Multiple sequence alignment - TraesCS1D01G327500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G327500 chr1D 100.000 7938 0 0 1 7938 419716282 419724219 0.000000e+00 14659.0
1 TraesCS1D01G327500 chr1D 97.786 858 15 3 3279 4134 33694836 33695691 0.000000e+00 1476.0
2 TraesCS1D01G327500 chr1D 96.770 867 17 5 3279 4134 476766299 476767165 0.000000e+00 1435.0
3 TraesCS1D01G327500 chr1D 87.709 537 49 3 1940 2461 419720416 419720950 1.890000e-170 610.0
4 TraesCS1D01G327500 chr1D 86.444 568 43 14 2700 3247 419718131 419718684 6.860000e-165 592.0
5 TraesCS1D01G327500 chr1D 86.444 568 43 14 1850 2403 419718981 419719528 6.860000e-165 592.0
6 TraesCS1D01G327500 chr1D 88.367 490 39 7 2777 3259 419720416 419720894 2.480000e-159 573.0
7 TraesCS1D01G327500 chr1D 95.798 238 9 1 7650 7886 449518105 449518342 4.490000e-102 383.0
8 TraesCS1D01G327500 chr1D 90.756 238 18 4 2463 2697 419721001 419721237 1.660000e-81 315.0
9 TraesCS1D01G327500 chr1D 77.941 136 22 6 130 259 224400366 224400499 2.370000e-10 78.7
10 TraesCS1D01G327500 chr1B 93.638 2169 63 22 5252 7377 566829727 566831863 0.000000e+00 3171.0
11 TraesCS1D01G327500 chr1B 91.549 1775 84 26 729 2461 566823271 566825021 0.000000e+00 2386.0
12 TraesCS1D01G327500 chr1B 94.834 813 37 4 2463 3274 566826110 566826918 0.000000e+00 1264.0
13 TraesCS1D01G327500 chr1B 89.543 832 82 5 4135 4962 566824486 566825316 0.000000e+00 1050.0
14 TraesCS1D01G327500 chr1B 87.623 816 64 16 2463 3257 566825072 566825871 0.000000e+00 913.0
15 TraesCS1D01G327500 chr1B 87.093 829 64 16 2463 3259 566827009 566827826 0.000000e+00 898.0
16 TraesCS1D01G327500 chr1B 91.833 551 41 3 1853 2403 566825315 566825861 0.000000e+00 765.0
17 TraesCS1D01G327500 chr1B 88.455 615 50 6 1850 2448 566827260 566827869 0.000000e+00 723.0
18 TraesCS1D01G327500 chr1B 86.332 578 52 7 2700 3259 566824397 566824965 8.810000e-169 604.0
19 TraesCS1D01G327500 chr1B 92.114 317 24 1 129 445 566822857 566823172 5.650000e-121 446.0
20 TraesCS1D01G327500 chr1B 89.623 106 11 0 21 126 566822710 566822815 1.390000e-27 135.0
21 TraesCS1D01G327500 chr1B 93.103 58 0 1 7884 7937 566831854 566831911 1.840000e-11 82.4
22 TraesCS1D01G327500 chr7D 90.576 2186 183 15 4189 6370 138285165 138287331 0.000000e+00 2874.0
23 TraesCS1D01G327500 chr7D 97.783 857 16 2 3279 4134 570406457 570407311 0.000000e+00 1474.0
24 TraesCS1D01G327500 chr7D 96.980 861 14 6 3285 4134 616191595 616190736 0.000000e+00 1435.0
25 TraesCS1D01G327500 chr7D 96.086 511 19 1 7377 7886 95569658 95570168 0.000000e+00 832.0
26 TraesCS1D01G327500 chr7D 95.781 237 9 1 7650 7885 76473131 76473367 1.620000e-101 381.0
27 TraesCS1D01G327500 chr7D 89.030 237 23 3 2463 2697 138285687 138285922 2.800000e-74 291.0
28 TraesCS1D01G327500 chr1A 88.826 2282 218 23 4189 6458 577937495 577939751 0.000000e+00 2767.0
29 TraesCS1D01G327500 chr5B 89.732 2162 196 13 4189 6340 508292004 508289859 0.000000e+00 2739.0
30 TraesCS1D01G327500 chr5B 85.537 484 51 7 1994 2459 508292005 508291523 9.260000e-134 488.0
31 TraesCS1D01G327500 chr5B 89.362 235 23 2 2463 2695 508291470 508291236 2.170000e-75 294.0
32 TraesCS1D01G327500 chr5B 81.111 90 17 0 20 109 206801620 206801709 1.100000e-08 73.1
33 TraesCS1D01G327500 chr4A 88.934 2232 218 17 4189 6415 10221332 10219125 0.000000e+00 2726.0
34 TraesCS1D01G327500 chr4A 92.520 869 48 10 3279 4134 504847915 504848779 0.000000e+00 1229.0
35 TraesCS1D01G327500 chr4A 76.402 428 77 17 6469 6884 741138013 741137598 8.070000e-50 209.0
36 TraesCS1D01G327500 chr4A 91.071 112 10 0 6764 6875 744022330 744022441 1.380000e-32 152.0
37 TraesCS1D01G327500 chr3A 88.056 2227 227 23 4189 6408 329497501 329495307 0.000000e+00 2603.0
38 TraesCS1D01G327500 chr3A 85.396 493 55 6 1985 2460 575406715 575406223 5.530000e-136 496.0
39 TraesCS1D01G327500 chr3A 82.932 498 59 12 1981 2461 329497519 329497031 7.360000e-115 425.0
40 TraesCS1D01G327500 chr3A 93.061 245 13 3 7383 7623 681124386 681124142 9.800000e-94 355.0
41 TraesCS1D01G327500 chr3A 89.030 237 23 3 2463 2697 575406171 575405936 2.800000e-74 291.0
42 TraesCS1D01G327500 chr3A 87.288 236 26 3 2463 2697 329496980 329496748 4.720000e-67 267.0
43 TraesCS1D01G327500 chr3A 92.537 67 4 1 1690 1756 428129 428194 2.360000e-15 95.3
44 TraesCS1D01G327500 chr3D 91.311 1404 108 10 4997 6397 355752888 355751496 0.000000e+00 1905.0
45 TraesCS1D01G327500 chr3D 96.540 867 18 6 3279 4134 436630637 436629772 0.000000e+00 1424.0
46 TraesCS1D01G327500 chr3D 96.287 835 20 2 3311 4134 379009074 379008240 0.000000e+00 1360.0
47 TraesCS1D01G327500 chr3D 98.187 662 11 1 3473 4134 14402932 14402272 0.000000e+00 1155.0
48 TraesCS1D01G327500 chr3D 89.529 850 79 8 4944 5790 228212722 228213564 0.000000e+00 1068.0
49 TraesCS1D01G327500 chr3D 85.225 846 114 10 5516 6357 141657205 141656367 0.000000e+00 859.0
50 TraesCS1D01G327500 chr3D 97.426 505 10 3 7383 7884 585011377 585010873 0.000000e+00 857.0
51 TraesCS1D01G327500 chr3D 92.913 508 10 3 7383 7888 437490380 437489897 0.000000e+00 715.0
52 TraesCS1D01G327500 chr3D 92.537 67 5 0 1690 1756 3330120 3330186 6.560000e-16 97.1
53 TraesCS1D01G327500 chr3B 87.442 1513 149 17 4880 6362 344334855 344336356 0.000000e+00 1703.0
54 TraesCS1D01G327500 chr3B 93.089 246 12 3 7383 7623 133194080 133193835 9.800000e-94 355.0
55 TraesCS1D01G327500 chr2B 88.947 1339 132 12 4189 5522 569978504 569979831 0.000000e+00 1639.0
56 TraesCS1D01G327500 chr2B 86.777 484 45 9 1993 2461 569978502 569978981 9.130000e-144 521.0
57 TraesCS1D01G327500 chr2D 96.770 867 11 7 3279 4134 285443014 285443874 0.000000e+00 1430.0
58 TraesCS1D01G327500 chr2D 95.935 246 8 2 7650 7893 36217304 36217059 1.610000e-106 398.0
59 TraesCS1D01G327500 chr4D 97.070 819 13 5 3327 4134 332020626 332019808 0.000000e+00 1369.0
60 TraesCS1D01G327500 chr4D 97.053 509 12 3 7383 7888 273155762 273155254 0.000000e+00 854.0
61 TraesCS1D01G327500 chr4D 96.436 505 17 1 7383 7886 222689339 222689843 0.000000e+00 832.0
62 TraesCS1D01G327500 chr4D 94.851 505 24 2 7383 7885 455284786 455285290 0.000000e+00 787.0
63 TraesCS1D01G327500 chr4D 88.843 484 37 6 1994 2461 372182186 372182668 5.340000e-161 579.0
64 TraesCS1D01G327500 chr4D 90.000 430 33 4 2837 3259 372182186 372182612 1.510000e-151 547.0
65 TraesCS1D01G327500 chr4D 88.186 237 25 3 2463 2697 458978769 458979004 6.070000e-71 279.0
66 TraesCS1D01G327500 chr5A 93.364 874 34 14 3278 4134 12683570 12684436 0.000000e+00 1271.0
67 TraesCS1D01G327500 chr5A 86.071 481 52 5 1995 2460 356102991 356103471 3.310000e-138 503.0
68 TraesCS1D01G327500 chr5A 83.333 90 15 0 20 109 245434977 245434888 5.100000e-12 84.2
69 TraesCS1D01G327500 chrUn 90.628 939 84 4 4179 5116 10263764 10264699 0.000000e+00 1243.0
70 TraesCS1D01G327500 chrUn 89.670 455 37 5 2828 3275 10263761 10264212 8.940000e-159 571.0
71 TraesCS1D01G327500 chrUn 87.677 495 44 6 1993 2471 10263769 10264262 1.930000e-155 560.0
72 TraesCS1D01G327500 chr7B 88.292 1042 104 9 4193 5226 648693993 648692962 0.000000e+00 1232.0
73 TraesCS1D01G327500 chr7B 87.295 488 33 9 1994 2461 607618021 607617543 1.520000e-146 531.0
74 TraesCS1D01G327500 chr7B 89.948 388 37 1 2870 3257 648693960 648693575 4.280000e-137 499.0
75 TraesCS1D01G327500 chr7B 88.186 237 23 3 2463 2697 648693462 648693229 2.180000e-70 278.0
76 TraesCS1D01G327500 chr6A 91.963 871 51 10 3279 4134 530181341 530180475 0.000000e+00 1203.0
77 TraesCS1D01G327500 chr6A 73.750 480 75 23 1993 2459 600290004 600290445 2.990000e-29 141.0
78 TraesCS1D01G327500 chr5D 96.627 504 15 2 7383 7885 515248312 515248814 0.000000e+00 835.0
79 TraesCS1D01G327500 chr5D 87.110 481 43 7 1996 2461 540243382 540242906 1.960000e-145 527.0
80 TraesCS1D01G327500 chr5D 87.943 423 40 6 2841 3257 540243380 540242963 9.260000e-134 488.0
81 TraesCS1D01G327500 chr4B 86.957 483 45 9 1994 2460 456917108 456917588 1.960000e-145 527.0
82 TraesCS1D01G327500 chr2A 86.977 430 49 4 2833 3257 749908883 749909310 2.000000e-130 477.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G327500 chr1D 419716282 419724219 7937 False 14659.000000 14659 100.000000 1 7938 1 chr1D.!!$F3 7937
1 TraesCS1D01G327500 chr1D 33694836 33695691 855 False 1476.000000 1476 97.786000 3279 4134 1 chr1D.!!$F1 855
2 TraesCS1D01G327500 chr1D 476766299 476767165 866 False 1435.000000 1435 96.770000 3279 4134 1 chr1D.!!$F5 855
3 TraesCS1D01G327500 chr1D 419718131 419721237 3106 False 536.400000 610 87.944000 1850 3259 5 chr1D.!!$F6 1409
4 TraesCS1D01G327500 chr1B 566822710 566831911 9201 False 1036.450000 3171 90.478333 21 7937 12 chr1B.!!$F1 7916
5 TraesCS1D01G327500 chr7D 138285165 138287331 2166 False 1582.500000 2874 89.803000 2463 6370 2 chr7D.!!$F4 3907
6 TraesCS1D01G327500 chr7D 570406457 570407311 854 False 1474.000000 1474 97.783000 3279 4134 1 chr7D.!!$F3 855
7 TraesCS1D01G327500 chr7D 616190736 616191595 859 True 1435.000000 1435 96.980000 3285 4134 1 chr7D.!!$R1 849
8 TraesCS1D01G327500 chr7D 95569658 95570168 510 False 832.000000 832 96.086000 7377 7886 1 chr7D.!!$F2 509
9 TraesCS1D01G327500 chr1A 577937495 577939751 2256 False 2767.000000 2767 88.826000 4189 6458 1 chr1A.!!$F1 2269
10 TraesCS1D01G327500 chr5B 508289859 508292005 2146 True 1173.666667 2739 88.210333 1994 6340 3 chr5B.!!$R1 4346
11 TraesCS1D01G327500 chr4A 10219125 10221332 2207 True 2726.000000 2726 88.934000 4189 6415 1 chr4A.!!$R1 2226
12 TraesCS1D01G327500 chr4A 504847915 504848779 864 False 1229.000000 1229 92.520000 3279 4134 1 chr4A.!!$F1 855
13 TraesCS1D01G327500 chr3A 329495307 329497519 2212 True 1098.333333 2603 86.092000 1981 6408 3 chr3A.!!$R2 4427
14 TraesCS1D01G327500 chr3A 575405936 575406715 779 True 393.500000 496 87.213000 1985 2697 2 chr3A.!!$R3 712
15 TraesCS1D01G327500 chr3D 355751496 355752888 1392 True 1905.000000 1905 91.311000 4997 6397 1 chr3D.!!$R3 1400
16 TraesCS1D01G327500 chr3D 436629772 436630637 865 True 1424.000000 1424 96.540000 3279 4134 1 chr3D.!!$R5 855
17 TraesCS1D01G327500 chr3D 379008240 379009074 834 True 1360.000000 1360 96.287000 3311 4134 1 chr3D.!!$R4 823
18 TraesCS1D01G327500 chr3D 14402272 14402932 660 True 1155.000000 1155 98.187000 3473 4134 1 chr3D.!!$R1 661
19 TraesCS1D01G327500 chr3D 228212722 228213564 842 False 1068.000000 1068 89.529000 4944 5790 1 chr3D.!!$F2 846
20 TraesCS1D01G327500 chr3D 141656367 141657205 838 True 859.000000 859 85.225000 5516 6357 1 chr3D.!!$R2 841
21 TraesCS1D01G327500 chr3D 585010873 585011377 504 True 857.000000 857 97.426000 7383 7884 1 chr3D.!!$R7 501
22 TraesCS1D01G327500 chr3B 344334855 344336356 1501 False 1703.000000 1703 87.442000 4880 6362 1 chr3B.!!$F1 1482
23 TraesCS1D01G327500 chr2B 569978502 569979831 1329 False 1080.000000 1639 87.862000 1993 5522 2 chr2B.!!$F1 3529
24 TraesCS1D01G327500 chr2D 285443014 285443874 860 False 1430.000000 1430 96.770000 3279 4134 1 chr2D.!!$F1 855
25 TraesCS1D01G327500 chr4D 332019808 332020626 818 True 1369.000000 1369 97.070000 3327 4134 1 chr4D.!!$R2 807
26 TraesCS1D01G327500 chr4D 273155254 273155762 508 True 854.000000 854 97.053000 7383 7888 1 chr4D.!!$R1 505
27 TraesCS1D01G327500 chr4D 222689339 222689843 504 False 832.000000 832 96.436000 7383 7886 1 chr4D.!!$F1 503
28 TraesCS1D01G327500 chr4D 455284786 455285290 504 False 787.000000 787 94.851000 7383 7885 1 chr4D.!!$F2 502
29 TraesCS1D01G327500 chr5A 12683570 12684436 866 False 1271.000000 1271 93.364000 3278 4134 1 chr5A.!!$F1 856
30 TraesCS1D01G327500 chrUn 10263761 10264699 938 False 791.333333 1243 89.325000 1993 5116 3 chrUn.!!$F1 3123
31 TraesCS1D01G327500 chr7B 648692962 648693993 1031 True 669.666667 1232 88.808667 2463 5226 3 chr7B.!!$R2 2763
32 TraesCS1D01G327500 chr6A 530180475 530181341 866 True 1203.000000 1203 91.963000 3279 4134 1 chr6A.!!$R1 855
33 TraesCS1D01G327500 chr5D 515248312 515248814 502 False 835.000000 835 96.627000 7383 7885 1 chr5D.!!$F1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 563 0.105039 GAGTGGAATGGAGGCTACGG 59.895 60.000 0.00 0.0 0.00 4.02 F
607 647 0.163146 GCGCTCTCCGTTTGTTGTAC 59.837 55.000 0.00 0.0 39.71 2.90 F
669 709 0.179084 CGTGTGTGTGAAGAGGTGGT 60.179 55.000 0.00 0.0 0.00 4.16 F
729 769 0.382515 GAGCACCCTACACTAGCGAG 59.617 60.000 0.00 0.0 0.00 5.03 F
1597 1651 0.391263 GAACCGGTCGAGAATGGCTT 60.391 55.000 8.04 0.0 0.00 4.35 F
1599 1653 0.460311 ACCGGTCGAGAATGGCTTAG 59.540 55.000 0.00 0.0 0.00 2.18 F
1666 1720 0.662619 TGCTTTGCCTTGACGAGTTG 59.337 50.000 0.00 0.0 0.00 3.16 F
1677 1731 1.202371 TGACGAGTTGCTTCTTCACGT 60.202 47.619 0.00 0.0 35.31 4.49 F
1682 1736 1.532868 AGTTGCTTCTTCACGTCATGC 59.467 47.619 0.00 0.0 0.00 4.06 F
5202 7713 2.042639 GCATGTCCCCTGGCCATT 60.043 61.111 5.51 0.0 0.00 3.16 F
6811 9620 0.033504 TTGCCGAGGAGTTCAGTGTC 59.966 55.000 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 1706 0.106708 AGAAGCAACTCGTCAAGGCA 59.893 50.000 0.00 0.0 0.00 4.75 R
1666 1720 1.291877 ACCGCATGACGTGAAGAAGC 61.292 55.000 0.00 0.0 41.42 3.86 R
1677 1731 2.198827 ATGAACAAGGAACCGCATGA 57.801 45.000 0.00 0.0 0.00 3.07 R
1682 1736 2.351738 GGAAGCAATGAACAAGGAACCG 60.352 50.000 0.00 0.0 0.00 4.44 R
5196 7707 5.420725 AAGTTTTGGGAAGATAAATGGCC 57.579 39.130 0.00 0.0 0.00 5.36 R
5601 8401 5.779922 TCTCACACACTTACCTATGTTCAC 58.220 41.667 0.00 0.0 0.00 3.18 R
5795 8595 6.402222 AGAGGATCAGTACAAACATCTGTTC 58.598 40.000 0.00 0.0 35.45 3.18 R
5965 8767 3.573110 GGGTATCGGTACTTCAGTATGCT 59.427 47.826 5.69 0.0 34.76 3.79 R
6236 9041 4.822685 AATGGCCATTCTTGCAACAATA 57.177 36.364 25.73 0.0 0.00 1.90 R
6892 9701 0.250684 TGTGCTTCGCAATCTTCCCA 60.251 50.000 0.00 0.0 41.47 4.37 R
7708 10556 2.094762 AACCGCCTGATGAACAGTAC 57.905 50.000 0.00 0.0 44.40 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.262420 GGAAATGCTCTAAGCTCGAACA 58.738 45.455 0.11 0.00 42.97 3.18
69 70 3.195610 AGTGATCGAACTTACAGCCATCA 59.804 43.478 0.00 0.00 0.00 3.07
109 110 3.423539 TGGAACATGTTGGAGAAGAGG 57.576 47.619 17.58 0.00 0.00 3.69
113 114 2.907892 ACATGTTGGAGAAGAGGAGGA 58.092 47.619 0.00 0.00 0.00 3.71
115 116 3.652869 ACATGTTGGAGAAGAGGAGGAAA 59.347 43.478 0.00 0.00 0.00 3.13
132 172 4.160635 AAAAATCGCGGCCGCTCG 62.161 61.111 43.60 30.97 39.32 5.03
150 190 2.508439 TCGGTGAAGAATCCGCGC 60.508 61.111 0.00 0.00 45.44 6.86
167 207 1.221840 GCGGGATGGAGAGCTTGAA 59.778 57.895 0.00 0.00 0.00 2.69
171 211 0.465278 GGATGGAGAGCTTGAAGGGC 60.465 60.000 0.00 0.00 0.00 5.19
172 212 0.813210 GATGGAGAGCTTGAAGGGCG 60.813 60.000 0.00 0.00 34.52 6.13
206 246 4.323477 TCGGCGGTGACCCAAAGG 62.323 66.667 7.21 0.00 40.04 3.11
242 282 2.511600 CATTCGGCGGGAGGTGAC 60.512 66.667 7.21 0.00 0.00 3.67
316 356 1.936880 CTCGCATGAGCTCGTCGTC 60.937 63.158 19.95 7.97 39.10 4.20
321 361 1.128724 CATGAGCTCGTCGTCACGTC 61.129 60.000 5.16 0.00 46.76 4.34
335 375 4.489771 CGTCCCCCTCCCATGCAC 62.490 72.222 0.00 0.00 0.00 4.57
352 392 2.355599 CGATGCGAGCCTAGCTGG 60.356 66.667 0.00 0.00 39.88 4.85
356 396 3.922640 GCGAGCCTAGCTGGGAGG 61.923 72.222 22.15 8.69 39.88 4.30
386 426 0.899720 TTCGGTCATTTCTAGCGGGT 59.100 50.000 0.00 0.00 38.33 5.28
412 452 4.270008 ACTGAGTGCTTTAAGGTTTGTGT 58.730 39.130 0.00 0.00 0.00 3.72
437 477 9.716507 GTTATGCATACCAAACAGTAAACATAG 57.283 33.333 5.74 0.00 31.34 2.23
438 478 9.674068 TTATGCATACCAAACAGTAAACATAGA 57.326 29.630 5.74 0.00 31.34 1.98
439 479 7.372451 TGCATACCAAACAGTAAACATAGAC 57.628 36.000 0.00 0.00 0.00 2.59
440 480 6.937465 TGCATACCAAACAGTAAACATAGACA 59.063 34.615 0.00 0.00 0.00 3.41
441 481 7.609918 TGCATACCAAACAGTAAACATAGACAT 59.390 33.333 0.00 0.00 0.00 3.06
442 482 8.458843 GCATACCAAACAGTAAACATAGACATT 58.541 33.333 0.00 0.00 0.00 2.71
443 483 9.988350 CATACCAAACAGTAAACATAGACATTC 57.012 33.333 0.00 0.00 0.00 2.67
444 484 9.733556 ATACCAAACAGTAAACATAGACATTCA 57.266 29.630 0.00 0.00 0.00 2.57
445 485 7.871853 ACCAAACAGTAAACATAGACATTCAC 58.128 34.615 0.00 0.00 0.00 3.18
446 486 7.500892 ACCAAACAGTAAACATAGACATTCACA 59.499 33.333 0.00 0.00 0.00 3.58
447 487 8.017373 CCAAACAGTAAACATAGACATTCACAG 58.983 37.037 0.00 0.00 0.00 3.66
448 488 6.727824 ACAGTAAACATAGACATTCACAGC 57.272 37.500 0.00 0.00 0.00 4.40
449 489 5.348724 ACAGTAAACATAGACATTCACAGCG 59.651 40.000 0.00 0.00 0.00 5.18
450 490 5.348724 CAGTAAACATAGACATTCACAGCGT 59.651 40.000 0.00 0.00 0.00 5.07
451 491 6.530181 CAGTAAACATAGACATTCACAGCGTA 59.470 38.462 0.00 0.00 0.00 4.42
452 492 7.062956 CAGTAAACATAGACATTCACAGCGTAA 59.937 37.037 0.00 0.00 0.00 3.18
453 493 6.795098 AAACATAGACATTCACAGCGTAAA 57.205 33.333 0.00 0.00 0.00 2.01
454 494 6.795098 AACATAGACATTCACAGCGTAAAA 57.205 33.333 0.00 0.00 0.00 1.52
455 495 6.795098 ACATAGACATTCACAGCGTAAAAA 57.205 33.333 0.00 0.00 0.00 1.94
490 530 2.232941 CAGACAGGCCAAATTTGCATCT 59.767 45.455 12.92 6.51 0.00 2.90
491 531 2.232941 AGACAGGCCAAATTTGCATCTG 59.767 45.455 21.38 21.38 0.00 2.90
514 554 0.967380 GGCCTGGTTGAGTGGAATGG 60.967 60.000 0.00 0.00 0.00 3.16
522 562 0.824109 TGAGTGGAATGGAGGCTACG 59.176 55.000 0.00 0.00 0.00 3.51
523 563 0.105039 GAGTGGAATGGAGGCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
547 587 1.580059 CCCCCTTGGCTACTCTAACA 58.420 55.000 0.00 0.00 0.00 2.41
548 588 2.127708 CCCCCTTGGCTACTCTAACAT 58.872 52.381 0.00 0.00 0.00 2.71
549 589 2.509964 CCCCCTTGGCTACTCTAACATT 59.490 50.000 0.00 0.00 0.00 2.71
550 590 3.053619 CCCCCTTGGCTACTCTAACATTT 60.054 47.826 0.00 0.00 0.00 2.32
551 591 4.165372 CCCCCTTGGCTACTCTAACATTTA 59.835 45.833 0.00 0.00 0.00 1.40
553 593 5.998363 CCCCTTGGCTACTCTAACATTTATC 59.002 44.000 0.00 0.00 0.00 1.75
554 594 6.409234 CCCCTTGGCTACTCTAACATTTATCA 60.409 42.308 0.00 0.00 0.00 2.15
555 595 7.054124 CCCTTGGCTACTCTAACATTTATCAA 58.946 38.462 0.00 0.00 0.00 2.57
556 596 7.227512 CCCTTGGCTACTCTAACATTTATCAAG 59.772 40.741 0.00 0.00 0.00 3.02
557 597 7.987458 CCTTGGCTACTCTAACATTTATCAAGA 59.013 37.037 0.00 0.00 31.39 3.02
558 598 9.553064 CTTGGCTACTCTAACATTTATCAAGAT 57.447 33.333 0.00 0.00 31.39 2.40
559 599 9.547753 TTGGCTACTCTAACATTTATCAAGATC 57.452 33.333 0.00 0.00 0.00 2.75
560 600 8.928448 TGGCTACTCTAACATTTATCAAGATCT 58.072 33.333 0.00 0.00 0.00 2.75
577 617 7.855375 TCAAGATCTATATTTATGGGCTGAGG 58.145 38.462 0.00 0.00 0.00 3.86
578 618 6.821616 AGATCTATATTTATGGGCTGAGGG 57.178 41.667 0.00 0.00 0.00 4.30
579 619 5.669447 AGATCTATATTTATGGGCTGAGGGG 59.331 44.000 0.00 0.00 0.00 4.79
580 620 5.036470 TCTATATTTATGGGCTGAGGGGA 57.964 43.478 0.00 0.00 0.00 4.81
581 621 5.613826 TCTATATTTATGGGCTGAGGGGAT 58.386 41.667 0.00 0.00 0.00 3.85
582 622 2.986534 ATTTATGGGCTGAGGGGATG 57.013 50.000 0.00 0.00 0.00 3.51
583 623 0.185901 TTTATGGGCTGAGGGGATGC 59.814 55.000 0.00 0.00 0.00 3.91
584 624 1.719063 TTATGGGCTGAGGGGATGCC 61.719 60.000 0.00 0.00 45.42 4.40
585 625 2.642974 TATGGGCTGAGGGGATGCCT 62.643 60.000 2.19 0.00 45.45 4.75
586 626 2.448542 GGGCTGAGGGGATGCCTA 60.449 66.667 2.19 0.00 45.45 3.93
587 627 2.823758 GGGCTGAGGGGATGCCTAC 61.824 68.421 2.19 0.00 45.45 3.18
588 628 2.423446 GCTGAGGGGATGCCTACG 59.577 66.667 2.19 0.00 0.00 3.51
589 629 2.423446 CTGAGGGGATGCCTACGC 59.577 66.667 2.19 0.00 0.00 4.42
590 630 3.506059 CTGAGGGGATGCCTACGCG 62.506 68.421 3.53 3.53 38.08 6.01
591 631 4.971125 GAGGGGATGCCTACGCGC 62.971 72.222 5.73 0.00 38.08 6.86
593 633 4.971125 GGGGATGCCTACGCGCTC 62.971 72.222 5.73 0.00 38.08 5.03
594 634 3.917760 GGGATGCCTACGCGCTCT 61.918 66.667 5.73 0.00 38.08 4.09
595 635 2.355244 GGATGCCTACGCGCTCTC 60.355 66.667 5.73 0.00 38.08 3.20
596 636 2.355244 GATGCCTACGCGCTCTCC 60.355 66.667 5.73 0.00 38.08 3.71
597 637 4.271816 ATGCCTACGCGCTCTCCG 62.272 66.667 5.73 0.00 38.08 4.63
599 639 4.493747 GCCTACGCGCTCTCCGTT 62.494 66.667 5.73 0.00 39.88 4.44
600 640 2.181021 CCTACGCGCTCTCCGTTT 59.819 61.111 5.73 0.00 39.88 3.60
601 641 2.158959 CCTACGCGCTCTCCGTTTG 61.159 63.158 5.73 0.00 39.88 2.93
602 642 1.443872 CTACGCGCTCTCCGTTTGT 60.444 57.895 5.73 0.00 39.88 2.83
603 643 1.007038 TACGCGCTCTCCGTTTGTT 60.007 52.632 5.73 0.00 39.88 2.83
604 644 1.279527 TACGCGCTCTCCGTTTGTTG 61.280 55.000 5.73 0.00 39.88 3.33
605 645 2.594962 CGCGCTCTCCGTTTGTTGT 61.595 57.895 5.56 0.00 39.71 3.32
606 646 1.279527 CGCGCTCTCCGTTTGTTGTA 61.280 55.000 5.56 0.00 39.71 2.41
607 647 0.163146 GCGCTCTCCGTTTGTTGTAC 59.837 55.000 0.00 0.00 39.71 2.90
608 648 1.493772 CGCTCTCCGTTTGTTGTACA 58.506 50.000 0.00 0.00 0.00 2.90
609 649 2.066262 CGCTCTCCGTTTGTTGTACAT 58.934 47.619 0.00 0.00 0.00 2.29
610 650 3.247442 CGCTCTCCGTTTGTTGTACATA 58.753 45.455 0.00 0.00 0.00 2.29
611 651 3.060363 CGCTCTCCGTTTGTTGTACATAC 59.940 47.826 0.00 0.00 0.00 2.39
612 652 3.991773 GCTCTCCGTTTGTTGTACATACA 59.008 43.478 0.00 1.49 30.92 2.29
613 653 4.630069 GCTCTCCGTTTGTTGTACATACAT 59.370 41.667 0.00 0.00 35.89 2.29
614 654 5.808540 GCTCTCCGTTTGTTGTACATACATA 59.191 40.000 0.00 0.00 35.89 2.29
615 655 6.311935 GCTCTCCGTTTGTTGTACATACATAA 59.688 38.462 0.00 0.46 35.89 1.90
616 656 7.585286 TCTCCGTTTGTTGTACATACATAAC 57.415 36.000 0.00 9.93 35.89 1.89
617 657 6.591062 TCTCCGTTTGTTGTACATACATAACC 59.409 38.462 0.00 0.00 35.89 2.85
618 658 6.465948 TCCGTTTGTTGTACATACATAACCT 58.534 36.000 0.00 0.00 35.89 3.50
619 659 6.935771 TCCGTTTGTTGTACATACATAACCTT 59.064 34.615 0.00 0.00 35.89 3.50
620 660 7.444792 TCCGTTTGTTGTACATACATAACCTTT 59.555 33.333 0.00 0.00 35.89 3.11
621 661 8.077386 CCGTTTGTTGTACATACATAACCTTTT 58.923 33.333 0.00 0.00 35.89 2.27
622 662 9.453325 CGTTTGTTGTACATACATAACCTTTTT 57.547 29.630 0.00 0.00 35.89 1.94
624 664 9.751542 TTTGTTGTACATACATAACCTTTTTGG 57.248 29.630 0.00 0.00 37.71 3.28
625 665 7.371936 TGTTGTACATACATAACCTTTTTGGC 58.628 34.615 0.00 0.00 36.15 4.52
626 666 7.014326 TGTTGTACATACATAACCTTTTTGGCA 59.986 33.333 0.00 0.00 36.15 4.92
627 667 7.526142 TGTACATACATAACCTTTTTGGCAA 57.474 32.000 0.00 0.00 40.22 4.52
628 668 7.952671 TGTACATACATAACCTTTTTGGCAAA 58.047 30.769 8.93 8.93 40.22 3.68
629 669 8.421784 TGTACATACATAACCTTTTTGGCAAAA 58.578 29.630 20.81 20.81 40.22 2.44
630 670 9.262358 GTACATACATAACCTTTTTGGCAAAAA 57.738 29.630 30.03 30.03 40.22 1.94
661 701 3.603190 CGTACGCGTGTGTGTGAA 58.397 55.556 24.59 0.00 39.65 3.18
662 702 1.481260 CGTACGCGTGTGTGTGAAG 59.519 57.895 24.59 0.00 39.65 3.02
663 703 0.931202 CGTACGCGTGTGTGTGAAGA 60.931 55.000 24.59 0.00 39.65 2.87
664 704 0.776451 GTACGCGTGTGTGTGAAGAG 59.224 55.000 24.59 0.00 39.65 2.85
665 705 0.318360 TACGCGTGTGTGTGAAGAGG 60.318 55.000 24.59 0.00 39.65 3.69
666 706 1.591594 CGCGTGTGTGTGAAGAGGT 60.592 57.895 0.00 0.00 0.00 3.85
667 707 1.821241 CGCGTGTGTGTGAAGAGGTG 61.821 60.000 0.00 0.00 0.00 4.00
668 708 1.498865 GCGTGTGTGTGAAGAGGTGG 61.499 60.000 0.00 0.00 0.00 4.61
669 709 0.179084 CGTGTGTGTGAAGAGGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
670 710 1.583054 GTGTGTGTGAAGAGGTGGTC 58.417 55.000 0.00 0.00 0.00 4.02
671 711 1.134521 GTGTGTGTGAAGAGGTGGTCA 60.135 52.381 0.00 0.00 0.00 4.02
672 712 1.134521 TGTGTGTGAAGAGGTGGTCAC 60.135 52.381 0.00 0.00 43.66 3.67
673 713 1.139058 GTGTGTGAAGAGGTGGTCACT 59.861 52.381 5.49 0.00 43.73 3.41
674 714 1.412710 TGTGTGAAGAGGTGGTCACTC 59.587 52.381 5.49 2.77 43.73 3.51
675 715 1.689273 GTGTGAAGAGGTGGTCACTCT 59.311 52.381 5.49 0.00 46.77 3.24
676 716 2.891580 GTGTGAAGAGGTGGTCACTCTA 59.108 50.000 5.49 0.00 44.17 2.43
677 717 3.511934 GTGTGAAGAGGTGGTCACTCTAT 59.488 47.826 5.49 0.00 44.17 1.98
678 718 4.021016 GTGTGAAGAGGTGGTCACTCTATT 60.021 45.833 5.49 1.13 44.17 1.73
679 719 5.185249 GTGTGAAGAGGTGGTCACTCTATTA 59.815 44.000 5.49 0.00 44.17 0.98
680 720 5.778241 TGTGAAGAGGTGGTCACTCTATTAA 59.222 40.000 5.49 0.00 44.17 1.40
681 721 6.269077 TGTGAAGAGGTGGTCACTCTATTAAA 59.731 38.462 5.49 0.00 44.17 1.52
682 722 7.159372 GTGAAGAGGTGGTCACTCTATTAAAA 58.841 38.462 0.93 0.00 44.17 1.52
683 723 7.660208 GTGAAGAGGTGGTCACTCTATTAAAAA 59.340 37.037 0.93 0.00 44.17 1.94
710 750 9.833917 AATCATCTATCTATATGAATGTGCAGG 57.166 33.333 0.00 0.00 35.82 4.85
711 751 8.599624 TCATCTATCTATATGAATGTGCAGGA 57.400 34.615 0.00 0.00 0.00 3.86
712 752 8.693625 TCATCTATCTATATGAATGTGCAGGAG 58.306 37.037 0.00 0.00 0.00 3.69
713 753 6.871844 TCTATCTATATGAATGTGCAGGAGC 58.128 40.000 0.00 0.00 42.57 4.70
723 763 3.393360 GCAGGAGCACCCTACACT 58.607 61.111 0.00 0.00 45.60 3.55
724 764 2.591915 GCAGGAGCACCCTACACTA 58.408 57.895 0.00 0.00 45.60 2.74
725 765 0.461961 GCAGGAGCACCCTACACTAG 59.538 60.000 0.00 0.00 45.60 2.57
726 766 0.461961 CAGGAGCACCCTACACTAGC 59.538 60.000 0.00 0.00 45.60 3.42
727 767 1.038130 AGGAGCACCCTACACTAGCG 61.038 60.000 0.00 0.00 45.48 4.26
728 768 1.035932 GGAGCACCCTACACTAGCGA 61.036 60.000 0.00 0.00 0.00 4.93
729 769 0.382515 GAGCACCCTACACTAGCGAG 59.617 60.000 0.00 0.00 0.00 5.03
730 770 1.038130 AGCACCCTACACTAGCGAGG 61.038 60.000 0.00 0.00 0.00 4.63
731 771 1.437986 CACCCTACACTAGCGAGGC 59.562 63.158 0.00 0.00 0.00 4.70
732 772 1.038130 CACCCTACACTAGCGAGGCT 61.038 60.000 0.00 0.00 43.41 4.58
733 773 0.752376 ACCCTACACTAGCGAGGCTC 60.752 60.000 3.87 3.87 40.44 4.70
734 774 1.457009 CCCTACACTAGCGAGGCTCC 61.457 65.000 9.32 1.69 40.44 4.70
735 775 1.649815 CTACACTAGCGAGGCTCCG 59.350 63.158 9.32 5.46 40.44 4.63
736 776 1.077930 TACACTAGCGAGGCTCCGT 60.078 57.895 9.32 0.00 40.44 4.69
787 827 0.931005 GCCATCAGACCGAACGAATC 59.069 55.000 0.00 0.00 0.00 2.52
824 864 3.536570 GGCCTAGACTGACCTTTCATTC 58.463 50.000 0.00 0.00 32.73 2.67
837 877 7.717568 TGACCTTTCATTCCGAATAAAAACAA 58.282 30.769 0.00 0.00 32.32 2.83
838 878 7.865385 TGACCTTTCATTCCGAATAAAAACAAG 59.135 33.333 0.00 0.00 32.32 3.16
839 879 7.151976 ACCTTTCATTCCGAATAAAAACAAGG 58.848 34.615 0.00 0.00 32.32 3.61
840 880 6.589907 CCTTTCATTCCGAATAAAAACAAGGG 59.410 38.462 0.00 0.00 32.32 3.95
914 954 2.123683 TTGAGCACGGGGGCAAAA 60.124 55.556 0.00 0.00 35.83 2.44
948 990 1.290324 GAAGGCGAGACACAGAGCA 59.710 57.895 0.00 0.00 0.00 4.26
949 991 0.735632 GAAGGCGAGACACAGAGCAG 60.736 60.000 0.00 0.00 0.00 4.24
950 992 2.778309 AAGGCGAGACACAGAGCAGC 62.778 60.000 0.00 0.00 0.00 5.25
957 999 2.491693 GAGACACAGAGCAGCTAGAAGT 59.508 50.000 0.00 0.00 0.00 3.01
977 1019 0.601311 AGAACAGAAGAGGCACGCAC 60.601 55.000 0.00 0.00 0.00 5.34
1083 1125 4.099170 GCTGGCAGCAGCACGAAG 62.099 66.667 33.33 0.00 46.73 3.79
1119 1165 6.233905 TGTGTATGTATGTATGAACCTGCT 57.766 37.500 0.00 0.00 0.00 4.24
1135 1181 2.816672 CCTGCTGGTTTCTTTCTTCTCC 59.183 50.000 0.51 0.00 0.00 3.71
1291 1343 5.639757 TCATTCAGATTACACCATTTTGCG 58.360 37.500 0.00 0.00 0.00 4.85
1302 1354 1.530720 CCATTTTGCGGAAGTTTTGCC 59.469 47.619 0.00 0.00 0.00 4.52
1308 1360 1.205893 TGCGGAAGTTTTGCCAGTTTT 59.794 42.857 0.00 0.00 0.00 2.43
1326 1378 7.011202 GCCAGTTTTTACCCGATTTAACAAAAA 59.989 33.333 0.00 0.00 0.00 1.94
1355 1409 5.652452 ACCAGTTTTAATCCCATAGTGAAGC 59.348 40.000 0.00 0.00 0.00 3.86
1429 1483 4.564110 GCCCCCGGGATGTAGCAC 62.564 72.222 26.32 0.00 37.50 4.40
1439 1493 1.269309 GGATGTAGCACTGTAGCTCCG 60.269 57.143 7.78 0.00 45.26 4.63
1483 1537 3.559069 GGAATTGGATTCATGCCTCAGA 58.441 45.455 3.39 0.00 41.03 3.27
1552 1606 2.666022 GGCATGCCACGTTGTAATTTTC 59.334 45.455 32.08 0.00 35.81 2.29
1553 1607 2.341168 GCATGCCACGTTGTAATTTTCG 59.659 45.455 6.36 0.00 0.00 3.46
1562 1616 3.543670 GTTGTAATTTTCGTTTCGGCGA 58.456 40.909 4.99 4.99 39.28 5.54
1596 1650 1.218316 GAACCGGTCGAGAATGGCT 59.782 57.895 8.04 0.00 0.00 4.75
1597 1651 0.391263 GAACCGGTCGAGAATGGCTT 60.391 55.000 8.04 0.00 0.00 4.35
1598 1652 0.899720 AACCGGTCGAGAATGGCTTA 59.100 50.000 8.04 0.00 0.00 3.09
1599 1653 0.460311 ACCGGTCGAGAATGGCTTAG 59.540 55.000 0.00 0.00 0.00 2.18
1600 1654 0.876342 CCGGTCGAGAATGGCTTAGC 60.876 60.000 0.00 0.00 0.00 3.09
1643 1697 2.171567 CGGTTGTCAGATGTACGTACG 58.828 52.381 20.18 15.01 0.00 3.67
1652 1706 3.863424 CAGATGTACGTACGGAATGCTTT 59.137 43.478 21.06 0.00 0.00 3.51
1666 1720 0.662619 TGCTTTGCCTTGACGAGTTG 59.337 50.000 0.00 0.00 0.00 3.16
1677 1731 1.202371 TGACGAGTTGCTTCTTCACGT 60.202 47.619 0.00 0.00 35.31 4.49
1682 1736 1.532868 AGTTGCTTCTTCACGTCATGC 59.467 47.619 0.00 0.00 0.00 4.06
1809 1875 9.998381 GTTGTCCGCAATTTAAAATACTTTAAC 57.002 29.630 0.00 0.00 36.86 2.01
1834 1900 5.996644 TGTCTCTCTTGGTTTCCACTTTAA 58.003 37.500 0.00 0.00 30.78 1.52
5185 7696 2.542597 GTATTGCATGGTTGTGGCATG 58.457 47.619 0.00 0.00 37.39 4.06
5196 7707 2.043752 TGGCATGCATGTCCCCTG 60.044 61.111 27.59 2.53 0.00 4.45
5202 7713 2.042639 GCATGTCCCCTGGCCATT 60.043 61.111 5.51 0.00 0.00 3.16
5217 7728 4.424842 TGGCCATTTATCTTCCCAAAACT 58.575 39.130 0.00 0.00 0.00 2.66
5255 7766 2.496070 TCCTACAATGAACGTCCCTCTG 59.504 50.000 0.00 0.00 0.00 3.35
5700 8500 6.868339 CCAACAACTCAACTTTTTCTCAAAGT 59.132 34.615 0.00 0.00 41.82 2.66
5712 8512 9.007901 ACTTTTTCTCAAAGTGATCCTCAATAG 57.992 33.333 0.00 0.00 38.88 1.73
5965 8767 6.251255 TCCATGAAGATGATGGTGTTATCA 57.749 37.500 0.00 0.00 41.19 2.15
6236 9041 2.565841 GGAAGCCTTTCATGCGTCTAT 58.434 47.619 0.00 0.00 37.38 1.98
6311 9117 5.529060 ACTTTGAAGACAACTCCATCAAGTC 59.471 40.000 0.00 0.00 35.63 3.01
6362 9168 1.318576 CAAGACAACAACCCACTCCC 58.681 55.000 0.00 0.00 0.00 4.30
6370 9176 3.268103 AACCCACTCCCGGATGTGC 62.268 63.158 17.59 0.00 33.26 4.57
6663 9470 3.243839 TGCCAAGAAGCTTCCAAATGTTC 60.244 43.478 22.81 10.79 0.00 3.18
6665 9472 4.502087 GCCAAGAAGCTTCCAAATGTTCTT 60.502 41.667 22.81 4.24 37.84 2.52
6671 9478 5.459536 AGCTTCCAAATGTTCTTTTCCTC 57.540 39.130 0.00 0.00 0.00 3.71
6731 9538 6.801539 TTGGCACTGTTTACAGAAGAATAG 57.198 37.500 16.31 0.00 46.59 1.73
6732 9539 4.695455 TGGCACTGTTTACAGAAGAATAGC 59.305 41.667 16.31 7.90 46.59 2.97
6811 9620 0.033504 TTGCCGAGGAGTTCAGTGTC 59.966 55.000 0.00 0.00 0.00 3.67
6817 9626 1.079750 GGAGTTCAGTGTCGAGGCC 60.080 63.158 0.00 0.00 0.00 5.19
6835 9644 1.282570 CATGCCGACGTTTGTGCTT 59.717 52.632 0.00 0.00 0.00 3.91
6853 9662 4.396478 GTGCTTATGAAGGAAGGAAAGGTC 59.604 45.833 0.00 0.00 0.00 3.85
6891 9700 1.913722 CTGCCAAGGAGGAGCTGAT 59.086 57.895 0.00 0.00 41.22 2.90
6892 9701 0.255318 CTGCCAAGGAGGAGCTGATT 59.745 55.000 0.00 0.00 41.22 2.57
6904 9713 1.332997 GAGCTGATTGGGAAGATTGCG 59.667 52.381 0.00 0.00 0.00 4.85
6932 9741 3.635433 GCAACTGCATGCATAGTGG 57.365 52.632 22.97 15.26 45.70 4.00
6933 9742 1.097232 GCAACTGCATGCATAGTGGA 58.903 50.000 22.97 0.00 45.70 4.02
6934 9743 1.065102 GCAACTGCATGCATAGTGGAG 59.935 52.381 22.97 10.18 45.70 3.86
6936 9745 3.534554 CAACTGCATGCATAGTGGAGTA 58.465 45.455 22.97 0.00 45.74 2.59
6937 9746 3.465742 ACTGCATGCATAGTGGAGTAG 57.534 47.619 22.97 7.80 44.84 2.57
6938 9747 2.103771 ACTGCATGCATAGTGGAGTAGG 59.896 50.000 22.97 7.24 44.84 3.18
6939 9748 1.417517 TGCATGCATAGTGGAGTAGGG 59.582 52.381 18.46 0.00 0.00 3.53
6940 9749 1.271054 GCATGCATAGTGGAGTAGGGG 60.271 57.143 14.21 0.00 0.00 4.79
6941 9750 2.050144 CATGCATAGTGGAGTAGGGGT 58.950 52.381 0.00 0.00 0.00 4.95
6942 9751 3.239449 CATGCATAGTGGAGTAGGGGTA 58.761 50.000 0.00 0.00 0.00 3.69
6943 9752 2.958818 TGCATAGTGGAGTAGGGGTAG 58.041 52.381 0.00 0.00 0.00 3.18
6944 9753 2.246588 TGCATAGTGGAGTAGGGGTAGT 59.753 50.000 0.00 0.00 0.00 2.73
6945 9754 3.464456 TGCATAGTGGAGTAGGGGTAGTA 59.536 47.826 0.00 0.00 0.00 1.82
6946 9755 4.107473 TGCATAGTGGAGTAGGGGTAGTAT 59.893 45.833 0.00 0.00 0.00 2.12
6947 9756 5.085219 GCATAGTGGAGTAGGGGTAGTATT 58.915 45.833 0.00 0.00 0.00 1.89
6948 9757 5.185442 GCATAGTGGAGTAGGGGTAGTATTC 59.815 48.000 0.00 0.00 0.00 1.75
6949 9758 3.830121 AGTGGAGTAGGGGTAGTATTCG 58.170 50.000 0.00 0.00 0.00 3.34
6950 9759 2.295629 GTGGAGTAGGGGTAGTATTCGC 59.704 54.545 0.00 0.00 0.00 4.70
6976 9785 8.462016 CCTAAATAAAATGGTCCTTCAACTCTG 58.538 37.037 0.00 0.00 0.00 3.35
6978 9787 7.693969 AATAAAATGGTCCTTCAACTCTGAG 57.306 36.000 2.45 2.45 31.69 3.35
7001 9810 6.455647 AGTTCGAGAATAAGATGTGTGTCAA 58.544 36.000 0.00 0.00 0.00 3.18
7042 9854 1.842562 ACTCATGGATAAGCTGGCACT 59.157 47.619 0.00 0.00 0.00 4.40
7069 9881 5.230942 GCTGGAGCAGATACGTAATGTAAT 58.769 41.667 0.00 0.00 41.59 1.89
7070 9882 5.119279 GCTGGAGCAGATACGTAATGTAATG 59.881 44.000 0.00 0.00 41.59 1.90
7071 9883 6.156748 TGGAGCAGATACGTAATGTAATGT 57.843 37.500 0.00 0.00 36.44 2.71
7094 9906 2.096220 TAAACCCTGTTAATCGCGCA 57.904 45.000 8.75 0.00 0.00 6.09
7095 9907 0.519961 AAACCCTGTTAATCGCGCAC 59.480 50.000 8.75 0.00 0.00 5.34
7173 9994 1.098712 TGTGTCCAAGGTTCAACCGC 61.099 55.000 0.00 0.00 44.90 5.68
7284 10125 1.081242 GTGTGCAATGGTTGGCTCG 60.081 57.895 0.00 0.00 0.00 5.03
7300 10141 1.591248 CTCGATCGCAAACGGTTTTG 58.409 50.000 11.09 0.00 44.42 2.44
7321 10162 0.847670 TTAACGAGTTGTGTGCGACG 59.152 50.000 0.00 0.00 34.22 5.12
7367 10212 6.127054 TGACGAATCCTTGTTCCATTAGATCT 60.127 38.462 0.00 0.00 0.00 2.75
7512 10357 5.887035 CCTAAACCATATTTTGACCCCGTTA 59.113 40.000 0.00 0.00 0.00 3.18
7540 10385 4.887190 ACCGCCACAAAACCGCCT 62.887 61.111 0.00 0.00 0.00 5.52
7616 10462 2.878406 GGTCCAATATGCTTACATGCGT 59.122 45.455 0.00 0.00 37.04 5.24
7852 10701 4.165372 AGGGACCAAGTCTGTACTTTTTGA 59.835 41.667 0.00 0.00 43.60 2.69
7937 10786 0.745845 CGGACCAGCTCCATTTCCTG 60.746 60.000 0.00 0.00 39.39 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.596727 CGAGCTTAGAGCATTTCCAGC 59.403 52.381 2.47 0.00 45.56 4.85
9 10 3.170791 TCGAGCTTAGAGCATTTCCAG 57.829 47.619 2.47 0.00 45.56 3.86
11 12 3.262420 TGTTCGAGCTTAGAGCATTTCC 58.738 45.455 0.00 0.00 45.56 3.13
12 13 4.390297 ACTTGTTCGAGCTTAGAGCATTTC 59.610 41.667 9.68 0.00 45.56 2.17
13 14 4.319177 ACTTGTTCGAGCTTAGAGCATTT 58.681 39.130 9.68 0.00 45.56 2.32
14 15 3.931578 ACTTGTTCGAGCTTAGAGCATT 58.068 40.909 9.68 0.26 45.56 3.56
16 17 3.119459 CCTACTTGTTCGAGCTTAGAGCA 60.119 47.826 0.00 5.77 45.56 4.26
17 18 3.440228 CCTACTTGTTCGAGCTTAGAGC 58.560 50.000 0.00 0.00 42.84 4.09
18 19 3.695060 TCCCTACTTGTTCGAGCTTAGAG 59.305 47.826 0.00 0.00 0.00 2.43
19 20 3.693807 TCCCTACTTGTTCGAGCTTAGA 58.306 45.455 0.00 0.00 0.00 2.10
32 33 1.394532 TCACTCCCTCCTCCCTACTT 58.605 55.000 0.00 0.00 0.00 2.24
69 70 2.677228 CCTCCACCCGGCTTCATT 59.323 61.111 0.00 0.00 0.00 2.57
89 90 2.978978 TCCTCTTCTCCAACATGTTCCA 59.021 45.455 8.48 0.00 0.00 3.53
91 92 3.261897 TCCTCCTCTTCTCCAACATGTTC 59.738 47.826 8.48 0.00 0.00 3.18
96 97 4.788925 TTTTTCCTCCTCTTCTCCAACA 57.211 40.909 0.00 0.00 0.00 3.33
150 190 0.179062 CCTTCAAGCTCTCCATCCCG 60.179 60.000 0.00 0.00 0.00 5.14
188 228 3.047877 CTTTGGGTCACCGCCGAC 61.048 66.667 0.00 0.00 40.75 4.79
206 246 1.072678 GGTCGCCCTATTTAGCCCC 59.927 63.158 0.00 0.00 0.00 5.80
208 248 0.400594 ATGGGTCGCCCTATTTAGCC 59.599 55.000 14.76 0.00 45.70 3.93
209 249 2.152016 GAATGGGTCGCCCTATTTAGC 58.848 52.381 14.76 0.00 45.70 3.09
225 265 2.511600 GTCACCTCCCGCCGAATG 60.512 66.667 0.00 0.00 0.00 2.67
242 282 2.830370 GCAGCGGGAGGAATTGGG 60.830 66.667 0.00 0.00 0.00 4.12
316 356 4.489771 GCATGGGAGGGGGACGTG 62.490 72.222 0.00 0.00 0.00 4.49
321 361 3.492353 ATCGTGCATGGGAGGGGG 61.492 66.667 5.98 0.00 0.00 5.40
335 375 2.355599 CCAGCTAGGCTCGCATCG 60.356 66.667 13.89 1.26 36.40 3.84
352 392 4.199310 TGACCGAATCAATCATTTCCTCC 58.801 43.478 0.00 0.00 33.02 4.30
386 426 4.689612 AACCTTAAAGCACTCAGTCAGA 57.310 40.909 0.00 0.00 0.00 3.27
412 452 9.674068 TCTATGTTTACTGTTTGGTATGCATAA 57.326 29.630 8.28 0.00 0.00 1.90
454 494 5.183904 GGCCTGTCTGAATGTCTATGTTTTT 59.816 40.000 0.00 0.00 0.00 1.94
455 495 4.702131 GGCCTGTCTGAATGTCTATGTTTT 59.298 41.667 0.00 0.00 0.00 2.43
456 496 4.263462 TGGCCTGTCTGAATGTCTATGTTT 60.263 41.667 3.32 0.00 0.00 2.83
457 497 3.264193 TGGCCTGTCTGAATGTCTATGTT 59.736 43.478 3.32 0.00 0.00 2.71
458 498 2.840038 TGGCCTGTCTGAATGTCTATGT 59.160 45.455 3.32 0.00 0.00 2.29
459 499 3.548745 TGGCCTGTCTGAATGTCTATG 57.451 47.619 3.32 0.00 0.00 2.23
460 500 4.574674 TTTGGCCTGTCTGAATGTCTAT 57.425 40.909 3.32 0.00 0.00 1.98
461 501 4.574674 ATTTGGCCTGTCTGAATGTCTA 57.425 40.909 3.32 0.00 0.00 2.59
462 502 2.957402 TTTGGCCTGTCTGAATGTCT 57.043 45.000 3.32 0.00 0.00 3.41
471 511 2.613691 CAGATGCAAATTTGGCCTGTC 58.386 47.619 19.47 9.75 0.00 3.51
528 568 1.580059 TGTTAGAGTAGCCAAGGGGG 58.420 55.000 0.00 0.00 40.85 5.40
551 591 8.492782 CCTCAGCCCATAAATATAGATCTTGAT 58.507 37.037 0.00 0.00 0.00 2.57
553 593 7.052873 CCCTCAGCCCATAAATATAGATCTTG 58.947 42.308 0.00 0.00 0.00 3.02
554 594 6.159398 CCCCTCAGCCCATAAATATAGATCTT 59.841 42.308 0.00 0.00 0.00 2.40
555 595 5.669447 CCCCTCAGCCCATAAATATAGATCT 59.331 44.000 0.00 0.00 0.00 2.75
556 596 5.667626 TCCCCTCAGCCCATAAATATAGATC 59.332 44.000 0.00 0.00 0.00 2.75
557 597 5.613826 TCCCCTCAGCCCATAAATATAGAT 58.386 41.667 0.00 0.00 0.00 1.98
558 598 5.036470 TCCCCTCAGCCCATAAATATAGA 57.964 43.478 0.00 0.00 0.00 1.98
559 599 5.688807 CATCCCCTCAGCCCATAAATATAG 58.311 45.833 0.00 0.00 0.00 1.31
560 600 4.079787 GCATCCCCTCAGCCCATAAATATA 60.080 45.833 0.00 0.00 0.00 0.86
561 601 3.309410 GCATCCCCTCAGCCCATAAATAT 60.309 47.826 0.00 0.00 0.00 1.28
562 602 2.041620 GCATCCCCTCAGCCCATAAATA 59.958 50.000 0.00 0.00 0.00 1.40
563 603 1.203100 GCATCCCCTCAGCCCATAAAT 60.203 52.381 0.00 0.00 0.00 1.40
564 604 0.185901 GCATCCCCTCAGCCCATAAA 59.814 55.000 0.00 0.00 0.00 1.40
565 605 1.719063 GGCATCCCCTCAGCCCATAA 61.719 60.000 0.00 0.00 42.58 1.90
567 607 3.505773 GGCATCCCCTCAGCCCAT 61.506 66.667 0.00 0.00 42.58 4.00
574 614 4.971125 GCGCGTAGGCATCCCCTC 62.971 72.222 8.43 0.00 44.96 4.30
577 617 3.850095 GAGAGCGCGTAGGCATCCC 62.850 68.421 8.43 0.00 39.92 3.85
578 618 2.355244 GAGAGCGCGTAGGCATCC 60.355 66.667 8.43 0.00 39.92 3.51
579 619 2.355244 GGAGAGCGCGTAGGCATC 60.355 66.667 8.43 4.96 39.92 3.91
580 620 4.271816 CGGAGAGCGCGTAGGCAT 62.272 66.667 8.43 0.00 39.92 4.40
582 622 3.984200 AAACGGAGAGCGCGTAGGC 62.984 63.158 8.43 0.00 0.00 3.93
583 623 2.158959 CAAACGGAGAGCGCGTAGG 61.159 63.158 8.43 0.00 0.00 3.18
584 624 1.007336 AACAAACGGAGAGCGCGTAG 61.007 55.000 8.43 0.00 0.00 3.51
585 625 1.007038 AACAAACGGAGAGCGCGTA 60.007 52.632 8.43 0.00 0.00 4.42
586 626 2.279918 AACAAACGGAGAGCGCGT 60.280 55.556 8.43 0.00 0.00 6.01
587 627 1.279527 TACAACAAACGGAGAGCGCG 61.280 55.000 0.00 0.00 0.00 6.86
588 628 0.163146 GTACAACAAACGGAGAGCGC 59.837 55.000 0.00 0.00 0.00 5.92
589 629 1.493772 TGTACAACAAACGGAGAGCG 58.506 50.000 0.00 0.00 0.00 5.03
590 630 3.991773 TGTATGTACAACAAACGGAGAGC 59.008 43.478 0.00 0.00 32.40 4.09
591 631 7.201496 GGTTATGTATGTACAACAAACGGAGAG 60.201 40.741 0.00 0.00 39.99 3.20
592 632 6.591062 GGTTATGTATGTACAACAAACGGAGA 59.409 38.462 0.00 0.00 39.99 3.71
593 633 6.592607 AGGTTATGTATGTACAACAAACGGAG 59.407 38.462 0.00 0.00 39.99 4.63
594 634 6.465948 AGGTTATGTATGTACAACAAACGGA 58.534 36.000 0.00 0.00 39.99 4.69
595 635 6.730960 AGGTTATGTATGTACAACAAACGG 57.269 37.500 0.00 0.00 39.99 4.44
596 636 9.453325 AAAAAGGTTATGTATGTACAACAAACG 57.547 29.630 0.00 0.00 39.99 3.60
598 638 9.751542 CCAAAAAGGTTATGTATGTACAACAAA 57.248 29.630 0.00 1.82 39.99 2.83
599 639 7.868415 GCCAAAAAGGTTATGTATGTACAACAA 59.132 33.333 0.00 0.00 38.68 2.83
600 640 7.014326 TGCCAAAAAGGTTATGTATGTACAACA 59.986 33.333 0.00 6.50 38.68 3.33
601 641 7.371936 TGCCAAAAAGGTTATGTATGTACAAC 58.628 34.615 0.00 0.31 38.68 3.32
602 642 7.526142 TGCCAAAAAGGTTATGTATGTACAA 57.474 32.000 0.00 0.00 38.68 2.41
603 643 7.526142 TTGCCAAAAAGGTTATGTATGTACA 57.474 32.000 0.00 0.00 40.61 2.90
604 644 8.819643 TTTTGCCAAAAAGGTTATGTATGTAC 57.180 30.769 0.00 0.00 40.61 2.90
645 685 0.776451 CTCTTCACACACACGCGTAC 59.224 55.000 13.44 0.00 0.00 3.67
646 686 0.318360 CCTCTTCACACACACGCGTA 60.318 55.000 13.44 0.00 0.00 4.42
647 687 1.591594 CCTCTTCACACACACGCGT 60.592 57.895 5.58 5.58 0.00 6.01
648 688 1.591594 ACCTCTTCACACACACGCG 60.592 57.895 3.53 3.53 0.00 6.01
649 689 1.498865 CCACCTCTTCACACACACGC 61.499 60.000 0.00 0.00 0.00 5.34
650 690 0.179084 ACCACCTCTTCACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
651 691 1.134521 TGACCACCTCTTCACACACAC 60.135 52.381 0.00 0.00 0.00 3.82
652 692 1.134521 GTGACCACCTCTTCACACACA 60.135 52.381 0.00 0.00 41.58 3.72
653 693 1.139058 AGTGACCACCTCTTCACACAC 59.861 52.381 4.66 0.00 43.94 3.82
654 694 1.412710 GAGTGACCACCTCTTCACACA 59.587 52.381 4.66 0.00 43.94 3.72
655 695 1.689273 AGAGTGACCACCTCTTCACAC 59.311 52.381 4.66 0.00 43.94 3.82
656 696 2.088104 AGAGTGACCACCTCTTCACA 57.912 50.000 4.66 0.00 43.94 3.58
657 697 4.810191 AATAGAGTGACCACCTCTTCAC 57.190 45.455 0.00 0.00 42.17 3.18
658 698 6.928348 TTTAATAGAGTGACCACCTCTTCA 57.072 37.500 0.00 0.00 0.00 3.02
684 724 9.833917 CCTGCACATTCATATAGATAGATGATT 57.166 33.333 0.00 0.00 34.32 2.57
685 725 9.210228 TCCTGCACATTCATATAGATAGATGAT 57.790 33.333 0.00 0.00 34.32 2.45
686 726 8.599624 TCCTGCACATTCATATAGATAGATGA 57.400 34.615 0.00 0.00 32.61 2.92
687 727 7.438757 GCTCCTGCACATTCATATAGATAGATG 59.561 40.741 0.00 0.00 39.41 2.90
688 728 7.125356 TGCTCCTGCACATTCATATAGATAGAT 59.875 37.037 0.00 0.00 45.31 1.98
689 729 6.438425 TGCTCCTGCACATTCATATAGATAGA 59.562 38.462 0.00 0.00 45.31 1.98
690 730 6.637657 TGCTCCTGCACATTCATATAGATAG 58.362 40.000 0.00 0.00 45.31 2.08
691 731 6.610075 TGCTCCTGCACATTCATATAGATA 57.390 37.500 0.00 0.00 45.31 1.98
692 732 5.494390 TGCTCCTGCACATTCATATAGAT 57.506 39.130 0.00 0.00 45.31 1.98
693 733 4.961438 TGCTCCTGCACATTCATATAGA 57.039 40.909 0.00 0.00 45.31 1.98
709 749 1.035932 TCGCTAGTGTAGGGTGCTCC 61.036 60.000 2.66 0.00 39.50 4.70
710 750 0.382515 CTCGCTAGTGTAGGGTGCTC 59.617 60.000 2.66 0.00 39.50 4.26
711 751 1.038130 CCTCGCTAGTGTAGGGTGCT 61.038 60.000 2.66 0.00 39.50 4.40
712 752 1.437986 CCTCGCTAGTGTAGGGTGC 59.562 63.158 2.66 0.00 39.50 5.01
713 753 1.038130 AGCCTCGCTAGTGTAGGGTG 61.038 60.000 19.20 0.00 39.58 4.61
714 754 0.752376 GAGCCTCGCTAGTGTAGGGT 60.752 60.000 19.67 19.67 43.60 4.34
715 755 1.457009 GGAGCCTCGCTAGTGTAGGG 61.457 65.000 17.87 13.06 39.88 3.53
716 756 1.787057 CGGAGCCTCGCTAGTGTAGG 61.787 65.000 14.10 14.10 39.88 3.18
717 757 1.096386 ACGGAGCCTCGCTAGTGTAG 61.096 60.000 2.66 0.00 39.88 2.74
718 758 0.178767 TACGGAGCCTCGCTAGTGTA 59.821 55.000 2.66 0.00 39.88 2.90
719 759 0.679002 TTACGGAGCCTCGCTAGTGT 60.679 55.000 2.66 0.00 39.88 3.55
720 760 0.454600 TTTACGGAGCCTCGCTAGTG 59.545 55.000 0.00 0.00 39.88 2.74
721 761 1.134560 CTTTTACGGAGCCTCGCTAGT 59.865 52.381 0.00 0.00 39.88 2.57
722 762 1.536284 CCTTTTACGGAGCCTCGCTAG 60.536 57.143 0.00 0.00 39.88 3.42
723 763 0.458669 CCTTTTACGGAGCCTCGCTA 59.541 55.000 0.00 0.00 39.88 4.26
724 764 1.218316 CCTTTTACGGAGCCTCGCT 59.782 57.895 0.00 0.00 43.88 4.93
725 765 0.390735 TTCCTTTTACGGAGCCTCGC 60.391 55.000 0.00 0.00 33.89 5.03
726 766 1.203994 TCTTCCTTTTACGGAGCCTCG 59.796 52.381 0.00 0.00 33.89 4.63
727 767 3.329929 TTCTTCCTTTTACGGAGCCTC 57.670 47.619 0.00 0.00 33.89 4.70
728 768 3.326880 TCTTTCTTCCTTTTACGGAGCCT 59.673 43.478 0.00 0.00 33.89 4.58
729 769 3.671716 TCTTTCTTCCTTTTACGGAGCC 58.328 45.455 0.00 0.00 33.89 4.70
730 770 5.334957 CCTTTCTTTCTTCCTTTTACGGAGC 60.335 44.000 0.00 0.00 33.89 4.70
731 771 5.995897 TCCTTTCTTTCTTCCTTTTACGGAG 59.004 40.000 0.00 0.00 33.89 4.63
732 772 5.932455 TCCTTTCTTTCTTCCTTTTACGGA 58.068 37.500 0.00 0.00 0.00 4.69
733 773 6.628919 TTCCTTTCTTTCTTCCTTTTACGG 57.371 37.500 0.00 0.00 0.00 4.02
734 774 7.306213 GGATTCCTTTCTTTCTTCCTTTTACG 58.694 38.462 0.00 0.00 0.00 3.18
735 775 7.232737 TGGGATTCCTTTCTTTCTTCCTTTTAC 59.767 37.037 2.01 0.00 0.00 2.01
736 776 7.302184 TGGGATTCCTTTCTTTCTTCCTTTTA 58.698 34.615 2.01 0.00 0.00 1.52
806 846 4.720649 TCGGAATGAAAGGTCAGTCTAG 57.279 45.455 4.42 0.00 45.95 2.43
807 847 5.677319 ATTCGGAATGAAAGGTCAGTCTA 57.323 39.130 1.68 0.00 45.95 2.59
808 848 4.559862 ATTCGGAATGAAAGGTCAGTCT 57.440 40.909 1.68 0.00 45.95 3.24
824 864 4.082408 GGACCTTCCCTTGTTTTTATTCGG 60.082 45.833 0.00 0.00 0.00 4.30
839 879 0.039618 TTCTTGGCATGGGACCTTCC 59.960 55.000 0.00 0.00 35.23 3.46
840 880 2.027385 GATTCTTGGCATGGGACCTTC 58.973 52.381 0.00 0.00 0.00 3.46
878 918 3.741476 CAGCCACGCCTTCCTTGC 61.741 66.667 0.00 0.00 0.00 4.01
926 966 1.118965 TCTGTGTCTCGCCTTCCCAA 61.119 55.000 0.00 0.00 0.00 4.12
927 967 1.533033 TCTGTGTCTCGCCTTCCCA 60.533 57.895 0.00 0.00 0.00 4.37
948 990 4.401202 GCCTCTTCTGTTCTACTTCTAGCT 59.599 45.833 0.00 0.00 0.00 3.32
949 991 4.158764 TGCCTCTTCTGTTCTACTTCTAGC 59.841 45.833 0.00 0.00 0.00 3.42
950 992 5.646606 GTGCCTCTTCTGTTCTACTTCTAG 58.353 45.833 0.00 0.00 0.00 2.43
957 999 0.966179 TGCGTGCCTCTTCTGTTCTA 59.034 50.000 0.00 0.00 0.00 2.10
977 1019 0.729478 TCTCGCTTCTTTCTCACGCG 60.729 55.000 3.53 3.53 44.63 6.01
1048 1090 2.279784 CTCCTCGATCTTGGCGGC 60.280 66.667 0.00 0.00 0.00 6.53
1049 1091 2.419198 CCTCCTCGATCTTGGCGG 59.581 66.667 0.00 0.00 0.00 6.13
1051 1093 1.227497 CAGCCTCCTCGATCTTGGC 60.227 63.158 9.81 9.81 43.52 4.52
1094 1136 6.707608 AGCAGGTTCATACATACATACACATG 59.292 38.462 0.00 0.00 38.21 3.21
1119 1165 6.127451 GGAACAAAAGGAGAAGAAAGAAACCA 60.127 38.462 0.00 0.00 0.00 3.67
1250 1297 7.122055 TCTGAATGAAAAATGTTAACGGGCTAT 59.878 33.333 0.26 0.00 0.00 2.97
1291 1343 4.124238 GGGTAAAAACTGGCAAAACTTCC 58.876 43.478 0.00 0.00 0.00 3.46
1326 1378 9.762381 TCACTATGGGATTAAAACTGGTTAAAT 57.238 29.630 0.00 0.00 0.00 1.40
1370 1424 1.063027 CACTGCACATACTTGATGGCG 59.937 52.381 0.00 0.00 40.18 5.69
1428 1482 2.701780 CGAGCACCGGAGCTACAGT 61.702 63.158 26.96 4.03 46.75 3.55
1429 1483 2.103143 CGAGCACCGGAGCTACAG 59.897 66.667 26.96 16.48 46.75 2.74
1439 1493 2.579207 TGTTCACTATAGCGAGCACC 57.421 50.000 3.45 0.00 0.00 5.01
1552 1606 1.340465 CGAAGTGATCGCCGAAACG 59.660 57.895 1.76 0.00 45.89 3.60
1596 1650 6.854778 AGAAAACAAAACTACGTTTGGCTAA 58.145 32.000 0.00 0.00 41.82 3.09
1597 1651 6.093771 TGAGAAAACAAAACTACGTTTGGCTA 59.906 34.615 0.00 0.00 41.82 3.93
1598 1652 5.106078 TGAGAAAACAAAACTACGTTTGGCT 60.106 36.000 0.00 0.00 41.82 4.75
1599 1653 5.004061 GTGAGAAAACAAAACTACGTTTGGC 59.996 40.000 0.00 0.00 41.82 4.52
1600 1654 5.226360 CGTGAGAAAACAAAACTACGTTTGG 59.774 40.000 0.00 0.00 41.82 3.28
1601 1655 5.226360 CCGTGAGAAAACAAAACTACGTTTG 59.774 40.000 0.00 0.00 42.93 2.93
1602 1656 5.106594 ACCGTGAGAAAACAAAACTACGTTT 60.107 36.000 0.00 0.00 37.34 3.60
1603 1657 4.392754 ACCGTGAGAAAACAAAACTACGTT 59.607 37.500 0.00 0.00 0.00 3.99
1606 1660 5.633927 ACAACCGTGAGAAAACAAAACTAC 58.366 37.500 0.00 0.00 0.00 2.73
1623 1677 2.171567 CGTACGTACATCTGACAACCG 58.828 52.381 24.50 3.14 0.00 4.44
1643 1697 0.881118 TCGTCAAGGCAAAGCATTCC 59.119 50.000 0.00 0.00 27.16 3.01
1652 1706 0.106708 AGAAGCAACTCGTCAAGGCA 59.893 50.000 0.00 0.00 0.00 4.75
1666 1720 1.291877 ACCGCATGACGTGAAGAAGC 61.292 55.000 0.00 0.00 41.42 3.86
1677 1731 2.198827 ATGAACAAGGAACCGCATGA 57.801 45.000 0.00 0.00 0.00 3.07
1682 1736 2.351738 GGAAGCAATGAACAAGGAACCG 60.352 50.000 0.00 0.00 0.00 4.44
1809 1875 4.078639 AGTGGAAACCAAGAGAGACAAG 57.921 45.455 0.00 0.00 34.18 3.16
1834 1900 4.537015 GCACACAACTCGCTAAGAAAAAT 58.463 39.130 0.00 0.00 0.00 1.82
5196 7707 5.420725 AAGTTTTGGGAAGATAAATGGCC 57.579 39.130 0.00 0.00 0.00 5.36
5601 8401 5.779922 TCTCACACACTTACCTATGTTCAC 58.220 41.667 0.00 0.00 0.00 3.18
5795 8595 6.402222 AGAGGATCAGTACAAACATCTGTTC 58.598 40.000 0.00 0.00 35.45 3.18
5965 8767 3.573110 GGGTATCGGTACTTCAGTATGCT 59.427 47.826 5.69 0.00 34.76 3.79
6236 9041 4.822685 AATGGCCATTCTTGCAACAATA 57.177 36.364 25.73 0.00 0.00 1.90
6311 9117 3.560902 TCACGAGCTACACTCAAAGAG 57.439 47.619 0.00 0.00 46.63 2.85
6370 9176 1.603455 AACGTTCATGCCAGGGTGG 60.603 57.895 0.00 0.00 41.55 4.61
6663 9470 4.144297 TCAACATCCACCTTGAGGAAAAG 58.856 43.478 3.59 0.00 38.93 2.27
6665 9472 3.874383 TCAACATCCACCTTGAGGAAA 57.126 42.857 3.59 0.00 38.93 3.13
6671 9478 5.648178 TCATTTCATCAACATCCACCTTG 57.352 39.130 0.00 0.00 0.00 3.61
6731 9538 3.813529 AGTAACTCAGAATTTGCACGC 57.186 42.857 0.00 0.00 0.00 5.34
6732 9539 6.831769 ACAATAGTAACTCAGAATTTGCACG 58.168 36.000 0.00 0.00 0.00 5.34
6817 9626 0.515127 TAAGCACAAACGTCGGCATG 59.485 50.000 0.00 0.00 0.00 4.06
6835 9644 3.055385 CCACGACCTTTCCTTCCTTCATA 60.055 47.826 0.00 0.00 0.00 2.15
6853 9662 0.884704 CTCCCACAACCTTGTCCACG 60.885 60.000 0.00 0.00 39.91 4.94
6891 9700 0.881118 GTGCTTCGCAATCTTCCCAA 59.119 50.000 0.00 0.00 41.47 4.12
6892 9701 0.250684 TGTGCTTCGCAATCTTCCCA 60.251 50.000 0.00 0.00 41.47 4.37
6926 9735 5.568392 CGAATACTACCCCTACTCCACTAT 58.432 45.833 0.00 0.00 0.00 2.12
6927 9736 4.747931 GCGAATACTACCCCTACTCCACTA 60.748 50.000 0.00 0.00 0.00 2.74
6928 9737 3.830121 CGAATACTACCCCTACTCCACT 58.170 50.000 0.00 0.00 0.00 4.00
6929 9738 2.295629 GCGAATACTACCCCTACTCCAC 59.704 54.545 0.00 0.00 0.00 4.02
6930 9739 2.590821 GCGAATACTACCCCTACTCCA 58.409 52.381 0.00 0.00 0.00 3.86
6931 9740 1.891811 GGCGAATACTACCCCTACTCC 59.108 57.143 0.00 0.00 0.00 3.85
6932 9741 2.874014 AGGCGAATACTACCCCTACTC 58.126 52.381 0.00 0.00 0.00 2.59
6933 9742 4.459852 TTAGGCGAATACTACCCCTACT 57.540 45.455 0.00 0.00 0.00 2.57
6934 9743 5.735285 ATTTAGGCGAATACTACCCCTAC 57.265 43.478 0.00 0.00 0.00 3.18
6935 9744 7.854166 TTTATTTAGGCGAATACTACCCCTA 57.146 36.000 0.00 0.00 0.00 3.53
6936 9745 6.752285 TTTATTTAGGCGAATACTACCCCT 57.248 37.500 0.00 0.00 0.00 4.79
6937 9746 7.094506 CCATTTTATTTAGGCGAATACTACCCC 60.095 40.741 0.00 0.00 0.00 4.95
6938 9747 7.446319 ACCATTTTATTTAGGCGAATACTACCC 59.554 37.037 0.00 0.00 0.00 3.69
6939 9748 8.387190 ACCATTTTATTTAGGCGAATACTACC 57.613 34.615 0.00 0.00 0.00 3.18
6940 9749 8.501580 GGACCATTTTATTTAGGCGAATACTAC 58.498 37.037 0.00 0.00 0.00 2.73
6941 9750 8.434392 AGGACCATTTTATTTAGGCGAATACTA 58.566 33.333 0.00 0.00 0.00 1.82
6942 9751 7.287810 AGGACCATTTTATTTAGGCGAATACT 58.712 34.615 0.00 0.00 0.00 2.12
6943 9752 7.506328 AGGACCATTTTATTTAGGCGAATAC 57.494 36.000 0.00 0.00 0.00 1.89
6944 9753 7.776030 TGAAGGACCATTTTATTTAGGCGAATA 59.224 33.333 0.00 0.00 0.00 1.75
6945 9754 6.605594 TGAAGGACCATTTTATTTAGGCGAAT 59.394 34.615 0.00 0.00 0.00 3.34
6946 9755 5.946972 TGAAGGACCATTTTATTTAGGCGAA 59.053 36.000 0.00 0.00 0.00 4.70
6947 9756 5.502079 TGAAGGACCATTTTATTTAGGCGA 58.498 37.500 0.00 0.00 0.00 5.54
6948 9757 5.828299 TGAAGGACCATTTTATTTAGGCG 57.172 39.130 0.00 0.00 0.00 5.52
6949 9758 7.122799 AGAGTTGAAGGACCATTTTATTTAGGC 59.877 37.037 0.00 0.00 0.00 3.93
6950 9759 8.462016 CAGAGTTGAAGGACCATTTTATTTAGG 58.538 37.037 0.00 0.00 0.00 2.69
6976 9785 6.093404 TGACACACATCTTATTCTCGAACTC 58.907 40.000 0.00 0.00 0.00 3.01
6978 9787 6.401153 GGTTGACACACATCTTATTCTCGAAC 60.401 42.308 0.00 0.00 0.00 3.95
7048 9860 6.156748 ACATTACATTACGTATCTGCTCCA 57.843 37.500 0.00 0.00 0.00 3.86
7050 9862 7.464830 ACAACATTACATTACGTATCTGCTC 57.535 36.000 0.00 0.00 0.00 4.26
7051 9863 7.843490 AACAACATTACATTACGTATCTGCT 57.157 32.000 0.00 0.00 0.00 4.24
7052 9864 9.976255 TTTAACAACATTACATTACGTATCTGC 57.024 29.630 0.00 0.00 0.00 4.26
7056 9868 9.452287 AGGGTTTAACAACATTACATTACGTAT 57.548 29.630 0.00 0.00 34.15 3.06
7069 9881 4.319622 CGCGATTAACAGGGTTTAACAACA 60.320 41.667 0.00 0.00 34.15 3.33
7070 9882 4.153256 CGCGATTAACAGGGTTTAACAAC 58.847 43.478 0.00 0.00 0.00 3.32
7071 9883 3.365164 GCGCGATTAACAGGGTTTAACAA 60.365 43.478 12.10 0.00 0.00 2.83
7094 9906 2.143122 CATACAGTTTGTCGCCAGTGT 58.857 47.619 0.00 0.00 0.00 3.55
7095 9907 2.096268 CACATACAGTTTGTCGCCAGTG 60.096 50.000 0.00 0.00 0.00 3.66
7158 9979 1.890041 CACGCGGTTGAACCTTGGA 60.890 57.895 12.47 0.00 35.66 3.53
7300 10141 0.856641 TCGCACACAACTCGTTAAGC 59.143 50.000 0.00 0.00 0.00 3.09
7306 10147 1.084290 CAACGTCGCACACAACTCG 60.084 57.895 0.00 0.00 0.00 4.18
7321 10162 5.623673 GTCAATTGGTAATCGTGTGAACAAC 59.376 40.000 5.42 0.00 0.00 3.32
7372 10217 9.573133 GGACCAAAAACATACTTCTTTCATATG 57.427 33.333 0.00 0.00 33.38 1.78
7377 10222 6.264518 TGAGGGACCAAAAACATACTTCTTTC 59.735 38.462 0.00 0.00 0.00 2.62
7378 10223 6.133356 TGAGGGACCAAAAACATACTTCTTT 58.867 36.000 0.00 0.00 0.00 2.52
7379 10224 5.701224 TGAGGGACCAAAAACATACTTCTT 58.299 37.500 0.00 0.00 0.00 2.52
7380 10225 5.319043 TGAGGGACCAAAAACATACTTCT 57.681 39.130 0.00 0.00 0.00 2.85
7381 10226 5.535030 ACTTGAGGGACCAAAAACATACTTC 59.465 40.000 0.00 0.00 0.00 3.01
7444 10289 4.416848 AGACTTGAGGGGCCAAATGTATAT 59.583 41.667 4.39 0.00 0.00 0.86
7616 10462 7.689299 AGCATATAAGCATATTGGACACCTTA 58.311 34.615 2.37 0.00 36.85 2.69
7704 10552 3.009723 CCGCCTGATGAACAGTACATTT 58.990 45.455 0.00 0.00 44.40 2.32
7708 10556 2.094762 AACCGCCTGATGAACAGTAC 57.905 50.000 0.00 0.00 44.40 2.73
7852 10701 5.692115 ATGTTTTTGGTCCCTCAAGTTTT 57.308 34.783 0.00 0.00 0.00 2.43
7892 10741 8.918116 GGATGCATCTATCTGTCTATATACCAA 58.082 37.037 25.28 0.00 0.00 3.67
7893 10742 7.229506 CGGATGCATCTATCTGTCTATATACCA 59.770 40.741 25.28 0.00 0.00 3.25
7894 10743 7.308891 CCGGATGCATCTATCTGTCTATATACC 60.309 44.444 25.28 3.01 32.65 2.73
7895 10744 7.445707 TCCGGATGCATCTATCTGTCTATATAC 59.554 40.741 25.28 2.83 32.65 1.47
7896 10745 7.445707 GTCCGGATGCATCTATCTGTCTATATA 59.554 40.741 25.28 0.00 32.65 0.86
7897 10746 6.264292 GTCCGGATGCATCTATCTGTCTATAT 59.736 42.308 25.28 0.00 32.65 0.86
7898 10747 5.590663 GTCCGGATGCATCTATCTGTCTATA 59.409 44.000 25.28 0.00 32.65 1.31
7899 10748 4.400884 GTCCGGATGCATCTATCTGTCTAT 59.599 45.833 25.28 0.00 32.65 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.