Multiple sequence alignment - TraesCS1D01G325300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G325300 chr1D 100.000 3632 0 0 1 3632 418043059 418046690 0.000000e+00 6708.0
1 TraesCS1D01G325300 chr1D 89.313 131 9 4 486 615 285371053 285371179 3.750000e-35 159.0
2 TraesCS1D01G325300 chr1B 91.289 3065 176 38 626 3632 564907169 564910200 0.000000e+00 4096.0
3 TraesCS1D01G325300 chr1B 83.837 959 130 16 1997 2948 565371563 565372503 0.000000e+00 889.0
4 TraesCS1D01G325300 chr1B 88.860 386 41 2 3247 3632 565515442 565515825 1.180000e-129 473.0
5 TraesCS1D01G325300 chr1B 83.746 283 30 8 2971 3240 565514874 565515153 1.670000e-63 254.0
6 TraesCS1D01G325300 chr1B 84.393 173 22 4 324 493 32994544 32994374 8.070000e-37 165.0
7 TraesCS1D01G325300 chr1B 95.000 40 2 0 1 40 399131330 399131369 3.030000e-06 63.9
8 TraesCS1D01G325300 chr1A 89.645 2588 129 41 626 3138 514690017 514692540 0.000000e+00 3166.0
9 TraesCS1D01G325300 chr1A 89.627 482 22 6 3178 3632 514692533 514693013 4.040000e-164 588.0
10 TraesCS1D01G325300 chr1A 88.406 138 9 5 486 620 144861518 144861385 3.750000e-35 159.0
11 TraesCS1D01G325300 chr1A 89.313 131 9 4 486 615 404182005 404182131 3.750000e-35 159.0
12 TraesCS1D01G325300 chr1A 89.655 87 7 1 103 189 449858302 449858386 3.830000e-20 110.0
13 TraesCS1D01G325300 chr5A 77.470 506 82 17 1609 2111 69023378 69023854 1.280000e-69 274.0
14 TraesCS1D01G325300 chr5A 90.909 121 11 0 375 495 505594143 505594263 2.900000e-36 163.0
15 TraesCS1D01G325300 chr5A 86.047 86 9 2 95 178 510907927 510908011 5.000000e-14 89.8
16 TraesCS1D01G325300 chr5A 94.872 39 2 0 190 228 205034481 205034443 1.090000e-05 62.1
17 TraesCS1D01G325300 chr5D 80.349 229 43 1 1636 1862 425086615 425086843 4.820000e-39 172.0
18 TraesCS1D01G325300 chr5D 84.884 86 10 3 103 188 115640040 115639958 2.320000e-12 84.2
19 TraesCS1D01G325300 chr2A 93.162 117 8 0 375 491 709587971 709587855 4.820000e-39 172.0
20 TraesCS1D01G325300 chr2A 90.551 127 12 0 369 495 175483350 175483476 6.240000e-38 169.0
21 TraesCS1D01G325300 chr2A 100.000 35 0 0 5 39 306169328 306169294 8.420000e-07 65.8
22 TraesCS1D01G325300 chr2D 92.437 119 9 0 375 493 579092465 579092347 1.730000e-38 171.0
23 TraesCS1D01G325300 chr2D 88.406 138 9 5 486 620 182871968 182871835 3.750000e-35 159.0
24 TraesCS1D01G325300 chr2D 100.000 35 0 0 5 39 382457200 382457166 8.420000e-07 65.8
25 TraesCS1D01G325300 chr2D 95.000 40 1 1 6 45 638315942 638315904 1.090000e-05 62.1
26 TraesCS1D01G325300 chr3D 91.597 119 10 0 374 492 337959508 337959626 8.070000e-37 165.0
27 TraesCS1D01G325300 chr3D 88.550 131 14 1 362 491 607000668 607000538 1.350000e-34 158.0
28 TraesCS1D01G325300 chr3D 91.398 93 7 1 103 195 329496866 329496957 3.810000e-25 126.0
29 TraesCS1D01G325300 chr2B 90.076 131 8 4 486 615 121270855 121270981 8.070000e-37 165.0
30 TraesCS1D01G325300 chr2B 87.500 80 9 1 117 196 638631283 638631205 1.390000e-14 91.6
31 TraesCS1D01G325300 chr4D 91.525 118 10 0 374 491 469615102 469615219 2.900000e-36 163.0
32 TraesCS1D01G325300 chr4D 89.313 131 9 4 486 615 430739216 430739342 3.750000e-35 159.0
33 TraesCS1D01G325300 chr4D 88.889 81 8 1 102 182 359199793 359199872 8.300000e-17 99.0
34 TraesCS1D01G325300 chr3A 91.525 118 10 0 375 492 455781536 455781653 2.900000e-36 163.0
35 TraesCS1D01G325300 chr7D 89.313 131 9 4 486 615 445346047 445346173 3.750000e-35 159.0
36 TraesCS1D01G325300 chr7D 97.368 38 1 0 1 38 251359560 251359597 8.420000e-07 65.8
37 TraesCS1D01G325300 chr6D 89.844 128 8 4 484 610 254776724 254776847 3.750000e-35 159.0
38 TraesCS1D01G325300 chr4B 89.313 131 9 4 486 615 438949875 438950001 3.750000e-35 159.0
39 TraesCS1D01G325300 chr4B 100.000 35 0 0 6 40 40779457 40779423 8.420000e-07 65.8
40 TraesCS1D01G325300 chr6B 84.956 113 14 3 87 199 542922065 542922174 1.070000e-20 111.0
41 TraesCS1D01G325300 chr6B 90.278 72 5 1 103 174 84933550 84933619 3.860000e-15 93.5
42 TraesCS1D01G325300 chr6B 95.122 41 2 0 1 41 525565687 525565727 8.420000e-07 65.8
43 TraesCS1D01G325300 chr5B 88.506 87 8 2 103 189 55517321 55517405 1.780000e-18 104.0
44 TraesCS1D01G325300 chr3B 93.182 44 3 0 1 44 217773242 217773285 8.420000e-07 65.8
45 TraesCS1D01G325300 chr7B 92.857 42 2 1 4 45 174674047 174674007 3.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G325300 chr1D 418043059 418046690 3631 False 6708.0 6708 100.000 1 3632 1 chr1D.!!$F2 3631
1 TraesCS1D01G325300 chr1B 564907169 564910200 3031 False 4096.0 4096 91.289 626 3632 1 chr1B.!!$F2 3006
2 TraesCS1D01G325300 chr1B 565371563 565372503 940 False 889.0 889 83.837 1997 2948 1 chr1B.!!$F3 951
3 TraesCS1D01G325300 chr1B 565514874 565515825 951 False 363.5 473 86.303 2971 3632 2 chr1B.!!$F4 661
4 TraesCS1D01G325300 chr1A 514690017 514693013 2996 False 1877.0 3166 89.636 626 3632 2 chr1A.!!$F3 3006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 260 0.179059 TGGCTTCGTGTCACATGTGT 60.179 50.0 24.63 0.0 0.0 3.72 F
1197 1225 0.030101 CTCCGCGTTCTCTCTCCATC 59.970 60.0 4.92 0.0 0.0 3.51 F
1847 1922 0.036010 CCCTCGACAACCTGCTCATT 60.036 55.0 0.00 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2130 0.620556 ACTTCTTGCCATGGGATCGT 59.379 50.000 15.13 2.7 0.00 3.73 R
2412 2501 0.324943 CCTTGTCGTCATCCAACCCT 59.675 55.000 0.00 0.0 0.00 4.34 R
2949 3050 1.488812 TGTTACACTCAGTGTTGGGCT 59.511 47.619 17.55 0.0 45.08 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.520022 TTAAGCGACGAGTAATTTGGAAC 57.480 39.130 0.00 0.00 0.00 3.62
23 24 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
24 25 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
25 26 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
26 27 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
27 28 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
28 29 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
29 30 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
30 31 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
31 32 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
32 33 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
33 34 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
34 35 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
35 36 2.905415 TTGGAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
36 37 3.393426 TTGGAACGGAGGGAGTACTAT 57.607 47.619 0.00 0.00 0.00 2.12
37 38 3.393426 TGGAACGGAGGGAGTACTATT 57.607 47.619 0.00 0.00 0.00 1.73
38 39 3.716431 TGGAACGGAGGGAGTACTATTT 58.284 45.455 0.00 0.00 0.00 1.40
39 40 4.098894 TGGAACGGAGGGAGTACTATTTT 58.901 43.478 0.00 0.00 0.00 1.82
40 41 5.271598 TGGAACGGAGGGAGTACTATTTTA 58.728 41.667 0.00 0.00 0.00 1.52
41 42 5.127682 TGGAACGGAGGGAGTACTATTTTAC 59.872 44.000 0.00 0.00 0.00 2.01
42 43 5.127682 GGAACGGAGGGAGTACTATTTTACA 59.872 44.000 0.00 0.00 0.00 2.41
43 44 5.848833 ACGGAGGGAGTACTATTTTACAG 57.151 43.478 0.00 0.00 0.00 2.74
44 45 4.099113 ACGGAGGGAGTACTATTTTACAGC 59.901 45.833 0.00 0.00 0.00 4.40
45 46 4.501058 CGGAGGGAGTACTATTTTACAGCC 60.501 50.000 0.00 0.00 0.00 4.85
46 47 4.654724 GGAGGGAGTACTATTTTACAGCCT 59.345 45.833 0.00 0.00 0.00 4.58
47 48 5.453480 GGAGGGAGTACTATTTTACAGCCTG 60.453 48.000 0.00 0.00 0.00 4.85
48 49 4.127907 GGGAGTACTATTTTACAGCCTGC 58.872 47.826 0.00 0.00 0.00 4.85
49 50 4.141688 GGGAGTACTATTTTACAGCCTGCT 60.142 45.833 0.00 0.00 0.00 4.24
50 51 5.429130 GGAGTACTATTTTACAGCCTGCTT 58.571 41.667 0.00 0.00 0.00 3.91
51 52 6.407752 GGGAGTACTATTTTACAGCCTGCTTA 60.408 42.308 0.00 0.00 0.00 3.09
52 53 7.217906 GGAGTACTATTTTACAGCCTGCTTAT 58.782 38.462 0.00 0.00 0.00 1.73
53 54 7.385478 GGAGTACTATTTTACAGCCTGCTTATC 59.615 40.741 0.00 0.00 0.00 1.75
54 55 8.024145 AGTACTATTTTACAGCCTGCTTATCT 57.976 34.615 0.00 0.00 0.00 1.98
55 56 8.487028 AGTACTATTTTACAGCCTGCTTATCTT 58.513 33.333 0.00 0.00 0.00 2.40
56 57 7.793927 ACTATTTTACAGCCTGCTTATCTTC 57.206 36.000 0.00 0.00 0.00 2.87
57 58 7.569240 ACTATTTTACAGCCTGCTTATCTTCT 58.431 34.615 0.00 0.00 0.00 2.85
58 59 6.934048 ATTTTACAGCCTGCTTATCTTCTC 57.066 37.500 0.00 0.00 0.00 2.87
59 60 5.683876 TTTACAGCCTGCTTATCTTCTCT 57.316 39.130 0.00 0.00 0.00 3.10
60 61 3.817709 ACAGCCTGCTTATCTTCTCTC 57.182 47.619 0.00 0.00 0.00 3.20
61 62 2.433970 ACAGCCTGCTTATCTTCTCTCC 59.566 50.000 0.00 0.00 0.00 3.71
62 63 2.046292 AGCCTGCTTATCTTCTCTCCC 58.954 52.381 0.00 0.00 0.00 4.30
63 64 1.765314 GCCTGCTTATCTTCTCTCCCA 59.235 52.381 0.00 0.00 0.00 4.37
64 65 2.371510 GCCTGCTTATCTTCTCTCCCAT 59.628 50.000 0.00 0.00 0.00 4.00
65 66 3.556843 GCCTGCTTATCTTCTCTCCCATC 60.557 52.174 0.00 0.00 0.00 3.51
66 67 3.903090 CCTGCTTATCTTCTCTCCCATCT 59.097 47.826 0.00 0.00 0.00 2.90
67 68 4.347583 CCTGCTTATCTTCTCTCCCATCTT 59.652 45.833 0.00 0.00 0.00 2.40
68 69 5.511202 CCTGCTTATCTTCTCTCCCATCTTC 60.511 48.000 0.00 0.00 0.00 2.87
69 70 5.215069 TGCTTATCTTCTCTCCCATCTTCT 58.785 41.667 0.00 0.00 0.00 2.85
70 71 5.304101 TGCTTATCTTCTCTCCCATCTTCTC 59.696 44.000 0.00 0.00 0.00 2.87
71 72 5.539955 GCTTATCTTCTCTCCCATCTTCTCT 59.460 44.000 0.00 0.00 0.00 3.10
72 73 6.294731 GCTTATCTTCTCTCCCATCTTCTCTC 60.295 46.154 0.00 0.00 0.00 3.20
73 74 4.879295 TCTTCTCTCCCATCTTCTCTCT 57.121 45.455 0.00 0.00 0.00 3.10
74 75 4.792068 TCTTCTCTCCCATCTTCTCTCTC 58.208 47.826 0.00 0.00 0.00 3.20
75 76 3.593442 TCTCTCCCATCTTCTCTCTCC 57.407 52.381 0.00 0.00 0.00 3.71
76 77 3.130450 TCTCTCCCATCTTCTCTCTCCT 58.870 50.000 0.00 0.00 0.00 3.69
77 78 3.531397 TCTCTCCCATCTTCTCTCTCCTT 59.469 47.826 0.00 0.00 0.00 3.36
78 79 4.016666 TCTCTCCCATCTTCTCTCTCCTTT 60.017 45.833 0.00 0.00 0.00 3.11
79 80 5.194740 TCTCTCCCATCTTCTCTCTCCTTTA 59.805 44.000 0.00 0.00 0.00 1.85
80 81 5.843469 TCTCCCATCTTCTCTCTCCTTTAA 58.157 41.667 0.00 0.00 0.00 1.52
81 82 5.659079 TCTCCCATCTTCTCTCTCCTTTAAC 59.341 44.000 0.00 0.00 0.00 2.01
82 83 5.594777 TCCCATCTTCTCTCTCCTTTAACT 58.405 41.667 0.00 0.00 0.00 2.24
83 84 6.742756 TCCCATCTTCTCTCTCCTTTAACTA 58.257 40.000 0.00 0.00 0.00 2.24
84 85 6.836527 TCCCATCTTCTCTCTCCTTTAACTAG 59.163 42.308 0.00 0.00 0.00 2.57
85 86 6.836527 CCCATCTTCTCTCTCCTTTAACTAGA 59.163 42.308 0.00 0.00 0.00 2.43
86 87 7.201875 CCCATCTTCTCTCTCCTTTAACTAGAC 60.202 44.444 0.00 0.00 0.00 2.59
87 88 7.340743 CCATCTTCTCTCTCCTTTAACTAGACA 59.659 40.741 0.00 0.00 0.00 3.41
88 89 8.744652 CATCTTCTCTCTCCTTTAACTAGACAA 58.255 37.037 0.00 0.00 0.00 3.18
89 90 8.707796 TCTTCTCTCTCCTTTAACTAGACAAA 57.292 34.615 0.00 0.00 0.00 2.83
90 91 8.798402 TCTTCTCTCTCCTTTAACTAGACAAAG 58.202 37.037 0.00 5.36 0.00 2.77
91 92 8.707796 TTCTCTCTCCTTTAACTAGACAAAGA 57.292 34.615 17.07 7.22 34.35 2.52
92 93 8.887264 TCTCTCTCCTTTAACTAGACAAAGAT 57.113 34.615 17.07 0.00 34.35 2.40
93 94 9.976776 TCTCTCTCCTTTAACTAGACAAAGATA 57.023 33.333 17.07 8.12 34.35 1.98
130 131 5.556915 CCCCCGTCTCATAATATAAAAGCA 58.443 41.667 0.00 0.00 0.00 3.91
131 132 6.180472 CCCCCGTCTCATAATATAAAAGCAT 58.820 40.000 0.00 0.00 0.00 3.79
132 133 6.659242 CCCCCGTCTCATAATATAAAAGCATT 59.341 38.462 0.00 0.00 0.00 3.56
133 134 7.176690 CCCCCGTCTCATAATATAAAAGCATTT 59.823 37.037 0.00 0.00 42.41 2.32
149 150 7.801716 AAAGCATTTTTGACACTACACTAGA 57.198 32.000 0.00 0.00 31.62 2.43
150 151 7.426929 AAGCATTTTTGACACTACACTAGAG 57.573 36.000 0.00 0.00 0.00 2.43
151 152 6.525629 AGCATTTTTGACACTACACTAGAGT 58.474 36.000 0.00 0.00 32.20 3.24
152 153 7.667557 AGCATTTTTGACACTACACTAGAGTA 58.332 34.615 0.00 0.00 29.62 2.59
153 154 8.148351 AGCATTTTTGACACTACACTAGAGTAA 58.852 33.333 0.00 0.00 29.62 2.24
154 155 8.770828 GCATTTTTGACACTACACTAGAGTAAA 58.229 33.333 0.00 0.00 29.62 2.01
178 179 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
179 180 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20
180 181 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
181 182 5.710984 ACGCTCTTATATTATGGGACGAAG 58.289 41.667 0.00 0.00 0.00 3.79
182 183 5.103000 CGCTCTTATATTATGGGACGAAGG 58.897 45.833 0.00 0.00 0.00 3.46
183 184 5.420409 GCTCTTATATTATGGGACGAAGGG 58.580 45.833 0.00 0.00 0.00 3.95
184 185 5.187186 GCTCTTATATTATGGGACGAAGGGA 59.813 44.000 0.00 0.00 0.00 4.20
185 186 6.295688 GCTCTTATATTATGGGACGAAGGGAA 60.296 42.308 0.00 0.00 0.00 3.97
186 187 7.581658 GCTCTTATATTATGGGACGAAGGGAAT 60.582 40.741 0.00 0.00 0.00 3.01
187 188 8.904648 TCTTATATTATGGGACGAAGGGAATA 57.095 34.615 0.00 0.00 0.00 1.75
188 189 8.978472 TCTTATATTATGGGACGAAGGGAATAG 58.022 37.037 0.00 0.00 0.00 1.73
189 190 8.674925 TTATATTATGGGACGAAGGGAATAGT 57.325 34.615 0.00 0.00 0.00 2.12
190 191 5.906772 ATTATGGGACGAAGGGAATAGTT 57.093 39.130 0.00 0.00 0.00 2.24
191 192 3.840124 ATGGGACGAAGGGAATAGTTC 57.160 47.619 0.00 0.00 0.00 3.01
192 193 2.829023 TGGGACGAAGGGAATAGTTCT 58.171 47.619 0.00 0.00 0.00 3.01
193 194 3.178865 TGGGACGAAGGGAATAGTTCTT 58.821 45.455 0.00 0.00 0.00 2.52
194 195 4.355549 TGGGACGAAGGGAATAGTTCTTA 58.644 43.478 0.00 0.00 0.00 2.10
195 196 4.966805 TGGGACGAAGGGAATAGTTCTTAT 59.033 41.667 0.00 0.00 0.00 1.73
196 197 6.138263 TGGGACGAAGGGAATAGTTCTTATA 58.862 40.000 0.00 0.00 0.00 0.98
197 198 6.612456 TGGGACGAAGGGAATAGTTCTTATAA 59.388 38.462 0.00 0.00 0.00 0.98
198 199 6.927936 GGGACGAAGGGAATAGTTCTTATAAC 59.072 42.308 0.00 0.00 0.00 1.89
199 200 6.927936 GGACGAAGGGAATAGTTCTTATAACC 59.072 42.308 0.00 0.00 0.00 2.85
200 201 7.201983 GGACGAAGGGAATAGTTCTTATAACCT 60.202 40.741 0.00 0.00 32.38 3.50
201 202 7.498443 ACGAAGGGAATAGTTCTTATAACCTG 58.502 38.462 0.00 0.00 31.79 4.00
202 203 6.424207 CGAAGGGAATAGTTCTTATAACCTGC 59.576 42.308 0.00 0.00 31.79 4.85
203 204 7.453141 AAGGGAATAGTTCTTATAACCTGCT 57.547 36.000 0.00 0.00 31.79 4.24
204 205 7.453141 AGGGAATAGTTCTTATAACCTGCTT 57.547 36.000 0.00 0.00 30.81 3.91
205 206 8.562949 AGGGAATAGTTCTTATAACCTGCTTA 57.437 34.615 0.00 0.00 30.81 3.09
206 207 9.172060 AGGGAATAGTTCTTATAACCTGCTTAT 57.828 33.333 0.00 0.00 30.81 1.73
207 208 9.220767 GGGAATAGTTCTTATAACCTGCTTATG 57.779 37.037 0.00 0.00 0.00 1.90
208 209 9.780186 GGAATAGTTCTTATAACCTGCTTATGT 57.220 33.333 0.00 0.00 0.00 2.29
211 212 9.765795 ATAGTTCTTATAACCTGCTTATGTCAC 57.234 33.333 0.00 0.00 0.00 3.67
212 213 7.048512 AGTTCTTATAACCTGCTTATGTCACC 58.951 38.462 0.00 0.00 0.00 4.02
213 214 5.925509 TCTTATAACCTGCTTATGTCACCC 58.074 41.667 0.00 0.00 0.00 4.61
214 215 5.665812 TCTTATAACCTGCTTATGTCACCCT 59.334 40.000 0.00 0.00 0.00 4.34
215 216 6.842280 TCTTATAACCTGCTTATGTCACCCTA 59.158 38.462 0.00 0.00 0.00 3.53
216 217 7.512746 TCTTATAACCTGCTTATGTCACCCTAT 59.487 37.037 0.00 0.00 0.00 2.57
217 218 3.845781 ACCTGCTTATGTCACCCTATG 57.154 47.619 0.00 0.00 0.00 2.23
218 219 2.439507 ACCTGCTTATGTCACCCTATGG 59.560 50.000 0.00 0.00 37.80 2.74
220 221 3.646162 CCTGCTTATGTCACCCTATGGTA 59.354 47.826 0.00 0.00 45.57 3.25
221 222 4.503296 CCTGCTTATGTCACCCTATGGTAC 60.503 50.000 0.00 0.00 45.57 3.34
222 223 4.295201 TGCTTATGTCACCCTATGGTACT 58.705 43.478 0.00 0.00 45.57 2.73
223 224 4.719773 TGCTTATGTCACCCTATGGTACTT 59.280 41.667 0.00 0.00 45.57 2.24
224 225 5.900699 TGCTTATGTCACCCTATGGTACTTA 59.099 40.000 0.00 0.00 45.57 2.24
225 226 6.557253 TGCTTATGTCACCCTATGGTACTTAT 59.443 38.462 0.00 0.00 45.57 1.73
226 227 7.071950 TGCTTATGTCACCCTATGGTACTTATT 59.928 37.037 0.00 0.00 45.57 1.40
227 228 7.603024 GCTTATGTCACCCTATGGTACTTATTC 59.397 40.741 0.00 0.00 45.57 1.75
228 229 5.524971 TGTCACCCTATGGTACTTATTCG 57.475 43.478 0.00 0.00 45.57 3.34
229 230 4.342951 TGTCACCCTATGGTACTTATTCGG 59.657 45.833 0.00 0.00 45.57 4.30
230 231 4.343239 GTCACCCTATGGTACTTATTCGGT 59.657 45.833 0.00 0.00 45.57 4.69
231 232 4.586001 TCACCCTATGGTACTTATTCGGTC 59.414 45.833 0.00 0.00 45.57 4.79
232 233 3.571401 ACCCTATGGTACTTATTCGGTCG 59.429 47.826 0.00 0.00 45.45 4.79
233 234 3.822735 CCCTATGGTACTTATTCGGTCGA 59.177 47.826 0.00 0.00 0.00 4.20
234 235 4.279169 CCCTATGGTACTTATTCGGTCGAA 59.721 45.833 8.27 8.27 38.59 3.71
235 236 5.218139 CCTATGGTACTTATTCGGTCGAAC 58.782 45.833 8.00 0.00 36.91 3.95
236 237 3.508744 TGGTACTTATTCGGTCGAACC 57.491 47.619 8.00 5.46 36.91 3.62
245 246 4.296265 GGTCGAACCGAATGGCTT 57.704 55.556 0.00 0.00 37.72 4.35
246 247 2.087344 GGTCGAACCGAATGGCTTC 58.913 57.895 0.00 0.00 37.72 3.86
256 257 2.532531 GAATGGCTTCGTGTCACATG 57.467 50.000 3.42 0.00 30.59 3.21
257 258 1.806542 GAATGGCTTCGTGTCACATGT 59.193 47.619 3.42 0.00 30.59 3.21
258 259 1.159285 ATGGCTTCGTGTCACATGTG 58.841 50.000 20.18 20.18 30.59 3.21
259 260 0.179059 TGGCTTCGTGTCACATGTGT 60.179 50.000 24.63 0.00 0.00 3.72
260 261 0.235665 GGCTTCGTGTCACATGTGTG 59.764 55.000 24.63 13.39 46.91 3.82
312 313 8.700439 ACTAAAGTTTTATTAGTTGCCAAGGA 57.300 30.769 0.00 0.00 39.88 3.36
313 314 9.138596 ACTAAAGTTTTATTAGTTGCCAAGGAA 57.861 29.630 0.00 0.00 39.88 3.36
316 317 9.923143 AAAGTTTTATTAGTTGCCAAGGAATAC 57.077 29.630 0.00 0.00 0.00 1.89
317 318 8.644374 AGTTTTATTAGTTGCCAAGGAATACA 57.356 30.769 0.00 0.00 0.00 2.29
318 319 9.084533 AGTTTTATTAGTTGCCAAGGAATACAA 57.915 29.630 0.00 0.00 0.00 2.41
319 320 9.869757 GTTTTATTAGTTGCCAAGGAATACAAT 57.130 29.630 0.00 0.00 0.00 2.71
326 327 8.904099 AGTTGCCAAGGAATACAATATAGTAC 57.096 34.615 0.00 0.00 0.00 2.73
327 328 8.714906 AGTTGCCAAGGAATACAATATAGTACT 58.285 33.333 0.00 0.00 0.00 2.73
328 329 9.338622 GTTGCCAAGGAATACAATATAGTACTT 57.661 33.333 0.00 0.00 0.00 2.24
329 330 9.555727 TTGCCAAGGAATACAATATAGTACTTC 57.444 33.333 0.00 0.00 0.00 3.01
330 331 8.154856 TGCCAAGGAATACAATATAGTACTTCC 58.845 37.037 0.00 0.00 34.92 3.46
331 332 7.606839 GCCAAGGAATACAATATAGTACTTCCC 59.393 40.741 0.00 0.00 35.07 3.97
332 333 8.881262 CCAAGGAATACAATATAGTACTTCCCT 58.119 37.037 0.00 0.00 35.07 4.20
333 334 9.930693 CAAGGAATACAATATAGTACTTCCCTC 57.069 37.037 0.00 0.00 35.07 4.30
334 335 8.667592 AGGAATACAATATAGTACTTCCCTCC 57.332 38.462 0.00 0.00 35.07 4.30
335 336 7.396623 AGGAATACAATATAGTACTTCCCTCCG 59.603 40.741 0.00 0.00 35.07 4.63
336 337 7.178097 GGAATACAATATAGTACTTCCCTCCGT 59.822 40.741 0.00 0.00 32.06 4.69
337 338 8.488308 AATACAATATAGTACTTCCCTCCGTT 57.512 34.615 0.00 0.00 0.00 4.44
338 339 6.402456 ACAATATAGTACTTCCCTCCGTTC 57.598 41.667 0.00 0.00 0.00 3.95
339 340 5.303845 ACAATATAGTACTTCCCTCCGTTCC 59.696 44.000 0.00 0.00 0.00 3.62
340 341 3.684408 ATAGTACTTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
341 342 4.803329 ATAGTACTTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
342 343 3.463048 AGTACTTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
343 344 3.782992 AGTACTTCCCTCCGTTCCTAAA 58.217 45.455 0.00 0.00 0.00 1.85
344 345 4.359996 AGTACTTCCCTCCGTTCCTAAAT 58.640 43.478 0.00 0.00 0.00 1.40
345 346 5.522641 AGTACTTCCCTCCGTTCCTAAATA 58.477 41.667 0.00 0.00 0.00 1.40
346 347 6.141790 AGTACTTCCCTCCGTTCCTAAATAT 58.858 40.000 0.00 0.00 0.00 1.28
347 348 5.291905 ACTTCCCTCCGTTCCTAAATATG 57.708 43.478 0.00 0.00 0.00 1.78
348 349 4.966805 ACTTCCCTCCGTTCCTAAATATGA 59.033 41.667 0.00 0.00 0.00 2.15
349 350 5.070580 ACTTCCCTCCGTTCCTAAATATGAG 59.929 44.000 0.00 0.00 0.00 2.90
350 351 4.553678 TCCCTCCGTTCCTAAATATGAGT 58.446 43.478 0.00 0.00 0.00 3.41
351 352 4.966805 TCCCTCCGTTCCTAAATATGAGTT 59.033 41.667 0.00 0.00 0.00 3.01
352 353 5.427481 TCCCTCCGTTCCTAAATATGAGTTT 59.573 40.000 0.00 0.00 0.00 2.66
353 354 6.069847 TCCCTCCGTTCCTAAATATGAGTTTT 60.070 38.462 0.00 0.00 0.00 2.43
354 355 6.602009 CCCTCCGTTCCTAAATATGAGTTTTT 59.398 38.462 0.00 0.00 0.00 1.94
382 383 8.770438 AGACATTTCAAATGAACTACTCTCTC 57.230 34.615 17.30 0.00 33.13 3.20
383 384 7.821846 AGACATTTCAAATGAACTACTCTCTCC 59.178 37.037 17.30 0.00 33.13 3.71
384 385 6.591834 ACATTTCAAATGAACTACTCTCTCCG 59.408 38.462 17.30 0.00 33.13 4.63
385 386 5.723672 TTCAAATGAACTACTCTCTCCGT 57.276 39.130 0.00 0.00 0.00 4.69
386 387 5.312120 TCAAATGAACTACTCTCTCCGTC 57.688 43.478 0.00 0.00 0.00 4.79
387 388 4.158025 TCAAATGAACTACTCTCTCCGTCC 59.842 45.833 0.00 0.00 0.00 4.79
388 389 1.735386 TGAACTACTCTCTCCGTCCG 58.265 55.000 0.00 0.00 0.00 4.79
389 390 1.015868 GAACTACTCTCTCCGTCCGG 58.984 60.000 0.00 0.00 0.00 5.14
390 391 0.617413 AACTACTCTCTCCGTCCGGA 59.383 55.000 0.00 0.00 42.90 5.14
391 392 0.617413 ACTACTCTCTCCGTCCGGAA 59.383 55.000 5.23 0.00 44.66 4.30
392 393 1.004044 ACTACTCTCTCCGTCCGGAAA 59.996 52.381 5.23 0.00 44.66 3.13
393 394 2.299521 CTACTCTCTCCGTCCGGAAAT 58.700 52.381 5.23 0.00 44.66 2.17
394 395 2.431954 ACTCTCTCCGTCCGGAAATA 57.568 50.000 5.23 0.00 44.66 1.40
395 396 2.022934 ACTCTCTCCGTCCGGAAATAC 58.977 52.381 5.23 0.00 44.66 1.89
396 397 2.299521 CTCTCTCCGTCCGGAAATACT 58.700 52.381 5.23 0.00 44.66 2.12
397 398 2.688958 CTCTCTCCGTCCGGAAATACTT 59.311 50.000 5.23 0.00 44.66 2.24
398 399 2.426024 TCTCTCCGTCCGGAAATACTTG 59.574 50.000 5.23 0.00 44.66 3.16
399 400 2.165845 CTCTCCGTCCGGAAATACTTGT 59.834 50.000 5.23 0.00 44.66 3.16
400 401 2.165030 TCTCCGTCCGGAAATACTTGTC 59.835 50.000 5.23 0.00 44.66 3.18
401 402 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
402 403 1.066716 CCGTCCGGAAATACTTGTCCA 60.067 52.381 5.23 0.00 37.50 4.02
403 404 2.268298 CGTCCGGAAATACTTGTCCAG 58.732 52.381 5.23 0.00 33.10 3.86
404 405 2.629051 GTCCGGAAATACTTGTCCAGG 58.371 52.381 5.23 0.00 33.10 4.45
405 406 1.557832 TCCGGAAATACTTGTCCAGGG 59.442 52.381 0.00 0.00 33.10 4.45
406 407 1.557832 CCGGAAATACTTGTCCAGGGA 59.442 52.381 0.00 0.00 33.10 4.20
407 408 2.026636 CCGGAAATACTTGTCCAGGGAA 60.027 50.000 0.00 0.00 33.10 3.97
408 409 3.371595 CCGGAAATACTTGTCCAGGGAAT 60.372 47.826 0.00 0.00 33.10 3.01
409 410 3.627577 CGGAAATACTTGTCCAGGGAATG 59.372 47.826 0.00 0.00 33.10 2.67
426 427 8.874744 CAGGGAATGGATGAATTTAGATGTAT 57.125 34.615 0.00 0.00 0.00 2.29
427 428 9.305555 CAGGGAATGGATGAATTTAGATGTATT 57.694 33.333 0.00 0.00 0.00 1.89
428 429 9.887862 AGGGAATGGATGAATTTAGATGTATTT 57.112 29.630 0.00 0.00 0.00 1.40
464 465 7.496529 ACATCCATTTGTATCCATTTCTACG 57.503 36.000 0.00 0.00 0.00 3.51
465 466 7.279615 ACATCCATTTGTATCCATTTCTACGA 58.720 34.615 0.00 0.00 0.00 3.43
466 467 7.226720 ACATCCATTTGTATCCATTTCTACGAC 59.773 37.037 0.00 0.00 0.00 4.34
467 468 6.645306 TCCATTTGTATCCATTTCTACGACA 58.355 36.000 0.00 0.00 0.00 4.35
468 469 7.106890 TCCATTTGTATCCATTTCTACGACAA 58.893 34.615 0.00 0.00 0.00 3.18
469 470 7.279981 TCCATTTGTATCCATTTCTACGACAAG 59.720 37.037 0.00 0.00 0.00 3.16
470 471 7.065803 CCATTTGTATCCATTTCTACGACAAGT 59.934 37.037 0.00 0.00 0.00 3.16
471 472 9.093970 CATTTGTATCCATTTCTACGACAAGTA 57.906 33.333 0.00 0.00 0.00 2.24
472 473 9.832445 ATTTGTATCCATTTCTACGACAAGTAT 57.168 29.630 0.00 0.00 34.34 2.12
473 474 9.661563 TTTGTATCCATTTCTACGACAAGTATT 57.338 29.630 0.00 0.00 34.34 1.89
474 475 9.661563 TTGTATCCATTTCTACGACAAGTATTT 57.338 29.630 0.00 0.00 34.34 1.40
475 476 9.661563 TGTATCCATTTCTACGACAAGTATTTT 57.338 29.630 0.00 0.00 34.34 1.82
477 478 8.786826 ATCCATTTCTACGACAAGTATTTTCA 57.213 30.769 0.00 0.00 34.34 2.69
478 479 8.610248 TCCATTTCTACGACAAGTATTTTCAA 57.390 30.769 0.00 0.00 34.34 2.69
479 480 9.058174 TCCATTTCTACGACAAGTATTTTCAAA 57.942 29.630 0.00 0.00 34.34 2.69
480 481 9.113876 CCATTTCTACGACAAGTATTTTCAAAC 57.886 33.333 0.00 0.00 34.34 2.93
481 482 8.827599 CATTTCTACGACAAGTATTTTCAAACG 58.172 33.333 0.00 0.00 34.34 3.60
482 483 6.456447 TCTACGACAAGTATTTTCAAACGG 57.544 37.500 0.00 0.00 34.34 4.44
483 484 6.215121 TCTACGACAAGTATTTTCAAACGGA 58.785 36.000 0.00 0.00 34.34 4.69
484 485 5.338614 ACGACAAGTATTTTCAAACGGAG 57.661 39.130 0.00 0.00 0.00 4.63
485 486 4.212636 ACGACAAGTATTTTCAAACGGAGG 59.787 41.667 0.00 0.00 0.00 4.30
486 487 4.378046 CGACAAGTATTTTCAAACGGAGGG 60.378 45.833 0.00 0.00 0.00 4.30
487 488 4.721132 ACAAGTATTTTCAAACGGAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
488 489 4.760204 ACAAGTATTTTCAAACGGAGGGAG 59.240 41.667 0.00 0.00 0.00 4.30
489 490 4.635699 AGTATTTTCAAACGGAGGGAGT 57.364 40.909 0.00 0.00 0.00 3.85
490 491 5.750352 AGTATTTTCAAACGGAGGGAGTA 57.250 39.130 0.00 0.00 0.00 2.59
491 492 5.485620 AGTATTTTCAAACGGAGGGAGTAC 58.514 41.667 0.00 0.00 0.00 2.73
492 493 3.842007 TTTTCAAACGGAGGGAGTACA 57.158 42.857 0.00 0.00 0.00 2.90
493 494 3.842007 TTTCAAACGGAGGGAGTACAA 57.158 42.857 0.00 0.00 0.00 2.41
494 495 2.825861 TCAAACGGAGGGAGTACAAC 57.174 50.000 0.00 0.00 0.00 3.32
495 496 2.040939 TCAAACGGAGGGAGTACAACA 58.959 47.619 0.00 0.00 0.00 3.33
496 497 2.635915 TCAAACGGAGGGAGTACAACAT 59.364 45.455 0.00 0.00 0.00 2.71
497 498 3.833650 TCAAACGGAGGGAGTACAACATA 59.166 43.478 0.00 0.00 0.00 2.29
498 499 3.881937 AACGGAGGGAGTACAACATAC 57.118 47.619 0.00 0.00 0.00 2.39
499 500 1.747355 ACGGAGGGAGTACAACATACG 59.253 52.381 4.83 4.83 0.00 3.06
500 501 1.066605 CGGAGGGAGTACAACATACGG 59.933 57.143 0.00 0.00 0.00 4.02
501 502 2.381911 GGAGGGAGTACAACATACGGA 58.618 52.381 0.00 0.00 0.00 4.69
502 503 2.963782 GGAGGGAGTACAACATACGGAT 59.036 50.000 0.00 0.00 0.00 4.18
503 504 3.243771 GGAGGGAGTACAACATACGGATG 60.244 52.174 5.94 5.94 39.16 3.51
505 506 4.539726 AGGGAGTACAACATACGGATGTA 58.460 43.478 15.10 0.00 45.93 2.29
506 507 5.145564 AGGGAGTACAACATACGGATGTAT 58.854 41.667 15.10 8.21 45.93 2.29
546 547 9.575783 AGAGTATAGATTCACTCGTTTTTCTTC 57.424 33.333 0.00 0.00 44.77 2.87
547 548 9.355215 GAGTATAGATTCACTCGTTTTTCTTCA 57.645 33.333 0.00 0.00 32.49 3.02
548 549 9.877178 AGTATAGATTCACTCGTTTTTCTTCAT 57.123 29.630 0.00 0.00 0.00 2.57
580 581 8.522178 AGTCACTCGTTGTAATCTCTAAAAAG 57.478 34.615 0.00 0.00 0.00 2.27
581 582 8.358148 AGTCACTCGTTGTAATCTCTAAAAAGA 58.642 33.333 0.00 0.00 0.00 2.52
582 583 8.426251 GTCACTCGTTGTAATCTCTAAAAAGAC 58.574 37.037 0.00 0.00 0.00 3.01
583 584 8.139350 TCACTCGTTGTAATCTCTAAAAAGACA 58.861 33.333 0.00 0.00 0.00 3.41
584 585 8.926710 CACTCGTTGTAATCTCTAAAAAGACAT 58.073 33.333 0.00 0.00 0.00 3.06
612 613 3.328382 TGGAAACAAGGGAGTACATCG 57.672 47.619 0.00 0.00 37.44 3.84
613 614 2.007608 GGAAACAAGGGAGTACATCGC 58.992 52.381 0.00 0.00 41.11 4.58
614 615 2.614481 GGAAACAAGGGAGTACATCGCA 60.614 50.000 0.00 0.00 43.20 5.10
615 616 2.094762 AACAAGGGAGTACATCGCAC 57.905 50.000 0.00 0.00 43.20 5.34
616 617 0.973632 ACAAGGGAGTACATCGCACA 59.026 50.000 0.00 0.00 43.20 4.57
617 618 1.555075 ACAAGGGAGTACATCGCACAT 59.445 47.619 0.00 0.00 43.20 3.21
618 619 1.935873 CAAGGGAGTACATCGCACATG 59.064 52.381 0.00 0.00 43.20 3.21
619 620 0.179073 AGGGAGTACATCGCACATGC 60.179 55.000 0.00 0.00 43.20 4.06
636 637 3.829754 GCGTCTAGCGTCTAGAAGG 57.170 57.895 21.39 15.56 43.66 3.46
677 678 0.249953 TGAGCTCGTTAAACGCCCAA 60.250 50.000 9.64 0.00 42.21 4.12
704 705 5.548406 ACAGTAACAATAAAGGCTTCGAGT 58.452 37.500 0.00 0.00 0.00 4.18
966 976 3.127533 GCGCGCCCATTGTTCTCT 61.128 61.111 23.24 0.00 0.00 3.10
978 993 3.816398 TTGTTCTCTCTCTCCCTCTCA 57.184 47.619 0.00 0.00 0.00 3.27
982 1010 2.556766 TCTCTCTCTCCCTCTCACTCA 58.443 52.381 0.00 0.00 0.00 3.41
984 1012 1.064758 TCTCTCTCCCTCTCACTCAGC 60.065 57.143 0.00 0.00 0.00 4.26
988 1016 0.752054 CTCCCTCTCACTCAGCATCC 59.248 60.000 0.00 0.00 0.00 3.51
989 1017 0.337773 TCCCTCTCACTCAGCATCCT 59.662 55.000 0.00 0.00 0.00 3.24
1184 1212 2.100991 GCAAATTCTGCCTCCGCG 59.899 61.111 0.00 0.00 46.13 6.46
1185 1213 2.690778 GCAAATTCTGCCTCCGCGT 61.691 57.895 4.92 0.00 46.13 6.01
1186 1214 1.875963 CAAATTCTGCCTCCGCGTT 59.124 52.632 4.92 0.00 38.08 4.84
1187 1215 0.179189 CAAATTCTGCCTCCGCGTTC 60.179 55.000 4.92 0.00 38.08 3.95
1188 1216 0.321653 AAATTCTGCCTCCGCGTTCT 60.322 50.000 4.92 0.00 38.08 3.01
1189 1217 0.741221 AATTCTGCCTCCGCGTTCTC 60.741 55.000 4.92 0.00 38.08 2.87
1190 1218 1.608717 ATTCTGCCTCCGCGTTCTCT 61.609 55.000 4.92 0.00 38.08 3.10
1191 1219 2.202676 CTGCCTCCGCGTTCTCTC 60.203 66.667 4.92 0.00 38.08 3.20
1192 1220 2.676822 TGCCTCCGCGTTCTCTCT 60.677 61.111 4.92 0.00 38.08 3.10
1193 1221 2.103340 GCCTCCGCGTTCTCTCTC 59.897 66.667 4.92 0.00 0.00 3.20
1194 1222 2.802106 CCTCCGCGTTCTCTCTCC 59.198 66.667 4.92 0.00 0.00 3.71
1195 1223 2.046864 CCTCCGCGTTCTCTCTCCA 61.047 63.158 4.92 0.00 0.00 3.86
1196 1224 1.388065 CCTCCGCGTTCTCTCTCCAT 61.388 60.000 4.92 0.00 0.00 3.41
1197 1225 0.030101 CTCCGCGTTCTCTCTCCATC 59.970 60.000 4.92 0.00 0.00 3.51
1220 1248 5.046591 TCTCTCGAGTGGATTTATTGTGGTT 60.047 40.000 13.13 0.00 0.00 3.67
1221 1249 6.153851 TCTCTCGAGTGGATTTATTGTGGTTA 59.846 38.462 13.13 0.00 0.00 2.85
1222 1250 6.703319 TCTCGAGTGGATTTATTGTGGTTAA 58.297 36.000 13.13 0.00 0.00 2.01
1223 1251 7.162761 TCTCGAGTGGATTTATTGTGGTTAAA 58.837 34.615 13.13 0.00 0.00 1.52
1224 1252 7.662258 TCTCGAGTGGATTTATTGTGGTTAAAA 59.338 33.333 13.13 0.00 0.00 1.52
1225 1253 7.586747 TCGAGTGGATTTATTGTGGTTAAAAC 58.413 34.615 0.00 0.00 0.00 2.43
1226 1254 7.446013 TCGAGTGGATTTATTGTGGTTAAAACT 59.554 33.333 0.00 0.00 0.00 2.66
1247 1275 7.812690 AACTTAAAACGGAAACTGGAATAGT 57.187 32.000 0.00 0.00 42.89 2.12
1248 1276 8.907222 AACTTAAAACGGAAACTGGAATAGTA 57.093 30.769 0.00 0.00 39.18 1.82
1309 1348 1.885871 GGCCACCATGAAAGCAGAC 59.114 57.895 0.00 0.00 0.00 3.51
1310 1349 1.503542 GCCACCATGAAAGCAGACG 59.496 57.895 0.00 0.00 0.00 4.18
1311 1350 1.237285 GCCACCATGAAAGCAGACGT 61.237 55.000 0.00 0.00 0.00 4.34
1313 1352 0.798776 CACCATGAAAGCAGACGTCC 59.201 55.000 13.01 0.00 0.00 4.79
1314 1353 0.396435 ACCATGAAAGCAGACGTCCA 59.604 50.000 13.01 1.73 0.00 4.02
1315 1354 1.202758 ACCATGAAAGCAGACGTCCAA 60.203 47.619 13.01 0.00 0.00 3.53
1386 1435 2.867109 TCTTCTTTGCTCCTCTTGGG 57.133 50.000 0.00 0.00 0.00 4.12
1389 1438 2.034066 TTTGCTCCTCTTGGGCGG 59.966 61.111 0.00 0.00 33.90 6.13
1468 1521 4.451150 GCAGTGGTCCATCGCGGA 62.451 66.667 6.13 0.00 43.61 5.54
1556 1625 9.276590 CCATAATTCATGATTAGTAGCTGAACA 57.723 33.333 0.00 0.00 36.69 3.18
1560 1629 9.453572 AATTCATGATTAGTAGCTGAACAAGAA 57.546 29.630 0.00 0.00 0.00 2.52
1847 1922 0.036010 CCCTCGACAACCTGCTCATT 60.036 55.000 0.00 0.00 0.00 2.57
1876 1951 0.250467 AAGGTGCGTCTCAGTTGCAT 60.250 50.000 0.00 0.00 41.23 3.96
1902 1978 2.821969 CACAGGGAAATCTGTTCAAGGG 59.178 50.000 0.00 0.00 44.74 3.95
1910 1986 4.559862 AATCTGTTCAAGGGTCGATTCT 57.440 40.909 0.00 0.00 0.00 2.40
1925 2005 6.425504 GGTCGATTCTTGCATCAATTCTAAG 58.574 40.000 0.00 0.00 0.00 2.18
1957 2037 8.400184 TGTCTCATTTTGATCTTCAGAAATGT 57.600 30.769 16.02 0.00 36.87 2.71
2050 2130 0.036388 GGAAGATCACCAAGACGGCA 60.036 55.000 0.00 0.00 39.03 5.69
2218 2298 6.391227 AGGTTACTGAAACTTTTGATGTGG 57.609 37.500 0.00 0.00 38.23 4.17
2283 2372 1.549203 ATGAAGCCGCTGAATTGGTT 58.451 45.000 0.00 0.00 0.00 3.67
2289 2378 1.668751 GCCGCTGAATTGGTTTATCGA 59.331 47.619 0.00 0.00 0.00 3.59
2391 2480 1.983972 CAGTGCAAGTACTCGAGGAC 58.016 55.000 20.73 20.73 0.00 3.85
2412 2501 2.097629 CGTCCTACTTCGCAGAATCTCA 59.902 50.000 0.00 0.00 45.90 3.27
2475 2564 3.733960 CGTGAGCTCGGTCCGACA 61.734 66.667 10.71 4.21 0.00 4.35
2556 2645 5.971763 AGACTAGACCTTGTGATGAATGAC 58.028 41.667 0.00 0.00 0.00 3.06
2641 2730 6.348950 CCAAATGGCTTGTTGATTCGTTACTA 60.349 38.462 0.00 0.00 32.65 1.82
2648 2737 6.145696 GCTTGTTGATTCGTTACTAAGTCAGT 59.854 38.462 0.00 0.00 41.62 3.41
2785 2886 3.144506 CATAAGCAGCTAGGGTTGATGG 58.855 50.000 0.00 0.00 0.00 3.51
2846 2947 1.809567 GCAGTTGGTCTTTGCCCAGG 61.810 60.000 0.00 0.00 32.49 4.45
2847 2948 0.178992 CAGTTGGTCTTTGCCCAGGA 60.179 55.000 0.00 0.00 32.49 3.86
2949 3050 9.625747 AATGATTCCTTTTCCTTTTGCTAAAAA 57.374 25.926 0.00 0.00 34.17 1.94
2964 3066 3.550842 GCTAAAAAGCCCAACACTGAGTG 60.551 47.826 11.70 11.70 39.75 3.51
2983 3085 7.065803 ACTGAGTGTAACATATTGCATACCAAC 59.934 37.037 0.00 0.00 41.43 3.77
2999 3101 8.538701 TGCATACCAACTAAAATTTCATCCATT 58.461 29.630 0.00 0.00 0.00 3.16
3074 3189 1.135373 AGAGACGTGGTGCTGAATACG 60.135 52.381 0.00 0.00 41.86 3.06
3081 3196 3.737047 CGTGGTGCTGAATACGGATAAGT 60.737 47.826 0.00 0.00 33.27 2.24
3118 3233 5.469760 CACTCACAAAATAGACATGTGGTGA 59.530 40.000 1.15 4.79 42.40 4.02
3127 3243 4.679373 AGACATGTGGTGATGGATACTC 57.321 45.455 1.15 0.00 37.61 2.59
3152 3268 8.771766 TCGTAAGAGATCAGTATATACACACAC 58.228 37.037 15.18 3.03 45.01 3.82
3188 3309 2.082231 CACTGCAAGAAGACATCCCAG 58.918 52.381 0.00 0.00 37.43 4.45
3236 3357 8.932791 CAAGAGTTTGGTTCGTTACTGTATATT 58.067 33.333 0.00 0.00 0.00 1.28
3240 3361 9.538508 AGTTTGGTTCGTTACTGTATATTATCC 57.461 33.333 0.00 0.00 0.00 2.59
3293 3703 8.871686 AAGGACACAAAATAAAGAATGTGAAC 57.128 30.769 11.30 4.15 44.52 3.18
3309 3719 4.388485 TGTGAACTCTGCAATGCTCTTTA 58.612 39.130 6.82 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.090354 CGTTCCAAATTACTCGTCGCTTAA 59.910 41.667 0.00 0.00 0.00 1.85
1 2 3.609373 CGTTCCAAATTACTCGTCGCTTA 59.391 43.478 0.00 0.00 0.00 3.09
2 3 2.410730 CGTTCCAAATTACTCGTCGCTT 59.589 45.455 0.00 0.00 0.00 4.68
3 4 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
4 5 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
5 6 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
6 7 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
7 8 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
8 9 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
9 10 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
10 11 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
11 12 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
12 13 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
13 14 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
14 15 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
15 16 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
16 17 2.905415 TAGTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
17 18 3.393426 AATAGTACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
18 19 4.750021 AAAATAGTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
19 20 6.212888 TGTAAAATAGTACTCCCTCCGTTC 57.787 41.667 0.00 0.00 0.00 3.95
20 21 5.394993 GCTGTAAAATAGTACTCCCTCCGTT 60.395 44.000 0.00 0.00 0.00 4.44
21 22 4.099113 GCTGTAAAATAGTACTCCCTCCGT 59.901 45.833 0.00 0.00 0.00 4.69
22 23 4.501058 GGCTGTAAAATAGTACTCCCTCCG 60.501 50.000 0.00 0.00 0.00 4.63
23 24 4.654724 AGGCTGTAAAATAGTACTCCCTCC 59.345 45.833 0.00 0.00 0.00 4.30
24 25 5.602628 CAGGCTGTAAAATAGTACTCCCTC 58.397 45.833 6.28 0.00 0.00 4.30
25 26 4.141688 GCAGGCTGTAAAATAGTACTCCCT 60.142 45.833 17.16 0.00 0.00 4.20
26 27 4.127907 GCAGGCTGTAAAATAGTACTCCC 58.872 47.826 17.16 0.00 0.00 4.30
27 28 5.024785 AGCAGGCTGTAAAATAGTACTCC 57.975 43.478 17.16 0.00 0.00 3.85
28 29 8.145122 AGATAAGCAGGCTGTAAAATAGTACTC 58.855 37.037 17.16 0.00 0.00 2.59
29 30 8.024145 AGATAAGCAGGCTGTAAAATAGTACT 57.976 34.615 17.16 0.00 0.00 2.73
30 31 8.664211 AAGATAAGCAGGCTGTAAAATAGTAC 57.336 34.615 17.16 0.00 0.00 2.73
31 32 8.705594 AGAAGATAAGCAGGCTGTAAAATAGTA 58.294 33.333 17.16 0.00 0.00 1.82
32 33 7.569240 AGAAGATAAGCAGGCTGTAAAATAGT 58.431 34.615 17.16 0.00 0.00 2.12
33 34 7.930865 AGAGAAGATAAGCAGGCTGTAAAATAG 59.069 37.037 17.16 0.00 0.00 1.73
34 35 7.796054 AGAGAAGATAAGCAGGCTGTAAAATA 58.204 34.615 17.16 3.14 0.00 1.40
35 36 6.657875 AGAGAAGATAAGCAGGCTGTAAAAT 58.342 36.000 17.16 4.99 0.00 1.82
36 37 6.054860 AGAGAAGATAAGCAGGCTGTAAAA 57.945 37.500 17.16 0.00 0.00 1.52
37 38 5.395768 GGAGAGAAGATAAGCAGGCTGTAAA 60.396 44.000 17.16 1.68 0.00 2.01
38 39 4.100189 GGAGAGAAGATAAGCAGGCTGTAA 59.900 45.833 17.16 2.06 0.00 2.41
39 40 3.639094 GGAGAGAAGATAAGCAGGCTGTA 59.361 47.826 17.16 1.41 0.00 2.74
40 41 2.433970 GGAGAGAAGATAAGCAGGCTGT 59.566 50.000 17.16 0.00 0.00 4.40
41 42 2.224257 GGGAGAGAAGATAAGCAGGCTG 60.224 54.545 10.94 10.94 0.00 4.85
42 43 2.046292 GGGAGAGAAGATAAGCAGGCT 58.954 52.381 0.00 0.00 0.00 4.58
43 44 1.765314 TGGGAGAGAAGATAAGCAGGC 59.235 52.381 0.00 0.00 0.00 4.85
44 45 3.903090 AGATGGGAGAGAAGATAAGCAGG 59.097 47.826 0.00 0.00 0.00 4.85
45 46 5.305128 AGAAGATGGGAGAGAAGATAAGCAG 59.695 44.000 0.00 0.00 0.00 4.24
46 47 5.215069 AGAAGATGGGAGAGAAGATAAGCA 58.785 41.667 0.00 0.00 0.00 3.91
47 48 5.539955 AGAGAAGATGGGAGAGAAGATAAGC 59.460 44.000 0.00 0.00 0.00 3.09
48 49 7.006509 AGAGAGAAGATGGGAGAGAAGATAAG 58.993 42.308 0.00 0.00 0.00 1.73
49 50 6.921412 AGAGAGAAGATGGGAGAGAAGATAA 58.079 40.000 0.00 0.00 0.00 1.75
50 51 6.467194 GGAGAGAGAAGATGGGAGAGAAGATA 60.467 46.154 0.00 0.00 0.00 1.98
51 52 5.388654 GAGAGAGAAGATGGGAGAGAAGAT 58.611 45.833 0.00 0.00 0.00 2.40
52 53 4.386312 GGAGAGAGAAGATGGGAGAGAAGA 60.386 50.000 0.00 0.00 0.00 2.87
53 54 3.891366 GGAGAGAGAAGATGGGAGAGAAG 59.109 52.174 0.00 0.00 0.00 2.85
54 55 3.531397 AGGAGAGAGAAGATGGGAGAGAA 59.469 47.826 0.00 0.00 0.00 2.87
55 56 3.130450 AGGAGAGAGAAGATGGGAGAGA 58.870 50.000 0.00 0.00 0.00 3.10
56 57 3.600448 AGGAGAGAGAAGATGGGAGAG 57.400 52.381 0.00 0.00 0.00 3.20
57 58 4.344938 AAAGGAGAGAGAAGATGGGAGA 57.655 45.455 0.00 0.00 0.00 3.71
58 59 5.660864 AGTTAAAGGAGAGAGAAGATGGGAG 59.339 44.000 0.00 0.00 0.00 4.30
59 60 5.594777 AGTTAAAGGAGAGAGAAGATGGGA 58.405 41.667 0.00 0.00 0.00 4.37
60 61 5.948742 AGTTAAAGGAGAGAGAAGATGGG 57.051 43.478 0.00 0.00 0.00 4.00
61 62 7.340743 TGTCTAGTTAAAGGAGAGAGAAGATGG 59.659 40.741 0.00 0.00 0.00 3.51
62 63 8.287439 TGTCTAGTTAAAGGAGAGAGAAGATG 57.713 38.462 0.00 0.00 0.00 2.90
63 64 8.887264 TTGTCTAGTTAAAGGAGAGAGAAGAT 57.113 34.615 0.00 0.00 0.00 2.40
64 65 8.707796 TTTGTCTAGTTAAAGGAGAGAGAAGA 57.292 34.615 0.00 0.00 0.00 2.87
65 66 8.798402 TCTTTGTCTAGTTAAAGGAGAGAGAAG 58.202 37.037 16.09 0.00 35.24 2.85
66 67 8.707796 TCTTTGTCTAGTTAAAGGAGAGAGAA 57.292 34.615 16.09 0.00 35.24 2.87
67 68 8.887264 ATCTTTGTCTAGTTAAAGGAGAGAGA 57.113 34.615 16.09 0.00 35.24 3.10
107 108 5.556915 TGCTTTTATATTATGAGACGGGGG 58.443 41.667 0.00 0.00 0.00 5.40
108 109 7.687941 AATGCTTTTATATTATGAGACGGGG 57.312 36.000 0.00 0.00 0.00 5.73
109 110 9.965824 AAAAATGCTTTTATATTATGAGACGGG 57.034 29.630 0.00 0.00 32.85 5.28
123 124 9.332502 TCTAGTGTAGTGTCAAAAATGCTTTTA 57.667 29.630 0.00 0.00 32.85 1.52
124 125 8.220755 TCTAGTGTAGTGTCAAAAATGCTTTT 57.779 30.769 0.00 0.00 35.02 2.27
125 126 7.499232 ACTCTAGTGTAGTGTCAAAAATGCTTT 59.501 33.333 0.00 0.00 0.00 3.51
126 127 6.992715 ACTCTAGTGTAGTGTCAAAAATGCTT 59.007 34.615 0.00 0.00 0.00 3.91
127 128 6.525629 ACTCTAGTGTAGTGTCAAAAATGCT 58.474 36.000 0.00 0.00 0.00 3.79
128 129 6.787085 ACTCTAGTGTAGTGTCAAAAATGC 57.213 37.500 0.00 0.00 0.00 3.56
154 155 6.987992 TCGTCCCATAATATAAGAGCGTTTTT 59.012 34.615 0.00 0.00 0.00 1.94
155 156 6.518493 TCGTCCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
156 157 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
157 158 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
158 159 5.336531 CCTTCGTCCCATAATATAAGAGCGT 60.337 44.000 0.00 0.00 0.00 5.07
159 160 5.103000 CCTTCGTCCCATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
160 161 5.187186 TCCCTTCGTCCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
161 162 6.852420 TCCCTTCGTCCCATAATATAAGAG 57.148 41.667 0.00 0.00 0.00 2.85
162 163 7.808279 ATTCCCTTCGTCCCATAATATAAGA 57.192 36.000 0.00 0.00 0.00 2.10
163 164 8.759782 ACTATTCCCTTCGTCCCATAATATAAG 58.240 37.037 0.00 0.00 0.00 1.73
164 165 8.674925 ACTATTCCCTTCGTCCCATAATATAA 57.325 34.615 0.00 0.00 0.00 0.98
165 166 8.674925 AACTATTCCCTTCGTCCCATAATATA 57.325 34.615 0.00 0.00 0.00 0.86
166 167 7.458170 AGAACTATTCCCTTCGTCCCATAATAT 59.542 37.037 0.00 0.00 0.00 1.28
167 168 6.785963 AGAACTATTCCCTTCGTCCCATAATA 59.214 38.462 0.00 0.00 0.00 0.98
168 169 5.607171 AGAACTATTCCCTTCGTCCCATAAT 59.393 40.000 0.00 0.00 0.00 1.28
169 170 4.966805 AGAACTATTCCCTTCGTCCCATAA 59.033 41.667 0.00 0.00 0.00 1.90
170 171 4.553678 AGAACTATTCCCTTCGTCCCATA 58.446 43.478 0.00 0.00 0.00 2.74
171 172 3.385115 AGAACTATTCCCTTCGTCCCAT 58.615 45.455 0.00 0.00 0.00 4.00
172 173 2.829023 AGAACTATTCCCTTCGTCCCA 58.171 47.619 0.00 0.00 0.00 4.37
173 174 3.908643 AAGAACTATTCCCTTCGTCCC 57.091 47.619 0.00 0.00 0.00 4.46
174 175 6.927936 GGTTATAAGAACTATTCCCTTCGTCC 59.072 42.308 0.00 0.00 0.00 4.79
175 176 7.652507 CAGGTTATAAGAACTATTCCCTTCGTC 59.347 40.741 0.00 0.00 0.00 4.20
176 177 7.498443 CAGGTTATAAGAACTATTCCCTTCGT 58.502 38.462 0.00 0.00 0.00 3.85
177 178 6.424207 GCAGGTTATAAGAACTATTCCCTTCG 59.576 42.308 0.00 0.00 0.00 3.79
178 179 7.510407 AGCAGGTTATAAGAACTATTCCCTTC 58.490 38.462 0.00 0.00 0.00 3.46
179 180 7.453141 AGCAGGTTATAAGAACTATTCCCTT 57.547 36.000 0.00 0.00 0.00 3.95
180 181 7.453141 AAGCAGGTTATAAGAACTATTCCCT 57.547 36.000 0.00 0.00 0.00 4.20
181 182 9.220767 CATAAGCAGGTTATAAGAACTATTCCC 57.779 37.037 4.52 0.00 29.54 3.97
182 183 9.780186 ACATAAGCAGGTTATAAGAACTATTCC 57.220 33.333 4.52 0.00 29.54 3.01
185 186 9.765795 GTGACATAAGCAGGTTATAAGAACTAT 57.234 33.333 4.52 0.00 29.54 2.12
186 187 8.202137 GGTGACATAAGCAGGTTATAAGAACTA 58.798 37.037 4.52 0.00 29.54 2.24
187 188 7.048512 GGTGACATAAGCAGGTTATAAGAACT 58.951 38.462 4.52 0.00 29.54 3.01
188 189 6.260271 GGGTGACATAAGCAGGTTATAAGAAC 59.740 42.308 4.52 2.39 29.54 3.01
189 190 6.157994 AGGGTGACATAAGCAGGTTATAAGAA 59.842 38.462 4.52 0.00 29.54 2.52
190 191 5.665812 AGGGTGACATAAGCAGGTTATAAGA 59.334 40.000 4.52 0.00 29.54 2.10
191 192 5.930135 AGGGTGACATAAGCAGGTTATAAG 58.070 41.667 4.52 0.00 29.54 1.73
192 193 5.968676 AGGGTGACATAAGCAGGTTATAA 57.031 39.130 4.52 0.00 29.54 0.98
193 194 6.013725 CCATAGGGTGACATAAGCAGGTTATA 60.014 42.308 4.52 0.00 29.54 0.98
194 195 5.221925 CCATAGGGTGACATAAGCAGGTTAT 60.222 44.000 0.00 0.00 0.00 1.89
195 196 4.102524 CCATAGGGTGACATAAGCAGGTTA 59.897 45.833 0.00 0.00 0.00 2.85
196 197 3.117888 CCATAGGGTGACATAAGCAGGTT 60.118 47.826 0.00 0.00 0.00 3.50
197 198 2.439507 CCATAGGGTGACATAAGCAGGT 59.560 50.000 0.00 0.00 0.00 4.00
198 199 3.131709 CCATAGGGTGACATAAGCAGG 57.868 52.381 0.00 0.00 0.00 4.85
210 211 8.127481 GTTCGACCGAATAAGTACCATAGGGT 62.127 46.154 3.71 3.71 42.66 4.34
211 212 3.822735 TCGACCGAATAAGTACCATAGGG 59.177 47.826 0.00 0.00 41.29 3.53
212 213 5.218139 GTTCGACCGAATAAGTACCATAGG 58.782 45.833 8.14 0.00 36.45 2.57
213 214 5.218139 GGTTCGACCGAATAAGTACCATAG 58.782 45.833 8.14 0.00 36.45 2.23
214 215 5.186996 GGTTCGACCGAATAAGTACCATA 57.813 43.478 8.14 0.00 36.45 2.74
215 216 4.050852 GGTTCGACCGAATAAGTACCAT 57.949 45.455 8.14 0.00 36.45 3.55
216 217 3.508744 GGTTCGACCGAATAAGTACCA 57.491 47.619 8.14 0.00 36.45 3.25
228 229 2.087344 GAAGCCATTCGGTTCGACC 58.913 57.895 0.00 0.00 39.07 4.79
237 238 1.806542 ACATGTGACACGAAGCCATTC 59.193 47.619 0.00 0.00 0.00 2.67
238 239 1.536766 CACATGTGACACGAAGCCATT 59.463 47.619 21.64 0.00 0.00 3.16
239 240 1.159285 CACATGTGACACGAAGCCAT 58.841 50.000 21.64 0.00 0.00 4.40
240 241 0.179059 ACACATGTGACACGAAGCCA 60.179 50.000 31.94 0.00 0.00 4.75
241 242 2.616969 ACACATGTGACACGAAGCC 58.383 52.632 31.94 0.00 0.00 4.35
286 287 9.138596 TCCTTGGCAACTAATAAAACTTTAGTT 57.861 29.630 0.00 3.62 45.92 2.24
287 288 8.700439 TCCTTGGCAACTAATAAAACTTTAGT 57.300 30.769 0.00 0.00 40.68 2.24
290 291 9.923143 GTATTCCTTGGCAACTAATAAAACTTT 57.077 29.630 0.00 0.00 37.61 2.66
291 292 9.084533 TGTATTCCTTGGCAACTAATAAAACTT 57.915 29.630 0.00 0.00 37.61 2.66
292 293 8.644374 TGTATTCCTTGGCAACTAATAAAACT 57.356 30.769 0.00 0.00 37.61 2.66
293 294 9.869757 ATTGTATTCCTTGGCAACTAATAAAAC 57.130 29.630 11.73 5.18 37.61 2.43
300 301 9.991906 GTACTATATTGTATTCCTTGGCAACTA 57.008 33.333 0.00 0.00 37.61 2.24
301 302 8.714906 AGTACTATATTGTATTCCTTGGCAACT 58.285 33.333 0.00 0.00 37.61 3.16
302 303 8.904099 AGTACTATATTGTATTCCTTGGCAAC 57.096 34.615 0.00 0.00 0.00 4.17
303 304 9.555727 GAAGTACTATATTGTATTCCTTGGCAA 57.444 33.333 0.00 0.00 0.00 4.52
304 305 8.154856 GGAAGTACTATATTGTATTCCTTGGCA 58.845 37.037 19.20 0.00 33.05 4.92
305 306 7.606839 GGGAAGTACTATATTGTATTCCTTGGC 59.393 40.741 22.15 12.15 34.42 4.52
306 307 8.881262 AGGGAAGTACTATATTGTATTCCTTGG 58.119 37.037 22.15 0.00 34.42 3.61
307 308 9.930693 GAGGGAAGTACTATATTGTATTCCTTG 57.069 37.037 22.15 0.00 34.42 3.61
308 309 9.102453 GGAGGGAAGTACTATATTGTATTCCTT 57.898 37.037 22.15 18.94 34.42 3.36
309 310 7.396623 CGGAGGGAAGTACTATATTGTATTCCT 59.603 40.741 22.15 13.55 34.42 3.36
310 311 7.178097 ACGGAGGGAAGTACTATATTGTATTCC 59.822 40.741 18.75 18.75 33.91 3.01
311 312 8.120140 ACGGAGGGAAGTACTATATTGTATTC 57.880 38.462 0.00 5.89 0.00 1.75
312 313 8.488308 AACGGAGGGAAGTACTATATTGTATT 57.512 34.615 0.00 0.00 0.00 1.89
313 314 7.178097 GGAACGGAGGGAAGTACTATATTGTAT 59.822 40.741 0.00 0.00 0.00 2.29
314 315 6.491403 GGAACGGAGGGAAGTACTATATTGTA 59.509 42.308 0.00 0.00 0.00 2.41
315 316 5.303845 GGAACGGAGGGAAGTACTATATTGT 59.696 44.000 0.00 0.00 0.00 2.71
316 317 5.539193 AGGAACGGAGGGAAGTACTATATTG 59.461 44.000 0.00 0.00 0.00 1.90
317 318 5.713807 AGGAACGGAGGGAAGTACTATATT 58.286 41.667 0.00 0.00 0.00 1.28
318 319 5.336491 AGGAACGGAGGGAAGTACTATAT 57.664 43.478 0.00 0.00 0.00 0.86
319 320 4.803329 AGGAACGGAGGGAAGTACTATA 57.197 45.455 0.00 0.00 0.00 1.31
320 321 3.684408 AGGAACGGAGGGAAGTACTAT 57.316 47.619 0.00 0.00 0.00 2.12
321 322 4.591321 TTAGGAACGGAGGGAAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
322 323 3.463048 TTAGGAACGGAGGGAAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
323 324 4.750021 ATTTAGGAACGGAGGGAAGTAC 57.250 45.455 0.00 0.00 0.00 2.73
324 325 6.138263 TCATATTTAGGAACGGAGGGAAGTA 58.862 40.000 0.00 0.00 0.00 2.24
325 326 4.966805 TCATATTTAGGAACGGAGGGAAGT 59.033 41.667 0.00 0.00 0.00 3.01
326 327 5.070580 ACTCATATTTAGGAACGGAGGGAAG 59.929 44.000 0.00 0.00 0.00 3.46
327 328 4.966805 ACTCATATTTAGGAACGGAGGGAA 59.033 41.667 0.00 0.00 0.00 3.97
328 329 4.553678 ACTCATATTTAGGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
329 330 4.957684 ACTCATATTTAGGAACGGAGGG 57.042 45.455 0.00 0.00 0.00 4.30
330 331 7.625828 AAAAACTCATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
356 357 9.862371 GAGAGAGTAGTTCATTTGAAATGTCTA 57.138 33.333 16.62 15.91 35.58 2.59
357 358 7.821846 GGAGAGAGTAGTTCATTTGAAATGTCT 59.178 37.037 16.62 16.73 35.58 3.41
358 359 7.201478 CGGAGAGAGTAGTTCATTTGAAATGTC 60.201 40.741 16.62 11.39 35.58 3.06
359 360 6.591834 CGGAGAGAGTAGTTCATTTGAAATGT 59.408 38.462 16.62 1.69 35.58 2.71
360 361 6.591834 ACGGAGAGAGTAGTTCATTTGAAATG 59.408 38.462 11.54 11.54 35.58 2.32
361 362 6.702329 ACGGAGAGAGTAGTTCATTTGAAAT 58.298 36.000 0.00 0.00 35.58 2.17
362 363 6.097915 ACGGAGAGAGTAGTTCATTTGAAA 57.902 37.500 0.00 0.00 35.58 2.69
363 364 5.336531 GGACGGAGAGAGTAGTTCATTTGAA 60.337 44.000 0.00 0.00 0.00 2.69
364 365 4.158025 GGACGGAGAGAGTAGTTCATTTGA 59.842 45.833 0.00 0.00 0.00 2.69
365 366 4.425520 GGACGGAGAGAGTAGTTCATTTG 58.574 47.826 0.00 0.00 0.00 2.32
366 367 3.128938 CGGACGGAGAGAGTAGTTCATTT 59.871 47.826 0.00 0.00 0.00 2.32
367 368 2.683867 CGGACGGAGAGAGTAGTTCATT 59.316 50.000 0.00 0.00 0.00 2.57
368 369 2.290464 CGGACGGAGAGAGTAGTTCAT 58.710 52.381 0.00 0.00 0.00 2.57
369 370 1.678123 CCGGACGGAGAGAGTAGTTCA 60.678 57.143 4.40 0.00 37.50 3.18
370 371 1.015868 CCGGACGGAGAGAGTAGTTC 58.984 60.000 4.40 0.00 37.50 3.01
371 372 0.617413 TCCGGACGGAGAGAGTAGTT 59.383 55.000 9.76 0.00 39.76 2.24
372 373 0.617413 TTCCGGACGGAGAGAGTAGT 59.383 55.000 13.64 0.00 46.06 2.73
373 374 1.747709 TTTCCGGACGGAGAGAGTAG 58.252 55.000 13.64 0.00 46.06 2.57
374 375 2.431954 ATTTCCGGACGGAGAGAGTA 57.568 50.000 13.64 0.00 46.06 2.59
375 376 2.022934 GTATTTCCGGACGGAGAGAGT 58.977 52.381 13.64 0.00 46.06 3.24
376 377 2.299521 AGTATTTCCGGACGGAGAGAG 58.700 52.381 13.64 0.00 46.06 3.20
377 378 2.426024 CAAGTATTTCCGGACGGAGAGA 59.574 50.000 13.64 3.93 46.06 3.10
378 379 2.165845 ACAAGTATTTCCGGACGGAGAG 59.834 50.000 13.64 0.20 46.06 3.20
379 380 2.165030 GACAAGTATTTCCGGACGGAGA 59.835 50.000 13.64 10.06 46.06 3.71
380 381 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
381 382 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
382 383 1.066716 TGGACAAGTATTTCCGGACGG 60.067 52.381 1.83 3.96 34.24 4.79
383 384 2.268298 CTGGACAAGTATTTCCGGACG 58.732 52.381 1.83 0.00 40.34 4.79
384 385 2.629051 CCTGGACAAGTATTTCCGGAC 58.371 52.381 1.83 0.00 40.34 4.79
385 386 1.557832 CCCTGGACAAGTATTTCCGGA 59.442 52.381 0.00 0.00 40.34 5.14
386 387 1.557832 TCCCTGGACAAGTATTTCCGG 59.442 52.381 0.00 0.00 37.94 5.14
387 388 3.343941 TTCCCTGGACAAGTATTTCCG 57.656 47.619 0.00 0.00 34.24 4.30
401 402 8.874744 ATACATCTAAATTCATCCATTCCCTG 57.125 34.615 0.00 0.00 0.00 4.45
402 403 9.887862 AAATACATCTAAATTCATCCATTCCCT 57.112 29.630 0.00 0.00 0.00 4.20
451 452 9.878667 TGAAAATACTTGTCGTAGAAATGGATA 57.121 29.630 0.00 0.00 39.69 2.59
452 453 8.786826 TGAAAATACTTGTCGTAGAAATGGAT 57.213 30.769 0.00 0.00 39.69 3.41
453 454 8.610248 TTGAAAATACTTGTCGTAGAAATGGA 57.390 30.769 0.00 0.00 39.69 3.41
454 455 9.113876 GTTTGAAAATACTTGTCGTAGAAATGG 57.886 33.333 0.00 0.00 39.69 3.16
455 456 8.827599 CGTTTGAAAATACTTGTCGTAGAAATG 58.172 33.333 0.00 0.00 39.69 2.32
456 457 8.013378 CCGTTTGAAAATACTTGTCGTAGAAAT 58.987 33.333 0.00 0.00 39.69 2.17
457 458 7.224362 TCCGTTTGAAAATACTTGTCGTAGAAA 59.776 33.333 0.00 0.00 39.69 2.52
458 459 6.700960 TCCGTTTGAAAATACTTGTCGTAGAA 59.299 34.615 0.00 0.00 39.69 2.10
459 460 6.215121 TCCGTTTGAAAATACTTGTCGTAGA 58.785 36.000 0.00 0.00 0.00 2.59
460 461 6.400727 CCTCCGTTTGAAAATACTTGTCGTAG 60.401 42.308 0.00 0.00 0.00 3.51
461 462 5.406175 CCTCCGTTTGAAAATACTTGTCGTA 59.594 40.000 0.00 0.00 0.00 3.43
462 463 4.212636 CCTCCGTTTGAAAATACTTGTCGT 59.787 41.667 0.00 0.00 0.00 4.34
463 464 4.378046 CCCTCCGTTTGAAAATACTTGTCG 60.378 45.833 0.00 0.00 0.00 4.35
464 465 4.758165 TCCCTCCGTTTGAAAATACTTGTC 59.242 41.667 0.00 0.00 0.00 3.18
465 466 4.721132 TCCCTCCGTTTGAAAATACTTGT 58.279 39.130 0.00 0.00 0.00 3.16
466 467 4.760204 ACTCCCTCCGTTTGAAAATACTTG 59.240 41.667 0.00 0.00 0.00 3.16
467 468 4.981812 ACTCCCTCCGTTTGAAAATACTT 58.018 39.130 0.00 0.00 0.00 2.24
468 469 4.635699 ACTCCCTCCGTTTGAAAATACT 57.364 40.909 0.00 0.00 0.00 2.12
469 470 5.240121 TGTACTCCCTCCGTTTGAAAATAC 58.760 41.667 0.00 0.00 0.00 1.89
470 471 5.486735 TGTACTCCCTCCGTTTGAAAATA 57.513 39.130 0.00 0.00 0.00 1.40
471 472 4.360951 TGTACTCCCTCCGTTTGAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
472 473 3.842007 TGTACTCCCTCCGTTTGAAAA 57.158 42.857 0.00 0.00 0.00 2.29
473 474 3.118334 TGTTGTACTCCCTCCGTTTGAAA 60.118 43.478 0.00 0.00 0.00 2.69
474 475 2.435069 TGTTGTACTCCCTCCGTTTGAA 59.565 45.455 0.00 0.00 0.00 2.69
475 476 2.040939 TGTTGTACTCCCTCCGTTTGA 58.959 47.619 0.00 0.00 0.00 2.69
476 477 2.536761 TGTTGTACTCCCTCCGTTTG 57.463 50.000 0.00 0.00 0.00 2.93
477 478 3.367703 CGTATGTTGTACTCCCTCCGTTT 60.368 47.826 0.00 0.00 0.00 3.60
478 479 2.165030 CGTATGTTGTACTCCCTCCGTT 59.835 50.000 0.00 0.00 0.00 4.44
479 480 1.747355 CGTATGTTGTACTCCCTCCGT 59.253 52.381 0.00 0.00 0.00 4.69
480 481 1.066605 CCGTATGTTGTACTCCCTCCG 59.933 57.143 0.00 0.00 0.00 4.63
481 482 2.381911 TCCGTATGTTGTACTCCCTCC 58.618 52.381 0.00 0.00 0.00 4.30
482 483 3.383825 ACATCCGTATGTTGTACTCCCTC 59.616 47.826 0.00 0.00 44.07 4.30
483 484 3.371965 ACATCCGTATGTTGTACTCCCT 58.628 45.455 0.00 0.00 44.07 4.20
484 485 3.814005 ACATCCGTATGTTGTACTCCC 57.186 47.619 0.00 0.00 44.07 4.30
520 521 9.575783 GAAGAAAAACGAGTGAATCTATACTCT 57.424 33.333 0.00 0.00 40.82 3.24
521 522 9.355215 TGAAGAAAAACGAGTGAATCTATACTC 57.645 33.333 0.00 0.00 39.86 2.59
522 523 9.877178 ATGAAGAAAAACGAGTGAATCTATACT 57.123 29.630 0.00 0.00 0.00 2.12
554 555 9.622004 CTTTTTAGAGATTACAACGAGTGACTA 57.378 33.333 0.00 0.00 0.00 2.59
555 556 8.358148 TCTTTTTAGAGATTACAACGAGTGACT 58.642 33.333 0.00 0.00 0.00 3.41
556 557 8.426251 GTCTTTTTAGAGATTACAACGAGTGAC 58.574 37.037 0.00 0.00 0.00 3.67
557 558 8.139350 TGTCTTTTTAGAGATTACAACGAGTGA 58.861 33.333 0.00 0.00 0.00 3.41
558 559 8.294341 TGTCTTTTTAGAGATTACAACGAGTG 57.706 34.615 0.00 0.00 0.00 3.51
579 580 9.799106 CTCCCTTGTTTCCAAATATATATGTCT 57.201 33.333 0.00 0.00 0.00 3.41
580 581 9.574516 ACTCCCTTGTTTCCAAATATATATGTC 57.425 33.333 0.00 0.00 0.00 3.06
585 586 9.574516 GATGTACTCCCTTGTTTCCAAATATAT 57.425 33.333 0.00 0.00 0.00 0.86
586 587 7.713507 CGATGTACTCCCTTGTTTCCAAATATA 59.286 37.037 0.00 0.00 0.00 0.86
587 588 6.542370 CGATGTACTCCCTTGTTTCCAAATAT 59.458 38.462 0.00 0.00 0.00 1.28
588 589 5.878116 CGATGTACTCCCTTGTTTCCAAATA 59.122 40.000 0.00 0.00 0.00 1.40
589 590 4.700213 CGATGTACTCCCTTGTTTCCAAAT 59.300 41.667 0.00 0.00 0.00 2.32
590 591 4.069304 CGATGTACTCCCTTGTTTCCAAA 58.931 43.478 0.00 0.00 0.00 3.28
591 592 3.670625 CGATGTACTCCCTTGTTTCCAA 58.329 45.455 0.00 0.00 0.00 3.53
592 593 2.614481 GCGATGTACTCCCTTGTTTCCA 60.614 50.000 0.00 0.00 0.00 3.53
593 594 2.007608 GCGATGTACTCCCTTGTTTCC 58.992 52.381 0.00 0.00 0.00 3.13
594 595 2.415512 GTGCGATGTACTCCCTTGTTTC 59.584 50.000 0.00 0.00 0.00 2.78
595 596 2.224426 TGTGCGATGTACTCCCTTGTTT 60.224 45.455 0.00 0.00 0.00 2.83
596 597 1.346395 TGTGCGATGTACTCCCTTGTT 59.654 47.619 0.00 0.00 0.00 2.83
597 598 0.973632 TGTGCGATGTACTCCCTTGT 59.026 50.000 0.00 0.00 0.00 3.16
598 599 1.935873 CATGTGCGATGTACTCCCTTG 59.064 52.381 0.00 0.00 0.00 3.61
599 600 1.743772 GCATGTGCGATGTACTCCCTT 60.744 52.381 0.00 0.00 0.00 3.95
600 601 0.179073 GCATGTGCGATGTACTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
601 602 2.311294 GCATGTGCGATGTACTCCC 58.689 57.895 0.00 0.00 0.00 4.30
620 621 1.743958 TGCACCTTCTAGACGCTAGAC 59.256 52.381 13.79 5.68 0.00 2.59
621 622 2.017782 CTGCACCTTCTAGACGCTAGA 58.982 52.381 11.11 11.11 0.00 2.43
622 623 1.535015 GCTGCACCTTCTAGACGCTAG 60.535 57.143 0.00 7.36 0.00 3.42
623 624 0.456221 GCTGCACCTTCTAGACGCTA 59.544 55.000 0.00 0.00 0.00 4.26
624 625 1.216710 GCTGCACCTTCTAGACGCT 59.783 57.895 0.00 0.00 0.00 5.07
636 637 3.499737 CGTCCCGATTGGCTGCAC 61.500 66.667 0.50 0.00 0.00 4.57
677 678 6.261381 TCGAAGCCTTTATTGTTACTGTTTGT 59.739 34.615 0.00 0.00 0.00 2.83
828 829 3.382832 CTGGACGGGAAGGCGTCT 61.383 66.667 0.00 0.00 35.67 4.18
966 976 0.701147 TGCTGAGTGAGAGGGAGAGA 59.299 55.000 0.00 0.00 0.00 3.10
978 993 1.380403 CGTCGGAGAGGATGCTGAGT 61.380 60.000 0.00 0.00 46.48 3.41
982 1010 3.532155 GCCGTCGGAGAGGATGCT 61.532 66.667 17.49 0.00 46.48 3.79
984 1012 1.300465 CATGCCGTCGGAGAGGATG 60.300 63.158 17.49 0.52 46.48 3.51
988 1016 4.899239 GGCCATGCCGTCGGAGAG 62.899 72.222 17.49 2.67 39.62 3.20
1143 1171 1.743252 CAGGAAGGGAGCTGCGAAC 60.743 63.158 0.00 0.00 0.00 3.95
1181 1209 1.002900 GAGAGATGGAGAGAGAACGCG 60.003 57.143 3.53 3.53 0.00 6.01
1182 1210 1.002900 CGAGAGATGGAGAGAGAACGC 60.003 57.143 0.00 0.00 0.00 4.84
1183 1211 2.543848 CTCGAGAGATGGAGAGAGAACG 59.456 54.545 6.58 0.00 40.84 3.95
1184 1212 3.312421 CACTCGAGAGATGGAGAGAGAAC 59.688 52.174 21.68 0.00 40.84 3.01
1185 1213 3.540617 CACTCGAGAGATGGAGAGAGAA 58.459 50.000 21.68 0.00 40.84 2.87
1186 1214 2.158827 CCACTCGAGAGATGGAGAGAGA 60.159 54.545 21.68 0.00 39.56 3.10
1187 1215 2.158827 TCCACTCGAGAGATGGAGAGAG 60.159 54.545 21.68 0.00 40.44 3.20
1188 1216 1.840635 TCCACTCGAGAGATGGAGAGA 59.159 52.381 21.68 0.00 40.44 3.10
1189 1217 2.340210 TCCACTCGAGAGATGGAGAG 57.660 55.000 21.68 0.00 40.44 3.20
1190 1218 3.304911 AATCCACTCGAGAGATGGAGA 57.695 47.619 23.04 8.39 44.79 3.71
1191 1219 5.720371 ATAAATCCACTCGAGAGATGGAG 57.280 43.478 23.04 3.62 44.79 3.86
1192 1220 5.363868 ACAATAAATCCACTCGAGAGATGGA 59.636 40.000 21.58 21.58 45.26 3.41
1193 1221 5.464722 CACAATAAATCCACTCGAGAGATGG 59.535 44.000 21.68 16.73 40.84 3.51
1194 1222 5.464722 CCACAATAAATCCACTCGAGAGATG 59.535 44.000 21.68 7.02 40.84 2.90
1195 1223 5.129485 ACCACAATAAATCCACTCGAGAGAT 59.871 40.000 21.68 17.21 40.84 2.75
1196 1224 4.466370 ACCACAATAAATCCACTCGAGAGA 59.534 41.667 21.68 15.61 39.12 3.10
1197 1225 4.759782 ACCACAATAAATCCACTCGAGAG 58.240 43.478 21.68 11.80 0.00 3.20
1221 1249 8.689061 ACTATTCCAGTTTCCGTTTTAAGTTTT 58.311 29.630 0.00 0.00 31.59 2.43
1222 1250 8.229253 ACTATTCCAGTTTCCGTTTTAAGTTT 57.771 30.769 0.00 0.00 31.59 2.66
1223 1251 7.812690 ACTATTCCAGTTTCCGTTTTAAGTT 57.187 32.000 0.00 0.00 31.59 2.66
1246 1274 5.049405 GGTGCACAATCAAGGCTACATATAC 60.049 44.000 20.43 0.00 0.00 1.47
1247 1275 5.063204 GGTGCACAATCAAGGCTACATATA 58.937 41.667 20.43 0.00 0.00 0.86
1248 1276 3.885297 GGTGCACAATCAAGGCTACATAT 59.115 43.478 20.43 0.00 0.00 1.78
1386 1435 1.865725 CGAACAACGATTTCTTCCGC 58.134 50.000 0.00 0.00 45.77 5.54
1389 1438 1.458064 TCGGCGAACAACGATTTCTTC 59.542 47.619 7.35 0.00 45.77 2.87
1445 1498 1.097547 CGATGGACCACTGCCCATTC 61.098 60.000 0.00 0.00 42.80 2.67
1467 1520 1.441515 TAAGCACGCACGTCGACTC 60.442 57.895 14.70 1.68 41.67 3.36
1468 1521 1.728426 GTAAGCACGCACGTCGACT 60.728 57.895 14.70 0.00 41.67 4.18
1469 1522 1.728426 AGTAAGCACGCACGTCGAC 60.728 57.895 5.18 5.18 41.67 4.20
1470 1523 1.728074 CAGTAAGCACGCACGTCGA 60.728 57.895 13.06 0.00 41.67 4.20
1471 1524 1.272784 TTCAGTAAGCACGCACGTCG 61.273 55.000 0.00 5.97 45.38 5.12
1472 1525 1.068474 ATTCAGTAAGCACGCACGTC 58.932 50.000 0.00 0.00 0.00 4.34
1473 1526 0.790207 CATTCAGTAAGCACGCACGT 59.210 50.000 0.00 0.00 0.00 4.49
1506 1568 9.562408 TGGTGTAACTGAGTTTAATTTGATGTA 57.438 29.630 1.97 0.00 36.74 2.29
1603 1677 4.214545 CACCCAAGTCAGCAATTTAACGTA 59.785 41.667 0.00 0.00 0.00 3.57
1611 1686 1.608590 CGTTTCACCCAAGTCAGCAAT 59.391 47.619 0.00 0.00 0.00 3.56
1674 1749 1.228657 GCCTTCCAGAACCACACGAC 61.229 60.000 0.00 0.00 0.00 4.34
1766 1841 1.531840 GGCCTCTATCGCCTCCTCA 60.532 63.158 0.00 0.00 43.48 3.86
1876 1951 6.373005 TTGAACAGATTTCCCTGTGAGATA 57.627 37.500 0.00 0.00 45.82 1.98
1895 1971 2.559698 TGCAAGAATCGACCCTTGAA 57.440 45.000 24.44 15.86 41.56 2.69
1902 1978 5.906285 GCTTAGAATTGATGCAAGAATCGAC 59.094 40.000 0.00 0.00 0.00 4.20
1910 1986 7.718314 AGACATATCAGCTTAGAATTGATGCAA 59.282 33.333 0.00 0.00 33.81 4.08
1925 2005 8.151141 TGAAGATCAAAATGAGACATATCAGC 57.849 34.615 0.00 0.00 31.44 4.26
1957 2037 0.671796 TCTGCTCGTCGACTTTTCCA 59.328 50.000 14.70 2.87 0.00 3.53
2050 2130 0.620556 ACTTCTTGCCATGGGATCGT 59.379 50.000 15.13 2.70 0.00 3.73
2218 2298 1.474330 CCAAGGTTACCCTGCAATCC 58.526 55.000 0.00 0.00 41.56 3.01
2283 2372 3.005472 CGATAGTCTGGGCCTTTCGATAA 59.995 47.826 4.53 0.00 36.07 1.75
2344 2433 2.408271 TGTCTGCCCTGCTTAATCAG 57.592 50.000 0.00 0.00 0.00 2.90
2391 2480 2.097629 TGAGATTCTGCGAAGTAGGACG 59.902 50.000 0.00 0.00 41.75 4.79
2412 2501 0.324943 CCTTGTCGTCATCCAACCCT 59.675 55.000 0.00 0.00 0.00 4.34
2475 2564 1.909700 AGGGCGATGAAACATGTGTT 58.090 45.000 0.00 0.00 40.50 3.32
2654 2743 6.634837 CACACACAAATGCACGTTAAAAGATA 59.365 34.615 0.00 0.00 0.00 1.98
2870 2971 9.071276 GTAATCCAAATGACAATATCACATCCT 57.929 33.333 0.00 0.00 41.24 3.24
2879 2980 9.461312 AGCAAGTTAGTAATCCAAATGACAATA 57.539 29.630 0.00 0.00 0.00 1.90
2888 2989 8.580720 TGCAATTAAAGCAAGTTAGTAATCCAA 58.419 29.630 3.73 0.00 39.39 3.53
2949 3050 1.488812 TGTTACACTCAGTGTTGGGCT 59.511 47.619 17.55 0.00 45.08 5.19
2950 3051 1.961793 TGTTACACTCAGTGTTGGGC 58.038 50.000 17.55 4.88 45.08 5.36
2951 3052 5.391950 GCAATATGTTACACTCAGTGTTGGG 60.392 44.000 17.55 0.00 45.08 4.12
2983 3085 6.097270 TGGCTCCTGAATGGATGAAATTTTAG 59.903 38.462 0.00 0.00 45.16 1.85
2999 3101 2.667418 GCTCAAGCTGGCTCCTGA 59.333 61.111 0.00 0.00 38.21 3.86
3060 3173 3.555956 CACTTATCCGTATTCAGCACCAC 59.444 47.826 0.00 0.00 0.00 4.16
3074 3189 8.112016 TGAGTGTATATAGTGCTCACTTATCC 57.888 38.462 7.92 0.00 42.54 2.59
3081 3196 9.750125 CTATTTTGTGAGTGTATATAGTGCTCA 57.250 33.333 6.69 6.69 34.30 4.26
3127 3243 8.557029 TGTGTGTGTATATACTGATCTCTTACG 58.443 37.037 13.89 0.00 0.00 3.18
3158 3274 4.923281 GTCTTCTTGCAGTGTTTGTGTTTT 59.077 37.500 0.00 0.00 0.00 2.43
3276 3686 9.199982 CATTGCAGAGTTCACATTCTTTATTTT 57.800 29.630 0.00 0.00 0.00 1.82
3284 3694 3.439476 AGAGCATTGCAGAGTTCACATTC 59.561 43.478 11.91 0.00 0.00 2.67
3293 3703 3.084039 TGGGTTAAAGAGCATTGCAGAG 58.916 45.455 11.91 0.00 0.00 3.35
3309 3719 3.143728 GTTGAAATCCGTACTGTGGGTT 58.856 45.455 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.