Multiple sequence alignment - TraesCS1D01G327000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G327000 chr1D 100.000 4982 0 0 1 4982 419461750 419466731 0.000000e+00 9201.0
1 TraesCS1D01G327000 chr1D 92.471 518 31 4 1 513 277088908 277088394 0.000000e+00 734.0
2 TraesCS1D01G327000 chr1D 92.248 516 36 3 1 514 433297814 433297301 0.000000e+00 728.0
3 TraesCS1D01G327000 chr1D 94.444 36 2 0 1262 1297 10740628 10740663 6.970000e-04 56.5
4 TraesCS1D01G327000 chr1D 100.000 29 0 0 2973 3001 419464585 419464613 3.000000e-03 54.7
5 TraesCS1D01G327000 chr1D 100.000 29 0 0 2836 2864 419464722 419464750 3.000000e-03 54.7
6 TraesCS1D01G327000 chr1A 89.188 2673 194 50 1840 4473 516370838 516373454 0.000000e+00 3247.0
7 TraesCS1D01G327000 chr1A 89.887 1058 56 36 683 1712 516369484 516370518 0.000000e+00 1314.0
8 TraesCS1D01G327000 chr1A 82.620 397 36 13 4552 4939 516374652 516375024 2.240000e-83 320.0
9 TraesCS1D01G327000 chr1A 88.496 113 8 4 1903 2013 513167460 513167569 1.130000e-26 132.0
10 TraesCS1D01G327000 chr1A 94.444 36 2 0 1262 1297 12918879 12918914 6.970000e-04 56.5
11 TraesCS1D01G327000 chr1A 100.000 29 0 0 2836 2864 516371948 516371976 3.000000e-03 54.7
12 TraesCS1D01G327000 chr1B 86.814 2442 197 69 2468 4852 566602750 566605123 0.000000e+00 2610.0
13 TraesCS1D01G327000 chr1B 85.865 1514 112 61 550 2013 566600950 566602411 0.000000e+00 1517.0
14 TraesCS1D01G327000 chr1B 84.111 686 73 21 930 1599 127644001 127644666 9.100000e-177 630.0
15 TraesCS1D01G327000 chr1B 83.442 308 30 14 1301 1599 78447123 78446828 2.960000e-67 267.0
16 TraesCS1D01G327000 chr1B 88.496 113 8 4 1903 2013 86950859 86950968 1.130000e-26 132.0
17 TraesCS1D01G327000 chr1B 94.286 35 2 0 2017 2051 328153994 328154028 3.000000e-03 54.7
18 TraesCS1D01G327000 chr1B 100.000 29 0 0 2836 2864 566603227 566603255 3.000000e-03 54.7
19 TraesCS1D01G327000 chr4D 94.605 519 24 3 1 516 396622623 396622106 0.000000e+00 800.0
20 TraesCS1D01G327000 chr4D 94.175 515 27 3 1 513 22557147 22556634 0.000000e+00 782.0
21 TraesCS1D01G327000 chr6D 94.553 514 25 2 1 511 6552158 6552671 0.000000e+00 791.0
22 TraesCS1D01G327000 chr6D 92.218 514 35 4 1 510 94749314 94749826 0.000000e+00 723.0
23 TraesCS1D01G327000 chr6D 89.623 106 8 3 1908 2013 225836412 225836310 1.130000e-26 132.0
24 TraesCS1D01G327000 chr3D 93.177 513 30 4 1 511 427229436 427228927 0.000000e+00 749.0
25 TraesCS1D01G327000 chr3D 91.477 528 38 6 1 523 536145617 536145092 0.000000e+00 719.0
26 TraesCS1D01G327000 chr3D 91.852 135 11 0 3030 3164 597180031 597180165 6.580000e-44 189.0
27 TraesCS1D01G327000 chr3D 91.111 135 12 0 3030 3164 577344821 577344687 3.060000e-42 183.0
28 TraesCS1D01G327000 chr3D 88.333 120 6 4 2873 2985 577344945 577344827 2.420000e-28 137.0
29 TraesCS1D01G327000 chr3D 88.333 120 6 4 2873 2985 597179907 597180025 2.420000e-28 137.0
30 TraesCS1D01G327000 chr3D 96.970 33 1 0 3180 3212 597180167 597180199 6.970000e-04 56.5
31 TraesCS1D01G327000 chr7D 92.456 517 34 4 1 513 71620841 71621356 0.000000e+00 734.0
32 TraesCS1D01G327000 chr6B 86.202 674 77 9 886 1550 371117001 371117667 0.000000e+00 715.0
33 TraesCS1D01G327000 chr7B 84.138 725 64 24 886 1596 630363182 630363869 0.000000e+00 654.0
34 TraesCS1D01G327000 chr4B 82.669 727 91 23 886 1599 267074519 267075223 3.300000e-171 612.0
35 TraesCS1D01G327000 chr5D 81.500 800 95 28 2056 2840 565176727 565175966 4.260000e-170 608.0
36 TraesCS1D01G327000 chr5D 94.286 35 2 0 2017 2051 460038783 460038817 3.000000e-03 54.7
37 TraesCS1D01G327000 chr2D 84.142 618 52 26 2365 2971 187525991 187525409 1.570000e-154 556.0
38 TraesCS1D01G327000 chr2D 79.334 721 95 30 2053 2757 604242720 604243402 1.630000e-124 457.0
39 TraesCS1D01G327000 chr2D 83.333 210 24 6 1389 1598 604241767 604241965 3.060000e-42 183.0
40 TraesCS1D01G327000 chr3B 80.110 724 80 31 2258 2972 357553294 357552626 9.700000e-132 481.0
41 TraesCS1D01G327000 chr2A 81.609 609 58 22 2386 2971 200173893 200173316 5.880000e-124 455.0
42 TraesCS1D01G327000 chr2A 78.038 683 97 27 2054 2722 508080034 508080677 1.010000e-101 381.0
43 TraesCS1D01G327000 chr2A 100.000 28 0 0 2017 2044 42321684 42321657 9.000000e-03 52.8
44 TraesCS1D01G327000 chr3A 84.615 364 38 10 2620 2981 731220642 731220295 3.690000e-91 346.0
45 TraesCS1D01G327000 chr5B 80.238 420 38 13 2873 3292 708517500 708517874 1.770000e-69 274.0
46 TraesCS1D01G327000 chr7A 89.623 106 8 3 1908 2013 30689340 30689238 1.130000e-26 132.0
47 TraesCS1D01G327000 chr7A 88.496 113 8 4 1903 2013 70045483 70045592 1.130000e-26 132.0
48 TraesCS1D01G327000 chr7A 89.623 106 8 3 1908 2013 681657658 681657556 1.130000e-26 132.0
49 TraesCS1D01G327000 chr4A 89.623 106 8 3 1908 2013 610026618 610026516 1.130000e-26 132.0
50 TraesCS1D01G327000 chr6A 94.286 35 2 0 2017 2051 598614874 598614840 3.000000e-03 54.7
51 TraesCS1D01G327000 chr6A 94.286 35 2 0 2017 2051 598617181 598617147 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G327000 chr1D 419461750 419466731 4981 False 3103.466667 9201 100.00000 1 4982 3 chr1D.!!$F2 4981
1 TraesCS1D01G327000 chr1D 277088394 277088908 514 True 734.000000 734 92.47100 1 513 1 chr1D.!!$R1 512
2 TraesCS1D01G327000 chr1D 433297301 433297814 513 True 728.000000 728 92.24800 1 514 1 chr1D.!!$R2 513
3 TraesCS1D01G327000 chr1A 516369484 516375024 5540 False 1233.925000 3247 90.42375 683 4939 4 chr1A.!!$F3 4256
4 TraesCS1D01G327000 chr1B 566600950 566605123 4173 False 1393.900000 2610 90.89300 550 4852 3 chr1B.!!$F4 4302
5 TraesCS1D01G327000 chr1B 127644001 127644666 665 False 630.000000 630 84.11100 930 1599 1 chr1B.!!$F2 669
6 TraesCS1D01G327000 chr4D 396622106 396622623 517 True 800.000000 800 94.60500 1 516 1 chr4D.!!$R2 515
7 TraesCS1D01G327000 chr4D 22556634 22557147 513 True 782.000000 782 94.17500 1 513 1 chr4D.!!$R1 512
8 TraesCS1D01G327000 chr6D 6552158 6552671 513 False 791.000000 791 94.55300 1 511 1 chr6D.!!$F1 510
9 TraesCS1D01G327000 chr6D 94749314 94749826 512 False 723.000000 723 92.21800 1 510 1 chr6D.!!$F2 509
10 TraesCS1D01G327000 chr3D 427228927 427229436 509 True 749.000000 749 93.17700 1 511 1 chr3D.!!$R1 510
11 TraesCS1D01G327000 chr3D 536145092 536145617 525 True 719.000000 719 91.47700 1 523 1 chr3D.!!$R2 522
12 TraesCS1D01G327000 chr7D 71620841 71621356 515 False 734.000000 734 92.45600 1 513 1 chr7D.!!$F1 512
13 TraesCS1D01G327000 chr6B 371117001 371117667 666 False 715.000000 715 86.20200 886 1550 1 chr6B.!!$F1 664
14 TraesCS1D01G327000 chr7B 630363182 630363869 687 False 654.000000 654 84.13800 886 1596 1 chr7B.!!$F1 710
15 TraesCS1D01G327000 chr4B 267074519 267075223 704 False 612.000000 612 82.66900 886 1599 1 chr4B.!!$F1 713
16 TraesCS1D01G327000 chr5D 565175966 565176727 761 True 608.000000 608 81.50000 2056 2840 1 chr5D.!!$R1 784
17 TraesCS1D01G327000 chr2D 187525409 187525991 582 True 556.000000 556 84.14200 2365 2971 1 chr2D.!!$R1 606
18 TraesCS1D01G327000 chr2D 604241767 604243402 1635 False 320.000000 457 81.33350 1389 2757 2 chr2D.!!$F1 1368
19 TraesCS1D01G327000 chr3B 357552626 357553294 668 True 481.000000 481 80.11000 2258 2972 1 chr3B.!!$R1 714
20 TraesCS1D01G327000 chr2A 200173316 200173893 577 True 455.000000 455 81.60900 2386 2971 1 chr2A.!!$R2 585
21 TraesCS1D01G327000 chr2A 508080034 508080677 643 False 381.000000 381 78.03800 2054 2722 1 chr2A.!!$F1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 391 0.028902 GCGCGGTCATAAAATGGGTC 59.971 55.0 8.83 0.0 0.00 4.46 F
670 676 0.029834 GGCTGCTGTGTGTGTTCAAG 59.970 55.0 0.00 0.0 0.00 3.02 F
680 686 0.105964 TGTGTTCAAGTCCCCGTCTG 59.894 55.0 0.00 0.0 0.00 3.51 F
1769 2454 0.179163 GTTGATTGGTTAGCGCCTGC 60.179 55.0 2.29 0.0 43.24 4.85 F
2854 3590 0.464554 GATGGCTACAAGGAGGTGCC 60.465 60.0 0.00 0.0 43.49 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 2435 0.179163 GCAGGCGCTAACCAATCAAC 60.179 55.0 7.64 0.0 34.30 3.18 R
2417 3133 0.508641 CGTGGAAACAGAGACTTGCG 59.491 55.0 0.00 0.0 44.46 4.85 R
2571 3289 2.099141 ACGACAATCCAGACCACATG 57.901 50.0 0.00 0.0 0.00 3.21 R
3046 3795 0.250295 TAGCGCTGCCACATATTCCC 60.250 55.0 22.90 0.0 0.00 3.97 R
4056 4827 0.030603 GGATTCAGGAGGGGAGGAGT 60.031 60.0 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 160 3.541713 GGCGAGGCTAGTGAGGGG 61.542 72.222 0.00 0.00 0.00 4.79
197 199 0.606673 GGACAAAGTGTGGAGGGAGC 60.607 60.000 0.00 0.00 0.00 4.70
289 295 4.877619 GCTAGGCCGCTTTCCCCC 62.878 72.222 0.00 0.00 0.00 5.40
290 296 4.547367 CTAGGCCGCTTTCCCCCG 62.547 72.222 0.00 0.00 0.00 5.73
315 321 3.431725 GAACCTTTCCCCGCGCTG 61.432 66.667 5.56 0.00 0.00 5.18
329 335 2.727544 GCTGGAGCGCCAAAAACA 59.272 55.556 11.38 0.00 45.41 2.83
330 336 1.372128 GCTGGAGCGCCAAAAACAG 60.372 57.895 11.38 4.99 45.41 3.16
331 337 1.286880 CTGGAGCGCCAAAAACAGG 59.713 57.895 11.38 0.00 45.41 4.00
332 338 2.146073 CTGGAGCGCCAAAAACAGGG 62.146 60.000 11.38 0.00 45.41 4.45
333 339 2.049156 GAGCGCCAAAAACAGGGC 60.049 61.111 2.29 0.00 46.80 5.19
337 343 2.050442 GCCAAAAACAGGGCGACG 60.050 61.111 0.00 0.00 40.93 5.12
338 344 2.642700 CCAAAAACAGGGCGACGG 59.357 61.111 0.00 0.00 0.00 4.79
339 345 2.050442 CAAAAACAGGGCGACGGC 60.050 61.111 13.84 13.84 38.90 5.68
340 346 2.517402 AAAAACAGGGCGACGGCA 60.517 55.556 23.66 0.00 42.47 5.69
341 347 1.901464 AAAAACAGGGCGACGGCAT 60.901 52.632 23.66 14.13 42.47 4.40
342 348 2.141122 AAAAACAGGGCGACGGCATG 62.141 55.000 30.66 30.66 45.09 4.06
354 360 3.896133 GGCATGGACGCTGGCATG 61.896 66.667 0.00 0.00 38.90 4.06
355 361 2.825387 GCATGGACGCTGGCATGA 60.825 61.111 0.00 0.00 0.00 3.07
356 362 2.191513 GCATGGACGCTGGCATGAT 61.192 57.895 0.00 0.00 0.00 2.45
357 363 1.947013 CATGGACGCTGGCATGATC 59.053 57.895 0.00 0.00 0.00 2.92
358 364 0.534427 CATGGACGCTGGCATGATCT 60.534 55.000 0.00 0.00 0.00 2.75
359 365 1.051008 ATGGACGCTGGCATGATCTA 58.949 50.000 0.00 0.00 0.00 1.98
360 366 0.829990 TGGACGCTGGCATGATCTAA 59.170 50.000 0.00 0.00 0.00 2.10
361 367 1.209261 TGGACGCTGGCATGATCTAAA 59.791 47.619 0.00 0.00 0.00 1.85
362 368 2.288666 GGACGCTGGCATGATCTAAAA 58.711 47.619 0.00 0.00 0.00 1.52
363 369 2.032178 GGACGCTGGCATGATCTAAAAC 59.968 50.000 0.00 0.00 0.00 2.43
364 370 1.665679 ACGCTGGCATGATCTAAAACG 59.334 47.619 0.00 0.00 0.00 3.60
365 371 1.595489 CGCTGGCATGATCTAAAACGC 60.595 52.381 0.00 0.00 0.00 4.84
366 372 1.595489 GCTGGCATGATCTAAAACGCG 60.595 52.381 3.53 3.53 0.00 6.01
367 373 0.376852 TGGCATGATCTAAAACGCGC 59.623 50.000 5.73 0.00 0.00 6.86
368 374 0.654472 GGCATGATCTAAAACGCGCG 60.654 55.000 30.96 30.96 0.00 6.86
369 375 1.255635 GCATGATCTAAAACGCGCGC 61.256 55.000 32.58 23.91 0.00 6.86
380 386 2.323105 CGCGCGCGGTCATAAAAT 59.677 55.556 43.28 0.00 35.56 1.82
381 387 1.998257 CGCGCGCGGTCATAAAATG 60.998 57.895 43.28 12.95 35.56 2.32
382 388 1.654137 GCGCGCGGTCATAAAATGG 60.654 57.895 33.06 0.00 0.00 3.16
383 389 1.010125 CGCGCGGTCATAAAATGGG 60.010 57.895 24.84 0.00 0.00 4.00
384 390 1.711060 CGCGCGGTCATAAAATGGGT 61.711 55.000 24.84 0.00 0.00 4.51
385 391 0.028902 GCGCGGTCATAAAATGGGTC 59.971 55.000 8.83 0.00 0.00 4.46
386 392 1.374560 CGCGGTCATAAAATGGGTCA 58.625 50.000 0.00 0.00 0.00 4.02
387 393 1.330521 CGCGGTCATAAAATGGGTCAG 59.669 52.381 0.00 0.00 0.00 3.51
388 394 1.065551 GCGGTCATAAAATGGGTCAGC 59.934 52.381 0.00 0.00 0.00 4.26
389 395 1.676006 CGGTCATAAAATGGGTCAGCC 59.324 52.381 0.00 0.00 0.00 4.85
414 420 3.659092 CGCACTGCCGAGCCAAAA 61.659 61.111 0.00 0.00 0.00 2.44
415 421 2.050077 GCACTGCCGAGCCAAAAC 60.050 61.111 0.00 0.00 0.00 2.43
416 422 2.555547 GCACTGCCGAGCCAAAACT 61.556 57.895 0.00 0.00 0.00 2.66
417 423 1.234615 GCACTGCCGAGCCAAAACTA 61.235 55.000 0.00 0.00 0.00 2.24
418 424 1.234821 CACTGCCGAGCCAAAACTAA 58.765 50.000 0.00 0.00 0.00 2.24
419 425 1.606668 CACTGCCGAGCCAAAACTAAA 59.393 47.619 0.00 0.00 0.00 1.85
420 426 2.034053 CACTGCCGAGCCAAAACTAAAA 59.966 45.455 0.00 0.00 0.00 1.52
421 427 2.293399 ACTGCCGAGCCAAAACTAAAAG 59.707 45.455 0.00 0.00 0.00 2.27
422 428 2.552315 CTGCCGAGCCAAAACTAAAAGA 59.448 45.455 0.00 0.00 0.00 2.52
423 429 2.552315 TGCCGAGCCAAAACTAAAAGAG 59.448 45.455 0.00 0.00 0.00 2.85
424 430 2.095212 GCCGAGCCAAAACTAAAAGAGG 60.095 50.000 0.00 0.00 0.00 3.69
425 431 3.408634 CCGAGCCAAAACTAAAAGAGGA 58.591 45.455 0.00 0.00 0.00 3.71
426 432 3.188667 CCGAGCCAAAACTAAAAGAGGAC 59.811 47.826 0.00 0.00 0.00 3.85
427 433 3.120649 CGAGCCAAAACTAAAAGAGGACG 60.121 47.826 0.00 0.00 0.00 4.79
428 434 3.146847 AGCCAAAACTAAAAGAGGACGG 58.853 45.455 0.00 0.00 0.00 4.79
429 435 3.143728 GCCAAAACTAAAAGAGGACGGA 58.856 45.455 0.00 0.00 0.00 4.69
430 436 3.058432 GCCAAAACTAAAAGAGGACGGAC 60.058 47.826 0.00 0.00 0.00 4.79
431 437 3.185797 CCAAAACTAAAAGAGGACGGACG 59.814 47.826 0.00 0.00 0.00 4.79
432 438 2.738013 AACTAAAAGAGGACGGACGG 57.262 50.000 0.00 0.00 0.00 4.79
433 439 0.245813 ACTAAAAGAGGACGGACGGC 59.754 55.000 0.00 0.00 0.00 5.68
434 440 0.801067 CTAAAAGAGGACGGACGGCG 60.801 60.000 4.80 4.80 0.00 6.46
435 441 2.216750 TAAAAGAGGACGGACGGCGG 62.217 60.000 13.24 0.00 0.00 6.13
458 464 3.666253 CGGCCAACCCAAACGGAC 61.666 66.667 2.24 0.00 34.64 4.79
459 465 2.519780 GGCCAACCCAAACGGACA 60.520 61.111 0.00 0.00 34.64 4.02
460 466 2.128507 GGCCAACCCAAACGGACAA 61.129 57.895 0.00 0.00 34.64 3.18
461 467 1.677637 GGCCAACCCAAACGGACAAA 61.678 55.000 0.00 0.00 34.64 2.83
462 468 0.175989 GCCAACCCAAACGGACAAAA 59.824 50.000 0.00 0.00 34.64 2.44
463 469 1.405661 GCCAACCCAAACGGACAAAAA 60.406 47.619 0.00 0.00 34.64 1.94
482 488 4.199130 CGGACAAAAACGCCGTTC 57.801 55.556 1.60 0.00 40.17 3.95
483 489 1.352404 CGGACAAAAACGCCGTTCA 59.648 52.632 1.60 0.00 40.17 3.18
484 490 0.040781 CGGACAAAAACGCCGTTCAT 60.041 50.000 1.60 0.00 40.17 2.57
485 491 1.598430 CGGACAAAAACGCCGTTCATT 60.598 47.619 1.60 0.00 40.17 2.57
486 492 2.465855 GGACAAAAACGCCGTTCATTT 58.534 42.857 1.60 0.00 0.00 2.32
487 493 2.217620 GGACAAAAACGCCGTTCATTTG 59.782 45.455 19.90 19.90 32.70 2.32
488 494 3.109619 GACAAAAACGCCGTTCATTTGA 58.890 40.909 25.45 0.00 31.63 2.69
489 495 3.112580 ACAAAAACGCCGTTCATTTGAG 58.887 40.909 25.45 8.02 31.63 3.02
490 496 3.112580 CAAAAACGCCGTTCATTTGAGT 58.887 40.909 17.76 0.00 29.80 3.41
491 497 2.681152 AAACGCCGTTCATTTGAGTC 57.319 45.000 1.60 0.00 0.00 3.36
492 498 0.511221 AACGCCGTTCATTTGAGTCG 59.489 50.000 0.00 0.00 0.00 4.18
493 499 1.289109 ACGCCGTTCATTTGAGTCGG 61.289 55.000 16.41 16.41 42.08 4.79
495 501 1.794222 CCGTTCATTTGAGTCGGCC 59.206 57.895 11.27 0.00 36.91 6.13
496 502 1.644786 CCGTTCATTTGAGTCGGCCC 61.645 60.000 0.00 0.00 36.91 5.80
497 503 1.794222 GTTCATTTGAGTCGGCCCG 59.206 57.895 0.00 0.00 0.00 6.13
498 504 0.953960 GTTCATTTGAGTCGGCCCGT 60.954 55.000 1.63 0.00 0.00 5.28
499 505 0.250553 TTCATTTGAGTCGGCCCGTT 60.251 50.000 1.63 0.00 0.00 4.44
500 506 0.953471 TCATTTGAGTCGGCCCGTTG 60.953 55.000 1.63 0.00 0.00 4.10
501 507 1.674322 ATTTGAGTCGGCCCGTTGG 60.674 57.895 1.63 0.00 0.00 3.77
502 508 2.119484 ATTTGAGTCGGCCCGTTGGA 62.119 55.000 1.63 0.00 0.00 3.53
503 509 2.725203 TTTGAGTCGGCCCGTTGGAG 62.725 60.000 1.63 0.00 0.00 3.86
504 510 3.692406 GAGTCGGCCCGTTGGAGT 61.692 66.667 1.63 0.00 0.00 3.85
505 511 3.236003 GAGTCGGCCCGTTGGAGTT 62.236 63.158 1.63 0.00 0.00 3.01
506 512 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
509 515 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
510 516 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
511 517 1.600916 GCCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
512 518 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
513 519 1.679032 GCCCGTTGGAGTTGCTCTTAT 60.679 52.381 0.00 0.00 0.00 1.73
514 520 2.711542 CCCGTTGGAGTTGCTCTTATT 58.288 47.619 0.00 0.00 0.00 1.40
515 521 3.869065 CCCGTTGGAGTTGCTCTTATTA 58.131 45.455 0.00 0.00 0.00 0.98
516 522 4.451900 CCCGTTGGAGTTGCTCTTATTAT 58.548 43.478 0.00 0.00 0.00 1.28
517 523 5.607477 CCCGTTGGAGTTGCTCTTATTATA 58.393 41.667 0.00 0.00 0.00 0.98
518 524 6.231211 CCCGTTGGAGTTGCTCTTATTATAT 58.769 40.000 0.00 0.00 0.00 0.86
519 525 6.710744 CCCGTTGGAGTTGCTCTTATTATATT 59.289 38.462 0.00 0.00 0.00 1.28
520 526 7.307989 CCCGTTGGAGTTGCTCTTATTATATTG 60.308 40.741 0.00 0.00 0.00 1.90
521 527 7.441157 CCGTTGGAGTTGCTCTTATTATATTGA 59.559 37.037 0.00 0.00 0.00 2.57
522 528 8.993121 CGTTGGAGTTGCTCTTATTATATTGAT 58.007 33.333 0.00 0.00 0.00 2.57
540 546 6.633325 ATTGATTGAAGAAGGAGAAGGAGA 57.367 37.500 0.00 0.00 0.00 3.71
541 547 6.439636 TTGATTGAAGAAGGAGAAGGAGAA 57.560 37.500 0.00 0.00 0.00 2.87
542 548 6.047511 TGATTGAAGAAGGAGAAGGAGAAG 57.952 41.667 0.00 0.00 0.00 2.85
543 549 5.782331 TGATTGAAGAAGGAGAAGGAGAAGA 59.218 40.000 0.00 0.00 0.00 2.87
544 550 6.270927 TGATTGAAGAAGGAGAAGGAGAAGAA 59.729 38.462 0.00 0.00 0.00 2.52
545 551 5.736951 TGAAGAAGGAGAAGGAGAAGAAG 57.263 43.478 0.00 0.00 0.00 2.85
546 552 5.398236 TGAAGAAGGAGAAGGAGAAGAAGA 58.602 41.667 0.00 0.00 0.00 2.87
547 553 5.480073 TGAAGAAGGAGAAGGAGAAGAAGAG 59.520 44.000 0.00 0.00 0.00 2.85
548 554 5.269554 AGAAGGAGAAGGAGAAGAAGAGA 57.730 43.478 0.00 0.00 0.00 3.10
549 555 5.650283 AGAAGGAGAAGGAGAAGAAGAGAA 58.350 41.667 0.00 0.00 0.00 2.87
550 556 6.081356 AGAAGGAGAAGGAGAAGAAGAGAAA 58.919 40.000 0.00 0.00 0.00 2.52
551 557 6.556874 AGAAGGAGAAGGAGAAGAAGAGAAAA 59.443 38.462 0.00 0.00 0.00 2.29
552 558 6.755542 AGGAGAAGGAGAAGAAGAGAAAAA 57.244 37.500 0.00 0.00 0.00 1.94
574 580 3.167485 ACACTTGTTACCCGAGATACCA 58.833 45.455 0.00 0.00 0.00 3.25
582 588 5.878116 TGTTACCCGAGATACCAGATTTTTG 59.122 40.000 0.00 0.00 0.00 2.44
665 671 4.935495 CCCGGCTGCTGTGTGTGT 62.935 66.667 7.82 0.00 0.00 3.72
666 672 2.901840 CCGGCTGCTGTGTGTGTT 60.902 61.111 7.82 0.00 0.00 3.32
668 674 2.179547 CGGCTGCTGTGTGTGTTCA 61.180 57.895 0.00 0.00 0.00 3.18
669 675 1.713937 CGGCTGCTGTGTGTGTTCAA 61.714 55.000 0.00 0.00 0.00 2.69
670 676 0.029834 GGCTGCTGTGTGTGTTCAAG 59.970 55.000 0.00 0.00 0.00 3.02
671 677 0.734889 GCTGCTGTGTGTGTTCAAGT 59.265 50.000 0.00 0.00 0.00 3.16
673 679 1.331756 CTGCTGTGTGTGTTCAAGTCC 59.668 52.381 0.00 0.00 0.00 3.85
674 680 0.663153 GCTGTGTGTGTTCAAGTCCC 59.337 55.000 0.00 0.00 0.00 4.46
675 681 1.308998 CTGTGTGTGTTCAAGTCCCC 58.691 55.000 0.00 0.00 0.00 4.81
676 682 0.462937 TGTGTGTGTTCAAGTCCCCG 60.463 55.000 0.00 0.00 0.00 5.73
680 686 0.105964 TGTGTTCAAGTCCCCGTCTG 59.894 55.000 0.00 0.00 0.00 3.51
681 687 0.602905 GTGTTCAAGTCCCCGTCTGG 60.603 60.000 0.00 0.00 0.00 3.86
685 691 3.003763 AAGTCCCCGTCTGGCTCC 61.004 66.667 0.00 0.00 0.00 4.70
831 860 0.904649 CAAAATTTCCTGCCCCTCCC 59.095 55.000 0.00 0.00 0.00 4.30
832 861 0.252696 AAAATTTCCTGCCCCTCCCC 60.253 55.000 0.00 0.00 0.00 4.81
833 862 2.181523 AAATTTCCTGCCCCTCCCCC 62.182 60.000 0.00 0.00 0.00 5.40
834 863 3.620680 ATTTCCTGCCCCTCCCCCT 62.621 63.158 0.00 0.00 0.00 4.79
835 864 4.760220 TTCCTGCCCCTCCCCCTC 62.760 72.222 0.00 0.00 0.00 4.30
844 873 4.179599 CTCCCCCTCCCCCTCCTC 62.180 77.778 0.00 0.00 0.00 3.71
877 906 1.847088 TCCTTCTCCTCCGATCTCTCA 59.153 52.381 0.00 0.00 0.00 3.27
1492 1581 4.818534 TGTCAATCTCTTGTTCTGCAAC 57.181 40.909 0.00 0.00 33.87 4.17
1494 1583 4.035558 TGTCAATCTCTTGTTCTGCAACAC 59.964 41.667 0.00 0.00 42.46 3.32
1495 1584 4.274459 GTCAATCTCTTGTTCTGCAACACT 59.726 41.667 0.00 0.00 42.46 3.55
1496 1585 4.883585 TCAATCTCTTGTTCTGCAACACTT 59.116 37.500 0.00 0.00 42.46 3.16
1497 1586 5.008019 TCAATCTCTTGTTCTGCAACACTTC 59.992 40.000 0.00 0.00 42.46 3.01
1498 1587 4.142609 TCTCTTGTTCTGCAACACTTCT 57.857 40.909 0.00 0.00 42.46 2.85
1499 1588 4.517285 TCTCTTGTTCTGCAACACTTCTT 58.483 39.130 0.00 0.00 42.46 2.52
1601 1699 2.920524 AGAGATCGAGATGTGGTACGT 58.079 47.619 0.00 0.00 0.00 3.57
1602 1700 2.614520 AGAGATCGAGATGTGGTACGTG 59.385 50.000 0.00 0.00 0.00 4.49
1603 1701 1.065701 AGATCGAGATGTGGTACGTGC 59.934 52.381 0.00 0.00 0.00 5.34
1604 1702 0.815095 ATCGAGATGTGGTACGTGCA 59.185 50.000 5.86 0.00 0.00 4.57
1605 1703 0.815095 TCGAGATGTGGTACGTGCAT 59.185 50.000 5.86 1.30 0.00 3.96
1623 1728 7.578852 ACGTGCATATCAAAATCATAGTGATG 58.421 34.615 0.00 0.00 37.15 3.07
1646 2102 4.442192 GCTAAAGATCTGAATGACCGAGGT 60.442 45.833 0.00 0.00 0.00 3.85
1712 2169 1.405256 GCAGCAGCTGACACATACTCT 60.405 52.381 27.39 0.00 37.91 3.24
1729 2414 1.016415 TCTAGCTAACCTCCCCCTGT 58.984 55.000 0.00 0.00 0.00 4.00
1750 2435 7.813148 CCCTGTCATAACTCATTAGGTAATACG 59.187 40.741 0.00 0.00 0.00 3.06
1766 2451 1.361793 TACGTTGATTGGTTAGCGCC 58.638 50.000 2.29 0.00 0.00 6.53
1769 2454 0.179163 GTTGATTGGTTAGCGCCTGC 60.179 55.000 2.29 0.00 43.24 4.85
2044 2746 8.352137 TCCGTCCCATAATATAAGATCGTTTA 57.648 34.615 0.00 0.00 0.00 2.01
2118 2821 2.666317 AGGTGCTGTTGCTTTTTAGGT 58.334 42.857 0.00 0.00 40.48 3.08
2120 2823 2.360801 GGTGCTGTTGCTTTTTAGGTCA 59.639 45.455 0.00 0.00 40.48 4.02
2177 2888 1.468054 GCTTTTGCCATGGAAGTAGCG 60.468 52.381 18.40 0.00 40.15 4.26
2181 2892 0.815213 TGCCATGGAAGTAGCGATGC 60.815 55.000 18.40 0.00 0.00 3.91
2201 2912 1.867233 CGCTGCTTCAGTGTGTAGTTT 59.133 47.619 0.00 0.00 37.23 2.66
2283 2994 4.096984 CCAGCAATCCAGAATTGTAGGTTC 59.903 45.833 0.30 0.00 45.55 3.62
2439 3155 2.612212 GCAAGTCTCTGTTTCCACGAAA 59.388 45.455 0.00 0.00 0.00 3.46
2463 3181 5.305585 TCACTCCTTTGGACTTGTATTGTC 58.694 41.667 0.00 0.00 0.00 3.18
2465 3183 5.765182 CACTCCTTTGGACTTGTATTGTCTT 59.235 40.000 0.00 0.00 35.04 3.01
2545 3263 6.421202 GTCGGTGCTACCTCATTTCTTATTAG 59.579 42.308 4.21 0.00 35.66 1.73
2571 3289 2.140717 CACACCAAGTACTTCCGGTTC 58.859 52.381 13.56 0.00 0.00 3.62
2653 3388 5.642063 GGAAGGAATAAACAAGATCACGACA 59.358 40.000 0.00 0.00 0.00 4.35
2746 3482 2.104792 TGGGCTCATGACCTATGCTTAC 59.895 50.000 12.27 2.22 43.49 2.34
2806 3542 1.060122 GATTACCCGTTTCGTGAAGCG 59.940 52.381 11.23 11.23 43.17 4.68
2840 3576 4.681483 GCAACAAGAACAAAGTAAGATGGC 59.319 41.667 0.00 0.00 0.00 4.40
2842 3578 6.293955 GCAACAAGAACAAAGTAAGATGGCTA 60.294 38.462 0.00 0.00 0.00 3.93
2844 3580 6.296026 ACAAGAACAAAGTAAGATGGCTACA 58.704 36.000 0.00 0.00 0.00 2.74
2845 3581 6.770785 ACAAGAACAAAGTAAGATGGCTACAA 59.229 34.615 0.00 0.00 0.00 2.41
2846 3582 7.041098 ACAAGAACAAAGTAAGATGGCTACAAG 60.041 37.037 0.00 0.00 0.00 3.16
2848 3584 5.499004 ACAAAGTAAGATGGCTACAAGGA 57.501 39.130 0.00 0.00 0.00 3.36
2849 3585 5.491982 ACAAAGTAAGATGGCTACAAGGAG 58.508 41.667 0.00 0.00 0.00 3.69
2851 3587 3.725634 AGTAAGATGGCTACAAGGAGGT 58.274 45.455 0.00 0.00 0.00 3.85
2852 3588 3.452627 AGTAAGATGGCTACAAGGAGGTG 59.547 47.826 0.00 0.00 0.00 4.00
2853 3589 0.543749 AGATGGCTACAAGGAGGTGC 59.456 55.000 0.00 0.00 0.00 5.01
2854 3590 0.464554 GATGGCTACAAGGAGGTGCC 60.465 60.000 0.00 0.00 43.49 5.01
2867 3603 2.134789 AGGTGCCTCCTAGCAATTTG 57.865 50.000 0.00 0.00 46.19 2.32
2868 3604 1.355720 AGGTGCCTCCTAGCAATTTGT 59.644 47.619 0.00 0.00 46.19 2.83
2869 3605 1.745653 GGTGCCTCCTAGCAATTTGTC 59.254 52.381 0.00 0.00 46.19 3.18
2870 3606 2.619074 GGTGCCTCCTAGCAATTTGTCT 60.619 50.000 0.00 0.00 46.19 3.41
2871 3607 2.421424 GTGCCTCCTAGCAATTTGTCTG 59.579 50.000 0.00 0.00 46.19 3.51
2872 3608 1.403323 GCCTCCTAGCAATTTGTCTGC 59.597 52.381 0.00 0.00 40.24 4.26
2906 3654 1.131126 CCTTGAGCATGTTTAGGCACG 59.869 52.381 0.00 0.00 35.71 5.34
3046 3795 1.299541 CCCAGCAACCTATTAGCGTG 58.700 55.000 0.00 0.00 0.00 5.34
3067 3816 1.151668 GAATATGTGGCAGCGCTAGG 58.848 55.000 10.99 0.00 0.00 3.02
3200 3950 2.472059 CGATGGTCCATGCCCAACG 61.472 63.158 9.76 14.66 40.96 4.10
3243 3993 6.833416 CCTAATTGTGGGATATGGTTCTGAAA 59.167 38.462 0.00 0.00 0.00 2.69
3244 3994 7.341769 CCTAATTGTGGGATATGGTTCTGAAAA 59.658 37.037 0.00 0.00 0.00 2.29
3245 3995 5.975693 TTGTGGGATATGGTTCTGAAAAC 57.024 39.130 0.00 0.00 0.00 2.43
3332 4082 2.954753 GCACCGAAACACTGGCTCG 61.955 63.158 0.00 0.00 0.00 5.03
3407 4157 1.195115 CGAATCCTCCTCCTTCACCA 58.805 55.000 0.00 0.00 0.00 4.17
3410 4160 0.327000 ATCCTCCTCCTTCACCAGGG 60.327 60.000 0.00 0.00 44.12 4.45
3433 4183 2.432972 CCCAACCAAATGCAGCGC 60.433 61.111 0.00 0.00 0.00 5.92
3509 4259 2.034687 TGCCTTTCCTGGAGCTGC 59.965 61.111 0.00 0.00 0.00 5.25
3530 4280 2.871022 CTGTGAGCTGGATAATGCAGTC 59.129 50.000 0.00 0.00 38.17 3.51
3536 4286 2.915349 CTGGATAATGCAGTCTGCTGT 58.085 47.619 24.76 14.86 45.31 4.40
3584 4334 6.325596 CCATGACTATCCTATATGTGACACG 58.674 44.000 0.22 0.00 0.00 4.49
3617 4367 3.066760 GCTGCTTGAAGGTAAACACAAGT 59.933 43.478 0.00 0.00 40.88 3.16
3619 4369 4.265893 TGCTTGAAGGTAAACACAAGTGA 58.734 39.130 7.28 0.00 40.88 3.41
3634 4385 8.524870 AACACAAGTGATTTTATGCATTCTTC 57.475 30.769 3.54 0.00 0.00 2.87
3659 4410 3.311322 TGAGGTTTCGTCATGTTTGTGAC 59.689 43.478 0.00 0.00 43.90 3.67
3684 4436 0.475906 AACTGACCTGCCTGAAAGCT 59.524 50.000 0.00 0.00 0.00 3.74
3698 4450 5.358160 GCCTGAAAGCTTGATATGGTTAAGT 59.642 40.000 0.00 0.00 0.00 2.24
3711 4463 8.243426 TGATATGGTTAAGTTTGACAAATGCTC 58.757 33.333 3.49 0.00 0.00 4.26
3713 4465 5.830912 TGGTTAAGTTTGACAAATGCTCTG 58.169 37.500 3.49 0.00 0.00 3.35
3716 4468 6.460953 GGTTAAGTTTGACAAATGCTCTGGAA 60.461 38.462 3.49 0.00 0.00 3.53
3717 4469 5.796424 AAGTTTGACAAATGCTCTGGAAT 57.204 34.783 3.49 0.00 0.00 3.01
3721 4473 6.491403 AGTTTGACAAATGCTCTGGAATACTT 59.509 34.615 3.49 0.00 0.00 2.24
3726 4478 5.185828 ACAAATGCTCTGGAATACTTTTCCC 59.814 40.000 2.11 0.00 37.79 3.97
3752 4506 9.578576 CTCCATCTTTATTTTCTTCATATCCCA 57.421 33.333 0.00 0.00 0.00 4.37
3771 4525 6.548441 TCCCATTTCAGTTTTTGTACGTAG 57.452 37.500 0.00 0.00 0.00 3.51
3781 4535 5.975939 AGTTTTTGTACGTAGAGACTGTGTC 59.024 40.000 0.00 0.00 0.00 3.67
3782 4536 3.800929 TTGTACGTAGAGACTGTGTCG 57.199 47.619 0.00 0.00 37.67 4.35
3786 4540 2.344950 ACGTAGAGACTGTGTCGTAGG 58.655 52.381 0.00 2.13 37.67 3.18
3803 4560 6.714810 TGTCGTAGGTTAAGTTAGTCAGGTTA 59.285 38.462 0.00 0.00 0.00 2.85
3808 4565 6.766429 AGGTTAAGTTAGTCAGGTTACCAAG 58.234 40.000 3.51 0.00 0.00 3.61
3810 4567 3.697619 AGTTAGTCAGGTTACCAAGGC 57.302 47.619 3.51 0.00 0.00 4.35
3811 4568 2.976882 AGTTAGTCAGGTTACCAAGGCA 59.023 45.455 3.51 0.00 0.00 4.75
3820 4579 5.883673 TCAGGTTACCAAGGCATAAACATAC 59.116 40.000 3.51 0.00 0.00 2.39
3822 4581 6.321181 CAGGTTACCAAGGCATAAACATACAT 59.679 38.462 3.51 0.00 0.00 2.29
3845 4604 5.189928 TGAAACCGGATAAATGCTGTGTAT 58.810 37.500 9.46 0.00 0.00 2.29
3885 4644 4.798882 TGGTGAATTTACTGTTTCAGGGT 58.201 39.130 0.00 0.00 35.51 4.34
3903 4662 2.290960 GGGTAATGGCAACTTCTCCAGT 60.291 50.000 0.00 0.00 37.30 4.00
3915 4674 6.408662 GCAACTTCTCCAGTATAGAGGGAATT 60.409 42.308 0.00 0.00 32.94 2.17
3966 4725 3.256631 CCTCTTGGAATGGTTTGTTGGAG 59.743 47.826 0.00 0.00 34.57 3.86
3969 4728 2.676748 TGGAATGGTTTGTTGGAGCTT 58.323 42.857 0.00 0.00 0.00 3.74
4030 4789 5.591877 AGGTAAGATCATGCCAACTTGATTC 59.408 40.000 7.83 0.00 39.92 2.52
4031 4790 5.357878 GGTAAGATCATGCCAACTTGATTCA 59.642 40.000 0.00 0.00 39.92 2.57
4033 4792 5.769484 AGATCATGCCAACTTGATTCATC 57.231 39.130 0.00 0.00 39.92 2.92
4035 4794 2.684374 TCATGCCAACTTGATTCATCCG 59.316 45.455 0.00 0.00 0.00 4.18
4036 4795 1.462616 TGCCAACTTGATTCATCCGG 58.537 50.000 0.00 0.00 0.00 5.14
4038 4797 1.133025 GCCAACTTGATTCATCCGGTG 59.867 52.381 0.00 0.00 0.00 4.94
4042 4801 0.379669 CTTGATTCATCCGGTGCTGC 59.620 55.000 0.00 0.00 0.00 5.25
4046 4805 0.820891 ATTCATCCGGTGCTGCCATC 60.821 55.000 0.00 0.00 36.97 3.51
4048 4807 2.184830 CATCCGGTGCTGCCATCAG 61.185 63.158 0.00 0.00 43.16 2.90
4054 4825 2.743538 TGCTGCCATCAGTGCGAC 60.744 61.111 0.00 0.00 42.29 5.19
4056 4827 2.046988 CTGCCATCAGTGCGACCA 60.047 61.111 0.00 0.00 35.61 4.02
4073 4844 0.327000 CCACTCCTCCCCTCCTGAAT 60.327 60.000 0.00 0.00 0.00 2.57
4078 4849 1.059006 CCTCCCCTCCTGAATCCCTG 61.059 65.000 0.00 0.00 0.00 4.45
4079 4850 1.004758 TCCCCTCCTGAATCCCTGG 59.995 63.158 0.00 0.00 35.40 4.45
4082 4853 1.132500 CCCTCCTGAATCCCTGGTAC 58.868 60.000 0.00 0.00 35.57 3.34
4084 4855 2.090719 CCCTCCTGAATCCCTGGTACTA 60.091 54.545 0.00 0.00 35.57 1.82
4098 4869 0.249197 GTACTAACCGGTGATCGCCC 60.249 60.000 19.63 5.43 37.59 6.13
4105 4876 1.878522 CGGTGATCGCCCTTTCTCG 60.879 63.158 19.63 2.12 0.00 4.04
4109 4880 1.884926 GATCGCCCTTTCTCGCAGG 60.885 63.158 0.00 0.00 0.00 4.85
4124 4895 2.365293 TCGCAGGCAGATACACATGTAT 59.635 45.455 0.00 4.18 43.38 2.29
4135 4906 2.076100 ACACATGTATGCACGGTCTTG 58.924 47.619 0.00 0.00 0.00 3.02
4145 4916 0.599204 CACGGTCTTGTACAAGCGGT 60.599 55.000 27.49 25.42 38.28 5.68
4153 4925 1.071814 GTACAAGCGGTGGGGTTCA 59.928 57.895 0.00 0.00 33.12 3.18
4164 4936 0.534203 TGGGGTTCACTGCGTTCTTC 60.534 55.000 0.00 0.00 0.00 2.87
4166 4938 0.868406 GGGTTCACTGCGTTCTTCAG 59.132 55.000 0.00 0.00 37.56 3.02
4170 4942 0.880278 TCACTGCGTTCTTCAGGTGC 60.880 55.000 0.00 0.00 35.94 5.01
4171 4943 1.598130 ACTGCGTTCTTCAGGTGCC 60.598 57.895 0.00 0.00 35.94 5.01
4192 4982 3.465403 CCGCCTCTAGCTGCTGGT 61.465 66.667 13.43 0.00 40.39 4.00
4202 4992 1.008079 GCTGCTGGTTGTCTTGCAC 60.008 57.895 0.00 0.00 0.00 4.57
4203 4993 1.280746 CTGCTGGTTGTCTTGCACG 59.719 57.895 0.00 0.00 0.00 5.34
4209 4999 0.798776 GGTTGTCTTGCACGGAGATG 59.201 55.000 0.00 0.00 0.00 2.90
4210 5000 1.512926 GTTGTCTTGCACGGAGATGT 58.487 50.000 0.00 0.00 0.00 3.06
4211 5001 1.461127 GTTGTCTTGCACGGAGATGTC 59.539 52.381 0.00 0.00 0.00 3.06
4212 5002 0.037326 TGTCTTGCACGGAGATGTCC 60.037 55.000 0.00 0.00 39.88 4.02
4213 5003 0.741221 GTCTTGCACGGAGATGTCCC 60.741 60.000 2.75 0.00 40.20 4.46
4214 5004 1.191489 TCTTGCACGGAGATGTCCCA 61.191 55.000 2.75 0.00 40.20 4.37
4215 5005 0.321564 CTTGCACGGAGATGTCCCAA 60.322 55.000 2.75 1.31 40.20 4.12
4218 5008 2.100631 CACGGAGATGTCCCAACGC 61.101 63.158 2.75 0.00 40.20 4.84
4219 5009 2.885644 CGGAGATGTCCCAACGCG 60.886 66.667 3.53 3.53 40.20 6.01
4220 5010 2.264794 GGAGATGTCCCAACGCGT 59.735 61.111 5.58 5.58 36.76 6.01
4222 5012 1.359459 GGAGATGTCCCAACGCGTTC 61.359 60.000 23.92 11.69 36.76 3.95
4225 5015 0.949105 GATGTCCCAACGCGTTCAGT 60.949 55.000 23.92 5.01 0.00 3.41
4232 5023 2.542824 CCCAACGCGTTCAGTGAAAAAT 60.543 45.455 23.92 0.00 0.00 1.82
4240 5031 5.024555 GCGTTCAGTGAAAAATAGAGATGC 58.975 41.667 7.25 0.00 0.00 3.91
4251 5042 1.403814 TAGAGATGCCCAGAACTCCG 58.596 55.000 0.00 0.00 0.00 4.63
4258 5049 0.537188 GCCCAGAACTCCGAGATTGA 59.463 55.000 1.33 0.00 0.00 2.57
4259 5050 1.139853 GCCCAGAACTCCGAGATTGAT 59.860 52.381 1.33 0.00 0.00 2.57
4260 5051 2.420687 GCCCAGAACTCCGAGATTGATT 60.421 50.000 1.33 0.00 0.00 2.57
4261 5052 3.201290 CCCAGAACTCCGAGATTGATTG 58.799 50.000 1.33 0.00 0.00 2.67
4269 5060 3.521560 TCCGAGATTGATTGTAGTGTGC 58.478 45.455 0.00 0.00 0.00 4.57
4271 5062 3.062639 CCGAGATTGATTGTAGTGTGCAC 59.937 47.826 10.75 10.75 0.00 4.57
4279 5070 1.948104 TGTAGTGTGCACTGGTGAAC 58.052 50.000 19.41 6.51 42.52 3.18
4288 5080 3.357079 CTGGTGAACCACGCAGCC 61.357 66.667 0.00 0.00 42.01 4.85
4303 5095 2.470821 GCAGCCGGTACTGTATTGTAG 58.529 52.381 1.90 0.00 39.96 2.74
4304 5096 2.159142 GCAGCCGGTACTGTATTGTAGT 60.159 50.000 1.90 0.00 39.96 2.73
4306 5098 4.604976 CAGCCGGTACTGTATTGTAGTAC 58.395 47.826 1.90 6.73 46.11 2.73
4358 5158 3.492102 TTAGCCTATGATGGGTTGAGC 57.508 47.619 0.00 0.00 38.86 4.26
4399 5199 5.812642 AGCACAGATGGTCTATTTTTACTCG 59.187 40.000 0.00 0.00 0.00 4.18
4434 5235 6.386927 AGATGTGAGAGAACCACCCATAATAA 59.613 38.462 0.00 0.00 33.80 1.40
4436 5237 6.414732 TGTGAGAGAACCACCCATAATAAAG 58.585 40.000 0.00 0.00 33.80 1.85
4437 5238 6.214615 TGTGAGAGAACCACCCATAATAAAGA 59.785 38.462 0.00 0.00 33.80 2.52
4438 5239 6.763610 GTGAGAGAACCACCCATAATAAAGAG 59.236 42.308 0.00 0.00 0.00 2.85
4440 5241 7.348274 TGAGAGAACCACCCATAATAAAGAGAT 59.652 37.037 0.00 0.00 0.00 2.75
4441 5242 8.798975 AGAGAACCACCCATAATAAAGAGATA 57.201 34.615 0.00 0.00 0.00 1.98
4442 5243 8.652290 AGAGAACCACCCATAATAAAGAGATAC 58.348 37.037 0.00 0.00 0.00 2.24
4443 5244 7.442656 AGAACCACCCATAATAAAGAGATACG 58.557 38.462 0.00 0.00 0.00 3.06
4444 5245 6.742559 ACCACCCATAATAAAGAGATACGT 57.257 37.500 0.00 0.00 0.00 3.57
4445 5246 6.522054 ACCACCCATAATAAAGAGATACGTG 58.478 40.000 0.00 0.00 0.00 4.49
4446 5247 5.408604 CCACCCATAATAAAGAGATACGTGC 59.591 44.000 0.00 0.00 0.00 5.34
4447 5248 5.989168 CACCCATAATAAAGAGATACGTGCA 59.011 40.000 0.00 0.00 0.00 4.57
4448 5249 6.650807 CACCCATAATAAAGAGATACGTGCAT 59.349 38.462 0.00 0.00 0.00 3.96
4449 5250 6.874134 ACCCATAATAAAGAGATACGTGCATC 59.126 38.462 0.00 0.00 0.00 3.91
4450 5251 6.873605 CCCATAATAAAGAGATACGTGCATCA 59.126 38.462 0.00 0.00 0.00 3.07
4451 5252 7.387673 CCCATAATAAAGAGATACGTGCATCAA 59.612 37.037 0.00 0.00 0.00 2.57
4452 5253 8.773645 CCATAATAAAGAGATACGTGCATCAAA 58.226 33.333 0.00 0.00 0.00 2.69
4455 5256 8.437360 AATAAAGAGATACGTGCATCAAATCA 57.563 30.769 0.00 0.00 0.00 2.57
4456 5257 6.741992 AAAGAGATACGTGCATCAAATCAA 57.258 33.333 0.00 0.00 0.00 2.57
4457 5258 6.741992 AAGAGATACGTGCATCAAATCAAA 57.258 33.333 0.00 0.00 0.00 2.69
4458 5259 6.741992 AGAGATACGTGCATCAAATCAAAA 57.258 33.333 0.00 0.00 0.00 2.44
4459 5260 7.144722 AGAGATACGTGCATCAAATCAAAAA 57.855 32.000 0.00 0.00 0.00 1.94
4460 5261 7.765307 AGAGATACGTGCATCAAATCAAAAAT 58.235 30.769 0.00 0.00 0.00 1.82
4477 5278 8.613060 ATCAAAAATAGAGATACGTGCATCAT 57.387 30.769 0.00 0.00 0.00 2.45
4482 5283 3.722147 AGAGATACGTGCATCATGTTCC 58.278 45.455 0.00 0.00 35.12 3.62
4487 5288 5.466728 AGATACGTGCATCATGTTCCATAAC 59.533 40.000 0.00 0.00 35.12 1.89
4493 5300 4.158209 TGCATCATGTTCCATAACCTGTTG 59.842 41.667 0.00 0.00 35.62 3.33
4519 5336 4.559153 GCTGTGTTTATTTGAACATGGCT 58.441 39.130 0.00 0.00 41.18 4.75
4520 5337 4.622740 GCTGTGTTTATTTGAACATGGCTC 59.377 41.667 0.00 0.00 41.18 4.70
4521 5338 5.132897 TGTGTTTATTTGAACATGGCTCC 57.867 39.130 0.00 0.00 41.18 4.70
4531 5348 1.321474 ACATGGCTCCAACAACTGTG 58.679 50.000 0.00 0.00 0.00 3.66
4544 5361 0.104671 AACTGTGCAAACCATGGTGC 59.895 50.000 20.60 19.16 41.29 5.01
4591 6564 4.642885 TGCTATGGTTAACCTTAACATGGC 59.357 41.667 24.78 20.87 43.64 4.40
4595 6568 2.162809 GGTTAACCTTAACATGGCCACG 59.837 50.000 17.83 0.08 43.64 4.94
4716 6691 4.735132 CGGTGCCGGCGAAAGAGA 62.735 66.667 23.90 0.00 35.56 3.10
4867 6852 4.035102 GGAGCCCCACACAGACCC 62.035 72.222 0.00 0.00 0.00 4.46
4868 6853 4.394712 GAGCCCCACACAGACCCG 62.395 72.222 0.00 0.00 0.00 5.28
4919 6904 3.741476 GCGCCAAGTGCTCCCTTG 61.741 66.667 0.00 4.88 41.21 3.61
4920 6905 2.032528 CGCCAAGTGCTCCCTTGA 59.967 61.111 11.36 0.00 43.65 3.02
4921 6906 2.328099 CGCCAAGTGCTCCCTTGAC 61.328 63.158 11.36 1.59 43.65 3.18
4922 6907 2.328099 GCCAAGTGCTCCCTTGACG 61.328 63.158 11.36 0.00 43.65 4.35
4927 6915 1.270907 AGTGCTCCCTTGACGATTCT 58.729 50.000 0.00 0.00 0.00 2.40
4939 6927 2.791927 GATTCTCCCGCGGCAAAC 59.208 61.111 22.85 6.93 0.00 2.93
4940 6928 1.745489 GATTCTCCCGCGGCAAACT 60.745 57.895 22.85 3.07 0.00 2.66
4941 6929 1.706287 GATTCTCCCGCGGCAAACTC 61.706 60.000 22.85 9.60 0.00 3.01
4942 6930 4.735132 TCTCCCGCGGCAAACTCG 62.735 66.667 22.85 3.88 0.00 4.18
4944 6932 3.636313 CTCCCGCGGCAAACTCGTA 62.636 63.158 22.85 0.00 0.00 3.43
4945 6933 2.510691 CCCGCGGCAAACTCGTAT 60.511 61.111 22.85 0.00 0.00 3.06
4946 6934 2.104253 CCCGCGGCAAACTCGTATT 61.104 57.895 22.85 0.00 0.00 1.89
4947 6935 1.347221 CCGCGGCAAACTCGTATTC 59.653 57.895 14.67 0.00 0.00 1.75
4948 6936 1.082117 CCGCGGCAAACTCGTATTCT 61.082 55.000 14.67 0.00 0.00 2.40
4949 6937 0.719465 CGCGGCAAACTCGTATTCTT 59.281 50.000 0.00 0.00 0.00 2.52
4950 6938 1.266891 CGCGGCAAACTCGTATTCTTC 60.267 52.381 0.00 0.00 0.00 2.87
4951 6939 2.000447 GCGGCAAACTCGTATTCTTCT 59.000 47.619 0.00 0.00 0.00 2.85
4952 6940 2.029365 GCGGCAAACTCGTATTCTTCTC 59.971 50.000 0.00 0.00 0.00 2.87
4953 6941 2.279136 CGGCAAACTCGTATTCTTCTCG 59.721 50.000 0.00 0.00 0.00 4.04
4954 6942 2.603560 GGCAAACTCGTATTCTTCTCGG 59.396 50.000 0.00 0.00 0.00 4.63
4955 6943 3.251571 GCAAACTCGTATTCTTCTCGGT 58.748 45.455 0.00 0.00 0.00 4.69
4956 6944 3.060895 GCAAACTCGTATTCTTCTCGGTG 59.939 47.826 0.00 0.00 0.00 4.94
4957 6945 2.563471 ACTCGTATTCTTCTCGGTGC 57.437 50.000 0.00 0.00 0.00 5.01
4958 6946 1.134560 ACTCGTATTCTTCTCGGTGCC 59.865 52.381 0.00 0.00 0.00 5.01
4959 6947 0.099968 TCGTATTCTTCTCGGTGCCG 59.900 55.000 3.94 3.94 41.35 5.69
4960 6948 0.179145 CGTATTCTTCTCGGTGCCGT 60.179 55.000 10.60 0.00 40.74 5.68
4961 6949 1.278238 GTATTCTTCTCGGTGCCGTG 58.722 55.000 10.60 8.38 40.74 4.94
4962 6950 0.459585 TATTCTTCTCGGTGCCGTGC 60.460 55.000 10.60 0.00 40.74 5.34
4963 6951 3.756288 TATTCTTCTCGGTGCCGTGCC 62.756 57.143 10.60 0.00 40.74 5.01
4975 6963 4.088762 CGTGCCGTGTGCCATCAC 62.089 66.667 0.00 0.00 43.40 3.06
4976 6964 3.737172 GTGCCGTGTGCCATCACC 61.737 66.667 0.00 0.00 42.46 4.02
4977 6965 4.262089 TGCCGTGTGCCATCACCA 62.262 61.111 0.00 0.00 42.46 4.17
4978 6966 3.737172 GCCGTGTGCCATCACCAC 61.737 66.667 0.00 0.00 42.46 4.16
4979 6967 3.055719 CCGTGTGCCATCACCACC 61.056 66.667 0.00 0.00 42.46 4.61
4980 6968 3.422303 CGTGTGCCATCACCACCG 61.422 66.667 0.00 0.00 42.46 4.94
4981 6969 3.737172 GTGTGCCATCACCACCGC 61.737 66.667 0.00 0.00 42.46 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.537188 AAACGTCTCATCCTCGGCAT 59.463 50.000 0.00 0.00 0.00 4.40
158 160 3.827898 CGCCCACTCGTCTCTCCC 61.828 72.222 0.00 0.00 0.00 4.30
183 185 4.021925 GGCGCTCCCTCCACACTT 62.022 66.667 7.64 0.00 0.00 3.16
197 199 0.503117 GCGCTCGTTATAAGAAGGCG 59.497 55.000 0.00 13.85 43.21 5.52
298 304 3.431725 CAGCGCGGGGAAAGGTTC 61.432 66.667 8.83 0.00 0.00 3.62
312 318 1.372128 CTGTTTTTGGCGCTCCAGC 60.372 57.895 7.64 0.00 44.53 4.85
313 319 1.286880 CCTGTTTTTGGCGCTCCAG 59.713 57.895 7.64 4.57 44.53 3.86
314 320 2.199652 CCCTGTTTTTGGCGCTCCA 61.200 57.895 7.64 0.00 41.55 3.86
315 321 2.650778 CCCTGTTTTTGGCGCTCC 59.349 61.111 7.64 0.00 0.00 4.70
316 322 2.049156 GCCCTGTTTTTGGCGCTC 60.049 61.111 7.64 0.00 38.00 5.03
320 326 2.050442 CGTCGCCCTGTTTTTGGC 60.050 61.111 0.00 0.00 44.41 4.52
321 327 2.642700 CCGTCGCCCTGTTTTTGG 59.357 61.111 0.00 0.00 0.00 3.28
322 328 2.050442 GCCGTCGCCCTGTTTTTG 60.050 61.111 0.00 0.00 0.00 2.44
323 329 1.901464 ATGCCGTCGCCCTGTTTTT 60.901 52.632 0.00 0.00 0.00 1.94
324 330 2.282180 ATGCCGTCGCCCTGTTTT 60.282 55.556 0.00 0.00 0.00 2.43
325 331 3.055719 CATGCCGTCGCCCTGTTT 61.056 61.111 0.00 0.00 0.00 2.83
337 343 3.896133 CATGCCAGCGTCCATGCC 61.896 66.667 0.00 0.00 33.27 4.40
338 344 2.126417 GATCATGCCAGCGTCCATGC 62.126 60.000 8.15 0.00 38.89 4.06
339 345 0.534427 AGATCATGCCAGCGTCCATG 60.534 55.000 0.00 7.05 40.05 3.66
340 346 1.051008 TAGATCATGCCAGCGTCCAT 58.949 50.000 0.00 0.00 0.00 3.41
341 347 0.829990 TTAGATCATGCCAGCGTCCA 59.170 50.000 0.00 0.00 0.00 4.02
342 348 1.953559 TTTAGATCATGCCAGCGTCC 58.046 50.000 0.00 0.00 0.00 4.79
343 349 2.285834 CGTTTTAGATCATGCCAGCGTC 60.286 50.000 0.00 0.00 0.00 5.19
344 350 1.665679 CGTTTTAGATCATGCCAGCGT 59.334 47.619 0.00 0.00 0.00 5.07
345 351 1.595489 GCGTTTTAGATCATGCCAGCG 60.595 52.381 0.00 0.00 0.00 5.18
346 352 1.595489 CGCGTTTTAGATCATGCCAGC 60.595 52.381 0.00 0.00 0.00 4.85
347 353 1.595489 GCGCGTTTTAGATCATGCCAG 60.595 52.381 8.43 0.00 0.00 4.85
348 354 0.376852 GCGCGTTTTAGATCATGCCA 59.623 50.000 8.43 0.00 0.00 4.92
349 355 0.654472 CGCGCGTTTTAGATCATGCC 60.654 55.000 24.19 0.00 0.00 4.40
350 356 1.255635 GCGCGCGTTTTAGATCATGC 61.256 55.000 32.35 5.38 0.00 4.06
351 357 0.982036 CGCGCGCGTTTTAGATCATG 60.982 55.000 42.49 12.54 34.35 3.07
352 358 1.272715 CGCGCGCGTTTTAGATCAT 59.727 52.632 42.49 0.00 34.35 2.45
353 359 2.692696 CGCGCGCGTTTTAGATCA 59.307 55.556 42.49 0.00 34.35 2.92
354 360 2.054242 CCGCGCGCGTTTTAGATC 60.054 61.111 45.51 10.84 37.81 2.75
355 361 2.795389 GACCGCGCGCGTTTTAGAT 61.795 57.895 45.51 24.59 37.81 1.98
356 362 3.472298 GACCGCGCGCGTTTTAGA 61.472 61.111 45.51 0.00 37.81 2.10
357 363 1.744811 TATGACCGCGCGCGTTTTAG 61.745 55.000 45.51 33.61 37.81 1.85
358 364 1.349982 TTATGACCGCGCGCGTTTTA 61.350 50.000 45.51 31.04 37.81 1.52
359 365 2.172719 TTTATGACCGCGCGCGTTTT 62.173 50.000 45.51 32.03 37.81 2.43
360 366 2.172719 TTTTATGACCGCGCGCGTTT 62.173 50.000 45.51 34.58 37.81 3.60
361 367 1.973137 ATTTTATGACCGCGCGCGTT 61.973 50.000 45.51 38.02 37.81 4.84
362 368 2.457778 ATTTTATGACCGCGCGCGT 61.458 52.632 45.51 34.70 37.81 6.01
363 369 1.998257 CATTTTATGACCGCGCGCG 60.998 57.895 43.73 43.73 39.44 6.86
364 370 1.654137 CCATTTTATGACCGCGCGC 60.654 57.895 27.36 23.91 0.00 6.86
365 371 1.010125 CCCATTTTATGACCGCGCG 60.010 57.895 25.67 25.67 0.00 6.86
366 372 0.028902 GACCCATTTTATGACCGCGC 59.971 55.000 0.00 0.00 0.00 6.86
367 373 1.330521 CTGACCCATTTTATGACCGCG 59.669 52.381 0.00 0.00 0.00 6.46
368 374 1.065551 GCTGACCCATTTTATGACCGC 59.934 52.381 0.00 0.00 0.00 5.68
369 375 1.676006 GGCTGACCCATTTTATGACCG 59.324 52.381 0.00 0.00 0.00 4.79
397 403 3.659092 TTTTGGCTCGGCAGTGCG 61.659 61.111 9.45 4.79 37.71 5.34
398 404 1.234615 TAGTTTTGGCTCGGCAGTGC 61.235 55.000 6.55 6.55 36.24 4.40
399 405 1.234821 TTAGTTTTGGCTCGGCAGTG 58.765 50.000 0.00 0.00 0.00 3.66
400 406 1.975660 TTTAGTTTTGGCTCGGCAGT 58.024 45.000 0.00 0.00 0.00 4.40
401 407 2.552315 TCTTTTAGTTTTGGCTCGGCAG 59.448 45.455 0.00 0.00 0.00 4.85
402 408 2.552315 CTCTTTTAGTTTTGGCTCGGCA 59.448 45.455 0.00 0.00 0.00 5.69
403 409 2.095212 CCTCTTTTAGTTTTGGCTCGGC 60.095 50.000 0.00 0.00 0.00 5.54
404 410 3.188667 GTCCTCTTTTAGTTTTGGCTCGG 59.811 47.826 0.00 0.00 0.00 4.63
405 411 3.120649 CGTCCTCTTTTAGTTTTGGCTCG 60.121 47.826 0.00 0.00 0.00 5.03
406 412 3.188667 CCGTCCTCTTTTAGTTTTGGCTC 59.811 47.826 0.00 0.00 0.00 4.70
407 413 3.146847 CCGTCCTCTTTTAGTTTTGGCT 58.853 45.455 0.00 0.00 0.00 4.75
408 414 3.058432 GTCCGTCCTCTTTTAGTTTTGGC 60.058 47.826 0.00 0.00 0.00 4.52
409 415 3.185797 CGTCCGTCCTCTTTTAGTTTTGG 59.814 47.826 0.00 0.00 0.00 3.28
410 416 3.185797 CCGTCCGTCCTCTTTTAGTTTTG 59.814 47.826 0.00 0.00 0.00 2.44
411 417 3.396560 CCGTCCGTCCTCTTTTAGTTTT 58.603 45.455 0.00 0.00 0.00 2.43
412 418 2.869237 GCCGTCCGTCCTCTTTTAGTTT 60.869 50.000 0.00 0.00 0.00 2.66
413 419 1.337541 GCCGTCCGTCCTCTTTTAGTT 60.338 52.381 0.00 0.00 0.00 2.24
414 420 0.245813 GCCGTCCGTCCTCTTTTAGT 59.754 55.000 0.00 0.00 0.00 2.24
415 421 0.801067 CGCCGTCCGTCCTCTTTTAG 60.801 60.000 0.00 0.00 0.00 1.85
416 422 1.213537 CGCCGTCCGTCCTCTTTTA 59.786 57.895 0.00 0.00 0.00 1.52
417 423 2.048503 CGCCGTCCGTCCTCTTTT 60.049 61.111 0.00 0.00 0.00 2.27
418 424 4.065281 CCGCCGTCCGTCCTCTTT 62.065 66.667 0.00 0.00 34.38 2.52
441 447 3.666253 GTCCGTTTGGGTTGGCCG 61.666 66.667 0.00 0.00 37.00 6.13
442 448 1.677637 TTTGTCCGTTTGGGTTGGCC 61.678 55.000 0.00 0.00 37.00 5.36
443 449 0.175989 TTTTGTCCGTTTGGGTTGGC 59.824 50.000 0.00 0.00 37.00 4.52
444 450 2.674796 TTTTTGTCCGTTTGGGTTGG 57.325 45.000 0.00 0.00 37.00 3.77
460 466 1.270068 CGGCGTTTTTGTCCGTTTTT 58.730 45.000 0.00 0.00 38.47 1.94
461 467 2.946703 CGGCGTTTTTGTCCGTTTT 58.053 47.368 0.00 0.00 38.47 2.43
462 468 4.694102 CGGCGTTTTTGTCCGTTT 57.306 50.000 0.00 0.00 38.47 3.60
466 472 2.128367 AATGAACGGCGTTTTTGTCC 57.872 45.000 27.48 13.13 0.00 4.02
467 473 3.109619 TCAAATGAACGGCGTTTTTGTC 58.890 40.909 32.09 20.64 33.51 3.18
468 474 3.112580 CTCAAATGAACGGCGTTTTTGT 58.887 40.909 32.09 17.16 33.51 2.83
469 475 3.112580 ACTCAAATGAACGGCGTTTTTG 58.887 40.909 29.94 29.94 33.51 2.44
470 476 3.368495 GACTCAAATGAACGGCGTTTTT 58.632 40.909 27.48 20.30 33.51 1.94
471 477 2.601266 CGACTCAAATGAACGGCGTTTT 60.601 45.455 27.48 15.28 33.51 2.43
472 478 1.070175 CGACTCAAATGAACGGCGTTT 60.070 47.619 27.48 9.18 36.15 3.60
473 479 0.511221 CGACTCAAATGAACGGCGTT 59.489 50.000 27.15 27.15 0.00 4.84
474 480 1.289109 CCGACTCAAATGAACGGCGT 61.289 55.000 6.77 6.77 37.30 5.68
475 481 1.419922 CCGACTCAAATGAACGGCG 59.580 57.895 4.80 4.80 37.30 6.46
477 483 1.644786 GGGCCGACTCAAATGAACGG 61.645 60.000 18.11 18.11 42.56 4.44
478 484 1.794222 GGGCCGACTCAAATGAACG 59.206 57.895 0.00 0.00 0.00 3.95
479 485 0.953960 ACGGGCCGACTCAAATGAAC 60.954 55.000 35.78 0.00 0.00 3.18
480 486 0.250553 AACGGGCCGACTCAAATGAA 60.251 50.000 35.78 0.00 0.00 2.57
481 487 0.953471 CAACGGGCCGACTCAAATGA 60.953 55.000 35.78 0.00 0.00 2.57
482 488 1.501741 CAACGGGCCGACTCAAATG 59.498 57.895 35.78 14.60 0.00 2.32
483 489 1.674322 CCAACGGGCCGACTCAAAT 60.674 57.895 35.78 4.66 0.00 2.32
484 490 2.281208 CCAACGGGCCGACTCAAA 60.281 61.111 35.78 0.00 0.00 2.69
485 491 3.234630 CTCCAACGGGCCGACTCAA 62.235 63.158 35.78 12.55 0.00 3.02
486 492 3.691342 CTCCAACGGGCCGACTCA 61.691 66.667 35.78 12.53 0.00 3.41
487 493 3.236003 AACTCCAACGGGCCGACTC 62.236 63.158 35.78 0.00 0.00 3.36
488 494 3.239253 AACTCCAACGGGCCGACT 61.239 61.111 35.78 16.74 0.00 4.18
489 495 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
492 498 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
493 499 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
494 500 2.403252 ATAAGAGCAACTCCAACGGG 57.597 50.000 0.00 0.00 0.00 5.28
495 501 7.441157 TCAATATAATAAGAGCAACTCCAACGG 59.559 37.037 0.00 0.00 0.00 4.44
496 502 8.365399 TCAATATAATAAGAGCAACTCCAACG 57.635 34.615 0.00 0.00 0.00 4.10
514 520 9.439461 TCTCCTTCTCCTTCTTCAATCAATATA 57.561 33.333 0.00 0.00 0.00 0.86
515 521 8.329346 TCTCCTTCTCCTTCTTCAATCAATAT 57.671 34.615 0.00 0.00 0.00 1.28
516 522 7.739995 TCTCCTTCTCCTTCTTCAATCAATA 57.260 36.000 0.00 0.00 0.00 1.90
517 523 6.633325 TCTCCTTCTCCTTCTTCAATCAAT 57.367 37.500 0.00 0.00 0.00 2.57
518 524 6.270927 TCTTCTCCTTCTCCTTCTTCAATCAA 59.729 38.462 0.00 0.00 0.00 2.57
519 525 5.782331 TCTTCTCCTTCTCCTTCTTCAATCA 59.218 40.000 0.00 0.00 0.00 2.57
520 526 6.293004 TCTTCTCCTTCTCCTTCTTCAATC 57.707 41.667 0.00 0.00 0.00 2.67
521 527 6.500049 TCTTCTTCTCCTTCTCCTTCTTCAAT 59.500 38.462 0.00 0.00 0.00 2.57
522 528 5.841237 TCTTCTTCTCCTTCTCCTTCTTCAA 59.159 40.000 0.00 0.00 0.00 2.69
523 529 5.398236 TCTTCTTCTCCTTCTCCTTCTTCA 58.602 41.667 0.00 0.00 0.00 3.02
524 530 5.714806 TCTCTTCTTCTCCTTCTCCTTCTTC 59.285 44.000 0.00 0.00 0.00 2.87
525 531 5.650283 TCTCTTCTTCTCCTTCTCCTTCTT 58.350 41.667 0.00 0.00 0.00 2.52
526 532 5.269554 TCTCTTCTTCTCCTTCTCCTTCT 57.730 43.478 0.00 0.00 0.00 2.85
527 533 5.993748 TTCTCTTCTTCTCCTTCTCCTTC 57.006 43.478 0.00 0.00 0.00 3.46
528 534 6.755542 TTTTCTCTTCTTCTCCTTCTCCTT 57.244 37.500 0.00 0.00 0.00 3.36
529 535 6.755542 TTTTTCTCTTCTTCTCCTTCTCCT 57.244 37.500 0.00 0.00 0.00 3.69
549 555 5.471116 GGTATCTCGGGTAACAAGTGTTTTT 59.529 40.000 1.35 0.00 39.31 1.94
550 556 4.999311 GGTATCTCGGGTAACAAGTGTTTT 59.001 41.667 1.35 0.00 39.31 2.43
551 557 4.040706 TGGTATCTCGGGTAACAAGTGTTT 59.959 41.667 1.35 0.00 39.31 2.83
552 558 3.579586 TGGTATCTCGGGTAACAAGTGTT 59.420 43.478 1.75 1.75 41.73 3.32
553 559 3.167485 TGGTATCTCGGGTAACAAGTGT 58.833 45.455 0.00 0.00 39.74 3.55
554 560 3.446161 TCTGGTATCTCGGGTAACAAGTG 59.554 47.826 0.00 0.00 39.74 3.16
555 561 3.705051 TCTGGTATCTCGGGTAACAAGT 58.295 45.455 0.00 0.00 39.74 3.16
556 562 4.939052 ATCTGGTATCTCGGGTAACAAG 57.061 45.455 0.00 0.00 39.74 3.16
557 563 5.687166 AAATCTGGTATCTCGGGTAACAA 57.313 39.130 0.00 0.00 39.74 2.83
558 564 5.687166 AAAATCTGGTATCTCGGGTAACA 57.313 39.130 0.00 0.00 39.74 2.41
559 565 6.036844 GTCAAAAATCTGGTATCTCGGGTAAC 59.963 42.308 0.00 0.00 0.00 2.50
570 576 3.773418 TCACCGGTCAAAAATCTGGTA 57.227 42.857 2.59 0.00 40.84 3.25
648 654 4.935495 ACACACACAGCAGCCGGG 62.935 66.667 2.18 0.00 0.00 5.73
649 655 2.896801 GAACACACACAGCAGCCGG 61.897 63.158 0.00 0.00 0.00 6.13
650 656 1.713937 TTGAACACACACAGCAGCCG 61.714 55.000 0.00 0.00 0.00 5.52
651 657 0.029834 CTTGAACACACACAGCAGCC 59.970 55.000 0.00 0.00 0.00 4.85
652 658 0.734889 ACTTGAACACACACAGCAGC 59.265 50.000 0.00 0.00 0.00 5.25
653 659 1.331756 GGACTTGAACACACACAGCAG 59.668 52.381 0.00 0.00 0.00 4.24
654 660 1.378531 GGACTTGAACACACACAGCA 58.621 50.000 0.00 0.00 0.00 4.41
655 661 0.663153 GGGACTTGAACACACACAGC 59.337 55.000 0.00 0.00 0.00 4.40
656 662 1.308998 GGGGACTTGAACACACACAG 58.691 55.000 0.00 0.00 0.00 3.66
659 665 0.179067 GACGGGGACTTGAACACACA 60.179 55.000 0.00 0.00 0.00 3.72
660 666 0.106149 AGACGGGGACTTGAACACAC 59.894 55.000 0.00 0.00 0.00 3.82
663 669 1.752198 CCAGACGGGGACTTGAACA 59.248 57.895 0.00 0.00 0.00 3.18
664 670 1.671379 GCCAGACGGGGACTTGAAC 60.671 63.158 0.00 0.00 37.04 3.18
665 671 1.827399 GAGCCAGACGGGGACTTGAA 61.827 60.000 0.00 0.00 37.04 2.69
666 672 2.203788 AGCCAGACGGGGACTTGA 60.204 61.111 0.00 0.00 37.04 3.02
668 674 3.003763 GGAGCCAGACGGGGACTT 61.004 66.667 0.00 0.00 37.04 3.01
681 687 2.522638 CGACGTAAATGGCCGGAGC 61.523 63.158 5.05 0.00 38.76 4.70
685 691 2.384309 TGTGCGACGTAAATGGCCG 61.384 57.895 0.00 0.00 0.00 6.13
831 860 4.548513 CGAGGAGGAGGGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
833 862 3.687828 AAGCGAGGAGGAGGGGGAG 62.688 68.421 0.00 0.00 0.00 4.30
834 863 3.680920 GAAGCGAGGAGGAGGGGGA 62.681 68.421 0.00 0.00 0.00 4.81
835 864 3.157949 GAAGCGAGGAGGAGGGGG 61.158 72.222 0.00 0.00 0.00 5.40
836 865 2.042435 AGAAGCGAGGAGGAGGGG 60.042 66.667 0.00 0.00 0.00 4.79
837 866 2.131067 GGAGAAGCGAGGAGGAGGG 61.131 68.421 0.00 0.00 0.00 4.30
838 867 0.758685 ATGGAGAAGCGAGGAGGAGG 60.759 60.000 0.00 0.00 0.00 4.30
839 868 0.673437 GATGGAGAAGCGAGGAGGAG 59.327 60.000 0.00 0.00 0.00 3.69
840 869 0.757188 GGATGGAGAAGCGAGGAGGA 60.757 60.000 0.00 0.00 0.00 3.71
841 870 0.758685 AGGATGGAGAAGCGAGGAGG 60.759 60.000 0.00 0.00 0.00 4.30
842 871 1.068434 GAAGGATGGAGAAGCGAGGAG 59.932 57.143 0.00 0.00 0.00 3.69
843 872 1.115467 GAAGGATGGAGAAGCGAGGA 58.885 55.000 0.00 0.00 0.00 3.71
844 873 1.068434 GAGAAGGATGGAGAAGCGAGG 59.932 57.143 0.00 0.00 0.00 4.63
845 874 1.068434 GGAGAAGGATGGAGAAGCGAG 59.932 57.143 0.00 0.00 0.00 5.03
932 980 2.401766 GGAATGGGTGACGCTGCTG 61.402 63.158 0.31 0.00 0.00 4.41
933 981 2.045926 GGAATGGGTGACGCTGCT 60.046 61.111 0.31 0.00 0.00 4.24
934 982 3.134127 GGGAATGGGTGACGCTGC 61.134 66.667 0.31 0.00 0.00 5.25
939 987 2.683475 CCCCTGGGAATGGGTGAC 59.317 66.667 16.20 0.00 43.09 3.67
942 990 3.350163 CTGCCCCTGGGAATGGGT 61.350 66.667 16.20 0.00 44.20 4.51
943 991 4.847367 GCTGCCCCTGGGAATGGG 62.847 72.222 16.20 0.00 45.22 4.00
1463 1552 2.224281 ACAAGAGATTGACAAGCGTGGA 60.224 45.455 4.26 0.00 0.00 4.02
1474 1563 4.825546 AGTGTTGCAGAACAAGAGATTG 57.174 40.909 0.00 0.00 43.77 2.67
1492 1581 2.421424 GAGCCCTGCAATGTAAGAAGTG 59.579 50.000 0.00 0.00 0.00 3.16
1494 1583 2.715046 TGAGCCCTGCAATGTAAGAAG 58.285 47.619 0.00 0.00 0.00 2.85
1495 1584 2.877097 TGAGCCCTGCAATGTAAGAA 57.123 45.000 0.00 0.00 0.00 2.52
1496 1585 2.507058 AGATGAGCCCTGCAATGTAAGA 59.493 45.455 0.00 0.00 0.00 2.10
1497 1586 2.617308 CAGATGAGCCCTGCAATGTAAG 59.383 50.000 0.00 0.00 0.00 2.34
1498 1587 2.025981 ACAGATGAGCCCTGCAATGTAA 60.026 45.455 0.00 0.00 35.14 2.41
1499 1588 1.561076 ACAGATGAGCCCTGCAATGTA 59.439 47.619 0.00 0.00 35.14 2.29
1601 1699 7.754851 AGCATCACTATGATTTTGATATGCA 57.245 32.000 0.00 0.00 34.28 3.96
1623 1728 4.054671 CCTCGGTCATTCAGATCTTTAGC 58.945 47.826 0.00 0.00 0.00 3.09
1646 2102 6.939730 TCCTAGAATCATTTGCGGCAATAATA 59.060 34.615 17.19 1.24 0.00 0.98
1712 2169 0.714180 TGACAGGGGGAGGTTAGCTA 59.286 55.000 0.00 0.00 0.00 3.32
1750 2435 0.179163 GCAGGCGCTAACCAATCAAC 60.179 55.000 7.64 0.00 34.30 3.18
1769 2454 4.398988 TCAGGTTTACATGCTGCTAAATGG 59.601 41.667 0.00 0.00 0.00 3.16
1785 2470 6.543831 GGCATGATGATAAGTACTTCAGGTTT 59.456 38.462 12.39 0.00 0.00 3.27
1786 2471 6.058183 GGCATGATGATAAGTACTTCAGGTT 58.942 40.000 12.39 0.00 0.00 3.50
2018 2714 6.845758 ACGATCTTATATTATGGGACGGAA 57.154 37.500 0.00 0.00 0.00 4.30
2044 2746 7.789202 TCCTATCTCTAATTATCTGCTTGCT 57.211 36.000 0.00 0.00 0.00 3.91
2118 2821 4.371624 ACAATTCTCTTGTGTGGGATGA 57.628 40.909 0.00 0.00 0.00 2.92
2120 2823 9.479549 AATATAAACAATTCTCTTGTGTGGGAT 57.520 29.630 0.00 0.00 32.22 3.85
2177 2888 1.134075 CACACTGAAGCAGCGCATC 59.866 57.895 11.47 2.56 34.37 3.91
2181 2892 1.502231 AACTACACACTGAAGCAGCG 58.498 50.000 0.00 0.00 34.37 5.18
2239 2950 5.144100 TGGAGCCTGGAAGAATAACAAAAA 58.856 37.500 0.00 0.00 34.07 1.94
2417 3133 0.508641 CGTGGAAACAGAGACTTGCG 59.491 55.000 0.00 0.00 44.46 4.85
2439 3155 5.880901 ACAATACAAGTCCAAAGGAGTGAT 58.119 37.500 0.00 0.00 35.27 3.06
2463 3181 5.467035 TCAAGGCCCTTGAATAAAACAAG 57.533 39.130 23.73 0.00 45.84 3.16
2522 3240 6.281405 ACTAATAAGAAATGAGGTAGCACCG 58.719 40.000 0.00 0.00 44.90 4.94
2545 3263 3.495753 CGGAAGTACTTGGTGTGGTTTAC 59.504 47.826 14.14 0.00 0.00 2.01
2571 3289 2.099141 ACGACAATCCAGACCACATG 57.901 50.000 0.00 0.00 0.00 3.21
2746 3482 6.989169 TCCCACCATTTTTAATCACAAACTTG 59.011 34.615 0.00 0.00 0.00 3.16
2806 3542 3.005684 TGTTCTTGTTGCATGTTCCATCC 59.994 43.478 0.00 0.00 0.00 3.51
2849 3585 1.745653 GACAAATTGCTAGGAGGCACC 59.254 52.381 0.00 0.00 42.27 5.01
2851 3587 2.715046 CAGACAAATTGCTAGGAGGCA 58.285 47.619 0.00 0.00 40.74 4.75
2852 3588 1.403323 GCAGACAAATTGCTAGGAGGC 59.597 52.381 0.00 0.00 38.51 4.70
2860 3596 5.979517 AGTTTTCTACAAGCAGACAAATTGC 59.020 36.000 0.00 0.00 41.83 3.56
2906 3654 9.304731 ACAAATTGCATAAATATGACACATCAC 57.695 29.630 4.63 0.00 37.79 3.06
2921 3669 5.050227 GCAAAACAAGCAGACAAATTGCATA 60.050 36.000 0.00 0.00 43.92 3.14
3046 3795 0.250295 TAGCGCTGCCACATATTCCC 60.250 55.000 22.90 0.00 0.00 3.97
3067 3816 3.406764 CTGGGAGTATAGCTGAAATGCC 58.593 50.000 0.00 0.00 0.00 4.40
3200 3950 3.540314 AGGACTGCATGATCAAGAGAC 57.460 47.619 0.00 0.00 0.00 3.36
3243 3993 4.023291 ACAATCCAATAATCCTTGCCGTT 58.977 39.130 0.00 0.00 0.00 4.44
3244 3994 3.381272 CACAATCCAATAATCCTTGCCGT 59.619 43.478 0.00 0.00 0.00 5.68
3245 3995 3.631686 TCACAATCCAATAATCCTTGCCG 59.368 43.478 0.00 0.00 0.00 5.69
3332 4082 0.530744 TGCCACAGATACCTGACGAC 59.469 55.000 0.00 0.00 43.02 4.34
3433 4183 2.619074 CCTTCAGGGCAGGAGGTAAAAG 60.619 54.545 0.00 0.00 32.41 2.27
3509 4259 2.871022 GACTGCATTATCCAGCTCACAG 59.129 50.000 0.00 0.00 33.65 3.66
3530 4280 1.852895 GAACGGTTATCGCTACAGCAG 59.147 52.381 1.61 0.00 43.89 4.24
3536 4286 2.669434 GCAACAAGAACGGTTATCGCTA 59.331 45.455 0.00 0.00 43.89 4.26
3584 4334 3.787001 AAGCAGCGTCCCCTAGCC 61.787 66.667 0.00 0.00 0.00 3.93
3596 4346 4.335315 TCACTTGTGTTTACCTTCAAGCAG 59.665 41.667 0.00 0.00 40.29 4.24
3617 4367 8.125978 ACCTCAAAGAAGAATGCATAAAATCA 57.874 30.769 0.00 0.00 0.00 2.57
3619 4369 9.428097 GAAACCTCAAAGAAGAATGCATAAAAT 57.572 29.630 0.00 0.00 0.00 1.82
3634 4385 4.734854 CACAAACATGACGAAACCTCAAAG 59.265 41.667 0.00 0.00 0.00 2.77
3659 4410 1.902508 TCAGGCAGGTCAGTTCCTAAG 59.097 52.381 0.00 0.00 35.87 2.18
3684 4436 8.584157 AGCATTTGTCAAACTTAACCATATCAA 58.416 29.630 0.00 0.00 0.00 2.57
3698 4450 6.899393 AAGTATTCCAGAGCATTTGTCAAA 57.101 33.333 0.00 0.00 0.00 2.69
3711 4463 5.379706 AGATGGAGGGAAAAGTATTCCAG 57.620 43.478 9.27 0.00 40.93 3.86
3713 4465 8.768501 AATAAAGATGGAGGGAAAAGTATTCC 57.231 34.615 0.00 0.00 37.86 3.01
3716 4468 9.997172 AGAAAATAAAGATGGAGGGAAAAGTAT 57.003 29.630 0.00 0.00 0.00 2.12
3717 4469 9.822727 AAGAAAATAAAGATGGAGGGAAAAGTA 57.177 29.630 0.00 0.00 0.00 2.24
3721 4473 8.899887 ATGAAGAAAATAAAGATGGAGGGAAA 57.100 30.769 0.00 0.00 0.00 3.13
3726 4478 9.578576 TGGGATATGAAGAAAATAAAGATGGAG 57.421 33.333 0.00 0.00 0.00 3.86
3752 4506 7.709613 ACAGTCTCTACGTACAAAAACTGAAAT 59.290 33.333 18.27 2.48 37.06 2.17
3771 4525 4.762956 ACTTAACCTACGACACAGTCTC 57.237 45.455 0.00 0.00 0.00 3.36
3781 4535 6.071952 TGGTAACCTGACTAACTTAACCTACG 60.072 42.308 0.00 0.00 0.00 3.51
3782 4536 7.232118 TGGTAACCTGACTAACTTAACCTAC 57.768 40.000 0.00 0.00 0.00 3.18
3786 4540 5.410746 GCCTTGGTAACCTGACTAACTTAAC 59.589 44.000 0.00 0.00 0.00 2.01
3803 4560 6.350949 GGTTTCATGTATGTTTATGCCTTGGT 60.351 38.462 0.00 0.00 0.00 3.67
3808 4565 4.336993 TCCGGTTTCATGTATGTTTATGCC 59.663 41.667 0.00 0.00 0.00 4.40
3820 4579 4.142403 ACACAGCATTTATCCGGTTTCATG 60.142 41.667 0.00 1.62 0.00 3.07
3822 4581 3.417101 ACACAGCATTTATCCGGTTTCA 58.583 40.909 0.00 0.00 0.00 2.69
3836 4595 3.099141 TCAGTCATCAGGATACACAGCA 58.901 45.455 0.00 0.00 41.41 4.41
3845 4604 4.225717 TCACCAAATGATCAGTCATCAGGA 59.774 41.667 0.09 0.00 45.11 3.86
3885 4644 6.042093 CCTCTATACTGGAGAAGTTGCCATTA 59.958 42.308 0.00 0.00 40.56 1.90
3903 4662 7.473511 GCTTGCTTCCTCTTAATTCCCTCTATA 60.474 40.741 0.00 0.00 0.00 1.31
3915 4674 3.327757 TGGAGAAAGCTTGCTTCCTCTTA 59.672 43.478 18.35 7.88 0.00 2.10
3966 4725 9.638239 TTTTTGTATGTCTATTGATCCAAAAGC 57.362 29.630 0.00 0.00 33.62 3.51
3993 4752 5.215845 TGATCTTACCTGTGATCCATACCA 58.784 41.667 0.00 0.00 38.53 3.25
3994 4753 5.808366 TGATCTTACCTGTGATCCATACC 57.192 43.478 0.00 0.00 38.53 2.73
3995 4754 5.641209 GCATGATCTTACCTGTGATCCATAC 59.359 44.000 0.00 0.00 38.53 2.39
3998 4757 3.181451 GGCATGATCTTACCTGTGATCCA 60.181 47.826 0.00 0.00 38.53 3.41
4030 4789 2.124612 TGATGGCAGCACCGGATG 60.125 61.111 9.46 4.91 43.94 3.51
4031 4790 2.191375 CTGATGGCAGCACCGGAT 59.809 61.111 9.46 0.00 43.94 4.18
4033 4792 3.129502 CACTGATGGCAGCACCGG 61.130 66.667 0.00 0.00 46.26 5.28
4035 4794 3.807538 CGCACTGATGGCAGCACC 61.808 66.667 0.00 0.00 46.26 5.01
4036 4795 2.743538 TCGCACTGATGGCAGCAC 60.744 61.111 0.00 0.00 46.26 4.40
4038 4797 3.503363 GGTCGCACTGATGGCAGC 61.503 66.667 0.00 0.00 46.26 5.25
4042 4801 1.448540 GGAGTGGTCGCACTGATGG 60.449 63.158 0.04 0.00 35.23 3.51
4046 4805 2.262915 GGAGGAGTGGTCGCACTG 59.737 66.667 0.04 0.00 35.23 3.66
4048 4807 4.083862 GGGGAGGAGTGGTCGCAC 62.084 72.222 0.00 0.00 0.00 5.34
4054 4825 0.327000 ATTCAGGAGGGGAGGAGTGG 60.327 60.000 0.00 0.00 0.00 4.00
4056 4827 0.030603 GGATTCAGGAGGGGAGGAGT 60.031 60.000 0.00 0.00 0.00 3.85
4073 4844 0.409092 TCACCGGTTAGTACCAGGGA 59.591 55.000 2.97 0.00 45.31 4.20
4078 4849 0.249197 GGCGATCACCGGTTAGTACC 60.249 60.000 2.97 0.00 41.33 3.34
4079 4850 0.249197 GGGCGATCACCGGTTAGTAC 60.249 60.000 2.97 0.00 39.04 2.73
4082 4853 0.107848 AAAGGGCGATCACCGGTTAG 60.108 55.000 2.97 0.00 39.04 2.34
4084 4855 1.376812 GAAAGGGCGATCACCGGTT 60.377 57.895 2.97 0.00 39.04 4.44
4088 4859 2.174319 GCGAGAAAGGGCGATCACC 61.174 63.158 0.00 0.00 0.00 4.02
4089 4860 1.424493 CTGCGAGAAAGGGCGATCAC 61.424 60.000 0.00 0.00 0.00 3.06
4095 4866 2.883267 ATCTGCCTGCGAGAAAGGGC 62.883 60.000 0.00 0.00 44.31 5.19
4098 4869 1.929836 GTGTATCTGCCTGCGAGAAAG 59.070 52.381 0.00 0.00 0.00 2.62
4105 4876 2.225019 GCATACATGTGTATCTGCCTGC 59.775 50.000 9.11 1.35 39.06 4.85
4109 4880 2.221749 CCGTGCATACATGTGTATCTGC 59.778 50.000 9.11 9.94 39.06 4.26
4124 4895 1.218875 CGCTTGTACAAGACCGTGCA 61.219 55.000 34.43 0.00 40.79 4.57
4135 4906 1.071814 TGAACCCCACCGCTTGTAC 59.928 57.895 0.00 0.00 0.00 2.90
4145 4916 0.534203 GAAGAACGCAGTGAACCCCA 60.534 55.000 0.00 0.00 45.00 4.96
4192 4982 1.608025 GGACATCTCCGTGCAAGACAA 60.608 52.381 0.00 0.00 0.00 3.18
4202 4992 2.885644 CGCGTTGGGACATCTCCG 60.886 66.667 0.00 0.00 39.30 4.63
4203 4993 1.359459 GAACGCGTTGGGACATCTCC 61.359 60.000 31.89 6.74 39.30 3.71
4209 4999 1.155424 TTCACTGAACGCGTTGGGAC 61.155 55.000 31.89 15.54 0.00 4.46
4210 5000 0.462225 TTTCACTGAACGCGTTGGGA 60.462 50.000 31.89 19.94 0.00 4.37
4211 5001 0.378962 TTTTCACTGAACGCGTTGGG 59.621 50.000 31.89 22.39 0.00 4.12
4212 5002 2.181426 TTTTTCACTGAACGCGTTGG 57.819 45.000 31.89 22.75 0.00 3.77
4213 5003 4.768145 TCTATTTTTCACTGAACGCGTTG 58.232 39.130 31.89 18.65 0.00 4.10
4214 5004 4.748102 TCTCTATTTTTCACTGAACGCGTT 59.252 37.500 26.97 26.97 0.00 4.84
4215 5005 4.304110 TCTCTATTTTTCACTGAACGCGT 58.696 39.130 5.58 5.58 0.00 6.01
4218 5008 5.447818 GGGCATCTCTATTTTTCACTGAACG 60.448 44.000 0.00 0.00 0.00 3.95
4219 5009 5.415701 TGGGCATCTCTATTTTTCACTGAAC 59.584 40.000 0.00 0.00 0.00 3.18
4220 5010 5.569355 TGGGCATCTCTATTTTTCACTGAA 58.431 37.500 0.00 0.00 0.00 3.02
4222 5012 5.188434 TCTGGGCATCTCTATTTTTCACTG 58.812 41.667 0.00 0.00 0.00 3.66
4225 5015 5.819991 AGTTCTGGGCATCTCTATTTTTCA 58.180 37.500 0.00 0.00 0.00 2.69
4232 5023 1.063942 TCGGAGTTCTGGGCATCTCTA 60.064 52.381 0.00 0.00 0.00 2.43
4240 5031 3.201290 CAATCAATCTCGGAGTTCTGGG 58.799 50.000 4.69 0.00 0.00 4.45
4251 5042 4.093998 CCAGTGCACACTACAATCAATCTC 59.906 45.833 21.04 0.00 40.20 2.75
4258 5049 2.878406 GTTCACCAGTGCACACTACAAT 59.122 45.455 21.04 0.00 40.20 2.71
4259 5050 2.285083 GTTCACCAGTGCACACTACAA 58.715 47.619 21.04 2.95 40.20 2.41
4260 5051 1.474320 GGTTCACCAGTGCACACTACA 60.474 52.381 21.04 0.00 40.20 2.74
4261 5052 1.226746 GGTTCACCAGTGCACACTAC 58.773 55.000 21.04 7.70 40.20 2.73
4279 5070 2.292794 ATACAGTACCGGCTGCGTGG 62.293 60.000 0.00 7.87 39.96 4.94
4316 5108 9.428097 GCTAATCTGACATGTACAATCATCATA 57.572 33.333 12.24 2.76 0.00 2.15
4317 5109 7.389884 GGCTAATCTGACATGTACAATCATCAT 59.610 37.037 12.24 6.49 0.00 2.45
4318 5110 6.707608 GGCTAATCTGACATGTACAATCATCA 59.292 38.462 12.24 7.37 0.00 3.07
4319 5111 6.933521 AGGCTAATCTGACATGTACAATCATC 59.066 38.462 12.24 3.57 0.00 2.92
4325 5117 6.976934 TCATAGGCTAATCTGACATGTACA 57.023 37.500 0.00 0.00 0.00 2.90
4330 5122 4.848660 ACCCATCATAGGCTAATCTGACAT 59.151 41.667 0.00 0.00 0.00 3.06
4337 5137 3.245052 GGCTCAACCCATCATAGGCTAAT 60.245 47.826 0.00 0.00 0.00 1.73
4399 5199 5.755861 GGTTCTCTCACATCTAATACAAGCC 59.244 44.000 0.00 0.00 0.00 4.35
4434 5235 6.741992 TTTGATTTGATGCACGTATCTCTT 57.258 33.333 0.00 0.00 0.00 2.85
4436 5237 7.975866 ATTTTTGATTTGATGCACGTATCTC 57.024 32.000 0.00 0.00 0.00 2.75
4437 5238 8.892723 TCTATTTTTGATTTGATGCACGTATCT 58.107 29.630 0.00 0.00 0.00 1.98
4438 5239 9.162793 CTCTATTTTTGATTTGATGCACGTATC 57.837 33.333 0.00 0.00 0.00 2.24
4440 5241 8.262715 TCTCTATTTTTGATTTGATGCACGTA 57.737 30.769 0.00 0.00 0.00 3.57
4441 5242 7.144722 TCTCTATTTTTGATTTGATGCACGT 57.855 32.000 0.00 0.00 0.00 4.49
4442 5243 9.162793 GTATCTCTATTTTTGATTTGATGCACG 57.837 33.333 0.00 0.00 0.00 5.34
4443 5244 9.162793 CGTATCTCTATTTTTGATTTGATGCAC 57.837 33.333 0.00 0.00 0.00 4.57
4444 5245 8.892723 ACGTATCTCTATTTTTGATTTGATGCA 58.107 29.630 0.00 0.00 0.00 3.96
4445 5246 9.162793 CACGTATCTCTATTTTTGATTTGATGC 57.837 33.333 0.00 0.00 0.00 3.91
4446 5247 9.162793 GCACGTATCTCTATTTTTGATTTGATG 57.837 33.333 0.00 0.00 0.00 3.07
4447 5248 8.892723 TGCACGTATCTCTATTTTTGATTTGAT 58.107 29.630 0.00 0.00 0.00 2.57
4448 5249 8.262715 TGCACGTATCTCTATTTTTGATTTGA 57.737 30.769 0.00 0.00 0.00 2.69
4449 5250 9.162793 GATGCACGTATCTCTATTTTTGATTTG 57.837 33.333 0.00 0.00 0.00 2.32
4450 5251 8.892723 TGATGCACGTATCTCTATTTTTGATTT 58.107 29.630 0.00 0.00 0.00 2.17
4451 5252 8.437360 TGATGCACGTATCTCTATTTTTGATT 57.563 30.769 0.00 0.00 0.00 2.57
4452 5253 8.501580 CATGATGCACGTATCTCTATTTTTGAT 58.498 33.333 0.00 0.00 0.00 2.57
4453 5254 7.495606 ACATGATGCACGTATCTCTATTTTTGA 59.504 33.333 0.00 0.00 0.00 2.69
4454 5255 7.633621 ACATGATGCACGTATCTCTATTTTTG 58.366 34.615 0.00 0.00 0.00 2.44
4455 5256 7.792374 ACATGATGCACGTATCTCTATTTTT 57.208 32.000 0.00 0.00 0.00 1.94
4456 5257 7.041780 GGAACATGATGCACGTATCTCTATTTT 60.042 37.037 0.00 0.00 0.00 1.82
4457 5258 6.425114 GGAACATGATGCACGTATCTCTATTT 59.575 38.462 0.00 0.00 0.00 1.40
4458 5259 5.928839 GGAACATGATGCACGTATCTCTATT 59.071 40.000 0.00 0.00 0.00 1.73
4459 5260 5.011023 TGGAACATGATGCACGTATCTCTAT 59.989 40.000 0.00 0.00 0.00 1.98
4460 5261 4.340950 TGGAACATGATGCACGTATCTCTA 59.659 41.667 0.00 0.00 0.00 2.43
4477 5278 2.870175 CCACCAACAGGTTATGGAACA 58.130 47.619 8.30 0.00 39.12 3.18
4482 5283 1.541147 CACAGCCACCAACAGGTTATG 59.459 52.381 0.00 0.00 31.84 1.90
4487 5288 1.686355 TAAACACAGCCACCAACAGG 58.314 50.000 0.00 0.00 0.00 4.00
4493 5300 4.314740 TGTTCAAATAAACACAGCCACC 57.685 40.909 0.00 0.00 34.31 4.61
4519 5336 1.550327 TGGTTTGCACAGTTGTTGGA 58.450 45.000 0.00 0.00 0.00 3.53
4520 5337 2.203401 CATGGTTTGCACAGTTGTTGG 58.797 47.619 0.00 0.00 0.00 3.77
4521 5338 2.203401 CCATGGTTTGCACAGTTGTTG 58.797 47.619 2.57 0.00 0.00 3.33
4580 6553 1.243902 ACAACGTGGCCATGTTAAGG 58.756 50.000 36.66 27.66 38.39 2.69
4648 6623 0.390472 CTCGCTGACCTTCACCTTCC 60.390 60.000 0.00 0.00 0.00 3.46
4709 6684 1.596727 GTGCGATGGATGCTCTCTTTC 59.403 52.381 0.00 0.00 0.00 2.62
4716 6691 2.202932 GTCCGTGCGATGGATGCT 60.203 61.111 0.00 0.00 35.40 3.79
4821 6806 2.280389 CCATCCCGTCAGGCATCG 60.280 66.667 0.00 0.00 35.76 3.84
4856 6841 4.704833 CAGGCCGGGTCTGTGTGG 62.705 72.222 20.50 0.00 29.72 4.17
4914 6899 1.521681 GCGGGAGAATCGTCAAGGG 60.522 63.158 0.00 0.00 34.37 3.95
4916 6901 1.878522 CCGCGGGAGAATCGTCAAG 60.879 63.158 20.10 0.00 34.37 3.02
4917 6902 2.183300 CCGCGGGAGAATCGTCAA 59.817 61.111 20.10 0.00 34.37 3.18
4918 6903 4.508128 GCCGCGGGAGAATCGTCA 62.508 66.667 29.38 0.00 34.37 4.35
4919 6904 4.508128 TGCCGCGGGAGAATCGTC 62.508 66.667 29.38 7.00 34.37 4.20
4920 6905 3.599285 TTTGCCGCGGGAGAATCGT 62.599 57.895 29.38 0.00 34.37 3.73
4921 6906 2.817834 TTTGCCGCGGGAGAATCG 60.818 61.111 29.38 0.00 34.37 3.34
4922 6907 1.706287 GAGTTTGCCGCGGGAGAATC 61.706 60.000 29.38 24.66 0.00 2.52
4927 6915 2.510064 AATACGAGTTTGCCGCGGGA 62.510 55.000 29.38 24.35 41.02 5.14
4939 6927 1.841450 GGCACCGAGAAGAATACGAG 58.159 55.000 0.00 0.00 0.00 4.18
4940 6928 0.099968 CGGCACCGAGAAGAATACGA 59.900 55.000 2.01 0.00 42.83 3.43
4941 6929 0.179145 ACGGCACCGAGAAGAATACG 60.179 55.000 17.40 0.00 42.83 3.06
4942 6930 1.278238 CACGGCACCGAGAAGAATAC 58.722 55.000 17.40 0.00 42.83 1.89
4943 6931 0.459585 GCACGGCACCGAGAAGAATA 60.460 55.000 17.40 0.00 42.83 1.75
4944 6932 1.741770 GCACGGCACCGAGAAGAAT 60.742 57.895 17.40 0.00 42.83 2.40
4945 6933 2.357034 GCACGGCACCGAGAAGAA 60.357 61.111 17.40 0.00 42.83 2.52
4946 6934 4.373116 GGCACGGCACCGAGAAGA 62.373 66.667 17.40 0.00 42.83 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.