Multiple sequence alignment - TraesCS1D01G326400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G326400 chr1D 100.000 9155 0 0 1 9155 419059735 419068889 0.000000e+00 16907.0
1 TraesCS1D01G326400 chr1D 89.521 2128 156 36 3745 5838 419169860 419171954 0.000000e+00 2632.0
2 TraesCS1D01G326400 chr1D 78.664 539 75 22 5570 6083 419026495 419025972 1.150000e-83 322.0
3 TraesCS1D01G326400 chr1D 82.951 305 34 12 7628 7921 418713399 418713102 9.120000e-65 259.0
4 TraesCS1D01G326400 chr1D 90.854 164 13 2 2 164 418753164 418753326 1.550000e-52 219.0
5 TraesCS1D01G326400 chr1D 90.244 164 14 2 2 164 419293839 419294001 7.200000e-51 213.0
6 TraesCS1D01G326400 chr1D 88.542 96 9 1 7332 7425 268963406 268963501 2.090000e-21 115.0
7 TraesCS1D01G326400 chr1D 79.429 175 17 12 5899 6068 419216591 419216431 1.260000e-18 106.0
8 TraesCS1D01G326400 chr1D 95.312 64 3 0 3626 3689 419169770 419169833 1.630000e-17 102.0
9 TraesCS1D01G326400 chr1D 89.189 74 5 3 8478 8549 419023996 419023924 1.270000e-13 89.8
10 TraesCS1D01G326400 chr1D 94.737 38 2 0 4409 4446 419170550 419170587 9.930000e-05 60.2
11 TraesCS1D01G326400 chr1A 96.110 3933 76 22 1343 5263 516150212 516154079 0.000000e+00 6344.0
12 TraesCS1D01G326400 chr1A 96.931 1955 49 6 5256 7201 516154137 516156089 0.000000e+00 3267.0
13 TraesCS1D01G326400 chr1A 94.651 1963 62 15 7196 9155 516157806 516159728 0.000000e+00 3003.0
14 TraesCS1D01G326400 chr1A 82.082 1172 96 39 200 1349 516147725 516148804 0.000000e+00 896.0
15 TraesCS1D01G326400 chr1A 88.764 89 7 3 9017 9104 588668567 588668481 1.260000e-18 106.0
16 TraesCS1D01G326400 chr6B 76.789 573 114 13 2627 3184 561688287 561687719 4.150000e-78 303.0
17 TraesCS1D01G326400 chr6B 85.567 97 8 6 327 420 135519013 135518920 7.570000e-16 97.1
18 TraesCS1D01G326400 chr3B 77.197 478 92 15 8670 9144 693726933 693727396 7.050000e-66 263.0
19 TraesCS1D01G326400 chr3B 82.156 269 40 8 8840 9104 603826792 603826528 3.330000e-54 224.0
20 TraesCS1D01G326400 chr3B 81.716 268 41 8 8841 9104 596243401 596243138 5.570000e-52 217.0
21 TraesCS1D01G326400 chr3B 94.048 84 3 1 7332 7413 556538496 556538579 9.650000e-25 126.0
22 TraesCS1D01G326400 chr4A 82.456 285 45 5 8838 9119 67143884 67144166 2.550000e-60 244.0
23 TraesCS1D01G326400 chr4A 88.542 96 9 1 7332 7425 405575847 405575752 2.090000e-21 115.0
24 TraesCS1D01G326400 chr4A 100.000 29 0 0 3526 3554 207366883 207366911 5.000000e-03 54.7
25 TraesCS1D01G326400 chr1B 83.658 257 38 2 5573 5825 566455594 566455338 1.190000e-58 239.0
26 TraesCS1D01G326400 chr1B 81.897 232 40 2 8860 9091 684732261 684732490 2.610000e-45 195.0
27 TraesCS1D01G326400 chr1B 84.000 100 10 4 8478 8576 566450462 566450368 3.520000e-14 91.6
28 TraesCS1D01G326400 chrUn 89.634 164 15 2 1 163 306602013 306601851 3.350000e-49 207.0
29 TraesCS1D01G326400 chrUn 89.634 164 15 2 1 163 339990878 339990716 3.350000e-49 207.0
30 TraesCS1D01G326400 chrUn 89.634 164 15 2 1 163 356659864 356659702 3.350000e-49 207.0
31 TraesCS1D01G326400 chrUn 90.244 41 4 0 3534 3574 98280860 98280900 5.000000e-03 54.7
32 TraesCS1D01G326400 chr2A 86.232 138 15 4 9020 9155 765482277 765482142 7.410000e-31 147.0
33 TraesCS1D01G326400 chr2A 91.667 48 4 0 3525 3572 513822195 513822242 5.930000e-07 67.6
34 TraesCS1D01G326400 chr2B 91.667 96 6 2 7332 7425 166470809 166470904 2.070000e-26 132.0
35 TraesCS1D01G326400 chr2B 91.176 68 4 2 9037 9103 87332653 87332719 3.520000e-14 91.6
36 TraesCS1D01G326400 chr2B 100.000 28 0 0 3527 3554 597550108 597550135 1.700000e-02 52.8
37 TraesCS1D01G326400 chr4D 90.909 99 4 2 7332 7425 190482548 190482450 2.680000e-25 128.0
38 TraesCS1D01G326400 chr4B 91.489 94 6 1 7334 7425 206799967 206800060 2.680000e-25 128.0
39 TraesCS1D01G326400 chr4B 83.471 121 8 4 19 131 603100119 603100235 1.630000e-17 102.0
40 TraesCS1D01G326400 chr7B 90.526 95 5 3 7334 7425 443312357 443312264 1.250000e-23 122.0
41 TraesCS1D01G326400 chr6D 88.542 96 9 1 7332 7425 352905293 352905388 2.090000e-21 115.0
42 TraesCS1D01G326400 chr5D 85.106 94 11 2 330 420 322907259 322907352 9.790000e-15 93.5
43 TraesCS1D01G326400 chr2D 91.489 47 4 0 3528 3574 107460793 107460839 2.130000e-06 65.8
44 TraesCS1D01G326400 chr3A 94.595 37 2 0 3528 3564 632608534 632608570 3.570000e-04 58.4
45 TraesCS1D01G326400 chr3A 100.000 28 0 0 3528 3555 154987737 154987764 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G326400 chr1D 419059735 419068889 9154 False 16907.0 16907 100.0000 1 9155 1 chr1D.!!$F3 9154
1 TraesCS1D01G326400 chr1D 419169770 419171954 2184 False 931.4 2632 93.1900 3626 5838 3 chr1D.!!$F5 2212
2 TraesCS1D01G326400 chr1D 419023924 419026495 2571 True 205.9 322 83.9265 5570 8549 2 chr1D.!!$R3 2979
3 TraesCS1D01G326400 chr1A 516147725 516159728 12003 False 3377.5 6344 92.4435 200 9155 4 chr1A.!!$F1 8955
4 TraesCS1D01G326400 chr6B 561687719 561688287 568 True 303.0 303 76.7890 2627 3184 1 chr6B.!!$R2 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.178301 GTTAGTAGGGCTGACTGGGC 59.822 60.0 2.64 0.00 31.72 5.36 F
1261 1281 0.182061 CCACCATGGATAGCTGCACT 59.818 55.0 21.47 0.00 40.96 4.40 F
1477 2913 0.253044 CCGGAAGAAGAATGCTCCCA 59.747 55.0 0.00 0.00 0.00 4.37 F
2317 3757 0.631212 AACCCATCTGTTCCCATCCC 59.369 55.0 0.00 0.00 0.00 3.85 F
2589 4029 0.610232 GGCACAACTCAGGCCATTCT 60.610 55.0 5.01 0.00 46.92 2.40 F
2859 4300 1.676746 CTGGCATGGATCTTGACAGG 58.323 55.0 18.82 1.47 44.88 4.00 F
3576 5031 2.480419 CTGCCGTGGTTTTAGTTCAGAG 59.520 50.0 0.00 0.00 0.00 3.35 F
4952 6457 0.667453 TTGCAGTGCGCTTTGAATGA 59.333 45.0 9.73 0.00 43.06 2.57 F
5885 7488 0.178995 TCTGTTGATGCCAGGTTGCA 60.179 50.0 0.00 0.00 46.94 4.08 F
6917 8527 0.328258 GGGTGGCACCTCTAATGTGT 59.672 55.0 33.87 0.00 38.64 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 3018 0.037590 TCAAACCGGGACCATCCTTG 59.962 55.000 6.32 0.0 36.57 3.61 R
2095 3535 2.205022 TTTCTGGAGCATGGTGAAGG 57.795 50.000 0.00 0.0 0.00 3.46 R
2364 3804 2.636403 TGCATAGGATGATCCCACTCAG 59.364 50.000 8.08 0.0 37.19 3.35 R
3612 5067 2.163818 TTGCTACCAACTCTGTTCGG 57.836 50.000 0.00 0.0 0.00 4.30 R
4471 5965 3.119137 TGACAACCTCATGATACTGACCG 60.119 47.826 0.00 0.0 0.00 4.79 R
4655 6160 3.666797 TCGTGTATTTCGTATAGCATGCG 59.333 43.478 13.01 0.0 39.81 4.73 R
5478 7058 1.004044 AGAGAACCTGGCACAAGGATG 59.996 52.381 0.00 0.0 38.70 3.51 R
6427 8035 0.664761 GATGGACACGATGGCAATGG 59.335 55.000 0.00 0.0 0.00 3.16 R
7328 10665 0.038166 TCAAGTCATGGTTCTGGGCC 59.962 55.000 0.00 0.0 0.00 5.80 R
8837 13053 0.689623 AGGAGAAGAGGTGCCAACAG 59.310 55.000 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.482627 TTTTTAACCATCACATGACCATTTAAC 57.517 29.630 0.00 0.00 0.00 2.01
46 47 7.767250 TTAACCATCACATGACCATTTAACA 57.233 32.000 0.00 0.00 0.00 2.41
47 48 6.662865 AACCATCACATGACCATTTAACAA 57.337 33.333 0.00 0.00 0.00 2.83
48 49 6.024552 ACCATCACATGACCATTTAACAAC 57.975 37.500 0.00 0.00 0.00 3.32
49 50 5.538053 ACCATCACATGACCATTTAACAACA 59.462 36.000 0.00 0.00 0.00 3.33
50 51 6.041409 ACCATCACATGACCATTTAACAACAA 59.959 34.615 0.00 0.00 0.00 2.83
51 52 6.365789 CCATCACATGACCATTTAACAACAAC 59.634 38.462 0.00 0.00 0.00 3.32
52 53 6.456795 TCACATGACCATTTAACAACAACA 57.543 33.333 0.00 0.00 0.00 3.33
53 54 7.048629 TCACATGACCATTTAACAACAACAT 57.951 32.000 0.00 0.00 0.00 2.71
54 55 6.922407 TCACATGACCATTTAACAACAACATG 59.078 34.615 0.00 0.00 38.59 3.21
55 56 5.695816 ACATGACCATTTAACAACAACATGC 59.304 36.000 0.00 0.00 36.92 4.06
56 57 5.268118 TGACCATTTAACAACAACATGCA 57.732 34.783 0.00 0.00 0.00 3.96
57 58 5.664457 TGACCATTTAACAACAACATGCAA 58.336 33.333 0.00 0.00 0.00 4.08
58 59 6.108687 TGACCATTTAACAACAACATGCAAA 58.891 32.000 0.00 0.00 0.00 3.68
59 60 6.595326 TGACCATTTAACAACAACATGCAAAA 59.405 30.769 0.00 0.00 0.00 2.44
60 61 7.014092 ACCATTTAACAACAACATGCAAAAG 57.986 32.000 0.00 0.00 0.00 2.27
61 62 6.820656 ACCATTTAACAACAACATGCAAAAGA 59.179 30.769 0.00 0.00 0.00 2.52
62 63 7.498570 ACCATTTAACAACAACATGCAAAAGAT 59.501 29.630 0.00 0.00 0.00 2.40
63 64 8.986847 CCATTTAACAACAACATGCAAAAGATA 58.013 29.630 0.00 0.00 0.00 1.98
69 70 9.719279 AACAACAACATGCAAAAGATAAATTTG 57.281 25.926 0.00 0.00 40.04 2.32
70 71 8.891720 ACAACAACATGCAAAAGATAAATTTGT 58.108 25.926 0.00 0.00 39.42 2.83
71 72 9.160576 CAACAACATGCAAAAGATAAATTTGTG 57.839 29.630 0.00 0.00 39.42 3.33
72 73 7.863666 ACAACATGCAAAAGATAAATTTGTGG 58.136 30.769 0.00 0.00 39.42 4.17
73 74 7.498570 ACAACATGCAAAAGATAAATTTGTGGT 59.501 29.630 0.00 0.00 39.42 4.16
74 75 8.344098 CAACATGCAAAAGATAAATTTGTGGTT 58.656 29.630 0.00 0.00 39.42 3.67
75 76 9.553064 AACATGCAAAAGATAAATTTGTGGTTA 57.447 25.926 0.00 0.00 39.42 2.85
76 77 9.206870 ACATGCAAAAGATAAATTTGTGGTTAG 57.793 29.630 0.00 0.00 39.42 2.34
77 78 9.206870 CATGCAAAAGATAAATTTGTGGTTAGT 57.793 29.630 0.00 0.00 39.42 2.24
88 89 8.546597 AAATTTGTGGTTAGTAAATTGATGGC 57.453 30.769 0.00 0.00 35.05 4.40
89 90 6.656632 TTTGTGGTTAGTAAATTGATGGCA 57.343 33.333 0.00 0.00 0.00 4.92
90 91 6.656632 TTGTGGTTAGTAAATTGATGGCAA 57.343 33.333 0.00 0.00 38.60 4.52
91 92 6.656632 TGTGGTTAGTAAATTGATGGCAAA 57.343 33.333 0.00 0.00 37.59 3.68
92 93 7.055667 TGTGGTTAGTAAATTGATGGCAAAA 57.944 32.000 0.00 0.00 37.59 2.44
93 94 7.151308 TGTGGTTAGTAAATTGATGGCAAAAG 58.849 34.615 0.00 0.00 37.59 2.27
94 95 7.014711 TGTGGTTAGTAAATTGATGGCAAAAGA 59.985 33.333 0.00 0.00 37.59 2.52
95 96 8.034804 GTGGTTAGTAAATTGATGGCAAAAGAT 58.965 33.333 0.00 0.00 37.59 2.40
96 97 9.249053 TGGTTAGTAAATTGATGGCAAAAGATA 57.751 29.630 0.00 0.00 37.59 1.98
108 109 9.874205 TGATGGCAAAAGATAAATCTTAAAAGG 57.126 29.630 5.67 0.00 45.83 3.11
109 110 9.317936 GATGGCAAAAGATAAATCTTAAAAGGG 57.682 33.333 5.67 0.00 45.83 3.95
110 111 7.619965 TGGCAAAAGATAAATCTTAAAAGGGG 58.380 34.615 5.67 0.00 45.83 4.79
111 112 7.456269 TGGCAAAAGATAAATCTTAAAAGGGGA 59.544 33.333 5.67 0.00 45.83 4.81
112 113 7.981789 GGCAAAAGATAAATCTTAAAAGGGGAG 59.018 37.037 5.67 0.00 45.83 4.30
113 114 8.749354 GCAAAAGATAAATCTTAAAAGGGGAGA 58.251 33.333 5.67 0.00 45.83 3.71
115 116 9.480861 AAAAGATAAATCTTAAAAGGGGAGAGG 57.519 33.333 5.67 0.00 45.83 3.69
116 117 8.407313 AAGATAAATCTTAAAAGGGGAGAGGA 57.593 34.615 3.36 0.00 44.80 3.71
117 118 8.407313 AGATAAATCTTAAAAGGGGAGAGGAA 57.593 34.615 0.00 0.00 31.97 3.36
118 119 8.498575 AGATAAATCTTAAAAGGGGAGAGGAAG 58.501 37.037 0.00 0.00 31.97 3.46
119 120 6.720217 AAATCTTAAAAGGGGAGAGGAAGA 57.280 37.500 0.00 0.00 0.00 2.87
120 121 6.720217 AATCTTAAAAGGGGAGAGGAAGAA 57.280 37.500 0.00 0.00 0.00 2.52
121 122 5.763876 TCTTAAAAGGGGAGAGGAAGAAG 57.236 43.478 0.00 0.00 0.00 2.85
122 123 5.163390 TCTTAAAAGGGGAGAGGAAGAAGT 58.837 41.667 0.00 0.00 0.00 3.01
123 124 5.611408 TCTTAAAAGGGGAGAGGAAGAAGTT 59.389 40.000 0.00 0.00 0.00 2.66
124 125 6.790963 TCTTAAAAGGGGAGAGGAAGAAGTTA 59.209 38.462 0.00 0.00 0.00 2.24
125 126 5.506730 AAAAGGGGAGAGGAAGAAGTTAG 57.493 43.478 0.00 0.00 0.00 2.34
126 127 3.856747 AGGGGAGAGGAAGAAGTTAGT 57.143 47.619 0.00 0.00 0.00 2.24
127 128 4.969136 AGGGGAGAGGAAGAAGTTAGTA 57.031 45.455 0.00 0.00 0.00 1.82
128 129 4.874199 AGGGGAGAGGAAGAAGTTAGTAG 58.126 47.826 0.00 0.00 0.00 2.57
129 130 3.962063 GGGGAGAGGAAGAAGTTAGTAGG 59.038 52.174 0.00 0.00 0.00 3.18
130 131 3.962063 GGGAGAGGAAGAAGTTAGTAGGG 59.038 52.174 0.00 0.00 0.00 3.53
131 132 3.385433 GGAGAGGAAGAAGTTAGTAGGGC 59.615 52.174 0.00 0.00 0.00 5.19
132 133 4.283337 GAGAGGAAGAAGTTAGTAGGGCT 58.717 47.826 0.00 0.00 0.00 5.19
133 134 4.027437 AGAGGAAGAAGTTAGTAGGGCTG 58.973 47.826 0.00 0.00 0.00 4.85
134 135 4.024670 GAGGAAGAAGTTAGTAGGGCTGA 58.975 47.826 0.00 0.00 0.00 4.26
135 136 3.770388 AGGAAGAAGTTAGTAGGGCTGAC 59.230 47.826 0.00 0.00 34.29 3.51
136 137 3.770388 GGAAGAAGTTAGTAGGGCTGACT 59.230 47.826 0.00 0.00 44.65 3.41
137 138 4.382147 GGAAGAAGTTAGTAGGGCTGACTG 60.382 50.000 2.64 0.00 42.34 3.51
138 139 3.100671 AGAAGTTAGTAGGGCTGACTGG 58.899 50.000 2.64 0.00 42.34 4.00
139 140 1.867363 AGTTAGTAGGGCTGACTGGG 58.133 55.000 2.64 0.00 41.71 4.45
140 141 0.178301 GTTAGTAGGGCTGACTGGGC 59.822 60.000 2.64 0.00 31.72 5.36
141 142 0.252513 TTAGTAGGGCTGACTGGGCA 60.253 55.000 2.64 0.00 0.00 5.36
142 143 0.252513 TAGTAGGGCTGACTGGGCAA 60.253 55.000 2.64 0.00 0.00 4.52
143 144 1.078143 GTAGGGCTGACTGGGCAAG 60.078 63.158 0.00 0.00 0.00 4.01
144 145 2.300967 TAGGGCTGACTGGGCAAGG 61.301 63.158 0.00 0.00 0.00 3.61
145 146 2.763988 TAGGGCTGACTGGGCAAGGA 62.764 60.000 0.00 0.00 0.00 3.36
146 147 2.436109 GGCTGACTGGGCAAGGAA 59.564 61.111 0.00 0.00 0.00 3.36
147 148 1.228552 GGCTGACTGGGCAAGGAAA 60.229 57.895 0.00 0.00 0.00 3.13
148 149 1.246737 GGCTGACTGGGCAAGGAAAG 61.247 60.000 0.00 0.00 0.00 2.62
149 150 0.250901 GCTGACTGGGCAAGGAAAGA 60.251 55.000 0.00 0.00 0.00 2.52
150 151 1.819305 GCTGACTGGGCAAGGAAAGAA 60.819 52.381 0.00 0.00 0.00 2.52
151 152 2.586425 CTGACTGGGCAAGGAAAGAAA 58.414 47.619 0.00 0.00 0.00 2.52
152 153 2.555757 CTGACTGGGCAAGGAAAGAAAG 59.444 50.000 0.00 0.00 0.00 2.62
153 154 2.174639 TGACTGGGCAAGGAAAGAAAGA 59.825 45.455 0.00 0.00 0.00 2.52
154 155 2.816672 GACTGGGCAAGGAAAGAAAGAG 59.183 50.000 0.00 0.00 0.00 2.85
155 156 2.443255 ACTGGGCAAGGAAAGAAAGAGA 59.557 45.455 0.00 0.00 0.00 3.10
156 157 3.117512 ACTGGGCAAGGAAAGAAAGAGAA 60.118 43.478 0.00 0.00 0.00 2.87
157 158 3.891366 CTGGGCAAGGAAAGAAAGAGAAA 59.109 43.478 0.00 0.00 0.00 2.52
158 159 4.285863 TGGGCAAGGAAAGAAAGAGAAAA 58.714 39.130 0.00 0.00 0.00 2.29
159 160 4.342092 TGGGCAAGGAAAGAAAGAGAAAAG 59.658 41.667 0.00 0.00 0.00 2.27
160 161 4.262207 GGGCAAGGAAAGAAAGAGAAAAGG 60.262 45.833 0.00 0.00 0.00 3.11
161 162 4.262207 GGCAAGGAAAGAAAGAGAAAAGGG 60.262 45.833 0.00 0.00 0.00 3.95
162 163 4.262207 GCAAGGAAAGAAAGAGAAAAGGGG 60.262 45.833 0.00 0.00 0.00 4.79
163 164 4.119556 AGGAAAGAAAGAGAAAAGGGGG 57.880 45.455 0.00 0.00 0.00 5.40
164 165 3.727391 AGGAAAGAAAGAGAAAAGGGGGA 59.273 43.478 0.00 0.00 0.00 4.81
165 166 4.358310 AGGAAAGAAAGAGAAAAGGGGGAT 59.642 41.667 0.00 0.00 0.00 3.85
166 167 4.707448 GGAAAGAAAGAGAAAAGGGGGATC 59.293 45.833 0.00 0.00 0.00 3.36
167 168 5.517477 GGAAAGAAAGAGAAAAGGGGGATCT 60.517 44.000 0.00 0.00 0.00 2.75
168 169 6.297068 GGAAAGAAAGAGAAAAGGGGGATCTA 60.297 42.308 0.00 0.00 0.00 1.98
169 170 6.917208 AAGAAAGAGAAAAGGGGGATCTAT 57.083 37.500 0.00 0.00 0.00 1.98
170 171 6.917208 AGAAAGAGAAAAGGGGGATCTATT 57.083 37.500 0.00 0.00 0.00 1.73
171 172 7.290658 AGAAAGAGAAAAGGGGGATCTATTT 57.709 36.000 0.00 0.00 37.33 1.40
172 173 8.407313 AGAAAGAGAAAAGGGGGATCTATTTA 57.593 34.615 0.00 0.00 35.45 1.40
173 174 9.019542 AGAAAGAGAAAAGGGGGATCTATTTAT 57.980 33.333 0.00 0.00 35.45 1.40
226 228 8.751335 CGTTTTGCAATATACAGTGAACTTTTT 58.249 29.630 0.00 0.00 0.00 1.94
304 306 6.260050 AGTGAACCTTTTACATGTACACACTG 59.740 38.462 17.64 0.00 33.51 3.66
317 319 8.559536 ACATGTACACACTGAAGTTCTTTTATG 58.440 33.333 0.00 0.00 0.00 1.90
319 321 8.725405 TGTACACACTGAAGTTCTTTTATGAA 57.275 30.769 4.17 0.00 0.00 2.57
410 412 8.366671 ACACAGAGAACTTTTCTAATACACAC 57.633 34.615 0.00 0.00 40.87 3.82
411 413 8.204836 ACACAGAGAACTTTTCTAATACACACT 58.795 33.333 0.00 0.00 40.87 3.55
460 462 7.589587 TGATCATTTTTGTTGTGTACATCGAAC 59.410 33.333 0.00 3.74 36.44 3.95
461 463 6.786207 TCATTTTTGTTGTGTACATCGAACA 58.214 32.000 0.00 6.41 36.44 3.18
462 464 6.689241 TCATTTTTGTTGTGTACATCGAACAC 59.311 34.615 11.15 11.15 45.96 3.32
507 526 9.605955 CTTTTTGTTGTATACATCGAACATTGA 57.394 29.630 13.84 0.45 36.44 2.57
510 529 7.659652 TGTTGTATACATCGAACATTGAACA 57.340 32.000 6.36 0.56 0.00 3.18
539 558 9.810545 TTTTTAATACAGGGTGAACTTTTCTTG 57.189 29.630 0.00 0.00 0.00 3.02
542 561 6.824305 ATACAGGGTGAACTTTTCTTGATG 57.176 37.500 0.00 0.00 0.00 3.07
552 571 8.345565 GTGAACTTTTCTTGATGTACACTGAAT 58.654 33.333 0.00 0.00 0.00 2.57
591 610 9.309516 CATGTGCTGAGCAATTTTCTAAAATAT 57.690 29.630 9.51 0.00 41.47 1.28
630 649 8.648693 TCAATAGGGTTTTAAGTATCTAGCTCC 58.351 37.037 0.00 0.00 0.00 4.70
631 650 8.652290 CAATAGGGTTTTAAGTATCTAGCTCCT 58.348 37.037 0.00 0.00 0.00 3.69
632 651 9.893975 AATAGGGTTTTAAGTATCTAGCTCCTA 57.106 33.333 0.00 0.00 0.00 2.94
633 652 9.893975 ATAGGGTTTTAAGTATCTAGCTCCTAA 57.106 33.333 0.00 0.00 0.00 2.69
656 675 4.525912 ATTTACCAGGCTGCTTTTCTTG 57.474 40.909 9.56 0.00 0.00 3.02
658 677 0.185901 ACCAGGCTGCTTTTCTTGGA 59.814 50.000 9.56 0.00 0.00 3.53
659 678 0.600057 CCAGGCTGCTTTTCTTGGAC 59.400 55.000 9.56 0.00 0.00 4.02
660 679 1.321474 CAGGCTGCTTTTCTTGGACA 58.679 50.000 0.00 0.00 0.00 4.02
661 680 1.682854 CAGGCTGCTTTTCTTGGACAA 59.317 47.619 0.00 0.00 0.00 3.18
713 732 0.515564 CAGTTCGTCCGCCGATTTTT 59.484 50.000 0.00 0.00 46.75 1.94
738 757 3.451894 GCTCATTGGGCCGGGTTG 61.452 66.667 2.18 0.00 0.00 3.77
788 807 1.076777 TAGCCTGCAAATGCCCTCC 60.077 57.895 2.46 0.00 41.18 4.30
802 821 0.614979 CCCTCCGGTTCTCTTCTCCA 60.615 60.000 0.00 0.00 0.00 3.86
806 825 0.390472 CCGGTTCTCTTCTCCAGCAC 60.390 60.000 0.00 0.00 0.00 4.40
867 886 4.125695 CTCCGTCCCGACCGTTCC 62.126 72.222 0.00 0.00 0.00 3.62
915 934 4.416738 GCTGCCACCTCCTCCACC 62.417 72.222 0.00 0.00 0.00 4.61
916 935 4.087892 CTGCCACCTCCTCCACCG 62.088 72.222 0.00 0.00 0.00 4.94
923 942 3.866582 CTCCTCCACCGGCCCATC 61.867 72.222 0.00 0.00 0.00 3.51
952 971 0.603707 CTGCGGCTCCTGAACTTCAA 60.604 55.000 0.00 0.00 0.00 2.69
1044 1063 4.676586 CGCGTCGGTTTTGCCACC 62.677 66.667 0.00 0.00 36.97 4.61
1061 1080 0.966920 ACCCGAATGGCGAGGTATAG 59.033 55.000 0.00 0.00 44.57 1.31
1064 1083 1.887198 CCGAATGGCGAGGTATAGTCT 59.113 52.381 0.00 0.00 44.57 3.24
1065 1084 3.079578 CCGAATGGCGAGGTATAGTCTA 58.920 50.000 0.00 0.00 44.57 2.59
1066 1085 3.695060 CCGAATGGCGAGGTATAGTCTAT 59.305 47.826 0.00 0.00 44.57 1.98
1067 1086 4.880120 CCGAATGGCGAGGTATAGTCTATA 59.120 45.833 0.00 0.00 44.57 1.31
1068 1087 5.220815 CCGAATGGCGAGGTATAGTCTATAC 60.221 48.000 18.28 18.28 44.57 1.47
1069 1088 5.585445 CGAATGGCGAGGTATAGTCTATACT 59.415 44.000 23.29 13.13 44.57 2.12
1070 1089 6.093771 CGAATGGCGAGGTATAGTCTATACTT 59.906 42.308 23.29 18.56 44.57 2.24
1071 1090 7.393841 AATGGCGAGGTATAGTCTATACTTC 57.606 40.000 23.13 23.13 41.60 3.01
1072 1091 5.872963 TGGCGAGGTATAGTCTATACTTCA 58.127 41.667 28.23 15.53 43.79 3.02
1073 1092 6.301486 TGGCGAGGTATAGTCTATACTTCAA 58.699 40.000 28.23 17.21 43.79 2.69
1074 1093 6.946583 TGGCGAGGTATAGTCTATACTTCAAT 59.053 38.462 28.23 13.42 43.79 2.57
1075 1094 7.450634 TGGCGAGGTATAGTCTATACTTCAATT 59.549 37.037 28.23 11.93 43.79 2.32
1076 1095 7.969508 GGCGAGGTATAGTCTATACTTCAATTC 59.030 40.741 28.23 18.51 43.79 2.17
1077 1096 7.693120 GCGAGGTATAGTCTATACTTCAATTCG 59.307 40.741 28.23 23.11 43.79 3.34
1078 1097 8.933807 CGAGGTATAGTCTATACTTCAATTCGA 58.066 37.037 28.23 0.00 43.79 3.71
1107 1127 2.688477 CCCTTAGATCTCAAGCCCTCT 58.312 52.381 0.00 0.00 0.00 3.69
1115 1135 6.072199 AGATCTCAAGCCCTCTTTACAAAT 57.928 37.500 0.00 0.00 0.00 2.32
1145 1165 3.128242 CAGCTCCTGTCCAAATAGCAAAG 59.872 47.826 0.00 0.00 35.63 2.77
1148 1168 3.084039 TCCTGTCCAAATAGCAAAGCTG 58.916 45.455 1.04 0.00 40.10 4.24
1168 1188 5.355350 AGCTGTGCTAACCTGTTGATTTATC 59.645 40.000 0.00 0.00 36.99 1.75
1169 1189 5.727791 GCTGTGCTAACCTGTTGATTTATCG 60.728 44.000 0.00 0.00 0.00 2.92
1170 1190 5.242434 TGTGCTAACCTGTTGATTTATCGT 58.758 37.500 0.00 0.00 0.00 3.73
1171 1191 5.350365 TGTGCTAACCTGTTGATTTATCGTC 59.650 40.000 0.00 0.00 0.00 4.20
1172 1192 4.565166 TGCTAACCTGTTGATTTATCGTCG 59.435 41.667 0.00 0.00 0.00 5.12
1175 1195 4.451629 ACCTGTTGATTTATCGTCGTCT 57.548 40.909 0.00 0.00 0.00 4.18
1185 1205 2.460243 ATCGTCGTCTTCTGATGTCG 57.540 50.000 4.34 4.34 40.34 4.35
1210 1230 0.447801 GGCAACAACGTATGCTGGAG 59.552 55.000 17.08 0.00 42.20 3.86
1213 1233 2.412870 CAACAACGTATGCTGGAGACA 58.587 47.619 0.00 0.00 39.59 3.41
1218 1238 2.960819 ACGTATGCTGGAGACAAACTC 58.039 47.619 0.00 0.00 42.06 3.01
1232 1252 1.002087 CAAACTCTACGGAGCAACCCT 59.998 52.381 0.00 0.00 42.98 4.34
1233 1253 0.896226 AACTCTACGGAGCAACCCTC 59.104 55.000 0.00 0.00 42.98 4.30
1240 1260 3.701454 GAGCAACCCTCCGAGACT 58.299 61.111 0.00 0.00 34.35 3.24
1241 1261 1.216710 GAGCAACCCTCCGAGACTG 59.783 63.158 0.00 0.00 34.35 3.51
1258 1278 1.152902 TGCCACCATGGATAGCTGC 60.153 57.895 21.47 11.35 40.96 5.25
1261 1281 0.182061 CCACCATGGATAGCTGCACT 59.818 55.000 21.47 0.00 40.96 4.40
1306 1326 1.452110 TGGAGTTGACATGGATTGCG 58.548 50.000 0.00 0.00 0.00 4.85
1349 1369 6.092748 GTGGGAATGTCACATGTGAATTTAC 58.907 40.000 29.42 23.39 41.85 2.01
1351 1371 5.184864 GGGAATGTCACATGTGAATTTACCA 59.815 40.000 30.79 23.86 41.85 3.25
1352 1372 6.127366 GGGAATGTCACATGTGAATTTACCAT 60.127 38.462 30.79 24.67 41.85 3.55
1368 2804 9.185680 GAATTTACCATGTACTTTTGTAGGGAT 57.814 33.333 0.00 0.00 35.28 3.85
1371 2807 5.183228 ACCATGTACTTTTGTAGGGATTCG 58.817 41.667 0.00 0.00 35.28 3.34
1372 2808 4.574828 CCATGTACTTTTGTAGGGATTCGG 59.425 45.833 0.00 0.00 35.28 4.30
1378 2814 1.946984 TTGTAGGGATTCGGTGGAGT 58.053 50.000 0.00 0.00 0.00 3.85
1379 2815 1.946984 TGTAGGGATTCGGTGGAGTT 58.053 50.000 0.00 0.00 0.00 3.01
1398 2834 5.396213 GGAGTTGAGTTGCTATGAGAGGATT 60.396 44.000 0.00 0.00 0.00 3.01
1408 2844 3.764160 GAGAGGATTGCGGCCCTGG 62.764 68.421 0.00 0.00 31.84 4.45
1425 2861 2.746359 GGGAGCATCGGGGATCAG 59.254 66.667 0.00 0.00 34.37 2.90
1429 2865 2.190313 GCATCGGGGATCAGTGCA 59.810 61.111 0.00 0.00 35.93 4.57
1447 2883 2.072298 GCATCTATGCGGATGAACTCC 58.928 52.381 15.21 0.00 44.67 3.85
1473 2909 0.615331 TGCTCCGGAAGAAGAATGCT 59.385 50.000 5.23 0.00 0.00 3.79
1477 2913 0.253044 CCGGAAGAAGAATGCTCCCA 59.747 55.000 0.00 0.00 0.00 4.37
1480 2916 3.019564 CGGAAGAAGAATGCTCCCATTT 58.980 45.455 0.00 0.00 41.60 2.32
1485 2921 4.801164 AGAAGAATGCTCCCATTTGCTAT 58.199 39.130 0.00 0.00 41.60 2.97
1562 2999 7.867445 AAAACAACTGCTTTTACATTATCGG 57.133 32.000 0.00 0.00 0.00 4.18
1567 3004 5.126067 ACTGCTTTTACATTATCGGATGCT 58.874 37.500 0.00 0.00 0.00 3.79
1568 3005 5.590259 ACTGCTTTTACATTATCGGATGCTT 59.410 36.000 0.00 0.00 0.00 3.91
1569 3006 5.820131 TGCTTTTACATTATCGGATGCTTG 58.180 37.500 0.00 0.00 0.00 4.01
1570 3007 5.356751 TGCTTTTACATTATCGGATGCTTGT 59.643 36.000 0.00 4.44 0.00 3.16
1571 3008 6.127758 TGCTTTTACATTATCGGATGCTTGTT 60.128 34.615 0.00 0.00 0.00 2.83
1572 3009 7.066404 TGCTTTTACATTATCGGATGCTTGTTA 59.934 33.333 0.00 0.00 0.00 2.41
1573 3010 8.076178 GCTTTTACATTATCGGATGCTTGTTAT 58.924 33.333 0.00 0.00 0.00 1.89
1574 3011 9.599322 CTTTTACATTATCGGATGCTTGTTATC 57.401 33.333 0.00 0.00 0.00 1.75
1575 3012 5.845985 ACATTATCGGATGCTTGTTATCG 57.154 39.130 0.00 0.00 0.00 2.92
1576 3013 5.538118 ACATTATCGGATGCTTGTTATCGA 58.462 37.500 0.00 0.00 0.00 3.59
1577 3014 5.405571 ACATTATCGGATGCTTGTTATCGAC 59.594 40.000 0.00 0.00 0.00 4.20
1578 3015 2.951457 TCGGATGCTTGTTATCGACA 57.049 45.000 0.00 0.00 36.19 4.35
1579 3016 3.239587 TCGGATGCTTGTTATCGACAA 57.760 42.857 0.00 0.00 45.70 3.18
1580 3017 3.591023 TCGGATGCTTGTTATCGACAAA 58.409 40.909 0.00 0.00 46.99 2.83
1581 3018 3.369756 TCGGATGCTTGTTATCGACAAAC 59.630 43.478 5.70 5.70 46.99 2.93
1582 3019 3.124466 CGGATGCTTGTTATCGACAAACA 59.876 43.478 10.31 10.31 46.99 2.83
1583 3020 4.377943 CGGATGCTTGTTATCGACAAACAA 60.378 41.667 20.61 20.61 46.99 2.83
1589 3026 5.621197 TTGTTATCGACAAACAAGGATGG 57.379 39.130 18.91 0.00 44.95 3.51
1590 3027 4.647611 TGTTATCGACAAACAAGGATGGT 58.352 39.130 11.63 0.00 34.04 3.55
1591 3028 4.693566 TGTTATCGACAAACAAGGATGGTC 59.306 41.667 11.63 0.00 34.04 4.02
1592 3029 2.178912 TCGACAAACAAGGATGGTCC 57.821 50.000 0.00 0.00 36.58 4.46
1633 3070 8.547967 TGAACTTTGTCATCTTATCCTGTTAC 57.452 34.615 0.00 0.00 0.00 2.50
1642 3079 5.306532 TCTTATCCTGTTACGTGTCAGAC 57.693 43.478 18.72 0.00 34.02 3.51
1660 3099 1.689273 GACACCACACACCTCTCTTCT 59.311 52.381 0.00 0.00 0.00 2.85
1668 3107 4.520874 CACACACCTCTCTTCTCTTGTCTA 59.479 45.833 0.00 0.00 0.00 2.59
1701 3140 0.761187 TCTCACTGCAGTCCAGCTTT 59.239 50.000 18.64 0.00 45.78 3.51
1716 3155 5.755861 GTCCAGCTTTATTTAGCCTGAGTAG 59.244 44.000 0.00 0.00 42.20 2.57
1718 3157 5.363939 CAGCTTTATTTAGCCTGAGTAGCT 58.636 41.667 0.00 0.00 42.20 3.32
1751 3190 5.966742 AAGCACTTTTAGTTTGGATCTCC 57.033 39.130 0.00 0.00 0.00 3.71
1840 3279 4.535781 TGAGTGGGGTTGGAATTATGATG 58.464 43.478 0.00 0.00 0.00 3.07
1871 3310 2.199652 CGGCCTTTTCTGTTGCCCA 61.200 57.895 0.00 0.00 40.87 5.36
2028 3467 9.209175 ACTTAATCACTTGTCTAGCAGTTTAAG 57.791 33.333 13.07 13.07 34.56 1.85
2029 3468 9.209175 CTTAATCACTTGTCTAGCAGTTTAAGT 57.791 33.333 0.00 0.00 30.04 2.24
2032 3471 8.764524 ATCACTTGTCTAGCAGTTTAAGTAAG 57.235 34.615 0.00 0.00 0.00 2.34
2033 3472 6.645415 TCACTTGTCTAGCAGTTTAAGTAAGC 59.355 38.462 0.00 0.00 0.00 3.09
2034 3473 5.932883 ACTTGTCTAGCAGTTTAAGTAAGCC 59.067 40.000 0.00 0.00 0.00 4.35
2035 3474 5.477607 TGTCTAGCAGTTTAAGTAAGCCA 57.522 39.130 0.00 0.00 0.00 4.75
2036 3475 5.235516 TGTCTAGCAGTTTAAGTAAGCCAC 58.764 41.667 0.00 0.00 0.00 5.01
2037 3476 5.221561 TGTCTAGCAGTTTAAGTAAGCCACA 60.222 40.000 0.00 0.00 0.00 4.17
2038 3477 5.875359 GTCTAGCAGTTTAAGTAAGCCACAT 59.125 40.000 0.00 0.00 0.00 3.21
2039 3478 6.036191 GTCTAGCAGTTTAAGTAAGCCACATC 59.964 42.308 0.00 0.00 0.00 3.06
2040 3479 4.651778 AGCAGTTTAAGTAAGCCACATCA 58.348 39.130 0.00 0.00 0.00 3.07
2041 3480 4.455877 AGCAGTTTAAGTAAGCCACATCAC 59.544 41.667 0.00 0.00 0.00 3.06
2071 3510 2.811431 GGCCAAACCAAAATAAAGCCAC 59.189 45.455 0.00 0.00 39.01 5.01
2072 3511 3.471680 GCCAAACCAAAATAAAGCCACA 58.528 40.909 0.00 0.00 0.00 4.17
2073 3512 3.249799 GCCAAACCAAAATAAAGCCACAC 59.750 43.478 0.00 0.00 0.00 3.82
2074 3513 4.446371 CCAAACCAAAATAAAGCCACACA 58.554 39.130 0.00 0.00 0.00 3.72
2075 3514 5.062528 CCAAACCAAAATAAAGCCACACAT 58.937 37.500 0.00 0.00 0.00 3.21
2076 3515 6.226787 CCAAACCAAAATAAAGCCACACATA 58.773 36.000 0.00 0.00 0.00 2.29
2077 3516 6.368516 CCAAACCAAAATAAAGCCACACATAG 59.631 38.462 0.00 0.00 0.00 2.23
2082 3522 6.808212 CCAAAATAAAGCCACACATAGACTTG 59.192 38.462 0.00 0.00 0.00 3.16
2095 3535 2.849294 AGACTTGCAGGAACCTCTTC 57.151 50.000 1.40 0.00 0.00 2.87
2196 3636 2.010145 TCCTGCACGAAAGACATAGC 57.990 50.000 0.00 0.00 0.00 2.97
2237 3677 2.234168 GCTTTAGTCTTCGGAACCTCCT 59.766 50.000 0.00 0.00 33.30 3.69
2317 3757 0.631212 AACCCATCTGTTCCCATCCC 59.369 55.000 0.00 0.00 0.00 3.85
2335 3775 3.580319 ACCCAACCCTGTCCCAGC 61.580 66.667 0.00 0.00 0.00 4.85
2352 3792 3.270027 CCAGCGATCATACAAAGGTTCA 58.730 45.455 0.00 0.00 0.00 3.18
2406 3846 1.901159 CCCTCATCCATGCAACCAAAA 59.099 47.619 0.00 0.00 0.00 2.44
2532 3972 2.032030 CACTGCTGGTTTACTTGGTTCG 60.032 50.000 0.00 0.00 0.00 3.95
2539 3979 5.448904 GCTGGTTTACTTGGTTCGTGTTTTA 60.449 40.000 0.00 0.00 0.00 1.52
2541 3981 5.879223 TGGTTTACTTGGTTCGTGTTTTAGA 59.121 36.000 0.00 0.00 0.00 2.10
2589 4029 0.610232 GGCACAACTCAGGCCATTCT 60.610 55.000 5.01 0.00 46.92 2.40
2859 4300 1.676746 CTGGCATGGATCTTGACAGG 58.323 55.000 18.82 1.47 44.88 4.00
3026 4475 6.531503 TTCAAACCCTTGAACATTGTGTTA 57.468 33.333 0.00 0.00 44.76 2.41
3220 4672 3.631686 TCACCATGTCCTGTCAAACAAAG 59.368 43.478 0.00 0.00 0.00 2.77
3542 4997 3.751518 ACACAACACAAATACTCCCTCC 58.248 45.455 0.00 0.00 0.00 4.30
3576 5031 2.480419 CTGCCGTGGTTTTAGTTCAGAG 59.520 50.000 0.00 0.00 0.00 3.35
3601 5056 6.402222 ACCATGTATCTGTCTTCTTCTGAAC 58.598 40.000 0.00 0.00 0.00 3.18
3612 5067 6.260936 TGTCTTCTTCTGAACTGAAATGAACC 59.739 38.462 0.00 0.00 0.00 3.62
3895 5358 8.420222 GTGATCATCTCAGTATCCCATTATAGG 58.580 40.741 0.00 0.00 33.51 2.57
4225 5689 4.702612 TGTACTTTGTTGTTTGGAGCTTGA 59.297 37.500 0.00 0.00 0.00 3.02
4404 5868 8.885494 ATAGTCATTCAGCAATAGAGAAGTTC 57.115 34.615 0.00 0.00 0.00 3.01
4406 5870 5.578727 GTCATTCAGCAATAGAGAAGTTCGT 59.421 40.000 0.00 0.00 0.00 3.85
4407 5871 6.091441 GTCATTCAGCAATAGAGAAGTTCGTT 59.909 38.462 0.00 0.00 0.00 3.85
4415 5909 6.403200 GCAATAGAGAAGTTCGTTTATTGGCA 60.403 38.462 23.35 0.00 0.00 4.92
4416 5910 6.663944 ATAGAGAAGTTCGTTTATTGGCAC 57.336 37.500 0.00 0.00 0.00 5.01
4551 6053 5.046950 CAGTACAGGAGCCTCTTAACTTCTT 60.047 44.000 0.00 0.00 0.00 2.52
4655 6160 3.317430 AGGCTGAGCTTGCATTTTATAGC 59.683 43.478 3.72 0.00 0.00 2.97
4705 6210 1.814248 GCCCCTAATTAGCTTGGGTCG 60.814 57.143 20.32 4.17 38.57 4.79
4707 6212 2.561569 CCCTAATTAGCTTGGGTCGTG 58.438 52.381 6.99 0.00 33.71 4.35
4880 6385 1.002888 CATTGCTCTCCTGTCCACAGT 59.997 52.381 5.99 0.00 42.27 3.55
4881 6386 1.131638 TTGCTCTCCTGTCCACAGTT 58.868 50.000 5.99 0.00 42.27 3.16
4882 6387 1.131638 TGCTCTCCTGTCCACAGTTT 58.868 50.000 5.99 0.00 42.27 2.66
4883 6388 1.490490 TGCTCTCCTGTCCACAGTTTT 59.510 47.619 5.99 0.00 42.27 2.43
4884 6389 2.092429 TGCTCTCCTGTCCACAGTTTTT 60.092 45.455 5.99 0.00 42.27 1.94
4885 6390 2.550180 GCTCTCCTGTCCACAGTTTTTC 59.450 50.000 5.99 0.00 42.27 2.29
4919 6424 7.662897 TGGGTACAATAAGGTTGTTTGAAATC 58.337 34.615 0.00 0.00 34.11 2.17
4952 6457 0.667453 TTGCAGTGCGCTTTGAATGA 59.333 45.000 9.73 0.00 43.06 2.57
5156 6661 1.927487 AGCATCAAAGGTCAATGGCA 58.073 45.000 0.00 0.00 0.00 4.92
5293 6867 7.657354 CCAAGTGCTAACAATGCTGTAGATATA 59.343 37.037 0.00 0.00 33.45 0.86
5404 6984 2.322355 AAGTGGCGATCTTGATCCTG 57.678 50.000 5.18 0.00 0.00 3.86
5626 7209 0.454600 CTTGTCTCATGTGGCCATGC 59.545 55.000 9.72 0.00 46.64 4.06
5884 7487 1.133790 GATCTGTTGATGCCAGGTTGC 59.866 52.381 0.00 0.00 32.19 4.17
5885 7488 0.178995 TCTGTTGATGCCAGGTTGCA 60.179 50.000 0.00 0.00 46.94 4.08
6133 7740 7.932491 GCATATCAATATATCATCACCAGCTCT 59.068 37.037 0.00 0.00 0.00 4.09
6166 7774 1.669115 GATGCTGGTGTGTCGCAGT 60.669 57.895 0.00 0.00 37.06 4.40
6180 7788 2.588596 CAGTCGCTGCCACACACA 60.589 61.111 0.00 0.00 0.00 3.72
6427 8035 2.033801 ACTGTTGCTGCATCTTTGTGTC 59.966 45.455 1.84 0.00 0.00 3.67
6467 8075 3.781965 TCATCCATCTGACTCCATCCAAA 59.218 43.478 0.00 0.00 0.00 3.28
6488 8096 8.464404 TCCAAATCATCTCATTTTGAATCTGTC 58.536 33.333 0.00 0.00 33.24 3.51
6533 8141 6.905076 CCATTTCACCGTAAATCATTTAGTCG 59.095 38.462 0.00 0.00 0.00 4.18
6623 8233 1.630878 ACTTTGCCCTCTCGATCCTTT 59.369 47.619 0.00 0.00 0.00 3.11
6687 8297 3.467803 ACTGGTCACTTGTTGCTACTTC 58.532 45.455 0.00 0.00 0.00 3.01
6719 8329 3.877559 CTTCCTTATCACCATCTGCACA 58.122 45.455 0.00 0.00 0.00 4.57
6776 8386 4.076394 AGCACCTTCGTTGGCTAAATTAA 58.924 39.130 0.00 0.00 34.25 1.40
6819 8429 3.874383 TTCCAACATCTCCAACCAAGA 57.126 42.857 0.00 0.00 0.00 3.02
6860 8470 6.825610 TGTGAAAGCTTTGGATTACCATTTT 58.174 32.000 18.30 0.00 46.34 1.82
6877 8487 4.399303 CCATTTTGGAGGAGTTGGTACATC 59.601 45.833 0.00 0.00 40.96 3.06
6917 8527 0.328258 GGGTGGCACCTCTAATGTGT 59.672 55.000 33.87 0.00 38.64 3.72
7032 8647 3.123050 GTGTGGCATGTCCTTTTTGAAC 58.877 45.455 0.00 0.00 35.26 3.18
7055 8670 4.437239 CAGTAGATGAACTTCTCGCCAAT 58.563 43.478 0.00 0.00 0.00 3.16
7056 8671 4.872691 CAGTAGATGAACTTCTCGCCAATT 59.127 41.667 0.00 0.00 0.00 2.32
7057 8672 5.352569 CAGTAGATGAACTTCTCGCCAATTT 59.647 40.000 0.00 0.00 0.00 1.82
7058 8673 5.940470 AGTAGATGAACTTCTCGCCAATTTT 59.060 36.000 0.00 0.00 0.00 1.82
7059 8674 5.712152 AGATGAACTTCTCGCCAATTTTT 57.288 34.783 0.00 0.00 0.00 1.94
7240 10577 6.250819 CAGTACCAAAATTATTCGAGCACAG 58.749 40.000 0.00 0.00 0.00 3.66
7260 10597 6.919115 GCACAGGATAGCTAGAAACTTAGTAC 59.081 42.308 0.00 0.00 0.00 2.73
7323 10660 3.758554 ACATAGAAACCAAGTCATGTGCC 59.241 43.478 0.00 0.00 0.00 5.01
7324 10661 2.363306 AGAAACCAAGTCATGTGCCA 57.637 45.000 0.00 0.00 0.00 4.92
7325 10662 2.233271 AGAAACCAAGTCATGTGCCAG 58.767 47.619 0.00 0.00 0.00 4.85
7326 10663 2.158623 AGAAACCAAGTCATGTGCCAGA 60.159 45.455 0.00 0.00 0.00 3.86
7327 10664 2.363306 AACCAAGTCATGTGCCAGAA 57.637 45.000 0.00 0.00 0.00 3.02
7328 10665 1.901591 ACCAAGTCATGTGCCAGAAG 58.098 50.000 0.00 0.00 0.00 2.85
7329 10666 1.171308 CCAAGTCATGTGCCAGAAGG 58.829 55.000 0.00 0.00 38.23 3.46
7487 11183 5.782893 TTGGACACCTAAATGTTTTCCTG 57.217 39.130 0.00 0.00 31.24 3.86
7546 11245 7.482169 ACACTCTGTCCTGTTCTGATAATTA 57.518 36.000 0.00 0.00 0.00 1.40
7600 11299 0.875059 GTACCTGCCTGAACAGCAAC 59.125 55.000 0.00 0.00 40.35 4.17
7653 11352 8.210265 CCTTATGGTACGGTTATTACCCTAAAA 58.790 37.037 0.00 0.00 41.75 1.52
7738 11438 3.248495 GGTAGAACACCTAGCAGAACC 57.752 52.381 0.00 0.00 44.79 3.62
7755 11455 4.012374 AGAACCATGCAGTTGGATTACTG 58.988 43.478 13.35 0.00 46.55 2.74
7884 11587 8.429641 TGTAACATGGGAGAGATTTAAGATACC 58.570 37.037 0.00 0.00 0.00 2.73
8090 11947 2.895404 ACACTTACGGCTTACCTTCTGA 59.105 45.455 0.00 0.00 0.00 3.27
8217 12074 8.458843 AGAACGCCCATATATTTATTATTGTGC 58.541 33.333 0.00 0.00 0.00 4.57
8324 12390 7.066781 ACTTCTGGGACATTCTTTTTCCTTTA 58.933 34.615 0.00 0.00 38.20 1.85
8545 12759 8.978874 ATTCCAGTATCACATAAGTAAATGCA 57.021 30.769 0.00 0.00 0.00 3.96
8600 12814 0.107945 GCTGGTTCTCGCCTCATCTT 60.108 55.000 0.00 0.00 0.00 2.40
8661 12875 2.830370 GGCTCGCCCCCAATTCTG 60.830 66.667 0.00 0.00 0.00 3.02
8666 12880 1.823899 CGCCCCCAATTCTGCCTAC 60.824 63.158 0.00 0.00 0.00 3.18
8669 12883 1.607612 CCCCAATTCTGCCTACGGT 59.392 57.895 0.00 0.00 0.00 4.83
8740 12954 1.419381 TCCTGCACCACTGTTGTAGA 58.581 50.000 0.00 0.00 0.00 2.59
8741 12955 1.977854 TCCTGCACCACTGTTGTAGAT 59.022 47.619 0.00 0.00 0.00 1.98
8742 12956 2.028112 TCCTGCACCACTGTTGTAGATC 60.028 50.000 0.00 0.00 0.00 2.75
8743 12957 2.289631 CCTGCACCACTGTTGTAGATCA 60.290 50.000 0.00 0.00 0.00 2.92
8766 12980 1.003476 CCCCCATTTGCTTTGGTGC 60.003 57.895 0.00 0.00 31.99 5.01
8960 13177 4.323477 GTGCAGCCGTGGGTGGTA 62.323 66.667 18.86 0.00 43.11 3.25
8983 13200 0.042881 GAGGTCCCCCTTGTCCTACT 59.957 60.000 0.00 0.00 42.86 2.57
8992 13209 3.456277 CCCCTTGTCCTACTATCAGCTTT 59.544 47.826 0.00 0.00 0.00 3.51
9038 13255 1.160137 GAGCTTCATGGCTTCGTTGT 58.840 50.000 0.00 0.00 43.20 3.32
9062 13279 1.442526 GCCATGGATGCGACTTCCTG 61.443 60.000 18.40 7.94 34.17 3.86
9094 13311 2.359478 CGTGGCTTGGGGGTGTAC 60.359 66.667 0.00 0.00 0.00 2.90
9096 13313 2.850130 TGGCTTGGGGGTGTACGT 60.850 61.111 0.00 0.00 0.00 3.57
9110 13327 3.306502 GGTGTACGTCTTTCCCATTCTGA 60.307 47.826 0.00 0.00 0.00 3.27
9131 13348 2.624838 ACAGGCTTCATCCTTGTTGTTG 59.375 45.455 0.00 0.00 33.25 3.33
9132 13349 2.624838 CAGGCTTCATCCTTGTTGTTGT 59.375 45.455 0.00 0.00 33.25 3.32
9133 13350 3.068590 CAGGCTTCATCCTTGTTGTTGTT 59.931 43.478 0.00 0.00 33.25 2.83
9144 13361 4.082245 CCTTGTTGTTGTTCTTGTGGTTCT 60.082 41.667 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.482627 GTTAAATGGTCATGTGATGGTTAAAAA 57.517 29.630 0.00 0.00 0.00 1.94
20 21 8.642432 TGTTAAATGGTCATGTGATGGTTAAAA 58.358 29.630 0.00 0.00 0.00 1.52
21 22 8.183104 TGTTAAATGGTCATGTGATGGTTAAA 57.817 30.769 0.00 0.00 0.00 1.52
22 23 7.767250 TGTTAAATGGTCATGTGATGGTTAA 57.233 32.000 0.00 0.00 0.00 2.01
23 24 7.231519 TGTTGTTAAATGGTCATGTGATGGTTA 59.768 33.333 0.00 0.00 0.00 2.85
24 25 6.041409 TGTTGTTAAATGGTCATGTGATGGTT 59.959 34.615 0.00 0.00 0.00 3.67
25 26 5.538053 TGTTGTTAAATGGTCATGTGATGGT 59.462 36.000 0.00 0.00 0.00 3.55
26 27 6.023357 TGTTGTTAAATGGTCATGTGATGG 57.977 37.500 0.00 0.00 0.00 3.51
27 28 6.922407 TGTTGTTGTTAAATGGTCATGTGATG 59.078 34.615 0.00 0.00 0.00 3.07
28 29 7.048629 TGTTGTTGTTAAATGGTCATGTGAT 57.951 32.000 0.00 0.00 0.00 3.06
29 30 6.456795 TGTTGTTGTTAAATGGTCATGTGA 57.543 33.333 0.00 0.00 0.00 3.58
30 31 6.346758 GCATGTTGTTGTTAAATGGTCATGTG 60.347 38.462 0.00 0.00 34.56 3.21
31 32 5.695816 GCATGTTGTTGTTAAATGGTCATGT 59.304 36.000 0.00 0.00 34.56 3.21
32 33 5.695363 TGCATGTTGTTGTTAAATGGTCATG 59.305 36.000 0.00 0.00 34.99 3.07
33 34 5.851720 TGCATGTTGTTGTTAAATGGTCAT 58.148 33.333 0.00 0.00 0.00 3.06
34 35 5.268118 TGCATGTTGTTGTTAAATGGTCA 57.732 34.783 0.00 0.00 0.00 4.02
35 36 6.595772 TTTGCATGTTGTTGTTAAATGGTC 57.404 33.333 0.00 0.00 0.00 4.02
36 37 6.820656 TCTTTTGCATGTTGTTGTTAAATGGT 59.179 30.769 0.00 0.00 0.00 3.55
37 38 7.244166 TCTTTTGCATGTTGTTGTTAAATGG 57.756 32.000 0.00 0.00 0.00 3.16
43 44 9.719279 CAAATTTATCTTTTGCATGTTGTTGTT 57.281 25.926 0.00 0.00 0.00 2.83
44 45 8.891720 ACAAATTTATCTTTTGCATGTTGTTGT 58.108 25.926 0.00 0.00 37.54 3.32
45 46 9.160576 CACAAATTTATCTTTTGCATGTTGTTG 57.839 29.630 0.00 0.00 37.54 3.33
46 47 8.344098 CCACAAATTTATCTTTTGCATGTTGTT 58.656 29.630 0.00 0.00 37.54 2.83
47 48 7.498570 ACCACAAATTTATCTTTTGCATGTTGT 59.501 29.630 0.00 0.00 37.54 3.32
48 49 7.863666 ACCACAAATTTATCTTTTGCATGTTG 58.136 30.769 0.00 0.00 37.54 3.33
49 50 8.449251 AACCACAAATTTATCTTTTGCATGTT 57.551 26.923 0.00 0.00 37.54 2.71
50 51 9.206870 CTAACCACAAATTTATCTTTTGCATGT 57.793 29.630 0.00 0.00 37.54 3.21
51 52 9.206870 ACTAACCACAAATTTATCTTTTGCATG 57.793 29.630 0.00 0.00 37.54 4.06
62 63 9.646427 GCCATCAATTTACTAACCACAAATTTA 57.354 29.630 0.00 0.00 31.27 1.40
63 64 8.153550 TGCCATCAATTTACTAACCACAAATTT 58.846 29.630 0.00 0.00 31.27 1.82
64 65 7.675062 TGCCATCAATTTACTAACCACAAATT 58.325 30.769 0.00 0.00 33.31 1.82
65 66 7.238486 TGCCATCAATTTACTAACCACAAAT 57.762 32.000 0.00 0.00 0.00 2.32
66 67 6.656632 TGCCATCAATTTACTAACCACAAA 57.343 33.333 0.00 0.00 0.00 2.83
67 68 6.656632 TTGCCATCAATTTACTAACCACAA 57.343 33.333 0.00 0.00 0.00 3.33
68 69 6.656632 TTTGCCATCAATTTACTAACCACA 57.343 33.333 0.00 0.00 31.33 4.17
69 70 7.375053 TCTTTTGCCATCAATTTACTAACCAC 58.625 34.615 0.00 0.00 31.33 4.16
70 71 7.531857 TCTTTTGCCATCAATTTACTAACCA 57.468 32.000 0.00 0.00 31.33 3.67
82 83 9.874205 CCTTTTAAGATTTATCTTTTGCCATCA 57.126 29.630 10.03 0.00 44.28 3.07
83 84 9.317936 CCCTTTTAAGATTTATCTTTTGCCATC 57.682 33.333 10.03 0.00 44.28 3.51
84 85 8.267183 CCCCTTTTAAGATTTATCTTTTGCCAT 58.733 33.333 10.03 0.00 44.28 4.40
85 86 7.456269 TCCCCTTTTAAGATTTATCTTTTGCCA 59.544 33.333 10.03 0.00 44.28 4.92
86 87 7.847096 TCCCCTTTTAAGATTTATCTTTTGCC 58.153 34.615 10.03 0.00 44.28 4.52
87 88 8.749354 TCTCCCCTTTTAAGATTTATCTTTTGC 58.251 33.333 10.03 0.00 44.28 3.68
89 90 9.480861 CCTCTCCCCTTTTAAGATTTATCTTTT 57.519 33.333 10.03 0.00 44.28 2.27
90 91 8.846804 TCCTCTCCCCTTTTAAGATTTATCTTT 58.153 33.333 10.03 0.00 44.28 2.52
92 93 8.407313 TTCCTCTCCCCTTTTAAGATTTATCT 57.593 34.615 0.00 0.00 39.22 1.98
93 94 8.495260 TCTTCCTCTCCCCTTTTAAGATTTATC 58.505 37.037 0.00 0.00 0.00 1.75
94 95 8.407313 TCTTCCTCTCCCCTTTTAAGATTTAT 57.593 34.615 0.00 0.00 0.00 1.40
95 96 7.824365 TCTTCCTCTCCCCTTTTAAGATTTA 57.176 36.000 0.00 0.00 0.00 1.40
96 97 6.720217 TCTTCCTCTCCCCTTTTAAGATTT 57.280 37.500 0.00 0.00 0.00 2.17
97 98 6.275855 ACTTCTTCCTCTCCCCTTTTAAGATT 59.724 38.462 0.00 0.00 0.00 2.40
98 99 5.793237 ACTTCTTCCTCTCCCCTTTTAAGAT 59.207 40.000 0.00 0.00 0.00 2.40
99 100 5.163390 ACTTCTTCCTCTCCCCTTTTAAGA 58.837 41.667 0.00 0.00 0.00 2.10
100 101 5.506730 ACTTCTTCCTCTCCCCTTTTAAG 57.493 43.478 0.00 0.00 0.00 1.85
101 102 5.924769 AACTTCTTCCTCTCCCCTTTTAA 57.075 39.130 0.00 0.00 0.00 1.52
102 103 6.089502 ACTAACTTCTTCCTCTCCCCTTTTA 58.910 40.000 0.00 0.00 0.00 1.52
103 104 4.914581 ACTAACTTCTTCCTCTCCCCTTTT 59.085 41.667 0.00 0.00 0.00 2.27
104 105 4.504382 ACTAACTTCTTCCTCTCCCCTTT 58.496 43.478 0.00 0.00 0.00 3.11
105 106 4.149090 ACTAACTTCTTCCTCTCCCCTT 57.851 45.455 0.00 0.00 0.00 3.95
106 107 3.856747 ACTAACTTCTTCCTCTCCCCT 57.143 47.619 0.00 0.00 0.00 4.79
107 108 3.962063 CCTACTAACTTCTTCCTCTCCCC 59.038 52.174 0.00 0.00 0.00 4.81
108 109 3.962063 CCCTACTAACTTCTTCCTCTCCC 59.038 52.174 0.00 0.00 0.00 4.30
109 110 3.385433 GCCCTACTAACTTCTTCCTCTCC 59.615 52.174 0.00 0.00 0.00 3.71
110 111 4.098807 CAGCCCTACTAACTTCTTCCTCTC 59.901 50.000 0.00 0.00 0.00 3.20
111 112 4.027437 CAGCCCTACTAACTTCTTCCTCT 58.973 47.826 0.00 0.00 0.00 3.69
112 113 4.024670 TCAGCCCTACTAACTTCTTCCTC 58.975 47.826 0.00 0.00 0.00 3.71
113 114 3.770388 GTCAGCCCTACTAACTTCTTCCT 59.230 47.826 0.00 0.00 0.00 3.36
114 115 3.770388 AGTCAGCCCTACTAACTTCTTCC 59.230 47.826 0.00 0.00 0.00 3.46
115 116 4.382147 CCAGTCAGCCCTACTAACTTCTTC 60.382 50.000 0.00 0.00 0.00 2.87
116 117 3.515901 CCAGTCAGCCCTACTAACTTCTT 59.484 47.826 0.00 0.00 0.00 2.52
117 118 3.100671 CCAGTCAGCCCTACTAACTTCT 58.899 50.000 0.00 0.00 0.00 2.85
118 119 2.168728 CCCAGTCAGCCCTACTAACTTC 59.831 54.545 0.00 0.00 0.00 3.01
119 120 2.188817 CCCAGTCAGCCCTACTAACTT 58.811 52.381 0.00 0.00 0.00 2.66
120 121 1.867363 CCCAGTCAGCCCTACTAACT 58.133 55.000 0.00 0.00 0.00 2.24
121 122 0.178301 GCCCAGTCAGCCCTACTAAC 59.822 60.000 0.00 0.00 0.00 2.34
122 123 0.252513 TGCCCAGTCAGCCCTACTAA 60.253 55.000 0.00 0.00 0.00 2.24
123 124 0.252513 TTGCCCAGTCAGCCCTACTA 60.253 55.000 0.00 0.00 0.00 1.82
124 125 1.538876 TTGCCCAGTCAGCCCTACT 60.539 57.895 0.00 0.00 0.00 2.57
125 126 1.078143 CTTGCCCAGTCAGCCCTAC 60.078 63.158 0.00 0.00 0.00 3.18
126 127 2.300967 CCTTGCCCAGTCAGCCCTA 61.301 63.158 0.00 0.00 0.00 3.53
127 128 3.655211 CCTTGCCCAGTCAGCCCT 61.655 66.667 0.00 0.00 0.00 5.19
128 129 2.713531 TTTCCTTGCCCAGTCAGCCC 62.714 60.000 0.00 0.00 0.00 5.19
129 130 1.228552 TTTCCTTGCCCAGTCAGCC 60.229 57.895 0.00 0.00 0.00 4.85
130 131 0.250901 TCTTTCCTTGCCCAGTCAGC 60.251 55.000 0.00 0.00 0.00 4.26
131 132 2.276732 TTCTTTCCTTGCCCAGTCAG 57.723 50.000 0.00 0.00 0.00 3.51
132 133 2.174639 TCTTTCTTTCCTTGCCCAGTCA 59.825 45.455 0.00 0.00 0.00 3.41
133 134 2.816672 CTCTTTCTTTCCTTGCCCAGTC 59.183 50.000 0.00 0.00 0.00 3.51
134 135 2.443255 TCTCTTTCTTTCCTTGCCCAGT 59.557 45.455 0.00 0.00 0.00 4.00
135 136 3.146104 TCTCTTTCTTTCCTTGCCCAG 57.854 47.619 0.00 0.00 0.00 4.45
136 137 3.593442 TTCTCTTTCTTTCCTTGCCCA 57.407 42.857 0.00 0.00 0.00 5.36
137 138 4.262207 CCTTTTCTCTTTCTTTCCTTGCCC 60.262 45.833 0.00 0.00 0.00 5.36
138 139 4.262207 CCCTTTTCTCTTTCTTTCCTTGCC 60.262 45.833 0.00 0.00 0.00 4.52
139 140 4.262207 CCCCTTTTCTCTTTCTTTCCTTGC 60.262 45.833 0.00 0.00 0.00 4.01
140 141 4.281941 CCCCCTTTTCTCTTTCTTTCCTTG 59.718 45.833 0.00 0.00 0.00 3.61
141 142 4.170053 TCCCCCTTTTCTCTTTCTTTCCTT 59.830 41.667 0.00 0.00 0.00 3.36
142 143 3.727391 TCCCCCTTTTCTCTTTCTTTCCT 59.273 43.478 0.00 0.00 0.00 3.36
143 144 4.114015 TCCCCCTTTTCTCTTTCTTTCC 57.886 45.455 0.00 0.00 0.00 3.13
144 145 5.575157 AGATCCCCCTTTTCTCTTTCTTTC 58.425 41.667 0.00 0.00 0.00 2.62
145 146 5.607168 AGATCCCCCTTTTCTCTTTCTTT 57.393 39.130 0.00 0.00 0.00 2.52
146 147 6.917208 ATAGATCCCCCTTTTCTCTTTCTT 57.083 37.500 0.00 0.00 0.00 2.52
147 148 6.917208 AATAGATCCCCCTTTTCTCTTTCT 57.083 37.500 0.00 0.00 0.00 2.52
181 182 9.861369 GCAAAACGTTTTTAATATACGATGAAC 57.139 29.630 23.14 0.00 38.56 3.18
182 183 9.608617 TGCAAAACGTTTTTAATATACGATGAA 57.391 25.926 23.14 0.53 38.56 2.57
183 184 9.608617 TTGCAAAACGTTTTTAATATACGATGA 57.391 25.926 23.14 0.00 38.56 2.92
193 194 9.731819 TCACTGTATATTGCAAAACGTTTTTAA 57.268 25.926 23.14 19.83 0.00 1.52
194 195 9.731819 TTCACTGTATATTGCAAAACGTTTTTA 57.268 25.926 23.14 13.53 0.00 1.52
195 196 8.536407 GTTCACTGTATATTGCAAAACGTTTTT 58.464 29.630 23.14 11.76 0.00 1.94
196 197 7.918562 AGTTCACTGTATATTGCAAAACGTTTT 59.081 29.630 20.26 20.26 0.00 2.43
197 198 7.422399 AGTTCACTGTATATTGCAAAACGTTT 58.578 30.769 7.96 7.96 0.00 3.60
198 199 6.966021 AGTTCACTGTATATTGCAAAACGTT 58.034 32.000 1.71 0.00 0.00 3.99
199 200 6.554334 AGTTCACTGTATATTGCAAAACGT 57.446 33.333 1.71 2.94 0.00 3.99
200 201 7.851822 AAAGTTCACTGTATATTGCAAAACG 57.148 32.000 1.71 2.36 0.00 3.60
273 275 9.426837 TGTACATGTAAAAGGTTCACTGTATAC 57.573 33.333 7.25 0.00 0.00 1.47
278 280 6.260050 AGTGTGTACATGTAAAAGGTTCACTG 59.740 38.462 7.25 0.00 40.33 3.66
279 281 6.260050 CAGTGTGTACATGTAAAAGGTTCACT 59.740 38.462 7.25 8.59 40.33 3.41
286 288 8.142994 AGAACTTCAGTGTGTACATGTAAAAG 57.857 34.615 7.25 3.97 0.00 2.27
323 325 9.405587 CGATTTATACAACAAAAATGTTCACCT 57.594 29.630 0.00 0.00 32.27 4.00
389 391 9.262358 GTTCAGTGTGTATTAGAAAAGTTCTCT 57.738 33.333 0.00 0.00 41.14 3.10
430 432 9.630098 GATGTACACAACAAAAATGATCATCTT 57.370 29.630 9.06 0.00 42.70 2.40
431 433 7.964559 CGATGTACACAACAAAAATGATCATCT 59.035 33.333 9.06 0.00 42.70 2.90
433 435 7.815641 TCGATGTACACAACAAAAATGATCAT 58.184 30.769 1.18 1.18 42.70 2.45
435 437 7.589587 TGTTCGATGTACACAACAAAAATGATC 59.410 33.333 12.31 0.00 42.70 2.92
477 479 8.071368 TGTTCGATGTATACAACAAAAAGTTCC 58.929 33.333 10.14 0.00 42.70 3.62
524 543 5.531287 AGTGTACATCAAGAAAAGTTCACCC 59.469 40.000 0.00 0.00 34.22 4.61
525 544 6.260050 TCAGTGTACATCAAGAAAAGTTCACC 59.740 38.462 0.00 0.00 34.22 4.02
527 546 7.857734 TTCAGTGTACATCAAGAAAAGTTCA 57.142 32.000 0.00 0.00 0.00 3.18
528 547 9.736023 AAATTCAGTGTACATCAAGAAAAGTTC 57.264 29.630 0.00 0.00 0.00 3.01
559 578 7.829725 AGAAAATTGCTCAGCACATGTTTATA 58.170 30.769 0.00 0.00 38.71 0.98
560 579 6.694447 AGAAAATTGCTCAGCACATGTTTAT 58.306 32.000 0.00 0.00 38.71 1.40
561 580 6.088016 AGAAAATTGCTCAGCACATGTTTA 57.912 33.333 0.00 0.00 38.71 2.01
564 583 5.710513 TTAGAAAATTGCTCAGCACATGT 57.289 34.783 0.00 0.00 38.71 3.21
565 584 7.591006 ATTTTAGAAAATTGCTCAGCACATG 57.409 32.000 0.00 0.00 38.71 3.21
618 637 8.652290 CCTGGTAAATTTTAGGAGCTAGATACT 58.348 37.037 0.00 0.00 31.91 2.12
619 638 7.388224 GCCTGGTAAATTTTAGGAGCTAGATAC 59.612 40.741 15.86 0.00 31.91 2.24
620 639 7.292591 AGCCTGGTAAATTTTAGGAGCTAGATA 59.707 37.037 15.86 0.00 31.91 1.98
621 640 6.101881 AGCCTGGTAAATTTTAGGAGCTAGAT 59.898 38.462 15.86 0.00 31.91 1.98
622 641 5.428783 AGCCTGGTAAATTTTAGGAGCTAGA 59.571 40.000 15.86 0.00 31.91 2.43
623 642 5.529060 CAGCCTGGTAAATTTTAGGAGCTAG 59.471 44.000 15.86 0.00 31.91 3.42
624 643 5.437060 CAGCCTGGTAAATTTTAGGAGCTA 58.563 41.667 15.86 0.00 31.91 3.32
625 644 4.273318 CAGCCTGGTAAATTTTAGGAGCT 58.727 43.478 15.86 8.71 31.91 4.09
626 645 3.181486 GCAGCCTGGTAAATTTTAGGAGC 60.181 47.826 15.86 14.23 31.91 4.70
627 646 4.273318 AGCAGCCTGGTAAATTTTAGGAG 58.727 43.478 15.86 10.15 31.91 3.69
628 647 4.316025 AGCAGCCTGGTAAATTTTAGGA 57.684 40.909 15.86 0.00 31.91 2.94
629 648 5.405935 AAAGCAGCCTGGTAAATTTTAGG 57.594 39.130 0.00 3.86 0.00 2.69
630 649 6.691508 AGAAAAGCAGCCTGGTAAATTTTAG 58.308 36.000 0.00 0.00 0.00 1.85
631 650 6.664428 AGAAAAGCAGCCTGGTAAATTTTA 57.336 33.333 0.00 0.00 0.00 1.52
632 651 5.551305 AGAAAAGCAGCCTGGTAAATTTT 57.449 34.783 0.00 0.00 0.00 1.82
633 652 5.299949 CAAGAAAAGCAGCCTGGTAAATTT 58.700 37.500 0.00 0.00 0.00 1.82
640 659 0.600057 GTCCAAGAAAAGCAGCCTGG 59.400 55.000 0.00 0.00 0.00 4.45
713 732 2.037687 CCCAATGAGCTGGCCCAA 59.962 61.111 0.00 0.00 34.88 4.12
714 733 4.764771 GCCCAATGAGCTGGCCCA 62.765 66.667 0.00 0.00 39.30 5.36
719 738 3.944250 AACCCGGCCCAATGAGCTG 62.944 63.158 0.00 0.00 36.32 4.24
720 739 3.661648 AACCCGGCCCAATGAGCT 61.662 61.111 0.00 0.00 0.00 4.09
721 740 3.451894 CAACCCGGCCCAATGAGC 61.452 66.667 0.00 0.00 0.00 4.26
722 741 3.451894 GCAACCCGGCCCAATGAG 61.452 66.667 0.00 0.00 0.00 2.90
738 757 3.866582 CCCGATCTGGACCTGGGC 61.867 72.222 0.00 0.00 42.00 5.36
788 807 0.605589 AGTGCTGGAGAAGAGAACCG 59.394 55.000 0.00 0.00 0.00 4.44
867 886 4.194720 CGGCGAGAGGAAGACGGG 62.195 72.222 0.00 0.00 34.81 5.28
933 952 0.603707 TTGAAGTTCAGGAGCCGCAG 60.604 55.000 5.56 0.00 0.00 5.18
934 953 0.603707 CTTGAAGTTCAGGAGCCGCA 60.604 55.000 9.29 0.00 0.00 5.69
947 966 2.126965 GCACGCTGCTGCTTGAAG 60.127 61.111 23.33 6.11 40.37 3.02
1044 1063 1.887198 AGACTATACCTCGCCATTCGG 59.113 52.381 0.00 0.00 39.05 4.30
1047 1066 6.946583 TGAAGTATAGACTATACCTCGCCATT 59.053 38.462 23.32 12.67 41.49 3.16
1061 1080 7.360438 GGGCATGAATCGAATTGAAGTATAGAC 60.360 40.741 0.00 0.00 0.00 2.59
1064 1083 5.705441 GGGGCATGAATCGAATTGAAGTATA 59.295 40.000 0.00 0.00 0.00 1.47
1065 1084 4.520492 GGGGCATGAATCGAATTGAAGTAT 59.480 41.667 0.00 0.00 0.00 2.12
1066 1085 3.882888 GGGGCATGAATCGAATTGAAGTA 59.117 43.478 0.00 0.00 0.00 2.24
1067 1086 2.689983 GGGGCATGAATCGAATTGAAGT 59.310 45.455 0.00 0.00 0.00 3.01
1068 1087 2.035066 GGGGGCATGAATCGAATTGAAG 59.965 50.000 0.00 0.00 0.00 3.02
1069 1088 2.031120 GGGGGCATGAATCGAATTGAA 58.969 47.619 0.00 0.00 0.00 2.69
1070 1089 1.215173 AGGGGGCATGAATCGAATTGA 59.785 47.619 0.00 0.00 0.00 2.57
1071 1090 1.696063 AGGGGGCATGAATCGAATTG 58.304 50.000 0.00 0.00 0.00 2.32
1072 1091 2.459555 AAGGGGGCATGAATCGAATT 57.540 45.000 0.00 0.00 0.00 2.17
1073 1092 2.711009 TCTAAGGGGGCATGAATCGAAT 59.289 45.455 0.00 0.00 0.00 3.34
1074 1093 2.123589 TCTAAGGGGGCATGAATCGAA 58.876 47.619 0.00 0.00 0.00 3.71
1075 1094 1.801242 TCTAAGGGGGCATGAATCGA 58.199 50.000 0.00 0.00 0.00 3.59
1076 1095 2.304180 AGATCTAAGGGGGCATGAATCG 59.696 50.000 0.00 0.00 0.00 3.34
1077 1096 3.328931 TGAGATCTAAGGGGGCATGAATC 59.671 47.826 0.00 0.00 0.00 2.52
1078 1097 3.330198 TGAGATCTAAGGGGGCATGAAT 58.670 45.455 0.00 0.00 0.00 2.57
1107 1127 3.255642 GGAGCTGTTGCAGGATTTGTAAA 59.744 43.478 0.00 0.00 42.74 2.01
1115 1135 1.372683 GACAGGAGCTGTTGCAGGA 59.627 57.895 0.00 0.00 45.44 3.86
1145 1165 3.923017 AAATCAACAGGTTAGCACAGC 57.077 42.857 0.00 0.00 0.00 4.40
1148 1168 5.500290 CGACGATAAATCAACAGGTTAGCAC 60.500 44.000 0.00 0.00 0.00 4.40
1168 1188 0.179187 AGCGACATCAGAAGACGACG 60.179 55.000 1.68 0.00 0.00 5.12
1169 1189 1.131504 AGAGCGACATCAGAAGACGAC 59.868 52.381 1.68 0.00 0.00 4.34
1170 1190 1.454201 AGAGCGACATCAGAAGACGA 58.546 50.000 1.68 0.00 0.00 4.20
1171 1191 2.286713 CCTAGAGCGACATCAGAAGACG 60.287 54.545 0.00 0.00 0.00 4.18
1172 1192 2.542824 GCCTAGAGCGACATCAGAAGAC 60.543 54.545 0.00 0.00 0.00 3.01
1185 1205 1.327764 GCATACGTTGTTGCCTAGAGC 59.672 52.381 0.00 0.00 44.14 4.09
1210 1230 2.067013 GGTTGCTCCGTAGAGTTTGTC 58.933 52.381 0.00 0.00 42.59 3.18
1213 1233 1.275573 GAGGGTTGCTCCGTAGAGTTT 59.724 52.381 0.00 0.00 42.59 2.66
1232 1252 2.659063 CCATGGTGGCAGTCTCGGA 61.659 63.158 2.57 0.00 0.00 4.55
1233 1253 1.976132 ATCCATGGTGGCAGTCTCGG 61.976 60.000 12.58 0.00 37.47 4.63
1234 1254 0.752658 TATCCATGGTGGCAGTCTCG 59.247 55.000 12.58 0.00 37.47 4.04
1235 1255 1.542108 GCTATCCATGGTGGCAGTCTC 60.542 57.143 12.58 0.00 37.47 3.36
1236 1256 0.471617 GCTATCCATGGTGGCAGTCT 59.528 55.000 12.58 0.00 37.47 3.24
1237 1257 0.471617 AGCTATCCATGGTGGCAGTC 59.528 55.000 19.44 7.65 37.47 3.51
1238 1258 0.182061 CAGCTATCCATGGTGGCAGT 59.818 55.000 19.44 3.19 37.47 4.40
1240 1260 1.152902 GCAGCTATCCATGGTGGCA 60.153 57.895 19.44 0.00 37.47 4.92
1241 1261 1.152902 TGCAGCTATCCATGGTGGC 60.153 57.895 12.58 12.59 37.47 5.01
1258 1278 2.697761 GCTGGCAGCCACATCAGTG 61.698 63.158 28.87 0.00 45.47 3.66
1261 1281 1.751544 GATGCTGGCAGCCACATCA 60.752 57.895 34.58 22.19 41.51 3.07
1306 1326 4.574013 CCCACAGCTTATGAAAGAGACATC 59.426 45.833 0.00 0.00 34.37 3.06
1311 1331 4.946157 ACATTCCCACAGCTTATGAAAGAG 59.054 41.667 0.00 0.00 34.37 2.85
1349 1369 4.574828 CCGAATCCCTACAAAAGTACATGG 59.425 45.833 0.00 0.00 0.00 3.66
1351 1371 5.183228 CACCGAATCCCTACAAAAGTACAT 58.817 41.667 0.00 0.00 0.00 2.29
1352 1372 4.563993 CCACCGAATCCCTACAAAAGTACA 60.564 45.833 0.00 0.00 0.00 2.90
1368 2804 0.468226 AGCAACTCAACTCCACCGAA 59.532 50.000 0.00 0.00 0.00 4.30
1371 2807 3.055819 TCTCATAGCAACTCAACTCCACC 60.056 47.826 0.00 0.00 0.00 4.61
1372 2808 4.180057 CTCTCATAGCAACTCAACTCCAC 58.820 47.826 0.00 0.00 0.00 4.02
1378 2814 4.194640 GCAATCCTCTCATAGCAACTCAA 58.805 43.478 0.00 0.00 0.00 3.02
1379 2815 3.739209 CGCAATCCTCTCATAGCAACTCA 60.739 47.826 0.00 0.00 0.00 3.41
1408 2844 2.143419 ACTGATCCCCGATGCTCCC 61.143 63.158 0.00 0.00 0.00 4.30
1447 2883 4.521062 CTTCCGGAGCAGGAGCCG 62.521 72.222 3.34 0.00 46.80 5.52
1460 2896 3.429960 GCAAATGGGAGCATTCTTCTTCC 60.430 47.826 0.00 0.00 0.00 3.46
1473 2909 4.590647 TCAAACCAAACATAGCAAATGGGA 59.409 37.500 4.34 0.00 35.44 4.37
1477 2913 4.040217 TGGCTCAAACCAAACATAGCAAAT 59.960 37.500 0.00 0.00 36.55 2.32
1480 2916 2.591923 TGGCTCAAACCAAACATAGCA 58.408 42.857 0.00 0.00 36.55 3.49
1542 2978 5.682862 GCATCCGATAATGTAAAAGCAGTTG 59.317 40.000 0.00 0.00 0.00 3.16
1557 2994 4.577834 TGTCGATAACAAGCATCCGATA 57.422 40.909 0.00 0.00 34.03 2.92
1567 3004 5.067273 ACCATCCTTGTTTGTCGATAACAA 58.933 37.500 20.56 20.56 46.11 2.83
1568 3005 4.647611 ACCATCCTTGTTTGTCGATAACA 58.352 39.130 10.82 10.82 35.59 2.41
1569 3006 4.094442 GGACCATCCTTGTTTGTCGATAAC 59.906 45.833 0.00 0.20 32.53 1.89
1570 3007 4.258543 GGACCATCCTTGTTTGTCGATAA 58.741 43.478 0.00 0.00 32.53 1.75
1571 3008 3.370103 GGGACCATCCTTGTTTGTCGATA 60.370 47.826 0.00 0.00 36.57 2.92
1572 3009 2.618045 GGGACCATCCTTGTTTGTCGAT 60.618 50.000 0.00 0.00 36.57 3.59
1573 3010 1.271163 GGGACCATCCTTGTTTGTCGA 60.271 52.381 0.00 0.00 36.57 4.20
1574 3011 1.165270 GGGACCATCCTTGTTTGTCG 58.835 55.000 0.00 0.00 36.57 4.35
1575 3012 1.165270 CGGGACCATCCTTGTTTGTC 58.835 55.000 0.00 0.00 36.57 3.18
1576 3013 0.251165 CCGGGACCATCCTTGTTTGT 60.251 55.000 0.00 0.00 36.57 2.83
1577 3014 0.251165 ACCGGGACCATCCTTGTTTG 60.251 55.000 6.32 0.00 36.57 2.93
1578 3015 0.481128 AACCGGGACCATCCTTGTTT 59.519 50.000 6.32 0.00 36.57 2.83
1579 3016 0.481128 AAACCGGGACCATCCTTGTT 59.519 50.000 6.32 0.00 36.57 2.83
1580 3017 0.251165 CAAACCGGGACCATCCTTGT 60.251 55.000 6.32 0.00 36.57 3.16
1581 3018 0.037590 TCAAACCGGGACCATCCTTG 59.962 55.000 6.32 0.00 36.57 3.61
1582 3019 0.328258 CTCAAACCGGGACCATCCTT 59.672 55.000 6.32 0.00 36.57 3.36
1583 3020 0.840722 ACTCAAACCGGGACCATCCT 60.841 55.000 6.32 0.00 36.57 3.24
1584 3021 0.037734 AACTCAAACCGGGACCATCC 59.962 55.000 6.32 0.00 35.23 3.51
1585 3022 2.289819 TGTAACTCAAACCGGGACCATC 60.290 50.000 6.32 0.00 0.00 3.51
1586 3023 1.700739 TGTAACTCAAACCGGGACCAT 59.299 47.619 6.32 0.00 0.00 3.55
1587 3024 1.129917 TGTAACTCAAACCGGGACCA 58.870 50.000 6.32 0.00 0.00 4.02
1588 3025 1.516161 GTGTAACTCAAACCGGGACC 58.484 55.000 6.32 0.00 0.00 4.46
1642 3079 1.967066 AGAGAAGAGAGGTGTGTGGTG 59.033 52.381 0.00 0.00 0.00 4.17
1701 3140 4.876107 GCACAAAGCTACTCAGGCTAAATA 59.124 41.667 0.00 0.00 39.30 1.40
1751 3190 6.316140 TGAACCATCCGAAACTAATCTGATTG 59.684 38.462 13.01 5.85 0.00 2.67
1840 3279 4.988540 AGAAAAGGCCGCTTTGAAAAATAC 59.011 37.500 10.24 0.00 0.00 1.89
1871 3310 5.066893 TCGTACAACTGATTATTACCGCTCT 59.933 40.000 0.00 0.00 0.00 4.09
1874 3313 4.799949 TGTCGTACAACTGATTATTACCGC 59.200 41.667 0.00 0.00 0.00 5.68
1938 3377 3.515602 AAGAAGCTGGATTTCTGGTGT 57.484 42.857 0.00 0.00 35.20 4.16
2006 3445 9.209175 CTTACTTAAACTGCTAGACAAGTGATT 57.791 33.333 0.00 0.00 0.00 2.57
2027 3466 5.221722 CCTGTATATGGTGATGTGGCTTACT 60.222 44.000 0.00 0.00 0.00 2.24
2028 3467 4.997395 CCTGTATATGGTGATGTGGCTTAC 59.003 45.833 0.00 0.00 0.00 2.34
2029 3468 4.504864 GCCTGTATATGGTGATGTGGCTTA 60.505 45.833 0.00 0.00 35.44 3.09
2030 3469 3.748668 GCCTGTATATGGTGATGTGGCTT 60.749 47.826 0.00 0.00 35.44 4.35
2031 3470 2.224621 GCCTGTATATGGTGATGTGGCT 60.225 50.000 0.00 0.00 35.44 4.75
2032 3471 2.154462 GCCTGTATATGGTGATGTGGC 58.846 52.381 0.00 0.00 0.00 5.01
2033 3472 2.106338 TGGCCTGTATATGGTGATGTGG 59.894 50.000 3.32 0.00 0.00 4.17
2034 3473 3.490439 TGGCCTGTATATGGTGATGTG 57.510 47.619 3.32 0.00 0.00 3.21
2035 3474 4.207165 GTTTGGCCTGTATATGGTGATGT 58.793 43.478 3.32 0.00 0.00 3.06
2036 3475 3.569701 GGTTTGGCCTGTATATGGTGATG 59.430 47.826 3.32 0.00 0.00 3.07
2037 3476 3.204158 TGGTTTGGCCTGTATATGGTGAT 59.796 43.478 3.32 0.00 38.35 3.06
2038 3477 2.578480 TGGTTTGGCCTGTATATGGTGA 59.422 45.455 3.32 0.00 38.35 4.02
2039 3478 3.011566 TGGTTTGGCCTGTATATGGTG 57.988 47.619 3.32 0.00 38.35 4.17
2040 3479 3.748645 TTGGTTTGGCCTGTATATGGT 57.251 42.857 3.32 0.00 38.35 3.55
2041 3480 5.612725 ATTTTGGTTTGGCCTGTATATGG 57.387 39.130 3.32 0.00 38.35 2.74
2071 3510 3.055530 AGAGGTTCCTGCAAGTCTATGTG 60.056 47.826 0.00 0.00 0.00 3.21
2072 3511 3.177228 AGAGGTTCCTGCAAGTCTATGT 58.823 45.455 0.00 0.00 0.00 2.29
2073 3512 3.902881 AGAGGTTCCTGCAAGTCTATG 57.097 47.619 0.00 0.00 0.00 2.23
2074 3513 4.479786 GAAGAGGTTCCTGCAAGTCTAT 57.520 45.455 0.00 0.00 0.00 1.98
2075 3514 3.963428 GAAGAGGTTCCTGCAAGTCTA 57.037 47.619 0.00 0.00 0.00 2.59
2076 3515 2.849294 GAAGAGGTTCCTGCAAGTCT 57.151 50.000 0.00 0.00 0.00 3.24
2095 3535 2.205022 TTTCTGGAGCATGGTGAAGG 57.795 50.000 0.00 0.00 0.00 3.46
2100 3540 3.552875 CTGATGATTTCTGGAGCATGGT 58.447 45.455 0.00 0.00 0.00 3.55
2196 3636 2.419851 GCTGAGAAGTGGATGAGGAAGG 60.420 54.545 0.00 0.00 0.00 3.46
2237 3677 2.567169 CTGATGACTACACCAAGGACCA 59.433 50.000 0.00 0.00 0.00 4.02
2335 3775 3.951979 GGCTGAACCTTTGTATGATCG 57.048 47.619 0.00 0.00 34.51 3.69
2364 3804 2.636403 TGCATAGGATGATCCCACTCAG 59.364 50.000 8.08 0.00 37.19 3.35
2532 3972 8.450964 TGCATAGTTAGCAATTCTCTAAAACAC 58.549 33.333 0.00 0.00 39.39 3.32
2589 4029 5.871465 TGACGTAAGCAAATATCAGCAAA 57.129 34.783 0.00 0.00 45.62 3.68
2859 4300 4.402793 TCTGAGAACCATACAAGCTCTACC 59.597 45.833 0.00 0.00 0.00 3.18
2936 4377 6.991531 TGCCATTCTTTTTAGAGTGCATTTTT 59.008 30.769 0.00 0.00 0.00 1.94
3233 4685 4.082245 GCCTAGCAAAAATGGAAGCTAACA 60.082 41.667 0.00 0.00 38.92 2.41
3403 4855 7.041721 TCATGTCTGTCCTATTCATGTAACAC 58.958 38.462 0.00 0.00 37.64 3.32
3542 4997 2.580589 CACGGCAGTTATTTTGGAACG 58.419 47.619 0.00 0.00 31.85 3.95
3576 5031 6.214191 TCAGAAGAAGACAGATACATGGTC 57.786 41.667 0.00 0.00 0.00 4.02
3601 5056 3.403038 ACTCTGTTCGGGTTCATTTCAG 58.597 45.455 0.00 0.00 0.00 3.02
3612 5067 2.163818 TTGCTACCAACTCTGTTCGG 57.836 50.000 0.00 0.00 0.00 4.30
4106 5570 6.868339 GCAACATAATAGTTGGTTTGCTTTCT 59.132 34.615 8.66 0.00 46.81 2.52
4360 5824 9.601810 ATGACTATAACACATACCTCCTTATCA 57.398 33.333 0.00 0.00 0.00 2.15
4404 5868 3.553511 TGCAAAAGTTGTGCCAATAAACG 59.446 39.130 15.51 0.00 41.49 3.60
4406 5870 5.238214 GGAATGCAAAAGTTGTGCCAATAAA 59.762 36.000 15.51 0.00 41.49 1.40
4407 5871 4.754114 GGAATGCAAAAGTTGTGCCAATAA 59.246 37.500 15.51 0.00 41.49 1.40
4415 5909 3.825143 AGCTTGGAATGCAAAAGTTGT 57.175 38.095 0.00 0.00 39.85 3.32
4416 5910 6.790285 ATTTAGCTTGGAATGCAAAAGTTG 57.210 33.333 0.00 0.00 39.85 3.16
4471 5965 3.119137 TGACAACCTCATGATACTGACCG 60.119 47.826 0.00 0.00 0.00 4.79
4551 6053 6.717997 GGACCTGTTTAGAAGGACCAAAATAA 59.282 38.462 6.16 0.00 45.60 1.40
4655 6160 3.666797 TCGTGTATTTCGTATAGCATGCG 59.333 43.478 13.01 0.00 39.81 4.73
4919 6424 1.800586 ACTGCAACATACAGAAGTGCG 59.199 47.619 0.00 0.00 38.55 5.34
5156 6661 9.520515 ACTTCAAACATTCTACTGGTGAATTAT 57.479 29.630 0.00 0.00 32.47 1.28
5347 6927 5.531122 AGATCTTCCATGCATTCAAATGG 57.469 39.130 0.00 0.00 44.06 3.16
5404 6984 3.001533 TCAAAAGCCAACTTAACGTCGAC 59.998 43.478 5.18 5.18 34.05 4.20
5478 7058 1.004044 AGAGAACCTGGCACAAGGATG 59.996 52.381 0.00 0.00 38.70 3.51
5626 7209 0.951040 AGAAGCTCGCCAAAGGAACG 60.951 55.000 0.00 0.00 0.00 3.95
5884 7487 3.246619 GTCCAGACGAGTTAGAAAGCTG 58.753 50.000 0.00 0.00 0.00 4.24
5885 7488 2.231721 GGTCCAGACGAGTTAGAAAGCT 59.768 50.000 0.00 0.00 0.00 3.74
6133 7740 1.296392 CATCAGCAGGACGGTTCCA 59.704 57.895 0.00 0.00 45.72 3.53
6166 7774 1.595109 CTCTTGTGTGTGGCAGCGA 60.595 57.895 0.00 0.00 0.00 4.93
6180 7788 1.346062 TGCAGTCAGCTCTTCCTCTT 58.654 50.000 0.00 0.00 45.94 2.85
6206 7814 2.565834 ACCCAGTACAAGTGATAGCGTT 59.434 45.455 0.00 0.00 0.00 4.84
6207 7815 2.094182 CACCCAGTACAAGTGATAGCGT 60.094 50.000 0.00 0.00 33.21 5.07
6427 8035 0.664761 GATGGACACGATGGCAATGG 59.335 55.000 0.00 0.00 0.00 3.16
6467 8075 6.602009 TGCAGACAGATTCAAAATGAGATGAT 59.398 34.615 0.00 0.00 0.00 2.45
6488 8096 1.684983 GATGAATTCCCCACCATGCAG 59.315 52.381 2.27 0.00 0.00 4.41
6648 8258 1.549170 AGTAAGAAGGCGACGGACAAT 59.451 47.619 0.00 0.00 0.00 2.71
6776 8386 8.470002 GGAAACCAACAAGAATAAATATCTGCT 58.530 33.333 0.00 0.00 0.00 4.24
6819 8429 6.349115 GCTTTCACAGATTGTTCATCAGACAT 60.349 38.462 0.00 0.00 33.75 3.06
6860 8470 1.191535 CCGATGTACCAACTCCTCCA 58.808 55.000 0.00 0.00 0.00 3.86
6877 8487 6.877322 CACCCACTTATACCCTTAATATTCCG 59.123 42.308 0.00 0.00 0.00 4.30
6917 8527 7.011499 TCATACTTTCAAGTGCTTACCCTTA 57.989 36.000 2.26 0.00 40.07 2.69
6980 8590 3.203040 CCCCAATCCTCTAAACTGGATGT 59.797 47.826 0.00 0.00 41.76 3.06
6992 8602 1.173913 CCGTTTCAACCCCAATCCTC 58.826 55.000 0.00 0.00 0.00 3.71
7000 8610 1.460273 ATGCCACACCGTTTCAACCC 61.460 55.000 0.00 0.00 0.00 4.11
7032 8647 2.166459 TGGCGAGAAGTTCATCTACTGG 59.834 50.000 5.50 0.00 0.00 4.00
7059 8674 5.702670 CCTCAGCAGTTCATCTACTGAAAAA 59.297 40.000 7.88 0.00 46.72 1.94
7060 8675 5.240891 CCTCAGCAGTTCATCTACTGAAAA 58.759 41.667 7.88 0.00 46.72 2.29
7061 8676 4.323028 CCCTCAGCAGTTCATCTACTGAAA 60.323 45.833 7.88 0.00 46.72 2.69
7212 10549 5.064707 GCTCGAATAATTTTGGTACTGCAGA 59.935 40.000 23.35 0.48 0.00 4.26
7240 10577 9.262358 CCATTTGTACTAAGTTTCTAGCTATCC 57.738 37.037 0.00 0.00 0.00 2.59
7260 10597 5.682862 CGAAACTTTTGAGTGACTCCATTTG 59.317 40.000 10.52 0.00 0.00 2.32
7267 10604 3.808174 GGTAGCGAAACTTTTGAGTGACT 59.192 43.478 0.00 0.00 0.00 3.41
7323 10660 0.329261 TCATGGTTCTGGGCCTTCTG 59.671 55.000 4.53 0.00 0.00 3.02
7324 10661 0.329596 GTCATGGTTCTGGGCCTTCT 59.670 55.000 4.53 0.00 0.00 2.85
7325 10662 0.329596 AGTCATGGTTCTGGGCCTTC 59.670 55.000 4.53 0.00 0.00 3.46
7326 10663 0.779997 AAGTCATGGTTCTGGGCCTT 59.220 50.000 4.53 0.00 0.00 4.35
7327 10664 0.038744 CAAGTCATGGTTCTGGGCCT 59.961 55.000 4.53 0.00 0.00 5.19
7328 10665 0.038166 TCAAGTCATGGTTCTGGGCC 59.962 55.000 0.00 0.00 0.00 5.80
7329 10666 2.134789 ATCAAGTCATGGTTCTGGGC 57.865 50.000 0.00 0.00 0.00 5.36
7624 11323 5.222631 GGTAATAACCGTACCATAAGGTCG 58.777 45.833 0.00 0.00 41.30 4.79
7796 11496 5.219633 GTGTTAAAGACCGCAAATTCACAT 58.780 37.500 0.00 0.00 0.00 3.21
7884 11587 6.551385 AATTGCAACACTCTTACTCTCTTG 57.449 37.500 0.00 0.00 0.00 3.02
7899 11605 3.745975 GGGCTTACCAAAGAAATTGCAAC 59.254 43.478 0.00 0.00 39.85 4.17
7970 11827 4.288626 ACCACCACCTAACTGTCATGTTAT 59.711 41.667 0.00 0.00 32.76 1.89
8071 11928 4.040095 AGTTTCAGAAGGTAAGCCGTAAGT 59.960 41.667 0.00 0.00 40.50 2.24
8090 11947 6.604795 CCTGATATGACCCTGAAAATGAGTTT 59.395 38.462 0.00 0.00 0.00 2.66
8217 12074 6.317789 TGAAGGAAAACAACATTCTAGCAG 57.682 37.500 0.00 0.00 0.00 4.24
8324 12390 4.289672 CCCACTGGCATAAGTATATCCCTT 59.710 45.833 0.00 0.00 0.00 3.95
8336 12402 0.911769 CTCCTCAACCCACTGGCATA 59.088 55.000 0.00 0.00 33.59 3.14
8600 12814 2.922740 AAACTTCGGAGTGCCTGTAA 57.077 45.000 0.00 0.00 35.91 2.41
8740 12954 1.075748 GCAAATGGGGGAGCCTGAT 60.076 57.895 0.00 0.00 0.00 2.90
8741 12955 1.803453 AAGCAAATGGGGGAGCCTGA 61.803 55.000 0.00 0.00 0.00 3.86
8742 12956 0.906282 AAAGCAAATGGGGGAGCCTG 60.906 55.000 0.00 0.00 0.00 4.85
8743 12957 0.906282 CAAAGCAAATGGGGGAGCCT 60.906 55.000 0.00 0.00 0.00 4.58
8766 12980 2.358125 TGCCACCCATGTCGTTCG 60.358 61.111 0.00 0.00 0.00 3.95
8837 13053 0.689623 AGGAGAAGAGGTGCCAACAG 59.310 55.000 0.00 0.00 0.00 3.16
8881 13098 1.302511 CCAAGGAACCACCGACCTG 60.303 63.158 0.00 0.00 44.74 4.00
8946 13163 4.096003 CCCTACCACCCACGGCTG 62.096 72.222 0.00 0.00 0.00 4.85
8949 13166 3.081409 CTCCCCTACCACCCACGG 61.081 72.222 0.00 0.00 0.00 4.94
8950 13167 3.081409 CCTCCCCTACCACCCACG 61.081 72.222 0.00 0.00 0.00 4.94
8951 13168 1.993948 GACCTCCCCTACCACCCAC 60.994 68.421 0.00 0.00 0.00 4.61
8952 13169 2.453054 GACCTCCCCTACCACCCA 59.547 66.667 0.00 0.00 0.00 4.51
8953 13170 2.366569 GGACCTCCCCTACCACCC 60.367 72.222 0.00 0.00 0.00 4.61
8983 13200 1.748879 GCGCCCACCAAAGCTGATA 60.749 57.895 0.00 0.00 0.00 2.15
8992 13209 4.555709 ACGAACAAGCGCCCACCA 62.556 61.111 2.29 0.00 33.86 4.17
9094 13311 2.350522 CCTGTCAGAATGGGAAAGACG 58.649 52.381 0.00 0.00 36.16 4.18
9096 13313 1.988107 AGCCTGTCAGAATGGGAAAGA 59.012 47.619 0.00 0.00 36.16 2.52
9110 13327 2.624838 CAACAACAAGGATGAAGCCTGT 59.375 45.455 0.00 0.00 38.58 4.00
9131 13348 5.095490 CACTCAAACAAGAACCACAAGAAC 58.905 41.667 0.00 0.00 0.00 3.01
9132 13349 5.309323 CACTCAAACAAGAACCACAAGAA 57.691 39.130 0.00 0.00 0.00 2.52
9133 13350 4.963276 CACTCAAACAAGAACCACAAGA 57.037 40.909 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.