGCAAAGGGAGTAATGATGTGATG 59.114 41.667 0.00 0.00 0.00 3.07
2007 2333 5.121380 AGCAAAGGGAGTAATGATGTGAT 57.879 39.130 0.00 0.00 0.00 3.06
2034 2360 9.813080 CTTATGCAAGACTACACTTTTACTTTC 57.187 33.333 0.00 0.00 33.20 2.62
2112 4747 2.819595 CGGATGGCTTCCACGGTG 60.820 66.667 18.42 0.00 45.78 4.94
2277 4929 0.947180 GGCGCTGACCTAAAACACGA 60.947 55.000 7.64 0.00 0.00 4.35
2349 5003 2.672996 AATGCCGGTGCCAGTGAC 60.673 61.111 1.90 0.00 36.33 3.67
2608 5302 3.431725 GAGAGTTTTGGCCGCGGG 61.432 66.667 29.38 8.95 0.00 6.13
2627 5321 0.320374 CTCCAACGTAAGCCTGTCCA 59.680 55.000 0.00 0.00 45.62 4.02
2689 5388 3.715097 GTCCTCTGGCTGGCTGCT 61.715 66.667 16.14 0.00 42.39 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.