Multiple sequence alignment - TraesCS1D01G326100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G326100 chr1D 100.000 3134 0 0 1 3134 418738603 418735470 0.000000e+00 5788
1 TraesCS1D01G326100 chr1D 94.843 543 25 3 2593 3134 350271227 350271767 0.000000e+00 845
2 TraesCS1D01G326100 chr1D 92.205 449 20 5 1583 2029 419212803 419212368 3.430000e-174 621
3 TraesCS1D01G326100 chr1D 87.821 468 42 7 1088 1552 419026808 419026353 4.600000e-148 534
4 TraesCS1D01G326100 chr1D 89.500 400 25 6 1583 1980 418763353 418762969 1.010000e-134 490
5 TraesCS1D01G326100 chr1D 96.552 261 9 0 2338 2598 419023871 419023611 1.730000e-117 433
6 TraesCS1D01G326100 chr1D 89.028 319 22 5 936 1245 419229914 419229600 1.760000e-102 383
7 TraesCS1D01G326100 chr1D 89.904 208 12 4 2014 2214 418762977 418762772 3.100000e-65 259
8 TraesCS1D01G326100 chr1D 98.230 113 2 0 825 937 418737742 418737630 6.860000e-47 198
9 TraesCS1D01G326100 chr1D 98.230 113 2 0 862 974 418737779 418737667 6.860000e-47 198
10 TraesCS1D01G326100 chr1D 83.902 205 22 5 2404 2598 418762706 418762503 5.340000e-43 185
11 TraesCS1D01G326100 chr1D 81.333 225 24 12 2024 2231 419211875 419211652 1.930000e-37 167
12 TraesCS1D01G326100 chr1D 96.053 76 3 0 825 900 418737705 418737630 1.180000e-24 124
13 TraesCS1D01G326100 chr1D 96.053 76 3 0 899 974 418737779 418737704 1.180000e-24 124
14 TraesCS1D01G326100 chr1B 90.303 825 57 10 1583 2405 566450111 566449308 0.000000e+00 1059
15 TraesCS1D01G326100 chr1B 87.209 602 70 7 3 601 576749364 576749961 0.000000e+00 678
16 TraesCS1D01G326100 chr1B 83.815 346 38 12 945 1280 566456404 566456067 2.350000e-81 313
17 TraesCS1D01G326100 chr2D 93.532 603 35 3 1 601 110852803 110853403 0.000000e+00 894
18 TraesCS1D01G326100 chr2D 95.194 541 24 2 2595 3134 368150270 368149731 0.000000e+00 854
19 TraesCS1D01G326100 chr2D 95.028 543 25 2 2593 3134 552211073 552210532 0.000000e+00 852
20 TraesCS1D01G326100 chr2D 94.843 543 26 2 2593 3134 263281250 263281791 0.000000e+00 846
21 TraesCS1D01G326100 chr3D 95.396 543 23 2 2593 3134 322832315 322831774 0.000000e+00 863
22 TraesCS1D01G326100 chr3D 95.396 543 22 3 2593 3134 378192417 378191877 0.000000e+00 861
23 TraesCS1D01G326100 chr7D 95.028 543 25 2 2593 3134 159109761 159109220 0.000000e+00 852
24 TraesCS1D01G326100 chr7D 95.028 543 25 2 2593 3134 369314006 369313465 0.000000e+00 852
25 TraesCS1D01G326100 chr6D 94.843 543 25 3 2593 3134 208123176 208122636 0.000000e+00 845
26 TraesCS1D01G326100 chr6D 87.583 604 69 6 1 601 464870013 464869413 0.000000e+00 695
27 TraesCS1D01G326100 chr2A 91.391 604 47 4 1 601 403175397 403174796 0.000000e+00 822
28 TraesCS1D01G326100 chr2A 91.211 603 49 3 1 601 401207745 401207145 0.000000e+00 817
29 TraesCS1D01G326100 chr2B 91.240 605 46 5 1 601 49405512 49404911 0.000000e+00 817
30 TraesCS1D01G326100 chr7A 87.603 605 68 7 1 601 81830294 81830895 0.000000e+00 695
31 TraesCS1D01G326100 chr4A 86.424 604 76 6 1 601 416900056 416899456 0.000000e+00 656
32 TraesCS1D01G326100 chr1A 89.094 541 41 9 1583 2123 516064634 516064112 0.000000e+00 656
33 TraesCS1D01G326100 chr1A 93.716 366 17 6 1190 1552 516070312 516069950 7.640000e-151 544
34 TraesCS1D01G326100 chr1A 95.600 250 8 3 936 1183 516071232 516070984 6.300000e-107 398
35 TraesCS1D01G326100 chr1A 95.902 244 9 1 620 863 516071436 516071194 8.150000e-106 394
36 TraesCS1D01G326100 chr7B 86.047 602 78 6 3 601 605312478 605311880 2.640000e-180 641


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G326100 chr1D 418735470 418738603 3133 True 1286.400000 5788 97.713200 1 3134 5 chr1D.!!$R2 3133
1 TraesCS1D01G326100 chr1D 350271227 350271767 540 False 845.000000 845 94.843000 2593 3134 1 chr1D.!!$F1 541
2 TraesCS1D01G326100 chr1D 419023611 419026808 3197 True 483.500000 534 92.186500 1088 2598 2 chr1D.!!$R4 1510
3 TraesCS1D01G326100 chr1D 419211652 419212803 1151 True 394.000000 621 86.769000 1583 2231 2 chr1D.!!$R5 648
4 TraesCS1D01G326100 chr1D 418762503 418763353 850 True 311.333333 490 87.768667 1583 2598 3 chr1D.!!$R3 1015
5 TraesCS1D01G326100 chr1B 566449308 566450111 803 True 1059.000000 1059 90.303000 1583 2405 1 chr1B.!!$R1 822
6 TraesCS1D01G326100 chr1B 576749364 576749961 597 False 678.000000 678 87.209000 3 601 1 chr1B.!!$F1 598
7 TraesCS1D01G326100 chr2D 110852803 110853403 600 False 894.000000 894 93.532000 1 601 1 chr2D.!!$F1 600
8 TraesCS1D01G326100 chr2D 368149731 368150270 539 True 854.000000 854 95.194000 2595 3134 1 chr2D.!!$R1 539
9 TraesCS1D01G326100 chr2D 552210532 552211073 541 True 852.000000 852 95.028000 2593 3134 1 chr2D.!!$R2 541
10 TraesCS1D01G326100 chr2D 263281250 263281791 541 False 846.000000 846 94.843000 2593 3134 1 chr2D.!!$F2 541
11 TraesCS1D01G326100 chr3D 322831774 322832315 541 True 863.000000 863 95.396000 2593 3134 1 chr3D.!!$R1 541
12 TraesCS1D01G326100 chr3D 378191877 378192417 540 True 861.000000 861 95.396000 2593 3134 1 chr3D.!!$R2 541
13 TraesCS1D01G326100 chr7D 159109220 159109761 541 True 852.000000 852 95.028000 2593 3134 1 chr7D.!!$R1 541
14 TraesCS1D01G326100 chr7D 369313465 369314006 541 True 852.000000 852 95.028000 2593 3134 1 chr7D.!!$R2 541
15 TraesCS1D01G326100 chr6D 208122636 208123176 540 True 845.000000 845 94.843000 2593 3134 1 chr6D.!!$R1 541
16 TraesCS1D01G326100 chr6D 464869413 464870013 600 True 695.000000 695 87.583000 1 601 1 chr6D.!!$R2 600
17 TraesCS1D01G326100 chr2A 403174796 403175397 601 True 822.000000 822 91.391000 1 601 1 chr2A.!!$R2 600
18 TraesCS1D01G326100 chr2A 401207145 401207745 600 True 817.000000 817 91.211000 1 601 1 chr2A.!!$R1 600
19 TraesCS1D01G326100 chr2B 49404911 49405512 601 True 817.000000 817 91.240000 1 601 1 chr2B.!!$R1 600
20 TraesCS1D01G326100 chr7A 81830294 81830895 601 False 695.000000 695 87.603000 1 601 1 chr7A.!!$F1 600
21 TraesCS1D01G326100 chr4A 416899456 416900056 600 True 656.000000 656 86.424000 1 601 1 chr4A.!!$R1 600
22 TraesCS1D01G326100 chr1A 516064112 516064634 522 True 656.000000 656 89.094000 1583 2123 1 chr1A.!!$R1 540
23 TraesCS1D01G326100 chr1A 516069950 516071436 1486 True 445.333333 544 95.072667 620 1552 3 chr1A.!!$R2 932
24 TraesCS1D01G326100 chr7B 605311880 605312478 598 True 641.000000 641 86.047000 3 601 1 chr7B.!!$R1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
880 887 0.03601 CCCTCATTGGTTCTCGCTGT 60.036 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2650 5763 0.107897 ATAGCGGCCGATGTGTGAAA 60.108 50.0 33.48 5.56 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.589720 TGGACTTCAAGGTCTCACGTA 58.410 47.619 0.00 0.00 36.55 3.57
76 77 4.340097 TCACGTATAATGGAAGTGGTCGAT 59.660 41.667 0.00 0.00 33.98 3.59
83 84 3.762407 TGGAAGTGGTCGATCTGAAAA 57.238 42.857 0.00 0.00 0.00 2.29
84 85 3.399330 TGGAAGTGGTCGATCTGAAAAC 58.601 45.455 0.00 0.00 0.00 2.43
212 213 4.202441 CCATATAGCCACTGCCATAATCC 58.798 47.826 0.00 0.00 38.69 3.01
221 222 4.502259 CCACTGCCATAATCCTAGAGTGAC 60.502 50.000 0.00 0.00 32.78 3.67
223 224 4.343526 ACTGCCATAATCCTAGAGTGACAG 59.656 45.833 0.00 0.00 0.00 3.51
244 245 4.870426 CAGTCTGTAGCGTTTTGTATCCAT 59.130 41.667 0.00 0.00 0.00 3.41
279 280 8.519526 CCATTGCCTAATGTGAGTTAAACTTTA 58.480 33.333 0.00 0.00 41.68 1.85
375 379 2.260844 TGCTCAACAGTTTCTCCCTG 57.739 50.000 0.00 0.00 36.01 4.45
416 421 1.486310 CCTTGTGGGGATCGATCTCAA 59.514 52.381 26.08 13.53 0.00 3.02
452 457 4.202441 CCTGTTGGGAGACAATTATGAGG 58.798 47.826 0.00 0.00 41.95 3.86
472 477 6.803154 GAGGCAACCTCCACATAATTATAC 57.197 41.667 1.98 0.00 44.36 1.47
473 478 6.260700 AGGCAACCTCCACATAATTATACA 57.739 37.500 0.00 0.00 37.17 2.29
606 613 9.899226 ATTTAGTGTTCTCACAAAATTCTTAGC 57.101 29.630 1.36 0.00 46.01 3.09
607 614 6.942532 AGTGTTCTCACAAAATTCTTAGCA 57.057 33.333 1.36 0.00 46.01 3.49
608 615 7.516198 AGTGTTCTCACAAAATTCTTAGCAT 57.484 32.000 1.36 0.00 46.01 3.79
609 616 8.621532 AGTGTTCTCACAAAATTCTTAGCATA 57.378 30.769 1.36 0.00 46.01 3.14
610 617 8.507249 AGTGTTCTCACAAAATTCTTAGCATAC 58.493 33.333 1.36 0.00 46.01 2.39
611 618 7.750903 GTGTTCTCACAAAATTCTTAGCATACC 59.249 37.037 0.00 0.00 43.37 2.73
612 619 7.446931 TGTTCTCACAAAATTCTTAGCATACCA 59.553 33.333 0.00 0.00 0.00 3.25
613 620 8.462016 GTTCTCACAAAATTCTTAGCATACCAT 58.538 33.333 0.00 0.00 0.00 3.55
614 621 8.579850 TCTCACAAAATTCTTAGCATACCATT 57.420 30.769 0.00 0.00 0.00 3.16
615 622 8.461222 TCTCACAAAATTCTTAGCATACCATTG 58.539 33.333 0.00 0.00 0.00 2.82
616 623 8.347004 TCACAAAATTCTTAGCATACCATTGA 57.653 30.769 0.00 0.00 0.00 2.57
617 624 8.461222 TCACAAAATTCTTAGCATACCATTGAG 58.539 33.333 0.00 0.00 0.00 3.02
618 625 8.246180 CACAAAATTCTTAGCATACCATTGAGT 58.754 33.333 0.00 0.00 0.00 3.41
655 662 1.904287 CTGAGAGGGCTCGTAGCTAT 58.096 55.000 0.00 0.00 44.33 2.97
693 700 6.761731 TTTTTAATTTGATCTGGTGCAACG 57.238 33.333 0.00 0.00 38.12 4.10
709 716 5.448632 GGTGCAACGGATAATTAAACTCTGG 60.449 44.000 0.00 0.00 38.12 3.86
728 735 1.959899 GCTCGTGCATCTCCACAACG 61.960 60.000 4.26 0.00 39.41 4.10
751 758 4.630184 GCCATGGAGGAAATTAACTACCCA 60.630 45.833 18.40 0.00 41.22 4.51
752 759 5.515106 CCATGGAGGAAATTAACTACCCAA 58.485 41.667 5.56 0.00 41.22 4.12
771 778 4.148825 ACCCGCTCCATCTCACGC 62.149 66.667 0.00 0.00 0.00 5.34
816 823 2.513753 TCAACGAACATTCCCAATGCT 58.486 42.857 0.00 0.00 42.69 3.79
833 840 0.179936 GCTTCTCATCCCCTCACTGG 59.820 60.000 0.00 0.00 0.00 4.00
834 841 1.577736 CTTCTCATCCCCTCACTGGT 58.422 55.000 0.00 0.00 0.00 4.00
835 842 1.912043 CTTCTCATCCCCTCACTGGTT 59.088 52.381 0.00 0.00 0.00 3.67
836 843 1.573108 TCTCATCCCCTCACTGGTTC 58.427 55.000 0.00 0.00 0.00 3.62
837 844 1.079490 TCTCATCCCCTCACTGGTTCT 59.921 52.381 0.00 0.00 0.00 3.01
838 845 1.484240 CTCATCCCCTCACTGGTTCTC 59.516 57.143 0.00 0.00 0.00 2.87
839 846 0.176680 CATCCCCTCACTGGTTCTCG 59.823 60.000 0.00 0.00 0.00 4.04
840 847 1.617947 ATCCCCTCACTGGTTCTCGC 61.618 60.000 0.00 0.00 0.00 5.03
841 848 2.286523 CCCCTCACTGGTTCTCGCT 61.287 63.158 0.00 0.00 0.00 4.93
842 849 1.079543 CCCTCACTGGTTCTCGCTG 60.080 63.158 0.00 0.00 0.00 5.18
843 850 1.668294 CCTCACTGGTTCTCGCTGT 59.332 57.895 0.00 0.00 0.00 4.40
844 851 0.888619 CCTCACTGGTTCTCGCTGTA 59.111 55.000 0.00 0.00 0.00 2.74
845 852 1.135257 CCTCACTGGTTCTCGCTGTAG 60.135 57.143 0.00 0.00 0.00 2.74
846 853 1.813178 CTCACTGGTTCTCGCTGTAGA 59.187 52.381 0.00 0.00 0.00 2.59
847 854 2.229062 CTCACTGGTTCTCGCTGTAGAA 59.771 50.000 0.00 0.00 33.10 2.10
859 866 8.809468 TTCTCGCTGTAGAACATCCTATATAT 57.191 34.615 0.00 0.00 30.54 0.86
860 867 8.214721 TCTCGCTGTAGAACATCCTATATATG 57.785 38.462 0.00 0.00 0.00 1.78
861 868 6.796426 TCGCTGTAGAACATCCTATATATGC 58.204 40.000 0.00 0.00 0.00 3.14
862 869 5.980116 CGCTGTAGAACATCCTATATATGCC 59.020 44.000 0.00 0.00 0.00 4.40
863 870 6.284459 GCTGTAGAACATCCTATATATGCCC 58.716 44.000 0.00 0.00 0.00 5.36
864 871 6.098982 GCTGTAGAACATCCTATATATGCCCT 59.901 42.308 0.00 0.00 0.00 5.19
865 872 7.661536 TGTAGAACATCCTATATATGCCCTC 57.338 40.000 0.00 0.00 0.00 4.30
866 873 7.189087 TGTAGAACATCCTATATATGCCCTCA 58.811 38.462 0.00 0.00 0.00 3.86
867 874 7.846311 TGTAGAACATCCTATATATGCCCTCAT 59.154 37.037 0.00 0.00 36.73 2.90
868 875 7.761981 AGAACATCCTATATATGCCCTCATT 57.238 36.000 0.00 0.00 34.22 2.57
869 876 7.571919 AGAACATCCTATATATGCCCTCATTG 58.428 38.462 0.00 0.00 34.22 2.82
870 877 6.257994 ACATCCTATATATGCCCTCATTGG 57.742 41.667 0.00 0.00 34.22 3.16
871 878 5.733154 ACATCCTATATATGCCCTCATTGGT 59.267 40.000 0.00 0.00 34.22 3.67
872 879 6.218315 ACATCCTATATATGCCCTCATTGGTT 59.782 38.462 0.00 0.00 34.22 3.67
873 880 6.313519 TCCTATATATGCCCTCATTGGTTC 57.686 41.667 0.00 0.00 34.22 3.62
874 881 6.032039 TCCTATATATGCCCTCATTGGTTCT 58.968 40.000 0.00 0.00 34.22 3.01
875 882 6.156949 TCCTATATATGCCCTCATTGGTTCTC 59.843 42.308 0.00 0.00 34.22 2.87
876 883 2.620251 TATGCCCTCATTGGTTCTCG 57.380 50.000 0.00 0.00 34.22 4.04
877 884 0.749454 ATGCCCTCATTGGTTCTCGC 60.749 55.000 0.00 0.00 0.00 5.03
878 885 1.078143 GCCCTCATTGGTTCTCGCT 60.078 57.895 0.00 0.00 0.00 4.93
879 886 1.372087 GCCCTCATTGGTTCTCGCTG 61.372 60.000 0.00 0.00 0.00 5.18
880 887 0.036010 CCCTCATTGGTTCTCGCTGT 60.036 55.000 0.00 0.00 0.00 4.40
881 888 1.207089 CCCTCATTGGTTCTCGCTGTA 59.793 52.381 0.00 0.00 0.00 2.74
882 889 2.544685 CCTCATTGGTTCTCGCTGTAG 58.455 52.381 0.00 0.00 0.00 2.74
883 890 2.166459 CCTCATTGGTTCTCGCTGTAGA 59.834 50.000 0.00 0.00 0.00 2.59
884 891 3.368427 CCTCATTGGTTCTCGCTGTAGAA 60.368 47.826 0.00 0.00 33.10 2.10
896 903 8.809468 TTCTCGCTGTAGAACATCCTATATAT 57.191 34.615 0.00 0.00 30.54 0.86
897 904 8.214721 TCTCGCTGTAGAACATCCTATATATG 57.785 38.462 0.00 0.00 0.00 1.78
898 905 6.796426 TCGCTGTAGAACATCCTATATATGC 58.204 40.000 0.00 0.00 0.00 3.14
899 906 5.980116 CGCTGTAGAACATCCTATATATGCC 59.020 44.000 0.00 0.00 0.00 4.40
900 907 6.284459 GCTGTAGAACATCCTATATATGCCC 58.716 44.000 0.00 0.00 0.00 5.36
901 908 6.098982 GCTGTAGAACATCCTATATATGCCCT 59.901 42.308 0.00 0.00 0.00 5.19
902 909 7.661536 TGTAGAACATCCTATATATGCCCTC 57.338 40.000 0.00 0.00 0.00 4.30
903 910 7.189087 TGTAGAACATCCTATATATGCCCTCA 58.811 38.462 0.00 0.00 0.00 3.86
904 911 7.846311 TGTAGAACATCCTATATATGCCCTCAT 59.154 37.037 0.00 0.00 36.73 2.90
905 912 7.761981 AGAACATCCTATATATGCCCTCATT 57.238 36.000 0.00 0.00 34.22 2.57
906 913 7.571919 AGAACATCCTATATATGCCCTCATTG 58.428 38.462 0.00 0.00 34.22 2.82
907 914 6.257994 ACATCCTATATATGCCCTCATTGG 57.742 41.667 0.00 0.00 34.22 3.16
908 915 5.733154 ACATCCTATATATGCCCTCATTGGT 59.267 40.000 0.00 0.00 34.22 3.67
909 916 6.218315 ACATCCTATATATGCCCTCATTGGTT 59.782 38.462 0.00 0.00 34.22 3.67
910 917 6.313519 TCCTATATATGCCCTCATTGGTTC 57.686 41.667 0.00 0.00 34.22 3.62
911 918 6.032039 TCCTATATATGCCCTCATTGGTTCT 58.968 40.000 0.00 0.00 34.22 3.01
912 919 6.156949 TCCTATATATGCCCTCATTGGTTCTC 59.843 42.308 0.00 0.00 34.22 2.87
913 920 2.620251 TATGCCCTCATTGGTTCTCG 57.380 50.000 0.00 0.00 34.22 4.04
914 921 0.749454 ATGCCCTCATTGGTTCTCGC 60.749 55.000 0.00 0.00 0.00 5.03
915 922 1.078143 GCCCTCATTGGTTCTCGCT 60.078 57.895 0.00 0.00 0.00 4.93
916 923 1.092345 GCCCTCATTGGTTCTCGCTC 61.092 60.000 0.00 0.00 0.00 5.03
917 924 0.539051 CCCTCATTGGTTCTCGCTCT 59.461 55.000 0.00 0.00 0.00 4.09
918 925 1.757118 CCCTCATTGGTTCTCGCTCTA 59.243 52.381 0.00 0.00 0.00 2.43
919 926 2.223923 CCCTCATTGGTTCTCGCTCTAG 60.224 54.545 0.00 0.00 0.00 2.43
920 927 2.690497 CCTCATTGGTTCTCGCTCTAGA 59.310 50.000 0.00 0.00 0.00 2.43
921 928 3.131223 CCTCATTGGTTCTCGCTCTAGAA 59.869 47.826 0.00 0.00 33.10 2.10
934 941 8.669946 TCTCGCTCTAGAACATCCTATATATG 57.330 38.462 0.00 0.00 0.00 1.78
935 942 7.227711 TCTCGCTCTAGAACATCCTATATATGC 59.772 40.741 0.00 0.00 0.00 3.14
936 943 6.263392 TCGCTCTAGAACATCCTATATATGCC 59.737 42.308 0.00 0.00 0.00 4.40
937 944 6.515862 CGCTCTAGAACATCCTATATATGCCC 60.516 46.154 0.00 0.00 0.00 5.36
938 945 6.553100 GCTCTAGAACATCCTATATATGCCCT 59.447 42.308 0.00 0.00 0.00 5.19
939 946 7.255801 GCTCTAGAACATCCTATATATGCCCTC 60.256 44.444 0.00 0.00 0.00 4.30
940 947 7.652554 TCTAGAACATCCTATATATGCCCTCA 58.347 38.462 0.00 0.00 0.00 3.86
941 948 8.292480 TCTAGAACATCCTATATATGCCCTCAT 58.708 37.037 0.00 0.00 36.73 2.90
942 949 7.761981 AGAACATCCTATATATGCCCTCATT 57.238 36.000 0.00 0.00 34.22 2.57
943 950 7.571919 AGAACATCCTATATATGCCCTCATTG 58.428 38.462 0.00 0.00 34.22 2.82
953 960 1.092345 GCCCTCATTGGTTCTCGCTC 61.092 60.000 0.00 0.00 0.00 5.03
958 965 3.131223 CCTCATTGGTTCTCGCTCTAGAA 59.869 47.826 0.00 0.00 33.10 2.10
976 983 7.069331 GCTCTAGAACATCCTATATATGCCACT 59.931 40.741 0.00 0.00 0.00 4.00
1021 1028 4.082787 GCACTTGCTATTAAGTTTCTGCCA 60.083 41.667 0.00 0.00 38.78 4.92
1030 1037 3.375782 AAGTTTCTGCCATTGTTGCTC 57.624 42.857 0.00 0.00 0.00 4.26
1059 1066 5.491323 TGGTTCCACTACATGTACAATGA 57.509 39.130 0.08 0.00 0.00 2.57
1355 2031 2.172505 TGGAGACAAAAGACTTGCCTCA 59.827 45.455 3.71 0.00 37.44 3.86
1358 2034 4.067896 GAGACAAAAGACTTGCCTCATCA 58.932 43.478 0.00 0.00 0.00 3.07
1399 2076 3.773860 TTGCCCACTATAATTGTTGCG 57.226 42.857 0.00 0.00 0.00 4.85
1417 2094 4.848562 TGCGGTATCGATCTTTGTCTAT 57.151 40.909 0.00 0.00 39.00 1.98
1449 2126 1.814248 GCTGTTTCCTTCTTGTCCCGT 60.814 52.381 0.00 0.00 0.00 5.28
1477 2154 1.984026 GGCCATGTGTCCCTTTGGG 60.984 63.158 0.00 0.00 46.11 4.12
1515 2192 1.202371 CCATGGCAATAGCAGCTTGTG 60.202 52.381 0.00 0.00 44.61 3.33
1553 2230 3.782443 GGTCGTCTTCCCCGGCAT 61.782 66.667 0.00 0.00 0.00 4.40
1554 2231 2.202892 GTCGTCTTCCCCGGCATC 60.203 66.667 0.00 0.00 0.00 3.91
1555 2232 2.363795 TCGTCTTCCCCGGCATCT 60.364 61.111 0.00 0.00 0.00 2.90
1556 2233 2.107141 CGTCTTCCCCGGCATCTC 59.893 66.667 0.00 0.00 0.00 2.75
1558 2235 2.040442 TCTTCCCCGGCATCTCCA 59.960 61.111 0.00 0.00 34.01 3.86
1561 2238 2.599645 CTTCCCCGGCATCTCCAGTG 62.600 65.000 0.00 0.00 34.01 3.66
1562 2239 3.402681 CCCCGGCATCTCCAGTGT 61.403 66.667 0.00 0.00 34.01 3.55
1563 2240 2.187946 CCCGGCATCTCCAGTGTC 59.812 66.667 0.00 0.00 34.01 3.67
1564 2241 2.362369 CCCGGCATCTCCAGTGTCT 61.362 63.158 0.00 0.00 34.01 3.41
1565 2242 1.142748 CCGGCATCTCCAGTGTCTC 59.857 63.158 0.00 0.00 34.01 3.36
1566 2243 1.142748 CGGCATCTCCAGTGTCTCC 59.857 63.158 0.00 0.00 34.01 3.71
1567 2244 1.607801 CGGCATCTCCAGTGTCTCCA 61.608 60.000 0.00 0.00 34.01 3.86
1568 2245 0.177604 GGCATCTCCAGTGTCTCCAG 59.822 60.000 0.00 0.00 34.01 3.86
1569 2246 0.901124 GCATCTCCAGTGTCTCCAGT 59.099 55.000 0.00 0.00 0.00 4.00
1570 2247 1.405256 GCATCTCCAGTGTCTCCAGTG 60.405 57.143 0.00 0.00 40.98 3.66
1575 2252 3.639099 CAGTGTCTCCAGTGGCAAT 57.361 52.632 3.51 0.00 38.20 3.56
1576 2253 2.768253 CAGTGTCTCCAGTGGCAATA 57.232 50.000 3.51 0.00 38.20 1.90
1577 2254 2.625737 CAGTGTCTCCAGTGGCAATAG 58.374 52.381 3.51 0.00 38.20 1.73
1578 2255 1.065854 AGTGTCTCCAGTGGCAATAGC 60.066 52.381 3.51 0.00 41.10 2.97
1579 2256 0.983467 TGTCTCCAGTGGCAATAGCA 59.017 50.000 3.51 0.00 44.61 3.49
1580 2257 1.065926 TGTCTCCAGTGGCAATAGCAG 60.066 52.381 3.51 0.00 44.61 4.24
1581 2258 0.107508 TCTCCAGTGGCAATAGCAGC 60.108 55.000 3.51 0.00 44.61 5.25
1626 2303 4.157849 TGTATCGATCTCCAGTGTCTCT 57.842 45.455 0.00 0.00 0.00 3.10
1671 2348 3.427161 TGTGTATCAGCGAGTCATCAG 57.573 47.619 0.00 0.00 0.00 2.90
1672 2349 2.755103 TGTGTATCAGCGAGTCATCAGT 59.245 45.455 0.00 0.00 0.00 3.41
1673 2350 3.181496 TGTGTATCAGCGAGTCATCAGTC 60.181 47.826 0.00 0.00 0.00 3.51
1674 2351 3.016736 TGTATCAGCGAGTCATCAGTCA 58.983 45.455 0.00 0.00 0.00 3.41
1675 2352 3.633986 TGTATCAGCGAGTCATCAGTCAT 59.366 43.478 0.00 0.00 0.00 3.06
1676 2353 2.859526 TCAGCGAGTCATCAGTCATC 57.140 50.000 0.00 0.00 0.00 2.92
1677 2354 2.094675 TCAGCGAGTCATCAGTCATCA 58.905 47.619 0.00 0.00 0.00 3.07
1688 2365 6.148976 AGTCATCAGTCATCACACATTTTCTG 59.851 38.462 0.00 0.00 0.00 3.02
1742 2490 5.179452 AGATCTTCCTCCTAGCTAGCTAG 57.821 47.826 35.39 35.39 44.07 3.42
1919 2768 2.556287 GCCGGTTTCAGCAACTCG 59.444 61.111 1.90 0.00 35.46 4.18
2194 4139 6.103997 TGGAGTATTTCAGTTCAATCGTACC 58.896 40.000 0.00 0.00 0.00 3.34
2209 4840 1.467035 CGTACCGAACCTCTTCCTTCG 60.467 57.143 0.00 0.00 39.19 3.79
2210 4841 1.543358 GTACCGAACCTCTTCCTTCGT 59.457 52.381 0.00 0.00 38.05 3.85
2211 4842 1.046204 ACCGAACCTCTTCCTTCGTT 58.954 50.000 0.00 0.00 38.05 3.85
2212 4843 1.000618 ACCGAACCTCTTCCTTCGTTC 59.999 52.381 0.00 0.00 38.05 3.95
2214 4845 2.719426 GAACCTCTTCCTTCGTTCGA 57.281 50.000 0.00 0.00 0.00 3.71
2215 4846 2.597520 GAACCTCTTCCTTCGTTCGAG 58.402 52.381 0.00 0.00 0.00 4.04
2216 4847 1.618487 ACCTCTTCCTTCGTTCGAGT 58.382 50.000 0.00 0.00 0.00 4.18
2217 4848 1.962100 ACCTCTTCCTTCGTTCGAGTT 59.038 47.619 0.00 0.00 0.00 3.01
2218 4849 2.288273 ACCTCTTCCTTCGTTCGAGTTG 60.288 50.000 0.00 0.00 0.00 3.16
2219 4850 2.329379 CTCTTCCTTCGTTCGAGTTGG 58.671 52.381 0.00 0.81 0.00 3.77
2220 4851 1.958579 TCTTCCTTCGTTCGAGTTGGA 59.041 47.619 8.61 8.61 0.00 3.53
2221 4852 2.059541 CTTCCTTCGTTCGAGTTGGAC 58.940 52.381 10.99 0.00 0.00 4.02
2222 4853 1.325355 TCCTTCGTTCGAGTTGGACT 58.675 50.000 8.61 0.00 0.00 3.85
2223 4854 2.507484 TCCTTCGTTCGAGTTGGACTA 58.493 47.619 8.61 0.00 0.00 2.59
2224 4855 2.486982 TCCTTCGTTCGAGTTGGACTAG 59.513 50.000 8.61 0.00 0.00 2.57
2225 4856 2.486982 CCTTCGTTCGAGTTGGACTAGA 59.513 50.000 0.00 0.00 0.00 2.43
2226 4857 3.128938 CCTTCGTTCGAGTTGGACTAGAT 59.871 47.826 0.00 0.00 30.12 1.98
2227 4858 4.334759 CCTTCGTTCGAGTTGGACTAGATA 59.665 45.833 0.00 0.00 30.12 1.98
2228 4859 5.163683 CCTTCGTTCGAGTTGGACTAGATAA 60.164 44.000 0.00 0.00 30.12 1.75
2229 4860 5.885230 TCGTTCGAGTTGGACTAGATAAA 57.115 39.130 0.00 0.00 30.12 1.40
2230 4861 6.446781 TCGTTCGAGTTGGACTAGATAAAT 57.553 37.500 0.00 0.00 30.12 1.40
2231 4862 6.263344 TCGTTCGAGTTGGACTAGATAAATG 58.737 40.000 0.00 0.00 30.12 2.32
2232 4863 5.051641 CGTTCGAGTTGGACTAGATAAATGC 60.052 44.000 0.00 0.00 30.12 3.56
2233 4864 5.854010 TCGAGTTGGACTAGATAAATGCT 57.146 39.130 0.00 0.00 0.00 3.79
2234 4865 6.954487 TCGAGTTGGACTAGATAAATGCTA 57.046 37.500 0.00 0.00 0.00 3.49
2235 4866 7.342769 TCGAGTTGGACTAGATAAATGCTAA 57.657 36.000 0.00 0.00 0.00 3.09
2236 4867 7.952671 TCGAGTTGGACTAGATAAATGCTAAT 58.047 34.615 0.00 0.00 0.00 1.73
2237 4868 9.074576 TCGAGTTGGACTAGATAAATGCTAATA 57.925 33.333 0.00 0.00 0.00 0.98
2238 4869 9.862371 CGAGTTGGACTAGATAAATGCTAATAT 57.138 33.333 0.00 0.00 0.00 1.28
2262 4893 7.728847 TCAATTGGTGAGTATAATCATTCGG 57.271 36.000 6.11 0.00 0.00 4.30
2263 4894 7.279615 TCAATTGGTGAGTATAATCATTCGGT 58.720 34.615 6.11 0.00 0.00 4.69
2264 4895 7.226523 TCAATTGGTGAGTATAATCATTCGGTG 59.773 37.037 6.11 3.51 0.00 4.94
2265 4896 4.377021 TGGTGAGTATAATCATTCGGTGC 58.623 43.478 6.11 0.00 0.00 5.01
2266 4897 3.746492 GGTGAGTATAATCATTCGGTGCC 59.254 47.826 6.11 0.00 0.00 5.01
2267 4898 4.377021 GTGAGTATAATCATTCGGTGCCA 58.623 43.478 6.11 0.00 0.00 4.92
2268 4899 4.997395 GTGAGTATAATCATTCGGTGCCAT 59.003 41.667 6.11 0.00 0.00 4.40
2269 4900 4.996758 TGAGTATAATCATTCGGTGCCATG 59.003 41.667 0.00 0.00 0.00 3.66
2270 4901 5.221621 TGAGTATAATCATTCGGTGCCATGA 60.222 40.000 0.00 0.00 33.92 3.07
2271 4902 5.620206 AGTATAATCATTCGGTGCCATGAA 58.380 37.500 0.00 0.00 33.13 2.57
2272 4903 6.240894 AGTATAATCATTCGGTGCCATGAAT 58.759 36.000 0.00 0.00 33.13 2.57
2274 4905 0.740149 TCATTCGGTGCCATGAATGC 59.260 50.000 14.36 0.00 46.95 3.56
2275 4906 0.249155 CATTCGGTGCCATGAATGCC 60.249 55.000 8.94 0.00 43.32 4.40
2276 4907 0.683828 ATTCGGTGCCATGAATGCCA 60.684 50.000 0.00 0.00 33.72 4.92
2277 4908 0.683828 TTCGGTGCCATGAATGCCAT 60.684 50.000 0.00 0.00 35.44 4.40
2278 4909 0.683828 TCGGTGCCATGAATGCCATT 60.684 50.000 0.00 0.00 31.94 3.16
2279 4910 1.031235 CGGTGCCATGAATGCCATTA 58.969 50.000 0.00 0.00 31.94 1.90
2280 4911 1.001048 CGGTGCCATGAATGCCATTAG 60.001 52.381 0.00 0.00 31.94 1.73
2281 4912 2.309613 GGTGCCATGAATGCCATTAGA 58.690 47.619 0.00 0.00 31.94 2.10
2282 4913 2.035066 GGTGCCATGAATGCCATTAGAC 59.965 50.000 0.00 0.00 31.94 2.59
2283 4914 2.035066 GTGCCATGAATGCCATTAGACC 59.965 50.000 0.00 0.00 31.94 3.85
2284 4915 2.309613 GCCATGAATGCCATTAGACCA 58.690 47.619 0.00 0.00 31.94 4.02
2285 4916 2.035066 GCCATGAATGCCATTAGACCAC 59.965 50.000 0.00 0.00 31.94 4.16
2286 4917 2.624838 CCATGAATGCCATTAGACCACC 59.375 50.000 0.00 0.00 31.94 4.61
2287 4918 3.289836 CATGAATGCCATTAGACCACCA 58.710 45.455 0.00 0.00 31.94 4.17
2288 4919 3.448093 TGAATGCCATTAGACCACCAA 57.552 42.857 0.00 0.00 0.00 3.67
2289 4920 3.088532 TGAATGCCATTAGACCACCAAC 58.911 45.455 0.00 0.00 0.00 3.77
2290 4921 2.897271 ATGCCATTAGACCACCAACA 57.103 45.000 0.00 0.00 0.00 3.33
2291 4922 2.897271 TGCCATTAGACCACCAACAT 57.103 45.000 0.00 0.00 0.00 2.71
2292 4923 4.518278 ATGCCATTAGACCACCAACATA 57.482 40.909 0.00 0.00 0.00 2.29
2293 4924 4.518278 TGCCATTAGACCACCAACATAT 57.482 40.909 0.00 0.00 0.00 1.78
2294 4925 4.460263 TGCCATTAGACCACCAACATATC 58.540 43.478 0.00 0.00 0.00 1.63
2295 4926 3.821033 GCCATTAGACCACCAACATATCC 59.179 47.826 0.00 0.00 0.00 2.59
2296 4927 4.398319 CCATTAGACCACCAACATATCCC 58.602 47.826 0.00 0.00 0.00 3.85
2297 4928 4.398319 CATTAGACCACCAACATATCCCC 58.602 47.826 0.00 0.00 0.00 4.81
2298 4929 1.222567 AGACCACCAACATATCCCCC 58.777 55.000 0.00 0.00 0.00 5.40
2305 4936 2.243736 ACCAACATATCCCCCATTCGTT 59.756 45.455 0.00 0.00 0.00 3.85
2312 5033 3.771577 ATCCCCCATTCGTTGTATCTC 57.228 47.619 0.00 0.00 0.00 2.75
2335 5438 2.484065 CCATCCGACGGCCAGTATTTTA 60.484 50.000 9.66 0.00 0.00 1.52
2430 5533 6.559810 TGTCAGGACTTTATTTTTGTGTGTG 58.440 36.000 0.65 0.00 0.00 3.82
2441 5544 0.449786 TTGTGTGTGTGCAGAAACCG 59.550 50.000 1.00 0.00 0.00 4.44
2872 5985 3.229697 ACCCAAAGCTAAGCACTTCTT 57.770 42.857 0.00 0.00 38.79 2.52
2873 5986 4.367039 ACCCAAAGCTAAGCACTTCTTA 57.633 40.909 0.00 0.00 36.25 2.10
2882 5995 5.241506 AGCTAAGCACTTCTTACATTGCAAA 59.758 36.000 1.71 0.00 37.44 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.870633 ATACGTGAGACCTTGAAGTCC 57.129 47.619 0.00 0.00 37.49 3.85
59 60 5.614324 TTCAGATCGACCACTTCCATTAT 57.386 39.130 0.00 0.00 0.00 1.28
212 213 3.004171 ACGCTACAGACTGTCACTCTAG 58.996 50.000 12.39 3.84 0.00 2.43
221 222 4.842139 GGATACAAAACGCTACAGACTG 57.158 45.455 0.00 0.00 0.00 3.51
244 245 5.714333 TCACATTAGGCAATGGCTTTTAGAA 59.286 36.000 16.12 2.72 44.97 2.10
279 280 9.646522 AAGAATATGGTATTTGCCTGAAACTAT 57.353 29.630 0.00 0.00 0.00 2.12
280 281 9.474313 AAAGAATATGGTATTTGCCTGAAACTA 57.526 29.630 0.00 0.00 0.00 2.24
375 379 8.730680 ACAAGGTATGATTGTCATTTCTGTAAC 58.269 33.333 0.00 0.00 38.26 2.50
416 421 1.267806 CAACAGGCGCTCAACTTCAAT 59.732 47.619 7.64 0.00 0.00 2.57
452 457 8.165239 TGAATGTATAATTATGTGGAGGTTGC 57.835 34.615 8.28 0.00 0.00 4.17
470 475 9.902684 ATTCAATGCCCAAATAAAATGAATGTA 57.097 25.926 0.00 0.00 35.57 2.29
471 476 8.810990 ATTCAATGCCCAAATAAAATGAATGT 57.189 26.923 0.00 0.00 35.57 2.71
525 531 3.006247 GCTTTTTCGGATCAGAAGAGCT 58.994 45.455 24.83 0.00 37.74 4.09
538 544 1.543944 ATGGCAAGGGGGCTTTTTCG 61.544 55.000 0.00 0.00 43.83 3.46
601 608 7.657354 TGTGCTAATACTCAATGGTATGCTAAG 59.343 37.037 0.00 0.00 33.31 2.18
602 609 7.505258 TGTGCTAATACTCAATGGTATGCTAA 58.495 34.615 0.00 0.00 33.31 3.09
603 610 7.061566 TGTGCTAATACTCAATGGTATGCTA 57.938 36.000 0.00 0.00 33.31 3.49
604 611 5.928976 TGTGCTAATACTCAATGGTATGCT 58.071 37.500 0.00 0.00 33.31 3.79
605 612 6.427853 TGATGTGCTAATACTCAATGGTATGC 59.572 38.462 0.00 0.00 33.31 3.14
606 613 7.967890 TGATGTGCTAATACTCAATGGTATG 57.032 36.000 0.00 0.00 33.31 2.39
607 614 8.978874 TTTGATGTGCTAATACTCAATGGTAT 57.021 30.769 0.00 0.00 34.29 2.73
608 615 8.978874 ATTTGATGTGCTAATACTCAATGGTA 57.021 30.769 0.00 0.00 0.00 3.25
609 616 7.886629 ATTTGATGTGCTAATACTCAATGGT 57.113 32.000 0.00 0.00 0.00 3.55
610 617 7.168637 GCAATTTGATGTGCTAATACTCAATGG 59.831 37.037 0.00 0.00 37.78 3.16
611 618 8.057812 GCAATTTGATGTGCTAATACTCAATG 57.942 34.615 0.00 0.00 37.78 2.82
674 681 3.680490 TCCGTTGCACCAGATCAAATTA 58.320 40.909 0.00 0.00 0.00 1.40
693 700 4.024809 GCACGAGCCAGAGTTTAATTATCC 60.025 45.833 0.00 0.00 33.58 2.59
709 716 1.790387 GTTGTGGAGATGCACGAGC 59.210 57.895 0.00 0.00 42.57 5.03
728 735 3.889538 GGGTAGTTAATTTCCTCCATGGC 59.110 47.826 6.96 0.00 35.26 4.40
751 758 1.901085 GTGAGATGGAGCGGGTCTT 59.099 57.895 7.19 0.00 0.00 3.01
752 759 2.418910 CGTGAGATGGAGCGGGTCT 61.419 63.158 7.19 0.00 0.00 3.85
771 778 4.453136 GCTATACTTCGAGAGGAGGTACTG 59.547 50.000 0.00 0.00 42.67 2.74
816 823 1.909302 GAACCAGTGAGGGGATGAGAA 59.091 52.381 0.00 0.00 43.89 2.87
834 841 8.678199 CATATATAGGATGTTCTACAGCGAGAA 58.322 37.037 0.00 0.00 34.89 2.87
835 842 7.201741 GCATATATAGGATGTTCTACAGCGAGA 60.202 40.741 0.00 0.00 34.89 4.04
836 843 6.915300 GCATATATAGGATGTTCTACAGCGAG 59.085 42.308 0.00 0.00 34.89 5.03
837 844 6.183360 GGCATATATAGGATGTTCTACAGCGA 60.183 42.308 0.00 0.00 34.89 4.93
838 845 5.980116 GGCATATATAGGATGTTCTACAGCG 59.020 44.000 0.00 0.00 34.89 5.18
839 846 6.098982 AGGGCATATATAGGATGTTCTACAGC 59.901 42.308 0.00 0.00 32.95 4.40
840 847 7.343057 TGAGGGCATATATAGGATGTTCTACAG 59.657 40.741 0.00 0.00 0.00 2.74
841 848 7.189087 TGAGGGCATATATAGGATGTTCTACA 58.811 38.462 0.00 0.00 0.00 2.74
842 849 7.661536 TGAGGGCATATATAGGATGTTCTAC 57.338 40.000 0.00 0.00 0.00 2.59
843 850 8.708378 CAATGAGGGCATATATAGGATGTTCTA 58.292 37.037 0.00 0.00 33.44 2.10
844 851 7.366281 CCAATGAGGGCATATATAGGATGTTCT 60.366 40.741 0.00 0.00 33.44 3.01
845 852 6.769822 CCAATGAGGGCATATATAGGATGTTC 59.230 42.308 0.00 0.00 33.44 3.18
846 853 6.218315 ACCAATGAGGGCATATATAGGATGTT 59.782 38.462 0.00 0.00 43.89 2.71
847 854 5.733154 ACCAATGAGGGCATATATAGGATGT 59.267 40.000 0.00 0.00 43.89 3.06
848 855 6.257994 ACCAATGAGGGCATATATAGGATG 57.742 41.667 0.00 0.00 43.89 3.51
849 856 6.680197 AGAACCAATGAGGGCATATATAGGAT 59.320 38.462 0.00 0.00 43.89 3.24
850 857 6.032039 AGAACCAATGAGGGCATATATAGGA 58.968 40.000 0.00 0.00 43.89 2.94
851 858 6.319048 AGAACCAATGAGGGCATATATAGG 57.681 41.667 0.00 0.00 43.89 2.57
852 859 6.045318 CGAGAACCAATGAGGGCATATATAG 58.955 44.000 0.00 0.00 43.89 1.31
853 860 5.626809 GCGAGAACCAATGAGGGCATATATA 60.627 44.000 0.00 0.00 43.89 0.86
854 861 4.836825 CGAGAACCAATGAGGGCATATAT 58.163 43.478 0.00 0.00 43.89 0.86
855 862 3.557054 GCGAGAACCAATGAGGGCATATA 60.557 47.826 0.00 0.00 43.89 0.86
856 863 2.811873 GCGAGAACCAATGAGGGCATAT 60.812 50.000 0.00 0.00 43.89 1.78
857 864 1.475034 GCGAGAACCAATGAGGGCATA 60.475 52.381 0.00 0.00 43.89 3.14
858 865 0.749454 GCGAGAACCAATGAGGGCAT 60.749 55.000 0.00 0.00 43.89 4.40
859 866 1.377202 GCGAGAACCAATGAGGGCA 60.377 57.895 0.00 0.00 43.89 5.36
860 867 1.078143 AGCGAGAACCAATGAGGGC 60.078 57.895 0.00 0.00 43.89 5.19
861 868 0.036010 ACAGCGAGAACCAATGAGGG 60.036 55.000 0.00 0.00 43.89 4.30
862 869 2.166459 TCTACAGCGAGAACCAATGAGG 59.834 50.000 0.00 0.00 45.67 3.86
863 870 3.510388 TCTACAGCGAGAACCAATGAG 57.490 47.619 0.00 0.00 0.00 2.90
864 871 3.585862 GTTCTACAGCGAGAACCAATGA 58.414 45.455 14.67 0.00 46.46 2.57
865 872 3.999229 GTTCTACAGCGAGAACCAATG 57.001 47.619 14.67 0.00 46.46 2.82
871 878 8.678199 CATATATAGGATGTTCTACAGCGAGAA 58.322 37.037 0.00 0.00 34.89 2.87
872 879 7.201741 GCATATATAGGATGTTCTACAGCGAGA 60.202 40.741 0.00 0.00 34.89 4.04
873 880 6.915300 GCATATATAGGATGTTCTACAGCGAG 59.085 42.308 0.00 0.00 34.89 5.03
874 881 6.183360 GGCATATATAGGATGTTCTACAGCGA 60.183 42.308 0.00 0.00 34.89 4.93
875 882 5.980116 GGCATATATAGGATGTTCTACAGCG 59.020 44.000 0.00 0.00 34.89 5.18
876 883 6.098982 AGGGCATATATAGGATGTTCTACAGC 59.901 42.308 0.00 0.00 32.95 4.40
877 884 7.343057 TGAGGGCATATATAGGATGTTCTACAG 59.657 40.741 0.00 0.00 0.00 2.74
878 885 7.189087 TGAGGGCATATATAGGATGTTCTACA 58.811 38.462 0.00 0.00 0.00 2.74
879 886 7.661536 TGAGGGCATATATAGGATGTTCTAC 57.338 40.000 0.00 0.00 0.00 2.59
880 887 8.708378 CAATGAGGGCATATATAGGATGTTCTA 58.292 37.037 0.00 0.00 33.44 2.10
881 888 7.366281 CCAATGAGGGCATATATAGGATGTTCT 60.366 40.741 0.00 0.00 33.44 3.01
882 889 6.769822 CCAATGAGGGCATATATAGGATGTTC 59.230 42.308 0.00 0.00 33.44 3.18
883 890 6.218315 ACCAATGAGGGCATATATAGGATGTT 59.782 38.462 0.00 0.00 43.89 2.71
884 891 5.733154 ACCAATGAGGGCATATATAGGATGT 59.267 40.000 0.00 0.00 43.89 3.06
885 892 6.257994 ACCAATGAGGGCATATATAGGATG 57.742 41.667 0.00 0.00 43.89 3.51
886 893 6.680197 AGAACCAATGAGGGCATATATAGGAT 59.320 38.462 0.00 0.00 43.89 3.24
887 894 6.032039 AGAACCAATGAGGGCATATATAGGA 58.968 40.000 0.00 0.00 43.89 2.94
888 895 6.319048 AGAACCAATGAGGGCATATATAGG 57.681 41.667 0.00 0.00 43.89 2.57
889 896 6.045318 CGAGAACCAATGAGGGCATATATAG 58.955 44.000 0.00 0.00 43.89 1.31
890 897 5.626809 GCGAGAACCAATGAGGGCATATATA 60.627 44.000 0.00 0.00 43.89 0.86
891 898 4.836825 CGAGAACCAATGAGGGCATATAT 58.163 43.478 0.00 0.00 43.89 0.86
892 899 3.557054 GCGAGAACCAATGAGGGCATATA 60.557 47.826 0.00 0.00 43.89 0.86
893 900 2.811873 GCGAGAACCAATGAGGGCATAT 60.812 50.000 0.00 0.00 43.89 1.78
894 901 1.475034 GCGAGAACCAATGAGGGCATA 60.475 52.381 0.00 0.00 43.89 3.14
895 902 0.749454 GCGAGAACCAATGAGGGCAT 60.749 55.000 0.00 0.00 43.89 4.40
896 903 1.377202 GCGAGAACCAATGAGGGCA 60.377 57.895 0.00 0.00 43.89 5.36
897 904 1.078143 AGCGAGAACCAATGAGGGC 60.078 57.895 0.00 0.00 43.89 5.19
898 905 0.539051 AGAGCGAGAACCAATGAGGG 59.461 55.000 0.00 0.00 43.89 4.30
899 906 2.690497 TCTAGAGCGAGAACCAATGAGG 59.310 50.000 0.00 0.00 45.67 3.86
900 907 4.109050 GTTCTAGAGCGAGAACCAATGAG 58.891 47.826 14.67 0.00 46.46 2.90
901 908 4.111375 GTTCTAGAGCGAGAACCAATGA 57.889 45.455 14.67 0.00 46.46 2.57
908 915 9.114952 CATATATAGGATGTTCTAGAGCGAGAA 57.885 37.037 1.89 0.00 32.97 2.87
909 916 7.227711 GCATATATAGGATGTTCTAGAGCGAGA 59.772 40.741 0.00 0.00 0.00 4.04
910 917 7.359595 GCATATATAGGATGTTCTAGAGCGAG 58.640 42.308 0.00 0.00 0.00 5.03
911 918 6.263392 GGCATATATAGGATGTTCTAGAGCGA 59.737 42.308 0.00 0.00 0.00 4.93
912 919 6.442952 GGCATATATAGGATGTTCTAGAGCG 58.557 44.000 0.00 0.00 0.00 5.03
913 920 6.553100 AGGGCATATATAGGATGTTCTAGAGC 59.447 42.308 0.00 0.00 0.00 4.09
914 921 7.782168 TGAGGGCATATATAGGATGTTCTAGAG 59.218 40.741 0.00 0.00 0.00 2.43
915 922 7.652554 TGAGGGCATATATAGGATGTTCTAGA 58.347 38.462 0.00 0.00 0.00 2.43
916 923 7.904558 TGAGGGCATATATAGGATGTTCTAG 57.095 40.000 0.00 0.00 0.00 2.43
917 924 8.708378 CAATGAGGGCATATATAGGATGTTCTA 58.292 37.037 0.00 0.00 33.44 2.10
918 925 7.366281 CCAATGAGGGCATATATAGGATGTTCT 60.366 40.741 0.00 0.00 33.44 3.01
919 926 6.769822 CCAATGAGGGCATATATAGGATGTTC 59.230 42.308 0.00 0.00 33.44 3.18
920 927 6.218315 ACCAATGAGGGCATATATAGGATGTT 59.782 38.462 0.00 0.00 43.89 2.71
921 928 5.733154 ACCAATGAGGGCATATATAGGATGT 59.267 40.000 0.00 0.00 43.89 3.06
922 929 6.257994 ACCAATGAGGGCATATATAGGATG 57.742 41.667 0.00 0.00 43.89 3.51
923 930 6.680197 AGAACCAATGAGGGCATATATAGGAT 59.320 38.462 0.00 0.00 43.89 3.24
924 931 6.032039 AGAACCAATGAGGGCATATATAGGA 58.968 40.000 0.00 0.00 43.89 2.94
925 932 6.319048 AGAACCAATGAGGGCATATATAGG 57.681 41.667 0.00 0.00 43.89 2.57
926 933 6.045318 CGAGAACCAATGAGGGCATATATAG 58.955 44.000 0.00 0.00 43.89 1.31
927 934 5.626809 GCGAGAACCAATGAGGGCATATATA 60.627 44.000 0.00 0.00 43.89 0.86
928 935 4.836825 CGAGAACCAATGAGGGCATATAT 58.163 43.478 0.00 0.00 43.89 0.86
929 936 3.557054 GCGAGAACCAATGAGGGCATATA 60.557 47.826 0.00 0.00 43.89 0.86
930 937 2.811873 GCGAGAACCAATGAGGGCATAT 60.812 50.000 0.00 0.00 43.89 1.78
931 938 1.475034 GCGAGAACCAATGAGGGCATA 60.475 52.381 0.00 0.00 43.89 3.14
932 939 0.749454 GCGAGAACCAATGAGGGCAT 60.749 55.000 0.00 0.00 43.89 4.40
933 940 1.377202 GCGAGAACCAATGAGGGCA 60.377 57.895 0.00 0.00 43.89 5.36
934 941 1.078143 AGCGAGAACCAATGAGGGC 60.078 57.895 0.00 0.00 43.89 5.19
935 942 0.539051 AGAGCGAGAACCAATGAGGG 59.461 55.000 0.00 0.00 43.89 4.30
936 943 2.690497 TCTAGAGCGAGAACCAATGAGG 59.310 50.000 0.00 0.00 45.67 3.86
937 944 4.109050 GTTCTAGAGCGAGAACCAATGAG 58.891 47.826 14.67 0.00 46.46 2.90
938 945 4.111375 GTTCTAGAGCGAGAACCAATGA 57.889 45.455 14.67 0.00 46.46 2.57
953 960 7.343057 TCCAGTGGCATATATAGGATGTTCTAG 59.657 40.741 3.51 0.00 0.00 2.43
958 965 5.337571 CGTTCCAGTGGCATATATAGGATGT 60.338 44.000 3.51 0.00 0.00 3.06
976 983 0.880441 CATGCATGTGAACCGTTCCA 59.120 50.000 18.91 6.82 0.00 3.53
1021 1028 1.967319 ACCAACACTCGAGCAACAAT 58.033 45.000 13.61 0.00 0.00 2.71
1030 1037 2.519377 TGTAGTGGAACCAACACTCG 57.481 50.000 0.85 0.00 45.50 4.18
1232 1908 4.022413 AGTATCCGCAGTAGCAGATCTA 57.978 45.455 0.00 0.00 42.27 1.98
1327 2003 6.420903 GGCAAGTCTTTTGTCTCCATTTAAAC 59.579 38.462 0.00 0.00 0.00 2.01
1330 2006 5.385198 AGGCAAGTCTTTTGTCTCCATTTA 58.615 37.500 0.00 0.00 25.88 1.40
1399 2076 9.776158 CACTACATATAGACAAAGATCGATACC 57.224 37.037 0.00 0.00 32.23 2.73
1417 2094 5.720041 AGAAGGAAACAGCTACCACTACATA 59.280 40.000 0.00 0.00 0.00 2.29
1449 2126 3.506743 ACATGGCCACACCCCACA 61.507 61.111 8.16 0.00 37.83 4.17
1477 2154 4.080638 CCATGGGGATATAAGAGAAGCTCC 60.081 50.000 2.85 0.00 35.59 4.70
1515 2192 0.319900 TGCTGCTGAGGAAGACGAAC 60.320 55.000 0.00 0.00 0.00 3.95
1552 2229 1.566211 CCACTGGAGACACTGGAGAT 58.434 55.000 0.00 0.00 44.43 2.75
1553 2230 1.188219 GCCACTGGAGACACTGGAGA 61.188 60.000 0.00 0.00 44.43 3.71
1554 2231 1.294780 GCCACTGGAGACACTGGAG 59.705 63.158 0.00 0.00 44.43 3.86
1555 2232 1.053835 TTGCCACTGGAGACACTGGA 61.054 55.000 0.00 0.00 44.43 3.86
1556 2233 0.037303 ATTGCCACTGGAGACACTGG 59.963 55.000 0.00 0.00 44.47 4.00
1558 2235 1.065854 GCTATTGCCACTGGAGACACT 60.066 52.381 0.00 0.00 35.60 3.55
1561 2238 1.661341 CTGCTATTGCCACTGGAGAC 58.339 55.000 0.00 0.00 38.71 3.36
1562 2239 0.107508 GCTGCTATTGCCACTGGAGA 60.108 55.000 0.00 0.00 38.71 3.71
1563 2240 0.107312 AGCTGCTATTGCCACTGGAG 60.107 55.000 0.00 0.00 38.71 3.86
1564 2241 0.329261 AAGCTGCTATTGCCACTGGA 59.671 50.000 0.90 0.00 38.71 3.86
1565 2242 1.672881 GTAAGCTGCTATTGCCACTGG 59.327 52.381 0.90 0.00 38.71 4.00
1566 2243 2.358957 TGTAAGCTGCTATTGCCACTG 58.641 47.619 0.90 0.00 38.71 3.66
1567 2244 2.787473 TGTAAGCTGCTATTGCCACT 57.213 45.000 0.90 0.00 38.71 4.00
1568 2245 4.380531 TCTATGTAAGCTGCTATTGCCAC 58.619 43.478 0.90 0.00 38.71 5.01
1569 2246 4.687901 TCTATGTAAGCTGCTATTGCCA 57.312 40.909 0.90 0.00 38.71 4.92
1570 2247 7.011857 GGATTATCTATGTAAGCTGCTATTGCC 59.988 40.741 0.90 0.00 38.71 4.52
1571 2248 7.550551 TGGATTATCTATGTAAGCTGCTATTGC 59.449 37.037 0.90 0.00 40.20 3.56
1572 2249 9.610705 ATGGATTATCTATGTAAGCTGCTATTG 57.389 33.333 0.90 0.00 0.00 1.90
1573 2250 9.829507 GATGGATTATCTATGTAAGCTGCTATT 57.170 33.333 0.90 0.00 32.83 1.73
1574 2251 8.428063 GGATGGATTATCTATGTAAGCTGCTAT 58.572 37.037 0.90 0.00 36.03 2.97
1575 2252 7.400052 TGGATGGATTATCTATGTAAGCTGCTA 59.600 37.037 0.90 0.00 36.03 3.49
1576 2253 6.214208 TGGATGGATTATCTATGTAAGCTGCT 59.786 38.462 0.00 0.00 36.03 4.24
1577 2254 6.314896 GTGGATGGATTATCTATGTAAGCTGC 59.685 42.308 0.00 0.00 36.03 5.25
1578 2255 6.533012 CGTGGATGGATTATCTATGTAAGCTG 59.467 42.308 0.00 0.00 36.03 4.24
1579 2256 6.437477 TCGTGGATGGATTATCTATGTAAGCT 59.563 38.462 0.00 0.00 35.45 3.74
1580 2257 6.631016 TCGTGGATGGATTATCTATGTAAGC 58.369 40.000 0.00 0.00 35.45 3.09
1581 2258 8.253810 ACATCGTGGATGGATTATCTATGTAAG 58.746 37.037 10.10 0.00 43.60 2.34
1626 2303 1.099689 GCTATTTGTAGGCGCCCAAA 58.900 50.000 26.27 26.27 35.25 3.28
1671 2348 4.614535 GCAGGACAGAAAATGTGTGATGAC 60.615 45.833 0.00 0.00 44.17 3.06
1672 2349 3.503363 GCAGGACAGAAAATGTGTGATGA 59.497 43.478 0.00 0.00 44.17 2.92
1673 2350 3.253921 TGCAGGACAGAAAATGTGTGATG 59.746 43.478 0.00 0.00 44.17 3.07
1674 2351 3.489355 TGCAGGACAGAAAATGTGTGAT 58.511 40.909 0.00 0.00 44.17 3.06
1675 2352 2.929641 TGCAGGACAGAAAATGTGTGA 58.070 42.857 0.00 0.00 44.17 3.58
1676 2353 3.504906 AGATGCAGGACAGAAAATGTGTG 59.495 43.478 0.00 0.00 44.17 3.82
1677 2354 3.759581 AGATGCAGGACAGAAAATGTGT 58.240 40.909 0.00 0.00 44.17 3.72
1688 2365 2.677337 GCAAGAGAAGAAGATGCAGGAC 59.323 50.000 0.00 0.00 37.00 3.85
1743 2491 4.060038 CAAGGCCGGGCAAGCTTG 62.060 66.667 31.59 22.44 0.00 4.01
1762 2510 3.165071 GTGAATCCATTGTTGGGGAACT 58.835 45.455 0.00 0.00 43.81 3.01
1778 2527 3.121030 GAGCGGCTGCACGTGAAT 61.121 61.111 22.23 0.00 46.23 2.57
2209 4840 6.043411 AGCATTTATCTAGTCCAACTCGAAC 58.957 40.000 0.00 0.00 0.00 3.95
2210 4841 6.222038 AGCATTTATCTAGTCCAACTCGAA 57.778 37.500 0.00 0.00 0.00 3.71
2211 4842 5.854010 AGCATTTATCTAGTCCAACTCGA 57.146 39.130 0.00 0.00 0.00 4.04
2212 4843 9.862371 ATATTAGCATTTATCTAGTCCAACTCG 57.138 33.333 0.00 0.00 0.00 4.18
2236 4867 9.435688 CCGAATGATTATACTCACCAATTGATA 57.564 33.333 7.12 0.00 32.17 2.15
2237 4868 7.939039 ACCGAATGATTATACTCACCAATTGAT 59.061 33.333 7.12 0.00 32.17 2.57
2238 4869 7.226523 CACCGAATGATTATACTCACCAATTGA 59.773 37.037 7.12 0.00 0.00 2.57
2239 4870 7.355017 CACCGAATGATTATACTCACCAATTG 58.645 38.462 0.00 0.00 0.00 2.32
2240 4871 6.017109 GCACCGAATGATTATACTCACCAATT 60.017 38.462 0.00 0.00 0.00 2.32
2241 4872 5.470098 GCACCGAATGATTATACTCACCAAT 59.530 40.000 0.00 0.00 0.00 3.16
2242 4873 4.814234 GCACCGAATGATTATACTCACCAA 59.186 41.667 0.00 0.00 0.00 3.67
2243 4874 4.377021 GCACCGAATGATTATACTCACCA 58.623 43.478 0.00 0.00 0.00 4.17
2244 4875 3.746492 GGCACCGAATGATTATACTCACC 59.254 47.826 0.00 0.00 0.00 4.02
2245 4876 4.377021 TGGCACCGAATGATTATACTCAC 58.623 43.478 0.00 0.00 0.00 3.51
2246 4877 4.681074 TGGCACCGAATGATTATACTCA 57.319 40.909 0.00 0.00 0.00 3.41
2247 4878 5.237815 TCATGGCACCGAATGATTATACTC 58.762 41.667 0.00 0.00 0.00 2.59
2248 4879 5.227569 TCATGGCACCGAATGATTATACT 57.772 39.130 0.00 0.00 0.00 2.12
2249 4880 5.940192 TTCATGGCACCGAATGATTATAC 57.060 39.130 0.00 0.00 33.01 1.47
2250 4881 5.106197 GCATTCATGGCACCGAATGATTATA 60.106 40.000 30.84 3.39 44.72 0.98
2251 4882 4.321452 GCATTCATGGCACCGAATGATTAT 60.321 41.667 30.84 6.16 44.72 1.28
2252 4883 3.004629 GCATTCATGGCACCGAATGATTA 59.995 43.478 30.84 4.31 44.72 1.75
2253 4884 2.223876 GCATTCATGGCACCGAATGATT 60.224 45.455 30.84 10.06 44.72 2.57
2254 4885 1.338973 GCATTCATGGCACCGAATGAT 59.661 47.619 30.84 6.49 44.72 2.45
2255 4886 0.740149 GCATTCATGGCACCGAATGA 59.260 50.000 30.84 13.21 44.72 2.57
2256 4887 3.261441 GCATTCATGGCACCGAATG 57.739 52.632 25.93 25.93 44.73 2.67
2265 4896 2.624838 GGTGGTCTAATGGCATTCATGG 59.375 50.000 17.41 6.09 35.99 3.66
2266 4897 3.289836 TGGTGGTCTAATGGCATTCATG 58.710 45.455 17.41 8.57 35.99 3.07
2267 4898 3.668141 TGGTGGTCTAATGGCATTCAT 57.332 42.857 17.41 0.00 37.79 2.57
2268 4899 3.088532 GTTGGTGGTCTAATGGCATTCA 58.911 45.455 17.41 5.58 0.00 2.57
2269 4900 3.088532 TGTTGGTGGTCTAATGGCATTC 58.911 45.455 17.41 2.65 0.00 2.67
2270 4901 3.168035 TGTTGGTGGTCTAATGGCATT 57.832 42.857 18.01 18.01 0.00 3.56
2271 4902 2.897271 TGTTGGTGGTCTAATGGCAT 57.103 45.000 0.00 0.00 0.00 4.40
2272 4903 2.897271 ATGTTGGTGGTCTAATGGCA 57.103 45.000 0.00 0.00 0.00 4.92
2273 4904 3.821033 GGATATGTTGGTGGTCTAATGGC 59.179 47.826 0.00 0.00 0.00 4.40
2274 4905 4.398319 GGGATATGTTGGTGGTCTAATGG 58.602 47.826 0.00 0.00 0.00 3.16
2275 4906 4.398319 GGGGATATGTTGGTGGTCTAATG 58.602 47.826 0.00 0.00 0.00 1.90
2276 4907 3.397955 GGGGGATATGTTGGTGGTCTAAT 59.602 47.826 0.00 0.00 0.00 1.73
2277 4908 2.781174 GGGGGATATGTTGGTGGTCTAA 59.219 50.000 0.00 0.00 0.00 2.10
2278 4909 2.293924 TGGGGGATATGTTGGTGGTCTA 60.294 50.000 0.00 0.00 0.00 2.59
2279 4910 1.222567 GGGGGATATGTTGGTGGTCT 58.777 55.000 0.00 0.00 0.00 3.85
2280 4911 0.923358 TGGGGGATATGTTGGTGGTC 59.077 55.000 0.00 0.00 0.00 4.02
2281 4912 1.619298 ATGGGGGATATGTTGGTGGT 58.381 50.000 0.00 0.00 0.00 4.16
2282 4913 2.597455 GAATGGGGGATATGTTGGTGG 58.403 52.381 0.00 0.00 0.00 4.61
2283 4914 2.229792 CGAATGGGGGATATGTTGGTG 58.770 52.381 0.00 0.00 0.00 4.17
2284 4915 1.850345 ACGAATGGGGGATATGTTGGT 59.150 47.619 0.00 0.00 0.00 3.67
2285 4916 2.622942 CAACGAATGGGGGATATGTTGG 59.377 50.000 0.00 0.00 33.46 3.77
2286 4917 3.287222 ACAACGAATGGGGGATATGTTG 58.713 45.455 0.00 0.00 40.61 3.33
2287 4918 3.662759 ACAACGAATGGGGGATATGTT 57.337 42.857 0.00 0.00 0.00 2.71
2288 4919 4.597507 AGATACAACGAATGGGGGATATGT 59.402 41.667 0.00 0.00 0.00 2.29
2289 4920 5.046304 AGAGATACAACGAATGGGGGATATG 60.046 44.000 0.00 0.00 0.00 1.78
2290 4921 5.094387 AGAGATACAACGAATGGGGGATAT 58.906 41.667 0.00 0.00 0.00 1.63
2291 4922 4.489737 AGAGATACAACGAATGGGGGATA 58.510 43.478 0.00 0.00 0.00 2.59
2292 4923 3.318313 AGAGATACAACGAATGGGGGAT 58.682 45.455 0.00 0.00 0.00 3.85
2293 4924 2.698797 GAGAGATACAACGAATGGGGGA 59.301 50.000 0.00 0.00 0.00 4.81
2294 4925 2.224305 GGAGAGATACAACGAATGGGGG 60.224 54.545 0.00 0.00 0.00 5.40
2295 4926 2.434336 TGGAGAGATACAACGAATGGGG 59.566 50.000 0.00 0.00 0.00 4.96
2296 4927 3.819564 TGGAGAGATACAACGAATGGG 57.180 47.619 0.00 0.00 0.00 4.00
2297 4928 4.310769 GGATGGAGAGATACAACGAATGG 58.689 47.826 0.00 0.00 0.00 3.16
2298 4929 3.983988 CGGATGGAGAGATACAACGAATG 59.016 47.826 0.00 0.00 0.00 2.67
2305 4936 1.605753 CCGTCGGATGGAGAGATACA 58.394 55.000 10.90 0.00 0.00 2.29
2312 5033 1.464376 ATACTGGCCGTCGGATGGAG 61.464 60.000 20.37 11.41 0.00 3.86
2356 5459 2.905075 TGCCAATGTCCGTGAGAATAG 58.095 47.619 0.00 0.00 0.00 1.73
2357 5460 3.118445 TCATGCCAATGTCCGTGAGAATA 60.118 43.478 0.00 0.00 35.15 1.75
2362 5465 2.433970 TCTATCATGCCAATGTCCGTGA 59.566 45.455 0.00 0.00 35.15 4.35
2441 5544 8.569641 TGTAACCCTGTAATGAATAAAACACAC 58.430 33.333 0.00 0.00 0.00 3.82
2530 5643 3.637229 GACTATCCATGGAAGAACGGAGA 59.363 47.826 20.67 0.00 0.00 3.71
2622 5735 6.208988 AGTAGTAGATGCAGAATCGTTTCA 57.791 37.500 8.83 0.00 40.54 2.69
2650 5763 0.107897 ATAGCGGCCGATGTGTGAAA 60.108 50.000 33.48 5.56 0.00 2.69
2652 5765 1.067416 GATAGCGGCCGATGTGTGA 59.933 57.895 33.48 7.50 0.00 3.58
2702 5815 5.472137 TCTTGCCTAATGCGTTACTCTTTTT 59.528 36.000 0.00 0.00 45.60 1.94
2705 5818 4.202245 TCTTGCCTAATGCGTTACTCTT 57.798 40.909 0.00 0.00 45.60 2.85
2882 5995 7.072454 TGGTATGGCCTACTAGATTGATCTTTT 59.928 37.037 3.32 0.00 36.93 2.27
2904 6017 7.837863 AGTCTCTTCGAATTATCAGTTTGGTA 58.162 34.615 0.00 0.00 0.00 3.25
3083 6197 9.040259 TCTCTCTCTTTGGATCTCAATAGAAAA 57.960 33.333 0.00 0.00 34.73 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.