Multiple sequence alignment - TraesCS1D01G327600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G327600 chr1D 100.000 5956 0 0 1 5956 419729490 419723535 0.000000e+00 10999
1 TraesCS1D01G327600 chr1D 95.798 238 9 1 5324 5560 449518342 449518105 3.370000e-102 383
2 TraesCS1D01G327600 chr1D 91.053 190 15 2 2 190 398927729 398927541 7.660000e-64 255
3 TraesCS1D01G327600 chr1A 90.803 2664 152 51 1613 4228 516562119 516559501 0.000000e+00 3476
4 TraesCS1D01G327600 chr1A 90.292 855 37 24 4235 5068 516559453 516558624 0.000000e+00 1077
5 TraesCS1D01G327600 chr1A 76.676 746 77 56 432 1135 516563156 516562466 2.070000e-84 324
6 TraesCS1D01G327600 chr1A 82.237 152 10 2 5174 5325 516557164 516557030 1.360000e-21 115
7 TraesCS1D01G327600 chr1A 91.892 74 6 0 5076 5149 516558111 516558038 2.940000e-18 104
8 TraesCS1D01G327600 chr1B 90.879 2094 111 42 1326 3386 566835734 566833688 0.000000e+00 2736
9 TraesCS1D01G327600 chr1B 89.206 1927 94 46 3422 5326 566833688 566831854 0.000000e+00 2302
10 TraesCS1D01G327600 chr1B 83.223 757 46 34 432 1135 566836644 566835916 2.360000e-173 619
11 TraesCS1D01G327600 chr1B 89.394 132 6 3 5833 5956 566831863 566831732 6.180000e-35 159
12 TraesCS1D01G327600 chr3D 97.426 505 10 3 5326 5827 585010873 585011377 0.000000e+00 857
13 TraesCS1D01G327600 chr3D 92.913 508 10 3 5322 5827 437489897 437490380 0.000000e+00 715
14 TraesCS1D01G327600 chr3D 91.444 187 16 0 1 187 129686290 129686476 2.130000e-64 257
15 TraesCS1D01G327600 chr3D 90.674 193 16 2 1 192 129687200 129687009 7.660000e-64 255
16 TraesCS1D01G327600 chr3D 78.390 236 49 2 1774 2008 423847032 423846798 1.030000e-32 152
17 TraesCS1D01G327600 chr4D 97.053 509 12 3 5322 5827 273155254 273155762 0.000000e+00 854
18 TraesCS1D01G327600 chr4D 96.436 505 17 1 5324 5827 222689843 222689339 0.000000e+00 832
19 TraesCS1D01G327600 chr4D 94.851 505 24 2 5325 5827 455285290 455284786 0.000000e+00 787
20 TraesCS1D01G327600 chr4D 93.548 248 16 0 185 432 416569016 416568769 2.620000e-98 370
21 TraesCS1D01G327600 chr5D 96.627 504 15 2 5325 5827 515248814 515248312 0.000000e+00 835
22 TraesCS1D01G327600 chr5D 92.549 255 19 0 185 439 83916485 83916739 3.390000e-97 366
23 TraesCS1D01G327600 chr5D 92.708 192 14 0 1 192 340327142 340326951 1.630000e-70 278
24 TraesCS1D01G327600 chr5D 91.667 192 16 0 1 192 340326972 340326781 3.540000e-67 267
25 TraesCS1D01G327600 chr5D 90.625 192 18 0 1 192 83912434 83912243 7.660000e-64 255
26 TraesCS1D01G327600 chr7D 96.086 511 19 1 5324 5833 95570168 95569658 0.000000e+00 832
27 TraesCS1D01G327600 chr7D 95.781 237 9 1 5325 5560 76473367 76473131 1.210000e-101 381
28 TraesCS1D01G327600 chr7D 94.332 247 14 0 185 431 106896092 106896338 4.360000e-101 379
29 TraesCS1D01G327600 chr7D 94.583 240 13 0 194 433 534856237 534855998 7.290000e-99 372
30 TraesCS1D01G327600 chr2D 95.935 246 8 2 5317 5560 36217059 36217304 1.200000e-106 398
31 TraesCS1D01G327600 chr2D 95.510 245 11 0 185 429 532005867 532005623 5.600000e-105 392
32 TraesCS1D01G327600 chr2D 95.000 240 12 0 194 433 625516784 625517023 1.570000e-100 377
33 TraesCS1D01G327600 chr6D 94.715 246 13 0 185 430 139931503 139931748 3.370000e-102 383
34 TraesCS1D01G327600 chr6D 95.339 236 11 0 196 431 325816223 325816458 5.640000e-100 375
35 TraesCS1D01G327600 chr6D 94.606 241 13 0 192 432 293105356 293105596 2.030000e-99 374
36 TraesCS1D01G327600 chr6D 93.229 192 13 0 1 192 256720789 256720980 3.510000e-72 283
37 TraesCS1D01G327600 chr6D 91.146 192 17 0 1 192 139926485 139926676 1.650000e-65 261
38 TraesCS1D01G327600 chr6D 91.099 191 15 2 3 192 293101926 293102115 2.130000e-64 257
39 TraesCS1D01G327600 chr3B 93.089 246 12 3 5587 5827 133193835 133194080 7.340000e-94 355
40 TraesCS1D01G327600 chr3B 78.924 223 45 2 1787 2008 553060969 553061190 3.720000e-32 150
41 TraesCS1D01G327600 chr3A 93.061 245 13 3 5587 5827 681124142 681124386 7.340000e-94 355
42 TraesCS1D01G327600 chr3A 78.390 236 48 3 1774 2008 565376695 565376928 3.720000e-32 150
43 TraesCS1D01G327600 chr7A 88.211 246 25 3 5582 5827 30653639 30653398 2.100000e-74 291
44 TraesCS1D01G327600 chr2A 88.400 250 9 4 5587 5827 16764026 16763788 3.510000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G327600 chr1D 419723535 419729490 5955 True 10999.0 10999 100.0000 1 5956 1 chr1D.!!$R2 5955
1 TraesCS1D01G327600 chr1A 516557030 516563156 6126 True 1019.2 3476 86.3800 432 5325 5 chr1A.!!$R1 4893
2 TraesCS1D01G327600 chr1B 566831732 566836644 4912 True 1454.0 2736 88.1755 432 5956 4 chr1B.!!$R1 5524
3 TraesCS1D01G327600 chr3D 585010873 585011377 504 False 857.0 857 97.4260 5326 5827 1 chr3D.!!$F3 501
4 TraesCS1D01G327600 chr4D 273155254 273155762 508 False 854.0 854 97.0530 5322 5827 1 chr4D.!!$F1 505
5 TraesCS1D01G327600 chr4D 222689339 222689843 504 True 832.0 832 96.4360 5324 5827 1 chr4D.!!$R1 503
6 TraesCS1D01G327600 chr4D 455284786 455285290 504 True 787.0 787 94.8510 5325 5827 1 chr4D.!!$R3 502
7 TraesCS1D01G327600 chr5D 515248312 515248814 502 True 835.0 835 96.6270 5325 5827 1 chr5D.!!$R2 502
8 TraesCS1D01G327600 chr7D 95569658 95570168 510 True 832.0 832 96.0860 5324 5833 1 chr7D.!!$R2 509
9 TraesCS1D01G327600 chr6D 293101926 293105596 3670 False 315.5 374 92.8525 3 432 2 chr6D.!!$F5 429

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 3762 0.107993 CTTTCTCTCTGCCATCGCCA 60.108 55.000 0.00 0.0 0.00 5.69 F
1213 4549 0.107703 CGCTCCTTGCCTTGTATCCA 60.108 55.000 0.00 0.0 38.78 3.41 F
1757 5160 0.032540 CCTGCCTGCCTGACAAAAAC 59.967 55.000 0.00 0.0 0.00 2.43 F
1765 5168 0.389025 CCTGACAAAAACCTGTGGCC 59.611 55.000 0.00 0.0 0.00 5.36 F
1770 5173 1.215423 ACAAAAACCTGTGGCCTCTCT 59.785 47.619 3.32 0.0 0.00 3.10 F
3377 6820 1.067142 ACGAGAAATGCCGAGCTGTTA 60.067 47.619 0.00 0.0 0.00 2.41 F
3778 7223 0.032615 ACCAACCTGAAGCAAACCCA 60.033 50.000 0.00 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 4856 0.035725 TCCACCATGAGCAAGCAGAG 60.036 55.000 0.00 0.0 0.00 3.35 R
2058 5462 1.071605 CGTCGCAAGGAAGGAAGAAG 58.928 55.000 0.00 0.0 38.47 2.85 R
3343 6786 1.179152 TCTCGTCCATTTACTCGGCA 58.821 50.000 0.00 0.0 0.00 5.69 R
3358 6801 1.640428 TAACAGCTCGGCATTTCTCG 58.360 50.000 0.00 0.0 0.00 4.04 R
3404 6847 3.070446 TGCTTTGAGGAAAGTCTCGGTAA 59.930 43.478 0.00 0.0 40.77 2.85 R
4245 7731 0.106519 AGCGATGCAGGGGCTAATTT 60.107 50.000 7.11 0.0 41.91 1.82 R
5053 8563 0.250124 TAGCACCACTCAACCCAACG 60.250 55.000 0.00 0.0 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.786495 CGGAGGCGCCACACTCTAT 61.786 63.158 31.54 4.27 35.94 1.98
50 51 1.067669 CTCTATAGTGCAGCGCCTTGA 59.932 52.381 2.29 0.00 0.00 3.02
51 52 1.067669 TCTATAGTGCAGCGCCTTGAG 59.932 52.381 2.29 0.00 0.00 3.02
52 53 0.530650 TATAGTGCAGCGCCTTGAGC 60.531 55.000 2.29 1.03 38.52 4.26
70 71 1.641577 GCCTAGGCGTTTCACTGTAG 58.358 55.000 20.16 0.00 0.00 2.74
85 86 2.037367 TAGAGTGTGGCGCCTCCT 59.963 61.111 29.70 21.77 35.26 3.69
127 298 3.253230 CTTAGCGAAATTTTTGCCCCAG 58.747 45.455 16.13 7.46 0.00 4.45
172 511 5.656859 TGCTTTCTGGATAGCTACAGACTTA 59.343 40.000 12.35 0.00 42.91 2.24
177 516 5.598417 TCTGGATAGCTACAGACTTATGCAA 59.402 40.000 9.41 0.00 38.71 4.08
181 520 1.005975 GCTACAGACTTATGCAACGCG 60.006 52.381 3.53 3.53 0.00 6.01
301 3543 2.887568 CAACGCCGCTGAGCTAGG 60.888 66.667 1.78 0.00 0.00 3.02
323 3565 2.280524 GCACAGTACGGTGTGGCA 60.281 61.111 24.06 0.00 46.73 4.92
357 3599 2.158871 ACGCTACACAAAAAGGTCAGGA 60.159 45.455 0.00 0.00 0.00 3.86
380 3622 3.907894 GTGAAATAGTTTCGCACCCAA 57.092 42.857 10.21 0.00 46.56 4.12
389 3631 4.331968 AGTTTCGCACCCAATTCATTCTA 58.668 39.130 0.00 0.00 0.00 2.10
407 3649 7.630026 TCATTCTATGAAATGATTTCGTTCCG 58.370 34.615 16.84 7.44 39.98 4.30
409 3651 6.828502 TCTATGAAATGATTTCGTTCCGAG 57.171 37.500 16.84 9.07 42.55 4.63
508 3753 5.164138 CGTACGCTTTCTTTCTTTCTCTCTG 60.164 44.000 0.52 0.00 0.00 3.35
509 3754 3.496507 ACGCTTTCTTTCTTTCTCTCTGC 59.503 43.478 0.00 0.00 0.00 4.26
510 3755 3.120373 CGCTTTCTTTCTTTCTCTCTGCC 60.120 47.826 0.00 0.00 0.00 4.85
511 3756 3.817647 GCTTTCTTTCTTTCTCTCTGCCA 59.182 43.478 0.00 0.00 0.00 4.92
512 3757 4.458642 GCTTTCTTTCTTTCTCTCTGCCAT 59.541 41.667 0.00 0.00 0.00 4.40
513 3758 5.391843 GCTTTCTTTCTTTCTCTCTGCCATC 60.392 44.000 0.00 0.00 0.00 3.51
514 3759 3.854666 TCTTTCTTTCTCTCTGCCATCG 58.145 45.455 0.00 0.00 0.00 3.84
516 3761 0.176680 TCTTTCTCTCTGCCATCGCC 59.823 55.000 0.00 0.00 0.00 5.54
517 3762 0.107993 CTTTCTCTCTGCCATCGCCA 60.108 55.000 0.00 0.00 0.00 5.69
522 3767 4.783621 TCTGCCATCGCCAGCCAC 62.784 66.667 0.00 0.00 0.00 5.01
634 3906 5.012239 ACCGTACCGTCCATACATATACAT 58.988 41.667 0.00 0.00 0.00 2.29
639 3911 6.525578 ACCGTCCATACATATACATACAGG 57.474 41.667 0.00 0.00 0.00 4.00
659 3933 1.229788 AGCCAGGCCTTCTCCTTCT 60.230 57.895 8.22 0.00 33.25 2.85
768 4057 4.253257 GTCCGCTCCGCTCCGTAG 62.253 72.222 0.00 0.00 0.00 3.51
799 4088 2.677524 ACGCCACTGTACCGCCTA 60.678 61.111 0.00 0.00 0.00 3.93
800 4089 2.202703 CGCCACTGTACCGCCTAC 60.203 66.667 0.00 0.00 0.00 3.18
914 4213 4.087892 CCGCACCCTCCCTGTCTG 62.088 72.222 0.00 0.00 0.00 3.51
915 4214 2.997315 CGCACCCTCCCTGTCTGA 60.997 66.667 0.00 0.00 0.00 3.27
916 4215 2.362369 CGCACCCTCCCTGTCTGAT 61.362 63.158 0.00 0.00 0.00 2.90
920 4219 0.712979 ACCCTCCCTGTCTGATCTCA 59.287 55.000 0.00 0.00 0.00 3.27
928 4248 1.875813 GTCTGATCTCACTGCCGCG 60.876 63.158 0.00 0.00 0.00 6.46
932 4252 4.498520 ATCTCACTGCCGCGGACG 62.499 66.667 33.48 21.15 39.67 4.79
965 4285 1.148759 GAGCGCATTTCTCGTCTCCC 61.149 60.000 11.47 0.00 0.00 4.30
966 4286 1.153549 GCGCATTTCTCGTCTCCCT 60.154 57.895 0.30 0.00 0.00 4.20
1113 4449 3.466879 GGTACGTACTTGCGCCAC 58.533 61.111 24.07 2.30 34.88 5.01
1114 4450 1.080298 GGTACGTACTTGCGCCACT 60.080 57.895 24.07 0.00 34.88 4.00
1115 4451 1.074872 GGTACGTACTTGCGCCACTC 61.075 60.000 24.07 0.85 34.88 3.51
1116 4452 0.109412 GTACGTACTTGCGCCACTCT 60.109 55.000 18.47 0.00 34.88 3.24
1117 4453 0.169672 TACGTACTTGCGCCACTCTC 59.830 55.000 4.18 0.00 34.88 3.20
1118 4454 1.805945 CGTACTTGCGCCACTCTCC 60.806 63.158 4.18 0.00 0.00 3.71
1119 4455 1.292223 GTACTTGCGCCACTCTCCA 59.708 57.895 4.18 0.00 0.00 3.86
1120 4456 0.108138 GTACTTGCGCCACTCTCCAT 60.108 55.000 4.18 0.00 0.00 3.41
1121 4457 0.175760 TACTTGCGCCACTCTCCATC 59.824 55.000 4.18 0.00 0.00 3.51
1122 4458 1.817099 CTTGCGCCACTCTCCATCC 60.817 63.158 4.18 0.00 0.00 3.51
1123 4459 3.329542 TTGCGCCACTCTCCATCCC 62.330 63.158 4.18 0.00 0.00 3.85
1125 4461 2.765807 CGCCACTCTCCATCCCCT 60.766 66.667 0.00 0.00 0.00 4.79
1127 4463 2.447714 GCCACTCTCCATCCCCTCC 61.448 68.421 0.00 0.00 0.00 4.30
1132 4468 2.525381 CTCCATCCCCTCCCCTCG 60.525 72.222 0.00 0.00 0.00 4.63
1157 4493 1.534729 CCGTTCCCTTGCTTTAGCTT 58.465 50.000 0.00 0.00 42.66 3.74
1159 4495 2.151202 CGTTCCCTTGCTTTAGCTTCA 58.849 47.619 0.00 0.00 42.66 3.02
1162 4498 1.073763 TCCCTTGCTTTAGCTTCAGCA 59.926 47.619 14.00 14.00 44.43 4.41
1186 4522 4.760047 CCGCCGCTAGGTGCTGTT 62.760 66.667 0.00 0.00 46.42 3.16
1188 4524 2.870372 GCCGCTAGGTGCTGTTTG 59.130 61.111 0.00 0.00 40.50 2.93
1192 4528 0.671781 CGCTAGGTGCTGTTTGCTCT 60.672 55.000 0.00 0.00 43.37 4.09
1195 4531 1.728971 CTAGGTGCTGTTTGCTCTTCG 59.271 52.381 0.00 0.00 43.37 3.79
1196 4532 1.081840 GGTGCTGTTTGCTCTTCGC 60.082 57.895 0.00 0.00 43.37 4.70
1201 4537 1.517242 CTGTTTGCTCTTCGCTCCTT 58.483 50.000 0.00 0.00 40.11 3.36
1205 4541 2.116983 TTGCTCTTCGCTCCTTGCCT 62.117 55.000 0.00 0.00 40.11 4.75
1206 4542 1.376553 GCTCTTCGCTCCTTGCCTT 60.377 57.895 0.00 0.00 38.78 4.35
1209 4545 0.973632 TCTTCGCTCCTTGCCTTGTA 59.026 50.000 0.00 0.00 38.78 2.41
1212 4548 0.178068 TCGCTCCTTGCCTTGTATCC 59.822 55.000 0.00 0.00 38.78 2.59
1213 4549 0.107703 CGCTCCTTGCCTTGTATCCA 60.108 55.000 0.00 0.00 38.78 3.41
1215 4551 2.225467 GCTCCTTGCCTTGTATCCATC 58.775 52.381 0.00 0.00 35.15 3.51
1216 4552 2.487934 CTCCTTGCCTTGTATCCATCG 58.512 52.381 0.00 0.00 0.00 3.84
1217 4553 2.103094 CTCCTTGCCTTGTATCCATCGA 59.897 50.000 0.00 0.00 0.00 3.59
1218 4554 2.158957 TCCTTGCCTTGTATCCATCGAC 60.159 50.000 0.00 0.00 0.00 4.20
1223 4559 1.603172 CCTTGTATCCATCGACGGAGC 60.603 57.143 6.32 2.01 38.83 4.70
1225 4561 0.668535 TGTATCCATCGACGGAGCAG 59.331 55.000 6.32 0.00 38.83 4.24
1226 4562 0.664767 GTATCCATCGACGGAGCAGC 60.665 60.000 6.32 0.00 38.83 5.25
1227 4563 0.823769 TATCCATCGACGGAGCAGCT 60.824 55.000 6.32 0.00 38.83 4.24
1228 4564 0.823769 ATCCATCGACGGAGCAGCTA 60.824 55.000 6.32 0.00 38.83 3.32
1229 4565 1.299468 CCATCGACGGAGCAGCTAC 60.299 63.158 0.00 0.00 0.00 3.58
1231 4567 3.471244 ATCGACGGAGCAGCTACGC 62.471 63.158 27.66 17.98 42.26 4.42
1233 4569 4.477975 GACGGAGCAGCTACGCGT 62.478 66.667 27.66 19.17 42.26 6.01
1234 4570 3.966026 GACGGAGCAGCTACGCGTT 62.966 63.158 27.66 7.77 42.26 4.84
1235 4571 2.809601 CGGAGCAGCTACGCGTTT 60.810 61.111 20.78 0.00 36.85 3.60
1236 4572 2.789203 CGGAGCAGCTACGCGTTTC 61.789 63.158 20.78 9.98 36.85 2.78
1237 4573 1.736645 GGAGCAGCTACGCGTTTCA 60.737 57.895 20.78 0.00 36.85 2.69
1238 4574 1.687494 GGAGCAGCTACGCGTTTCAG 61.687 60.000 20.78 10.66 36.85 3.02
1239 4575 1.006102 AGCAGCTACGCGTTTCAGT 60.006 52.632 20.78 0.00 36.85 3.41
1240 4576 0.600255 AGCAGCTACGCGTTTCAGTT 60.600 50.000 20.78 3.52 36.85 3.16
1241 4577 0.234884 GCAGCTACGCGTTTCAGTTT 59.765 50.000 20.78 0.00 0.00 2.66
1242 4578 1.333791 GCAGCTACGCGTTTCAGTTTT 60.334 47.619 20.78 0.00 0.00 2.43
1243 4579 2.298300 CAGCTACGCGTTTCAGTTTTG 58.702 47.619 20.78 5.80 0.00 2.44
1244 4580 1.263217 AGCTACGCGTTTCAGTTTTGG 59.737 47.619 20.78 0.00 0.00 3.28
1245 4581 1.670326 CTACGCGTTTCAGTTTTGGC 58.330 50.000 20.78 0.00 0.00 4.52
1246 4582 0.308376 TACGCGTTTCAGTTTTGGCC 59.692 50.000 20.78 0.00 0.00 5.36
1247 4583 1.358759 CGCGTTTCAGTTTTGGCCT 59.641 52.632 3.32 0.00 0.00 5.19
1248 4584 0.589223 CGCGTTTCAGTTTTGGCCTA 59.411 50.000 3.32 0.00 0.00 3.93
1249 4585 1.662026 CGCGTTTCAGTTTTGGCCTAC 60.662 52.381 3.32 0.00 0.00 3.18
1250 4586 1.335597 GCGTTTCAGTTTTGGCCTACC 60.336 52.381 3.32 0.00 0.00 3.18
1251 4587 2.227194 CGTTTCAGTTTTGGCCTACCT 58.773 47.619 3.32 0.00 36.63 3.08
1252 4588 2.031157 CGTTTCAGTTTTGGCCTACCTG 60.031 50.000 3.32 5.49 36.63 4.00
1253 4589 3.219281 GTTTCAGTTTTGGCCTACCTGA 58.781 45.455 3.32 7.97 36.63 3.86
1254 4590 3.806949 TTCAGTTTTGGCCTACCTGAT 57.193 42.857 13.92 0.00 36.63 2.90
1255 4591 4.919774 TTCAGTTTTGGCCTACCTGATA 57.080 40.909 13.92 5.67 36.63 2.15
1256 4592 4.919774 TCAGTTTTGGCCTACCTGATAA 57.080 40.909 3.32 0.00 36.63 1.75
1257 4593 5.450818 TCAGTTTTGGCCTACCTGATAAT 57.549 39.130 3.32 0.00 36.63 1.28
1258 4594 5.437060 TCAGTTTTGGCCTACCTGATAATC 58.563 41.667 3.32 0.00 36.63 1.75
1259 4595 5.191722 TCAGTTTTGGCCTACCTGATAATCT 59.808 40.000 3.32 0.00 36.63 2.40
1260 4596 5.297776 CAGTTTTGGCCTACCTGATAATCTG 59.702 44.000 3.32 0.00 36.63 2.90
1261 4597 5.191722 AGTTTTGGCCTACCTGATAATCTGA 59.808 40.000 3.32 0.00 36.63 3.27
1262 4598 5.708736 TTTGGCCTACCTGATAATCTGAA 57.291 39.130 3.32 0.00 36.63 3.02
1263 4599 5.912149 TTGGCCTACCTGATAATCTGAAT 57.088 39.130 3.32 0.00 36.63 2.57
1264 4600 7.387265 TTTGGCCTACCTGATAATCTGAATA 57.613 36.000 3.32 0.00 36.63 1.75
1265 4601 6.611613 TGGCCTACCTGATAATCTGAATAG 57.388 41.667 3.32 0.00 36.63 1.73
1266 4602 6.084738 TGGCCTACCTGATAATCTGAATAGT 58.915 40.000 3.32 0.00 36.63 2.12
1287 4623 0.880278 TTCCTGTTCGTCTGTGCTGC 60.880 55.000 0.00 0.00 0.00 5.25
1290 4626 0.940126 CTGTTCGTCTGTGCTGCTTT 59.060 50.000 0.00 0.00 0.00 3.51
1301 4637 2.424601 TGTGCTGCTTTTATGCTCATCC 59.575 45.455 0.00 0.00 0.00 3.51
1311 4678 6.571150 GCTTTTATGCTCATCCTTCAGTTTGT 60.571 38.462 0.00 0.00 0.00 2.83
1315 4682 3.072330 TGCTCATCCTTCAGTTTGTACCA 59.928 43.478 0.00 0.00 0.00 3.25
1323 4690 6.833041 TCCTTCAGTTTGTACCAGTGAATTA 58.167 36.000 11.11 3.11 0.00 1.40
1331 4703 2.665649 ACCAGTGAATTACGCGATCA 57.334 45.000 15.93 8.90 0.00 2.92
1338 4710 5.449113 CAGTGAATTACGCGATCAATTTCAC 59.551 40.000 15.93 20.21 0.00 3.18
1360 4732 3.199508 CCAGGTGAACATCCTCAGATTCT 59.800 47.826 0.00 0.00 32.37 2.40
1363 4735 3.118956 GGTGAACATCCTCAGATTCTCGT 60.119 47.826 0.00 0.00 0.00 4.18
1366 4738 2.461695 ACATCCTCAGATTCTCGTGGT 58.538 47.619 0.00 0.00 0.00 4.16
1371 4743 0.601057 TCAGATTCTCGTGGTTCGCA 59.399 50.000 0.00 0.00 39.67 5.10
1373 4745 0.389948 AGATTCTCGTGGTTCGCACC 60.390 55.000 0.00 0.00 44.56 5.01
1418 4790 5.324832 GATCCCAATCCAAGAAATAGGGA 57.675 43.478 0.00 0.00 46.92 4.20
1480 4856 8.617761 TCGATTTGTTAATTAAAATTACCGGC 57.382 30.769 0.00 0.00 31.03 6.13
1599 4981 2.916640 TGCACATCGCTATCATTTCCA 58.083 42.857 0.00 0.00 43.06 3.53
1600 4982 2.613595 TGCACATCGCTATCATTTCCAC 59.386 45.455 0.00 0.00 43.06 4.02
1602 4984 3.470709 CACATCGCTATCATTTCCACCT 58.529 45.455 0.00 0.00 0.00 4.00
1606 4988 4.487714 TCGCTATCATTTCCACCTCTTT 57.512 40.909 0.00 0.00 0.00 2.52
1608 4990 5.984725 TCGCTATCATTTCCACCTCTTTTA 58.015 37.500 0.00 0.00 0.00 1.52
1713 5099 6.882610 TCACAATCCTATGACAATAATGCC 57.117 37.500 0.00 0.00 0.00 4.40
1757 5160 0.032540 CCTGCCTGCCTGACAAAAAC 59.967 55.000 0.00 0.00 0.00 2.43
1765 5168 0.389025 CCTGACAAAAACCTGTGGCC 59.611 55.000 0.00 0.00 0.00 5.36
1769 5172 1.609072 GACAAAAACCTGTGGCCTCTC 59.391 52.381 3.32 0.00 0.00 3.20
1770 5173 1.215423 ACAAAAACCTGTGGCCTCTCT 59.785 47.619 3.32 0.00 0.00 3.10
1771 5174 2.310538 CAAAAACCTGTGGCCTCTCTT 58.689 47.619 3.32 0.00 0.00 2.85
1772 5175 2.278332 AAAACCTGTGGCCTCTCTTC 57.722 50.000 3.32 0.00 0.00 2.87
2024 5427 4.201783 CCAGGTAAAAATTAAGGAGCGACG 60.202 45.833 0.00 0.00 0.00 5.12
2026 5429 5.293569 CAGGTAAAAATTAAGGAGCGACGAT 59.706 40.000 0.00 0.00 0.00 3.73
2044 5448 2.774007 GATGACGACGGCTTTTGAATG 58.226 47.619 0.65 0.00 0.00 2.67
2057 5461 5.335976 GGCTTTTGAATGAAATCGACCTTCT 60.336 40.000 9.74 0.00 0.00 2.85
2058 5462 5.797434 GCTTTTGAATGAAATCGACCTTCTC 59.203 40.000 9.74 2.42 0.00 2.87
2064 5468 6.591834 TGAATGAAATCGACCTTCTCTTCTTC 59.408 38.462 16.70 10.55 0.00 2.87
2168 5577 1.672356 GCGCCCAAGAGAAAGCTCA 60.672 57.895 0.00 0.00 43.81 4.26
2275 5691 4.681483 GTGGTTGTCTATTCTTTGCTTTGC 59.319 41.667 0.00 0.00 0.00 3.68
2329 5752 5.277857 AGTGTATGTAGCTTGGTATGTCC 57.722 43.478 0.00 0.00 0.00 4.02
2414 5837 7.865706 ATTCACACAGTTGACTTCTACTTTT 57.134 32.000 0.00 0.00 29.82 2.27
2585 6008 3.904571 CCACATGTTGGTTTGTCATGAG 58.095 45.455 0.00 3.73 41.10 2.90
2593 6016 3.138304 TGGTTTGTCATGAGACTTTCCG 58.862 45.455 0.00 0.00 45.20 4.30
2603 6026 2.290071 TGAGACTTTCCGGGAAATGTCC 60.290 50.000 28.71 23.65 44.10 4.02
2629 6052 7.201496 CCTTTGAATGAGTGCATTGCTAAATTC 60.201 37.037 10.49 13.07 44.47 2.17
2630 6053 6.519679 TGAATGAGTGCATTGCTAAATTCT 57.480 33.333 10.49 0.00 44.47 2.40
2661 6084 5.396362 CAGTTTGTGTCTGCGTTTCTTATTG 59.604 40.000 0.00 0.00 0.00 1.90
2668 6091 7.041712 TGTGTCTGCGTTTCTTATTGTTAATCA 60.042 33.333 0.00 0.00 0.00 2.57
2697 6120 3.737559 ATTAATTCACTGCCAGTGGGA 57.262 42.857 23.85 13.69 45.94 4.37
2709 6132 5.103940 ACTGCCAGTGGGATACAATAATTCT 60.104 40.000 12.15 0.00 35.59 2.40
2711 6134 6.296026 TGCCAGTGGGATACAATAATTCTAC 58.704 40.000 12.15 0.00 35.59 2.59
2712 6135 6.101150 TGCCAGTGGGATACAATAATTCTACT 59.899 38.462 12.15 0.00 35.59 2.57
2713 6136 6.998673 GCCAGTGGGATACAATAATTCTACTT 59.001 38.462 12.15 0.00 35.59 2.24
2718 6141 9.826574 GTGGGATACAATAATTCTACTTGTGTA 57.173 33.333 0.00 0.00 35.00 2.90
2763 6187 6.145209 CGAAATATGTCTGCATAGGAGAACTG 59.855 42.308 0.00 0.00 40.51 3.16
2871 6302 7.147915 GCATCATCTATCTCCCTAACTTCCTAG 60.148 44.444 0.00 0.00 0.00 3.02
2916 6352 6.818644 TGTTTACAACTTAGATCTGAGATGGC 59.181 38.462 23.07 13.30 0.00 4.40
2927 6363 6.424883 AGATCTGAGATGGCATTTTCTTCTT 58.575 36.000 0.00 0.00 0.00 2.52
3032 6470 7.872993 CACCAAAACTGAAGTCTAGTATCTGAA 59.127 37.037 0.00 0.00 0.00 3.02
3322 6760 6.072112 TCACTGTAAATTTCTTCTGGCAAC 57.928 37.500 0.00 0.00 0.00 4.17
3346 6789 3.322230 CACACTTTGCACAAAAATGCC 57.678 42.857 0.00 0.00 45.50 4.40
3358 6801 4.621034 CACAAAAATGCCGAGTAAATGGAC 59.379 41.667 0.00 0.00 0.00 4.02
3377 6820 1.067142 ACGAGAAATGCCGAGCTGTTA 60.067 47.619 0.00 0.00 0.00 2.41
3378 6821 1.999735 CGAGAAATGCCGAGCTGTTAA 59.000 47.619 0.00 0.00 0.00 2.01
3404 6847 7.814264 AACTGATTTGAGAAGACAGAAACAT 57.186 32.000 0.00 0.00 33.53 2.71
3408 6851 8.099364 TGATTTGAGAAGACAGAAACATTACC 57.901 34.615 0.00 0.00 0.00 2.85
3437 6880 2.634940 TCCTCAAAGCAAGTAGAGCAGT 59.365 45.455 0.00 0.00 0.00 4.40
3455 6898 8.541133 AGAGCAGTTAAATAGAAGACTTTGTC 57.459 34.615 0.00 0.00 0.00 3.18
3457 6900 9.640963 GAGCAGTTAAATAGAAGACTTTGTCTA 57.359 33.333 0.34 0.00 42.59 2.59
3475 6920 5.812286 TGTCTATACGCTGATCACCCTATA 58.188 41.667 0.00 0.00 0.00 1.31
3714 7159 5.049167 TGATCAAAATGAACAAGGTTGCAC 58.951 37.500 0.00 0.00 0.00 4.57
3778 7223 0.032615 ACCAACCTGAAGCAAACCCA 60.033 50.000 0.00 0.00 0.00 4.51
3781 7226 2.031120 CAACCTGAAGCAAACCCAGAA 58.969 47.619 0.00 0.00 0.00 3.02
3826 7271 6.155827 TGAAAGGAAACAAGCAATTTATCCG 58.844 36.000 0.00 0.00 0.00 4.18
3846 7291 4.870426 TCCGAACTGAATTAGCTGATGAAC 59.130 41.667 0.00 0.00 0.00 3.18
3857 7302 3.894759 AGCTGATGAACCATTATGCACT 58.105 40.909 0.00 0.00 0.00 4.40
3990 7435 1.340405 ACACTGTCATGGGAGCCATTC 60.340 52.381 0.00 0.00 42.23 2.67
4104 7549 1.049289 AGGATTACTGGGAGCCGGTC 61.049 60.000 1.90 0.00 42.88 4.79
4167 7612 2.240500 GCCTTACCGCATCGAGCTG 61.241 63.158 0.00 0.00 42.61 4.24
4229 7674 6.031964 AGGAATCAGGTGAATCTCCTACTA 57.968 41.667 3.28 0.00 32.97 1.82
4230 7675 6.444704 AGGAATCAGGTGAATCTCCTACTAA 58.555 40.000 3.28 0.00 32.97 2.24
4231 7676 7.079048 AGGAATCAGGTGAATCTCCTACTAAT 58.921 38.462 3.28 0.00 32.97 1.73
4233 7678 7.875554 GGAATCAGGTGAATCTCCTACTAATTC 59.124 40.741 3.28 10.14 33.54 2.17
4245 7731 4.473196 TCCTACTAATTCAGTCCATGCCAA 59.527 41.667 0.00 0.00 38.80 4.52
4263 7749 0.746659 AAAATTAGCCCCTGCATCGC 59.253 50.000 0.00 0.00 41.13 4.58
4265 7751 0.820891 AATTAGCCCCTGCATCGCTG 60.821 55.000 11.42 0.00 41.13 5.18
4351 7837 2.972021 TGAACATCTCACCCAACAGAGA 59.028 45.455 0.00 0.00 44.27 3.10
4376 7862 7.344913 AGGAAGATTTCTGCTCATACTTGAAT 58.655 34.615 0.00 0.00 0.00 2.57
4377 7863 7.282675 AGGAAGATTTCTGCTCATACTTGAATG 59.717 37.037 0.00 0.00 0.00 2.67
4401 7887 6.012658 TGGAAACACAGAAGCATTTGTATC 57.987 37.500 0.00 0.00 33.40 2.24
4402 7888 5.769662 TGGAAACACAGAAGCATTTGTATCT 59.230 36.000 0.00 0.00 33.40 1.98
4403 7889 6.939730 TGGAAACACAGAAGCATTTGTATCTA 59.060 34.615 0.00 0.00 33.40 1.98
4404 7890 7.446931 TGGAAACACAGAAGCATTTGTATCTAA 59.553 33.333 0.00 0.00 33.40 2.10
4573 8059 1.603739 GTGCCCCAAAGGTGAGGAC 60.604 63.158 0.00 0.00 38.26 3.85
4574 8060 1.774217 TGCCCCAAAGGTGAGGACT 60.774 57.895 0.00 0.00 38.26 3.85
4575 8061 0.474854 TGCCCCAAAGGTGAGGACTA 60.475 55.000 0.00 0.00 38.26 2.59
4582 8068 2.893398 GGTGAGGACTAGCCACCG 59.107 66.667 7.98 0.00 40.61 4.94
4605 8091 1.466167 CTGTCCGAAGCCAACAATGAG 59.534 52.381 0.00 0.00 0.00 2.90
4606 8092 1.071542 TGTCCGAAGCCAACAATGAGA 59.928 47.619 0.00 0.00 0.00 3.27
4607 8093 1.734465 GTCCGAAGCCAACAATGAGAG 59.266 52.381 0.00 0.00 0.00 3.20
4608 8094 1.347707 TCCGAAGCCAACAATGAGAGT 59.652 47.619 0.00 0.00 0.00 3.24
4613 8099 4.377431 CGAAGCCAACAATGAGAGTACAAC 60.377 45.833 0.00 0.00 0.00 3.32
4616 8102 3.750371 CCAACAATGAGAGTACAACCCA 58.250 45.455 0.00 0.00 0.00 4.51
4649 8135 5.605564 TGGAGTATCATGTTTGTTGAACG 57.394 39.130 0.00 0.00 37.79 3.95
4650 8136 4.083537 TGGAGTATCATGTTTGTTGAACGC 60.084 41.667 0.00 0.00 37.79 4.84
4651 8137 4.154195 GGAGTATCATGTTTGTTGAACGCT 59.846 41.667 0.00 0.00 37.79 5.07
4652 8138 5.034554 AGTATCATGTTTGTTGAACGCTG 57.965 39.130 0.00 0.00 41.29 5.18
4653 8139 3.988379 ATCATGTTTGTTGAACGCTGT 57.012 38.095 0.00 0.00 41.29 4.40
4654 8140 3.773860 TCATGTTTGTTGAACGCTGTT 57.226 38.095 0.00 0.00 41.29 3.16
4655 8141 3.433709 TCATGTTTGTTGAACGCTGTTG 58.566 40.909 0.00 0.00 41.29 3.33
4656 8142 1.623359 TGTTTGTTGAACGCTGTTGC 58.377 45.000 0.00 0.00 41.29 4.17
4832 8327 3.733960 CAGGACCTCGTCGCGTCA 61.734 66.667 5.77 0.00 32.65 4.35
5010 8508 1.166129 GAGGGCGTTTTCTTTCTCCC 58.834 55.000 0.00 0.00 0.00 4.30
5049 8559 2.056906 GACACTGTCAGGCTGGGGTT 62.057 60.000 15.73 3.04 32.09 4.11
5051 8561 0.468029 CACTGTCAGGCTGGGGTTTT 60.468 55.000 15.73 0.00 0.00 2.43
5052 8562 0.178990 ACTGTCAGGCTGGGGTTTTC 60.179 55.000 15.73 0.00 0.00 2.29
5053 8563 0.895559 CTGTCAGGCTGGGGTTTTCC 60.896 60.000 15.73 0.00 39.75 3.13
5142 9158 3.181465 ACCCGATCCATCATTGTGTACTC 60.181 47.826 0.00 0.00 0.00 2.59
5159 10040 6.082338 GTGTACTCTTCTCGTATCGAAAACA 58.918 40.000 0.00 0.00 34.74 2.83
5160 10041 6.032251 GTGTACTCTTCTCGTATCGAAAACAC 59.968 42.308 0.00 0.00 34.74 3.32
5161 10042 5.117355 ACTCTTCTCGTATCGAAAACACA 57.883 39.130 0.00 0.00 34.74 3.72
5162 10043 4.916249 ACTCTTCTCGTATCGAAAACACAC 59.084 41.667 0.00 0.00 34.74 3.82
5163 10044 4.862350 TCTTCTCGTATCGAAAACACACA 58.138 39.130 0.00 0.00 34.74 3.72
5164 10045 4.678287 TCTTCTCGTATCGAAAACACACAC 59.322 41.667 0.00 0.00 34.74 3.82
5165 10046 3.967401 TCTCGTATCGAAAACACACACA 58.033 40.909 0.00 0.00 34.74 3.72
5168 10049 3.243410 TCGTATCGAAAACACACACACAC 59.757 43.478 0.00 0.00 31.06 3.82
5174 10055 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
5181 10062 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
5356 10241 5.692115 ATGTTTTTGGTCCCTCAAGTTTT 57.308 34.783 0.00 0.00 0.00 2.43
5500 10386 2.094762 AACCGCCTGATGAACAGTAC 57.905 50.000 0.00 0.00 44.40 2.73
5504 10390 3.009723 CCGCCTGATGAACAGTACATTT 58.990 45.455 0.00 0.00 44.40 2.32
5592 10480 7.689299 AGCATATAAGCATATTGGACACCTTA 58.311 34.615 2.37 0.00 36.85 2.69
5764 10655 4.416848 AGACTTGAGGGGCCAAATGTATAT 59.583 41.667 4.39 0.00 0.00 0.86
5827 10718 5.535030 ACTTGAGGGACCAAAAACATACTTC 59.465 40.000 0.00 0.00 0.00 3.01
5829 10720 5.701224 TGAGGGACCAAAAACATACTTCTT 58.299 37.500 0.00 0.00 0.00 2.52
5833 10724 6.782494 AGGGACCAAAAACATACTTCTTTCAT 59.218 34.615 0.00 0.00 0.00 2.57
5834 10725 7.947890 AGGGACCAAAAACATACTTCTTTCATA 59.052 33.333 0.00 0.00 0.00 2.15
5835 10726 8.749354 GGGACCAAAAACATACTTCTTTCATAT 58.251 33.333 0.00 0.00 0.00 1.78
5836 10727 9.573133 GGACCAAAAACATACTTCTTTCATATG 57.427 33.333 0.00 0.00 33.38 1.78
5887 10782 5.623673 GTCAATTGGTAATCGTGTGAACAAC 59.376 40.000 5.42 0.00 0.00 3.32
5902 10797 1.084290 CAACGTCGCACACAACTCG 60.084 57.895 0.00 0.00 0.00 4.18
5908 10803 0.856641 TCGCACACAACTCGTTAAGC 59.143 50.000 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.434884 GCTCAAGGCGCTGCACTA 60.435 61.111 7.64 0.00 0.00 2.74
40 41 2.202987 CCTAGGCTCAAGGCGCTG 60.203 66.667 7.64 0.00 46.23 5.18
50 51 1.204941 CTACAGTGAAACGCCTAGGCT 59.795 52.381 30.55 13.30 45.86 4.58
51 52 1.203994 TCTACAGTGAAACGCCTAGGC 59.796 52.381 24.75 24.75 45.86 3.93
52 53 2.492484 ACTCTACAGTGAAACGCCTAGG 59.508 50.000 3.67 3.67 45.86 3.02
70 71 2.496817 CTAGGAGGCGCCACACTC 59.503 66.667 31.54 17.53 40.02 3.51
127 298 2.399580 ACATAAGGTAGGCCTCCAGTC 58.600 52.381 9.68 0.00 46.33 3.51
144 315 5.102953 TGTAGCTATCCAGAAAGCAACAT 57.897 39.130 0.00 0.00 41.32 2.71
152 323 5.598417 TGCATAAGTCTGTAGCTATCCAGAA 59.402 40.000 13.92 2.19 39.29 3.02
177 516 3.687321 TAGACTCCGGGCTACGCGT 62.687 63.158 19.17 19.17 42.52 6.01
181 520 2.553727 CGCCTAGACTCCGGGCTAC 61.554 68.421 0.00 0.00 43.29 3.58
187 526 3.826754 TGCAGCGCCTAGACTCCG 61.827 66.667 2.29 0.00 0.00 4.63
301 3543 3.777925 CACCGTACTGTGCAGCGC 61.778 66.667 0.00 0.00 0.00 5.92
336 3578 2.158871 TCCTGACCTTTTTGTGTAGCGT 60.159 45.455 0.00 0.00 0.00 5.07
357 3599 3.244422 TGGGTGCGAAACTATTTCACTCT 60.244 43.478 2.50 0.00 39.63 3.24
401 3643 8.625373 AAATTTGACAATTTTGACCTCGGAACG 61.625 37.037 7.15 0.00 46.37 3.95
404 3646 5.782893 AATTTGACAATTTTGACCTCGGA 57.217 34.783 0.00 0.00 0.00 4.55
407 3649 5.333263 CGGCAAATTTGACAATTTTGACCTC 60.333 40.000 27.56 15.64 40.09 3.85
409 3651 4.319405 CCGGCAAATTTGACAATTTTGACC 60.319 41.667 27.56 24.76 40.09 4.02
441 3683 2.041701 AGTTTTGACTTTGCTGCCCAT 58.958 42.857 0.00 0.00 0.00 4.00
470 3712 0.575390 CGTACGGGTGAAATGATCGC 59.425 55.000 7.57 0.00 37.85 4.58
537 3782 4.892965 TGGTGGTGTGCAGGGTGC 62.893 66.667 0.00 0.00 45.29 5.01
547 3792 2.124693 GTGGTTGGTGGTGGTGGTG 61.125 63.158 0.00 0.00 0.00 4.17
548 3793 2.277404 GTGGTTGGTGGTGGTGGT 59.723 61.111 0.00 0.00 0.00 4.16
549 3794 2.520741 GGTGGTTGGTGGTGGTGG 60.521 66.667 0.00 0.00 0.00 4.61
639 3911 3.279504 AAGGAGAAGGCCTGGCTGC 62.280 63.158 19.68 12.99 38.58 5.25
651 3925 1.002087 GCGTGGAAGGAAAGAAGGAGA 59.998 52.381 0.00 0.00 0.00 3.71
652 3926 1.443802 GCGTGGAAGGAAAGAAGGAG 58.556 55.000 0.00 0.00 0.00 3.69
766 4055 1.745320 GCGTGCCCCTAGCTAAGCTA 61.745 60.000 10.43 0.00 44.23 3.32
767 4056 3.095347 GCGTGCCCCTAGCTAAGCT 62.095 63.158 10.43 0.00 44.23 3.74
768 4057 2.589159 GCGTGCCCCTAGCTAAGC 60.589 66.667 0.00 0.00 44.23 3.09
908 4207 0.805322 GCGGCAGTGAGATCAGACAG 60.805 60.000 0.00 0.00 0.00 3.51
910 4209 1.875813 CGCGGCAGTGAGATCAGAC 60.876 63.158 0.00 0.00 0.00 3.51
911 4210 2.491621 CGCGGCAGTGAGATCAGA 59.508 61.111 0.00 0.00 0.00 3.27
912 4211 2.584418 CCGCGGCAGTGAGATCAG 60.584 66.667 14.67 0.00 0.00 2.90
913 4212 3.068064 TCCGCGGCAGTGAGATCA 61.068 61.111 23.51 0.00 0.00 2.92
914 4213 2.583593 GTCCGCGGCAGTGAGATC 60.584 66.667 23.51 0.00 0.00 2.75
915 4214 4.498520 CGTCCGCGGCAGTGAGAT 62.499 66.667 23.51 0.00 0.00 2.75
928 4248 3.003763 AACAGGCCCTCCTCGTCC 61.004 66.667 0.00 0.00 41.93 4.79
932 4252 2.270527 GCTCAACAGGCCCTCCTC 59.729 66.667 0.00 0.00 41.93 3.71
933 4253 3.710722 CGCTCAACAGGCCCTCCT 61.711 66.667 0.00 0.00 45.66 3.69
945 4265 0.458543 GGAGACGAGAAATGCGCTCA 60.459 55.000 9.73 0.00 35.30 4.26
946 4266 1.148759 GGGAGACGAGAAATGCGCTC 61.149 60.000 9.73 0.00 33.96 5.03
947 4267 1.153549 GGGAGACGAGAAATGCGCT 60.154 57.895 9.73 0.00 0.00 5.92
996 4332 4.530857 CCGTCGTCCCTCATGCCC 62.531 72.222 0.00 0.00 0.00 5.36
1103 4439 1.078848 GATGGAGAGTGGCGCAAGT 60.079 57.895 10.83 0.00 41.68 3.16
1105 4441 2.268920 GGATGGAGAGTGGCGCAA 59.731 61.111 10.83 0.00 0.00 4.85
1110 4446 1.768077 GGGAGGGGATGGAGAGTGG 60.768 68.421 0.00 0.00 0.00 4.00
1111 4447 1.768077 GGGGAGGGGATGGAGAGTG 60.768 68.421 0.00 0.00 0.00 3.51
1112 4448 1.949449 AGGGGAGGGGATGGAGAGT 60.949 63.158 0.00 0.00 0.00 3.24
1113 4449 1.152139 GAGGGGAGGGGATGGAGAG 60.152 68.421 0.00 0.00 0.00 3.20
1114 4450 3.037715 GAGGGGAGGGGATGGAGA 58.962 66.667 0.00 0.00 0.00 3.71
1115 4451 2.525381 CGAGGGGAGGGGATGGAG 60.525 72.222 0.00 0.00 0.00 3.86
1116 4452 4.880426 GCGAGGGGAGGGGATGGA 62.880 72.222 0.00 0.00 0.00 3.41
1135 4471 1.303806 TAAAGCAAGGGAACGGGGC 60.304 57.895 0.00 0.00 0.00 5.80
1140 4476 2.095008 GCTGAAGCTAAAGCAAGGGAAC 60.095 50.000 14.11 0.00 45.16 3.62
1141 4477 2.162681 GCTGAAGCTAAAGCAAGGGAA 58.837 47.619 14.11 0.00 45.16 3.97
1142 4478 1.073763 TGCTGAAGCTAAAGCAAGGGA 59.926 47.619 18.24 0.00 46.06 4.20
1209 4545 0.823769 TAGCTGCTCCGTCGATGGAT 60.824 55.000 26.29 13.85 37.41 3.41
1212 4548 1.655654 CGTAGCTGCTCCGTCGATG 60.656 63.158 4.91 0.00 0.00 3.84
1213 4549 2.716244 CGTAGCTGCTCCGTCGAT 59.284 61.111 4.91 0.00 0.00 3.59
1226 4562 1.662026 GGCCAAAACTGAAACGCGTAG 60.662 52.381 14.46 9.46 0.00 3.51
1227 4563 0.308376 GGCCAAAACTGAAACGCGTA 59.692 50.000 14.46 0.00 0.00 4.42
1228 4564 1.065109 GGCCAAAACTGAAACGCGT 59.935 52.632 5.58 5.58 0.00 6.01
1229 4565 0.589223 TAGGCCAAAACTGAAACGCG 59.411 50.000 5.01 3.53 0.00 6.01
1231 4567 2.031157 CAGGTAGGCCAAAACTGAAACG 60.031 50.000 16.21 0.00 37.19 3.60
1232 4568 3.219281 TCAGGTAGGCCAAAACTGAAAC 58.781 45.455 20.29 0.00 35.45 2.78
1233 4569 3.586470 TCAGGTAGGCCAAAACTGAAA 57.414 42.857 20.29 2.50 35.45 2.69
1234 4570 3.806949 ATCAGGTAGGCCAAAACTGAA 57.193 42.857 24.68 12.01 41.03 3.02
1235 4571 4.919774 TTATCAGGTAGGCCAAAACTGA 57.080 40.909 23.54 23.54 41.79 3.41
1236 4572 5.297776 CAGATTATCAGGTAGGCCAAAACTG 59.702 44.000 15.31 15.31 37.19 3.16
1237 4573 5.191722 TCAGATTATCAGGTAGGCCAAAACT 59.808 40.000 5.01 0.00 37.19 2.66
1238 4574 5.437060 TCAGATTATCAGGTAGGCCAAAAC 58.563 41.667 5.01 0.00 37.19 2.43
1239 4575 5.708736 TCAGATTATCAGGTAGGCCAAAA 57.291 39.130 5.01 0.00 37.19 2.44
1240 4576 5.708736 TTCAGATTATCAGGTAGGCCAAA 57.291 39.130 5.01 0.00 37.19 3.28
1241 4577 5.912149 ATTCAGATTATCAGGTAGGCCAA 57.088 39.130 5.01 0.00 37.19 4.52
1242 4578 6.014242 CACTATTCAGATTATCAGGTAGGCCA 60.014 42.308 5.01 0.00 37.19 5.36
1243 4579 6.014156 ACACTATTCAGATTATCAGGTAGGCC 60.014 42.308 0.00 0.00 0.00 5.19
1244 4580 6.998802 ACACTATTCAGATTATCAGGTAGGC 58.001 40.000 0.00 0.00 0.00 3.93
1245 4581 8.091449 GGAACACTATTCAGATTATCAGGTAGG 58.909 40.741 0.00 0.00 0.00 3.18
1246 4582 8.865090 AGGAACACTATTCAGATTATCAGGTAG 58.135 37.037 0.00 0.00 0.00 3.18
1247 4583 8.642432 CAGGAACACTATTCAGATTATCAGGTA 58.358 37.037 0.00 0.00 0.00 3.08
1248 4584 7.126421 ACAGGAACACTATTCAGATTATCAGGT 59.874 37.037 0.00 0.00 0.00 4.00
1249 4585 7.504403 ACAGGAACACTATTCAGATTATCAGG 58.496 38.462 0.00 0.00 0.00 3.86
1250 4586 8.954950 AACAGGAACACTATTCAGATTATCAG 57.045 34.615 0.00 0.00 0.00 2.90
1251 4587 7.706607 CGAACAGGAACACTATTCAGATTATCA 59.293 37.037 0.00 0.00 0.00 2.15
1252 4588 7.707035 ACGAACAGGAACACTATTCAGATTATC 59.293 37.037 0.00 0.00 0.00 1.75
1253 4589 7.556844 ACGAACAGGAACACTATTCAGATTAT 58.443 34.615 0.00 0.00 0.00 1.28
1254 4590 6.931838 ACGAACAGGAACACTATTCAGATTA 58.068 36.000 0.00 0.00 0.00 1.75
1255 4591 5.794894 ACGAACAGGAACACTATTCAGATT 58.205 37.500 0.00 0.00 0.00 2.40
1256 4592 5.186021 AGACGAACAGGAACACTATTCAGAT 59.814 40.000 0.00 0.00 0.00 2.90
1257 4593 4.523173 AGACGAACAGGAACACTATTCAGA 59.477 41.667 0.00 0.00 0.00 3.27
1258 4594 4.623167 CAGACGAACAGGAACACTATTCAG 59.377 45.833 0.00 0.00 0.00 3.02
1259 4595 4.038763 ACAGACGAACAGGAACACTATTCA 59.961 41.667 0.00 0.00 0.00 2.57
1260 4596 4.386049 CACAGACGAACAGGAACACTATTC 59.614 45.833 0.00 0.00 0.00 1.75
1261 4597 4.307432 CACAGACGAACAGGAACACTATT 58.693 43.478 0.00 0.00 0.00 1.73
1262 4598 3.861131 GCACAGACGAACAGGAACACTAT 60.861 47.826 0.00 0.00 0.00 2.12
1263 4599 2.545113 GCACAGACGAACAGGAACACTA 60.545 50.000 0.00 0.00 0.00 2.74
1264 4600 1.806623 GCACAGACGAACAGGAACACT 60.807 52.381 0.00 0.00 0.00 3.55
1265 4601 0.582005 GCACAGACGAACAGGAACAC 59.418 55.000 0.00 0.00 0.00 3.32
1266 4602 0.464036 AGCACAGACGAACAGGAACA 59.536 50.000 0.00 0.00 0.00 3.18
1287 4623 6.917533 ACAAACTGAAGGATGAGCATAAAAG 58.082 36.000 0.00 0.00 0.00 2.27
1290 4626 5.880332 GGTACAAACTGAAGGATGAGCATAA 59.120 40.000 0.00 0.00 0.00 1.90
1301 4637 6.590357 CGTAATTCACTGGTACAAACTGAAG 58.410 40.000 0.00 0.00 38.70 3.02
1311 4678 3.786516 TGATCGCGTAATTCACTGGTA 57.213 42.857 5.77 0.00 0.00 3.25
1315 4682 5.447279 GGTGAAATTGATCGCGTAATTCACT 60.447 40.000 25.42 12.16 31.99 3.41
1323 4690 1.086696 CCTGGTGAAATTGATCGCGT 58.913 50.000 5.77 0.00 0.00 6.01
1338 4710 3.199508 AGAATCTGAGGATGTTCACCTGG 59.800 47.826 0.00 0.00 37.93 4.45
1348 4720 2.099921 CGAACCACGAGAATCTGAGGAT 59.900 50.000 0.00 0.00 45.77 3.24
1381 4753 3.764160 GATCCGCTGGGGCAAGGAG 62.764 68.421 5.77 0.00 38.60 3.69
1382 4754 3.797353 GATCCGCTGGGGCAAGGA 61.797 66.667 5.77 0.00 38.60 3.36
1383 4755 4.883354 GGATCCGCTGGGGCAAGG 62.883 72.222 5.77 0.00 38.60 3.61
1480 4856 0.035725 TCCACCATGAGCAAGCAGAG 60.036 55.000 0.00 0.00 0.00 3.35
1619 5002 2.279935 TGGCGATGTGGGTTTTACTT 57.720 45.000 0.00 0.00 0.00 2.24
1690 5073 5.469760 CGGCATTATTGTCATAGGATTGTGA 59.530 40.000 0.00 0.00 0.00 3.58
1713 5099 1.866853 GCAGGGGAAGCTCCAAAACG 61.867 60.000 0.00 0.00 38.64 3.60
1757 5160 1.206849 GAGAAGAAGAGAGGCCACAGG 59.793 57.143 5.01 0.00 0.00 4.00
1765 5168 1.481772 CCTGGCTGGAGAAGAAGAGAG 59.518 57.143 4.05 0.00 38.35 3.20
1769 5172 0.037303 TTGCCTGGCTGGAGAAGAAG 59.963 55.000 21.03 0.00 38.35 2.85
1770 5173 0.478072 TTTGCCTGGCTGGAGAAGAA 59.522 50.000 21.03 0.00 38.35 2.52
1771 5174 0.700564 ATTTGCCTGGCTGGAGAAGA 59.299 50.000 21.03 0.00 38.35 2.87
1772 5175 1.101331 GATTTGCCTGGCTGGAGAAG 58.899 55.000 21.03 0.00 38.35 2.85
1911 5314 0.820226 TGAAGCTGACGATGAGGGAG 59.180 55.000 0.00 0.00 0.00 4.30
2024 5427 2.415168 TCATTCAAAAGCCGTCGTCATC 59.585 45.455 0.00 0.00 0.00 2.92
2026 5429 1.872388 TCATTCAAAAGCCGTCGTCA 58.128 45.000 0.00 0.00 0.00 4.35
2044 5448 5.079689 AGGAAGAAGAGAAGGTCGATTTC 57.920 43.478 0.00 0.00 0.00 2.17
2057 5461 1.336887 CGTCGCAAGGAAGGAAGAAGA 60.337 52.381 0.00 0.00 38.47 2.87
2058 5462 1.071605 CGTCGCAAGGAAGGAAGAAG 58.928 55.000 0.00 0.00 38.47 2.85
2064 5468 1.424493 GAGCATCGTCGCAAGGAAGG 61.424 60.000 1.90 0.00 38.47 3.46
2158 5567 3.064900 ACCATGTTCCTGAGCTTTCTC 57.935 47.619 0.00 0.00 39.78 2.87
2168 5577 1.215423 GGCCTCCAATACCATGTTCCT 59.785 52.381 0.00 0.00 0.00 3.36
2275 5691 6.791303 TGTAAGCTAAAAATAATGGGCGAAG 58.209 36.000 0.00 0.00 0.00 3.79
2329 5752 4.821805 ACTTATCAAACCACACACAAGAGG 59.178 41.667 0.00 0.00 0.00 3.69
2414 5837 8.459911 TGACTAATTTATCACTCCGTCAGATA 57.540 34.615 0.00 0.00 0.00 1.98
2603 6026 3.587797 AGCAATGCACTCATTCAAAGG 57.412 42.857 8.35 0.00 40.74 3.11
2629 6052 2.487934 CAGACACAAACTGGACCAGAG 58.512 52.381 28.56 18.08 35.18 3.35
2630 6053 1.475034 GCAGACACAAACTGGACCAGA 60.475 52.381 28.56 0.00 36.09 3.86
2668 6091 6.040209 TGGCAGTGAATTAATTGCTTTCAT 57.960 33.333 9.93 0.00 36.79 2.57
2709 6132 7.400599 AGAAACGGACAGATATACACAAGTA 57.599 36.000 0.00 0.00 34.10 2.24
2711 6134 8.697846 TTTAGAAACGGACAGATATACACAAG 57.302 34.615 0.00 0.00 0.00 3.16
2712 6135 7.277098 GCTTTAGAAACGGACAGATATACACAA 59.723 37.037 0.00 0.00 0.00 3.33
2713 6136 6.755141 GCTTTAGAAACGGACAGATATACACA 59.245 38.462 0.00 0.00 0.00 3.72
2718 6141 5.258456 TCGCTTTAGAAACGGACAGATAT 57.742 39.130 0.00 0.00 0.00 1.63
2796 6220 9.458374 CAGTTCTTGTGGTTTTATTTTCGTATT 57.542 29.630 0.00 0.00 0.00 1.89
2801 6225 7.566709 CATGCAGTTCTTGTGGTTTTATTTTC 58.433 34.615 0.00 0.00 0.00 2.29
2812 6237 4.227512 TGTTAAGCATGCAGTTCTTGTG 57.772 40.909 21.98 0.00 0.00 3.33
2836 6261 4.515361 GAGATAGATGATGCATGAAGGGG 58.485 47.826 2.46 0.00 0.00 4.79
2842 6272 6.297080 AGTTAGGGAGATAGATGATGCATG 57.703 41.667 2.46 0.00 0.00 4.06
2871 6302 2.698855 TATGCTCAAACTCCTCTGCC 57.301 50.000 0.00 0.00 0.00 4.85
3343 6786 1.179152 TCTCGTCCATTTACTCGGCA 58.821 50.000 0.00 0.00 0.00 5.69
3346 6789 3.001330 GGCATTTCTCGTCCATTTACTCG 59.999 47.826 0.00 0.00 0.00 4.18
3358 6801 1.640428 TAACAGCTCGGCATTTCTCG 58.360 50.000 0.00 0.00 0.00 4.04
3377 6820 8.522830 TGTTTCTGTCTTCTCAAATCAGTTTTT 58.477 29.630 0.00 0.00 0.00 1.94
3378 6821 8.055279 TGTTTCTGTCTTCTCAAATCAGTTTT 57.945 30.769 0.00 0.00 0.00 2.43
3404 6847 3.070446 TGCTTTGAGGAAAGTCTCGGTAA 59.930 43.478 0.00 0.00 40.77 2.85
3408 6851 3.134458 ACTTGCTTTGAGGAAAGTCTCG 58.866 45.455 0.00 0.00 40.77 4.04
3455 6898 8.035394 ACAAATTATAGGGTGATCAGCGTATAG 58.965 37.037 30.60 24.84 40.71 1.31
3457 6900 6.769512 ACAAATTATAGGGTGATCAGCGTAT 58.230 36.000 31.29 31.29 41.13 3.06
3460 6903 6.455647 TCTACAAATTATAGGGTGATCAGCG 58.544 40.000 18.14 4.20 0.00 5.18
3475 6920 7.363268 GCTCCAGACCAAAATGATCTACAAATT 60.363 37.037 0.00 0.00 0.00 1.82
3604 7049 6.721668 TCATAGTAACATATACCAGCTCTGCT 59.278 38.462 0.00 0.00 40.77 4.24
3643 7088 9.376075 GTGCTACTCACATAGAAATATGCATAT 57.624 33.333 13.63 13.63 44.98 1.78
3644 7089 8.763049 GTGCTACTCACATAGAAATATGCATA 57.237 34.615 9.27 9.27 44.98 3.14
3645 7090 7.664082 GTGCTACTCACATAGAAATATGCAT 57.336 36.000 3.79 3.79 44.98 3.96
3742 7187 5.095490 GGTTGGTTTCTGATATCGCTTTTG 58.905 41.667 0.00 0.00 0.00 2.44
3803 7248 6.386654 TCGGATAAATTGCTTGTTTCCTTTC 58.613 36.000 0.00 0.00 0.00 2.62
3804 7249 6.339587 TCGGATAAATTGCTTGTTTCCTTT 57.660 33.333 0.00 0.00 0.00 3.11
3805 7250 5.975693 TCGGATAAATTGCTTGTTTCCTT 57.024 34.783 0.00 0.00 0.00 3.36
3806 7251 5.476945 AGTTCGGATAAATTGCTTGTTTCCT 59.523 36.000 0.00 0.00 0.00 3.36
3807 7252 5.572896 CAGTTCGGATAAATTGCTTGTTTCC 59.427 40.000 0.00 0.00 0.00 3.13
3826 7271 6.690194 ATGGTTCATCAGCTAATTCAGTTC 57.310 37.500 0.00 0.00 0.00 3.01
3846 7291 7.889589 TCACGATATAAGAAGTGCATAATGG 57.110 36.000 0.00 0.00 34.84 3.16
3857 7302 6.195798 CGACGTTGTGAATCACGATATAAGAA 59.804 38.462 6.60 0.00 37.14 2.52
3990 7435 0.605319 TGGCTACCGTTTGCTGGAAG 60.605 55.000 0.00 0.00 0.00 3.46
4167 7612 0.732880 CATCACAGACGACACCGACC 60.733 60.000 0.00 0.00 39.50 4.79
4229 7674 5.422145 GCTAATTTTGGCATGGACTGAATT 58.578 37.500 0.00 0.00 34.50 2.17
4230 7675 4.141869 GGCTAATTTTGGCATGGACTGAAT 60.142 41.667 0.00 0.00 36.26 2.57
4231 7676 3.195396 GGCTAATTTTGGCATGGACTGAA 59.805 43.478 0.00 0.00 36.26 3.02
4233 7678 2.159057 GGGCTAATTTTGGCATGGACTG 60.159 50.000 6.72 0.00 36.26 3.51
4245 7731 0.106519 AGCGATGCAGGGGCTAATTT 60.107 50.000 7.11 0.00 41.91 1.82
4263 7749 9.195411 GAGATACTAGAATGAGCAGAATTTCAG 57.805 37.037 0.00 0.00 0.00 3.02
4265 7751 7.148820 GCGAGATACTAGAATGAGCAGAATTTC 60.149 40.741 0.00 0.00 0.00 2.17
4308 7794 8.689069 GTTCAGTACTTGAAGTAAAGTAGTTCG 58.311 37.037 6.63 0.00 46.09 3.95
4318 7804 6.295123 GGGTGAGATGTTCAGTACTTGAAGTA 60.295 42.308 0.00 0.00 46.09 2.24
4319 7805 5.511545 GGGTGAGATGTTCAGTACTTGAAGT 60.512 44.000 2.37 2.37 46.09 3.01
4351 7837 6.305272 TCAAGTATGAGCAGAAATCTTCCT 57.695 37.500 0.00 0.00 0.00 3.36
4377 7863 4.045636 ACAAATGCTTCTGTGTTTCCAC 57.954 40.909 0.00 0.00 42.19 4.02
4404 7890 2.172293 TCCTGCCAATGCCAAACTTTTT 59.828 40.909 0.00 0.00 36.33 1.94
4582 8068 0.884704 TTGTTGGCTTCGGACAGAGC 60.885 55.000 0.00 0.00 32.76 4.09
4605 8091 2.613223 GCTCCAAGAGTGGGTTGTACTC 60.613 54.545 0.00 0.00 46.01 2.59
4606 8092 1.348036 GCTCCAAGAGTGGGTTGTACT 59.652 52.381 0.00 0.00 46.01 2.73
4607 8093 1.348036 AGCTCCAAGAGTGGGTTGTAC 59.652 52.381 0.00 0.00 46.01 2.90
4608 8094 1.347707 CAGCTCCAAGAGTGGGTTGTA 59.652 52.381 0.00 0.00 46.01 2.41
4613 8099 1.197430 ACTCCAGCTCCAAGAGTGGG 61.197 60.000 4.81 5.72 46.01 4.61
4616 8102 3.107402 TGATACTCCAGCTCCAAGAGT 57.893 47.619 9.46 9.46 43.17 3.24
4620 8106 4.263462 ACAAACATGATACTCCAGCTCCAA 60.263 41.667 0.00 0.00 0.00 3.53
4657 8143 2.545113 CCTATCAACTGCAATGCCATGC 60.545 50.000 1.53 4.00 46.58 4.06
4666 8161 1.281867 CCTTCCACCCTATCAACTGCA 59.718 52.381 0.00 0.00 0.00 4.41
4996 8494 4.822350 AGAAGGAAAGGGAGAAAGAAAACG 59.178 41.667 0.00 0.00 0.00 3.60
5010 8508 5.468409 GTGTCAAGAGGAAGAAGAAGGAAAG 59.532 44.000 0.00 0.00 0.00 2.62
5049 8559 0.256464 ACCACTCAACCCAACGGAAA 59.744 50.000 0.00 0.00 0.00 3.13
5051 8561 1.147376 CACCACTCAACCCAACGGA 59.853 57.895 0.00 0.00 0.00 4.69
5052 8562 2.551912 GCACCACTCAACCCAACGG 61.552 63.158 0.00 0.00 0.00 4.44
5053 8563 0.250124 TAGCACCACTCAACCCAACG 60.250 55.000 0.00 0.00 0.00 4.10
5142 9158 4.443063 TGTGTGTGTTTTCGATACGAGAAG 59.557 41.667 0.00 0.00 37.14 2.85
5159 10040 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5160 10041 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5161 10042 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5162 10043 1.128507 GAGTGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
5163 10044 1.270571 TGAGTGTGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
5164 10045 1.128507 GTGAGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
5165 10046 1.438651 GTGAGTGTGTGTGTGTGTGT 58.561 50.000 0.00 0.00 0.00 3.72
5168 10049 0.923403 CTCGTGAGTGTGTGTGTGTG 59.077 55.000 0.00 0.00 0.00 3.82
5181 10062 1.509644 AACTGTACCGACGCTCGTGA 61.510 55.000 0.00 0.00 38.40 4.35
5271 10152 0.745845 CGGACCAGCTCCATTTCCTG 60.746 60.000 0.00 0.00 39.39 3.86
5356 10241 4.165372 AGGGACCAAGTCTGTACTTTTTGA 59.835 41.667 0.00 0.00 43.60 2.69
5592 10480 2.878406 GGTCCAATATGCTTACATGCGT 59.122 45.455 0.00 0.00 37.04 5.24
5668 10559 4.887190 ACCGCCACAAAACCGCCT 62.887 61.111 0.00 0.00 0.00 5.52
5696 10587 5.887035 CCTAAACCATATTTTGACCCCGTTA 59.113 40.000 0.00 0.00 0.00 3.18
5834 10725 9.927081 ATCCTTGTTCCATTAGATCTTTTACAT 57.073 29.630 0.00 0.00 0.00 2.29
5835 10726 9.753674 AATCCTTGTTCCATTAGATCTTTTACA 57.246 29.630 0.00 0.00 0.00 2.41
5837 10728 9.109393 CGAATCCTTGTTCCATTAGATCTTTTA 57.891 33.333 0.00 0.00 0.00 1.52
5838 10729 7.611855 ACGAATCCTTGTTCCATTAGATCTTTT 59.388 33.333 0.00 0.00 0.00 2.27
5839 10730 7.112779 ACGAATCCTTGTTCCATTAGATCTTT 58.887 34.615 0.00 0.00 0.00 2.52
5840 10731 6.653989 ACGAATCCTTGTTCCATTAGATCTT 58.346 36.000 0.00 0.00 0.00 2.40
5841 10732 6.127054 TGACGAATCCTTGTTCCATTAGATCT 60.127 38.462 0.00 0.00 0.00 2.75
5887 10782 0.847670 TTAACGAGTTGTGTGCGACG 59.152 50.000 0.00 0.00 34.22 5.12
5908 10803 1.591248 CTCGATCGCAAACGGTTTTG 58.409 50.000 11.09 0.00 44.42 2.44
5924 10819 1.081242 GTGTGCAATGGTTGGCTCG 60.081 57.895 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.