Multiple sequence alignment - TraesCS1D01G324800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G324800 chr1D 100.000 3023 0 0 1 3023 416984507 416987529 0.000000e+00 5583.0
1 TraesCS1D01G324800 chr1D 92.743 813 51 5 2212 3020 416933045 416933853 0.000000e+00 1168.0
2 TraesCS1D01G324800 chr1D 89.610 693 42 9 933 1618 416931475 416932144 0.000000e+00 854.0
3 TraesCS1D01G324800 chr1D 88.190 525 39 9 1532 2041 415145540 415145024 3.330000e-169 604.0
4 TraesCS1D01G324800 chr1D 85.981 535 49 9 1532 2040 414941226 414940692 1.580000e-152 549.0
5 TraesCS1D01G324800 chr1D 85.767 541 49 11 1532 2044 415053267 415052727 5.700000e-152 547.0
6 TraesCS1D01G324800 chr1D 82.675 456 47 13 1004 1459 414941847 414941424 2.850000e-100 375.0
7 TraesCS1D01G324800 chr1D 82.456 456 48 11 1004 1459 415053888 415053465 1.320000e-98 370.0
8 TraesCS1D01G324800 chr1A 92.271 2083 122 15 950 3023 514256905 514258957 0.000000e+00 2918.0
9 TraesCS1D01G324800 chr1A 88.676 521 43 8 1532 2036 512461207 512460687 3.310000e-174 621.0
10 TraesCS1D01G324800 chr1A 82.237 456 48 12 1004 1459 511636222 511635800 2.220000e-96 363.0
11 TraesCS1D01G324800 chr1A 81.223 458 53 21 1079 1534 512462034 512461608 3.730000e-89 339.0
12 TraesCS1D01G324800 chr1A 85.340 191 22 3 2620 2806 512457897 512457709 3.080000e-45 193.0
13 TraesCS1D01G324800 chr1B 91.582 1473 93 19 1560 3017 563787775 563789231 0.000000e+00 2004.0
14 TraesCS1D01G324800 chr1B 89.314 1619 92 27 932 2518 563847240 563848809 0.000000e+00 1956.0
15 TraesCS1D01G324800 chr1B 90.378 582 37 4 932 1506 563787215 563787784 0.000000e+00 747.0
16 TraesCS1D01G324800 chr1B 85.661 537 50 11 1532 2041 560788655 560788119 9.530000e-150 540.0
17 TraesCS1D01G324800 chr1B 86.233 523 37 9 2503 3023 563849085 563849574 4.440000e-148 534.0
18 TraesCS1D01G324800 chr1B 82.752 545 47 19 1532 2040 561156994 561156461 2.770000e-120 442.0
19 TraesCS1D01G324800 chr1B 91.223 319 22 4 1 316 392740838 392741153 2.150000e-116 429.0
20 TraesCS1D01G324800 chr1B 91.167 317 19 5 620 933 392741319 392741629 3.600000e-114 422.0
21 TraesCS1D01G324800 chr1B 80.263 456 54 15 1006 1459 560789251 560788830 8.140000e-81 311.0
22 TraesCS1D01G324800 chr1B 80.838 167 8 10 463 625 392741150 392741296 3.190000e-20 110.0
23 TraesCS1D01G324800 chrUn 89.948 965 66 18 1560 2518 305658870 305659809 0.000000e+00 1216.0
24 TraesCS1D01G324800 chrUn 90.185 917 59 18 1608 2518 342934775 342935666 0.000000e+00 1166.0
25 TraesCS1D01G324800 chrUn 91.753 582 29 4 932 1506 305658313 305658882 0.000000e+00 791.0
26 TraesCS1D01G324800 chrUn 89.459 351 27 8 2676 3023 7340211 7339868 4.630000e-118 435.0
27 TraesCS1D01G324800 chrUn 92.042 289 16 2 932 1213 394106665 394106377 1.690000e-107 399.0
28 TraesCS1D01G324800 chrUn 88.832 197 19 2 210 406 433958409 433958602 3.890000e-59 239.0
29 TraesCS1D01G324800 chrUn 90.244 123 9 2 2503 2625 305660085 305660204 1.120000e-34 158.0
30 TraesCS1D01G324800 chrUn 90.244 123 9 2 2503 2625 342935942 342936061 1.120000e-34 158.0
31 TraesCS1D01G324800 chrUn 88.119 101 10 2 1 101 433958226 433958324 5.290000e-23 119.0
32 TraesCS1D01G324800 chr2A 91.850 319 19 5 1 316 742298562 742298876 3.580000e-119 438.0
33 TraesCS1D01G324800 chr2A 90.312 320 23 5 620 935 742299039 742299354 2.170000e-111 412.0
34 TraesCS1D01G324800 chr2A 80.838 167 5 11 463 625 742298873 742299016 4.120000e-19 106.0
35 TraesCS1D01G324800 chr6B 88.832 197 19 2 210 406 558744530 558744723 3.890000e-59 239.0
36 TraesCS1D01G324800 chr6B 88.832 197 19 2 210 406 558827113 558827306 3.890000e-59 239.0
37 TraesCS1D01G324800 chr6B 89.109 101 9 2 1 101 558744347 558744445 1.140000e-24 124.0
38 TraesCS1D01G324800 chr6B 89.109 101 9 2 1 101 558826930 558827028 1.140000e-24 124.0
39 TraesCS1D01G324800 chr2B 89.691 97 8 2 5 101 746032564 746032470 4.090000e-24 122.0
40 TraesCS1D01G324800 chr7D 86.076 79 8 2 474 549 597300088 597300010 6.950000e-12 82.4
41 TraesCS1D01G324800 chr7D 88.525 61 3 3 2044 2104 454486746 454486802 1.500000e-08 71.3
42 TraesCS1D01G324800 chr3D 87.302 63 4 3 2044 2106 5372151 5372209 5.410000e-08 69.4
43 TraesCS1D01G324800 chr3D 87.302 63 3 3 2043 2104 11420988 11421046 1.950000e-07 67.6
44 TraesCS1D01G324800 chr3A 87.302 63 4 3 2044 2106 93902727 93902785 5.410000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G324800 chr1D 416984507 416987529 3022 False 5583.000000 5583 100.000000 1 3023 1 chr1D.!!$F1 3022
1 TraesCS1D01G324800 chr1D 416931475 416933853 2378 False 1011.000000 1168 91.176500 933 3020 2 chr1D.!!$F2 2087
2 TraesCS1D01G324800 chr1D 415145024 415145540 516 True 604.000000 604 88.190000 1532 2041 1 chr1D.!!$R1 509
3 TraesCS1D01G324800 chr1D 414940692 414941847 1155 True 462.000000 549 84.328000 1004 2040 2 chr1D.!!$R2 1036
4 TraesCS1D01G324800 chr1D 415052727 415053888 1161 True 458.500000 547 84.111500 1004 2044 2 chr1D.!!$R3 1040
5 TraesCS1D01G324800 chr1A 514256905 514258957 2052 False 2918.000000 2918 92.271000 950 3023 1 chr1A.!!$F1 2073
6 TraesCS1D01G324800 chr1A 512457709 512462034 4325 True 384.333333 621 85.079667 1079 2806 3 chr1A.!!$R2 1727
7 TraesCS1D01G324800 chr1B 563787215 563789231 2016 False 1375.500000 2004 90.980000 932 3017 2 chr1B.!!$F2 2085
8 TraesCS1D01G324800 chr1B 563847240 563849574 2334 False 1245.000000 1956 87.773500 932 3023 2 chr1B.!!$F3 2091
9 TraesCS1D01G324800 chr1B 561156461 561156994 533 True 442.000000 442 82.752000 1532 2040 1 chr1B.!!$R1 508
10 TraesCS1D01G324800 chr1B 560788119 560789251 1132 True 425.500000 540 82.962000 1006 2041 2 chr1B.!!$R2 1035
11 TraesCS1D01G324800 chr1B 392740838 392741629 791 False 320.333333 429 87.742667 1 933 3 chr1B.!!$F1 932
12 TraesCS1D01G324800 chrUn 305658313 305660204 1891 False 721.666667 1216 90.648333 932 2625 3 chrUn.!!$F1 1693
13 TraesCS1D01G324800 chrUn 342934775 342936061 1286 False 662.000000 1166 90.214500 1608 2625 2 chrUn.!!$F2 1017
14 TraesCS1D01G324800 chr2A 742298562 742299354 792 False 318.666667 438 87.666667 1 935 3 chr2A.!!$F1 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 869 0.030773 GATCCGTACGATGCAGAGCA 59.969 55.0 18.76 0.0 44.86 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2495 5837 0.536233 TGCTTTTTCCCAGCGCAGTA 60.536 50.0 11.47 0.0 40.45 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.980423 GCTTGGAGAGAACCCTGACT 59.020 55.000 0.00 0.00 0.00 3.41
62 63 6.012745 ACCTTCCTCAAAGCATAAGTTTGAT 58.987 36.000 0.00 0.00 41.80 2.57
67 68 7.765307 TCCTCAAAGCATAAGTTTGATCATTC 58.235 34.615 0.00 0.00 41.80 2.67
137 138 5.349824 GTGAAAAGCTGTCACTTAGAAGG 57.650 43.478 18.98 0.00 41.80 3.46
143 144 4.888917 AGCTGTCACTTAGAAGGAAGTTC 58.111 43.478 0.00 0.00 37.57 3.01
152 153 2.243810 AGAAGGAAGTTCGAGTCTGCT 58.756 47.619 0.00 0.00 40.49 4.24
231 235 8.895932 ACTTAACGAACTGCATTATCAAAATC 57.104 30.769 0.00 0.00 0.00 2.17
257 261 7.445096 CCAGTGATGATATAATAAAGGTGCACA 59.555 37.037 20.43 0.00 0.00 4.57
275 279 9.284968 AGGTGCACAGGTAATAATATTTACATC 57.715 33.333 20.43 0.00 34.42 3.06
318 322 9.236006 AGATGATTAACTTGTGCTTCTAATTGT 57.764 29.630 0.00 0.00 0.00 2.71
319 323 9.495754 GATGATTAACTTGTGCTTCTAATTGTC 57.504 33.333 0.00 0.00 0.00 3.18
320 324 7.816640 TGATTAACTTGTGCTTCTAATTGTCC 58.183 34.615 0.00 0.00 0.00 4.02
321 325 6.569179 TTAACTTGTGCTTCTAATTGTCCC 57.431 37.500 0.00 0.00 0.00 4.46
322 326 3.421844 ACTTGTGCTTCTAATTGTCCCC 58.578 45.455 0.00 0.00 0.00 4.81
323 327 3.074538 ACTTGTGCTTCTAATTGTCCCCT 59.925 43.478 0.00 0.00 0.00 4.79
324 328 3.806949 TGTGCTTCTAATTGTCCCCTT 57.193 42.857 0.00 0.00 0.00 3.95
325 329 3.686016 TGTGCTTCTAATTGTCCCCTTC 58.314 45.455 0.00 0.00 0.00 3.46
326 330 3.330701 TGTGCTTCTAATTGTCCCCTTCT 59.669 43.478 0.00 0.00 0.00 2.85
327 331 3.691609 GTGCTTCTAATTGTCCCCTTCTG 59.308 47.826 0.00 0.00 0.00 3.02
328 332 2.685388 GCTTCTAATTGTCCCCTTCTGC 59.315 50.000 0.00 0.00 0.00 4.26
329 333 3.282885 CTTCTAATTGTCCCCTTCTGCC 58.717 50.000 0.00 0.00 0.00 4.85
330 334 2.274542 TCTAATTGTCCCCTTCTGCCA 58.725 47.619 0.00 0.00 0.00 4.92
331 335 2.852449 TCTAATTGTCCCCTTCTGCCAT 59.148 45.455 0.00 0.00 0.00 4.40
332 336 2.629017 AATTGTCCCCTTCTGCCATT 57.371 45.000 0.00 0.00 0.00 3.16
333 337 3.756082 AATTGTCCCCTTCTGCCATTA 57.244 42.857 0.00 0.00 0.00 1.90
334 338 3.756082 ATTGTCCCCTTCTGCCATTAA 57.244 42.857 0.00 0.00 0.00 1.40
335 339 2.806945 TGTCCCCTTCTGCCATTAAG 57.193 50.000 0.00 0.00 0.00 1.85
336 340 1.992557 TGTCCCCTTCTGCCATTAAGT 59.007 47.619 0.00 0.00 0.00 2.24
337 341 2.290896 TGTCCCCTTCTGCCATTAAGTG 60.291 50.000 0.00 0.00 0.00 3.16
338 342 1.992557 TCCCCTTCTGCCATTAAGTGT 59.007 47.619 0.00 0.00 0.00 3.55
339 343 2.094675 CCCCTTCTGCCATTAAGTGTG 58.905 52.381 0.00 0.00 0.00 3.82
340 344 2.290896 CCCCTTCTGCCATTAAGTGTGA 60.291 50.000 0.00 0.00 0.00 3.58
341 345 2.749621 CCCTTCTGCCATTAAGTGTGAC 59.250 50.000 0.00 0.00 0.00 3.67
342 346 3.411446 CCTTCTGCCATTAAGTGTGACA 58.589 45.455 0.00 0.00 0.00 3.58
343 347 3.820467 CCTTCTGCCATTAAGTGTGACAA 59.180 43.478 0.00 0.00 0.00 3.18
344 348 4.320494 CCTTCTGCCATTAAGTGTGACAAC 60.320 45.833 0.00 0.00 0.00 3.32
345 349 4.085357 TCTGCCATTAAGTGTGACAACT 57.915 40.909 0.00 0.00 0.00 3.16
346 350 4.460263 TCTGCCATTAAGTGTGACAACTT 58.540 39.130 0.00 0.00 42.89 2.66
347 351 4.887071 TCTGCCATTAAGTGTGACAACTTT 59.113 37.500 5.91 0.00 40.77 2.66
348 352 5.359576 TCTGCCATTAAGTGTGACAACTTTT 59.640 36.000 5.91 0.00 40.77 2.27
349 353 5.971763 TGCCATTAAGTGTGACAACTTTTT 58.028 33.333 5.91 0.00 40.77 1.94
350 354 6.039616 TGCCATTAAGTGTGACAACTTTTTC 58.960 36.000 5.91 0.00 40.77 2.29
351 355 6.127479 TGCCATTAAGTGTGACAACTTTTTCT 60.127 34.615 5.91 0.00 40.77 2.52
352 356 6.756542 GCCATTAAGTGTGACAACTTTTTCTT 59.243 34.615 5.91 0.00 40.77 2.52
353 357 7.277760 GCCATTAAGTGTGACAACTTTTTCTTT 59.722 33.333 5.91 0.00 40.77 2.52
354 358 8.807581 CCATTAAGTGTGACAACTTTTTCTTTC 58.192 33.333 5.91 0.00 40.77 2.62
355 359 9.352784 CATTAAGTGTGACAACTTTTTCTTTCA 57.647 29.630 5.91 0.00 40.77 2.69
356 360 8.964420 TTAAGTGTGACAACTTTTTCTTTCAG 57.036 30.769 5.91 0.00 40.77 3.02
357 361 6.575162 AGTGTGACAACTTTTTCTTTCAGT 57.425 33.333 0.00 0.00 0.00 3.41
358 362 6.381801 AGTGTGACAACTTTTTCTTTCAGTG 58.618 36.000 0.00 0.00 0.00 3.66
359 363 5.060940 GTGTGACAACTTTTTCTTTCAGTGC 59.939 40.000 0.00 0.00 0.00 4.40
360 364 5.160641 GTGACAACTTTTTCTTTCAGTGCA 58.839 37.500 0.00 0.00 0.00 4.57
361 365 5.060940 GTGACAACTTTTTCTTTCAGTGCAC 59.939 40.000 9.40 9.40 0.00 4.57
362 366 4.494484 ACAACTTTTTCTTTCAGTGCACC 58.506 39.130 14.63 0.00 0.00 5.01
363 367 3.420839 ACTTTTTCTTTCAGTGCACCG 57.579 42.857 14.63 2.63 0.00 4.94
364 368 3.013921 ACTTTTTCTTTCAGTGCACCGA 58.986 40.909 14.63 5.79 0.00 4.69
365 369 3.632145 ACTTTTTCTTTCAGTGCACCGAT 59.368 39.130 14.63 0.00 0.00 4.18
366 370 3.624326 TTTTCTTTCAGTGCACCGATG 57.376 42.857 14.63 5.65 0.00 3.84
367 371 2.542020 TTCTTTCAGTGCACCGATGA 57.458 45.000 14.63 8.31 0.00 2.92
368 372 2.768253 TCTTTCAGTGCACCGATGAT 57.232 45.000 14.63 0.00 0.00 2.45
369 373 2.349590 TCTTTCAGTGCACCGATGATG 58.650 47.619 14.63 3.98 0.00 3.07
370 374 2.028203 TCTTTCAGTGCACCGATGATGA 60.028 45.455 14.63 6.67 0.00 2.92
371 375 2.014335 TTCAGTGCACCGATGATGAG 57.986 50.000 14.63 0.00 0.00 2.90
372 376 1.185315 TCAGTGCACCGATGATGAGA 58.815 50.000 14.63 0.00 0.00 3.27
373 377 1.758862 TCAGTGCACCGATGATGAGAT 59.241 47.619 14.63 0.00 0.00 2.75
374 378 2.133553 CAGTGCACCGATGATGAGATC 58.866 52.381 14.63 0.00 0.00 2.75
375 379 2.037901 AGTGCACCGATGATGAGATCT 58.962 47.619 14.63 0.00 0.00 2.75
376 380 2.433604 AGTGCACCGATGATGAGATCTT 59.566 45.455 14.63 0.00 0.00 2.40
377 381 2.543012 GTGCACCGATGATGAGATCTTG 59.457 50.000 5.22 0.00 0.00 3.02
378 382 2.431782 TGCACCGATGATGAGATCTTGA 59.568 45.455 0.00 0.00 0.00 3.02
379 383 2.799412 GCACCGATGATGAGATCTTGAC 59.201 50.000 0.00 0.00 0.00 3.18
380 384 3.739209 GCACCGATGATGAGATCTTGACA 60.739 47.826 0.00 0.00 0.00 3.58
381 385 4.629092 CACCGATGATGAGATCTTGACAT 58.371 43.478 0.00 3.01 0.00 3.06
382 386 5.055144 CACCGATGATGAGATCTTGACATT 58.945 41.667 0.00 0.00 0.00 2.71
383 387 6.218746 CACCGATGATGAGATCTTGACATTA 58.781 40.000 0.00 0.00 0.00 1.90
384 388 6.145209 CACCGATGATGAGATCTTGACATTAC 59.855 42.308 0.00 0.00 0.00 1.89
385 389 6.041409 ACCGATGATGAGATCTTGACATTACT 59.959 38.462 0.00 0.00 0.00 2.24
386 390 6.927936 CCGATGATGAGATCTTGACATTACTT 59.072 38.462 0.00 0.00 0.00 2.24
387 391 7.095732 CCGATGATGAGATCTTGACATTACTTG 60.096 40.741 0.00 0.00 0.00 3.16
388 392 7.437565 CGATGATGAGATCTTGACATTACTTGT 59.562 37.037 0.00 0.00 42.79 3.16
389 393 7.838771 TGATGAGATCTTGACATTACTTGTG 57.161 36.000 0.00 0.00 39.18 3.33
390 394 7.389232 TGATGAGATCTTGACATTACTTGTGT 58.611 34.615 0.00 0.00 39.18 3.72
391 395 8.531146 TGATGAGATCTTGACATTACTTGTGTA 58.469 33.333 0.00 0.00 39.18 2.90
392 396 8.709386 ATGAGATCTTGACATTACTTGTGTAC 57.291 34.615 0.00 0.00 39.18 2.90
393 397 7.666623 TGAGATCTTGACATTACTTGTGTACA 58.333 34.615 0.00 0.00 39.18 2.90
394 398 8.314021 TGAGATCTTGACATTACTTGTGTACAT 58.686 33.333 0.00 0.00 39.18 2.29
395 399 9.155975 GAGATCTTGACATTACTTGTGTACATT 57.844 33.333 0.00 0.00 39.18 2.71
396 400 9.507329 AGATCTTGACATTACTTGTGTACATTT 57.493 29.630 0.00 0.00 39.18 2.32
397 401 9.760660 GATCTTGACATTACTTGTGTACATTTC 57.239 33.333 0.00 0.00 39.18 2.17
398 402 8.094798 TCTTGACATTACTTGTGTACATTTCC 57.905 34.615 0.00 0.00 39.18 3.13
399 403 7.717436 TCTTGACATTACTTGTGTACATTTCCA 59.283 33.333 0.00 0.00 39.18 3.53
400 404 7.809546 TGACATTACTTGTGTACATTTCCAA 57.190 32.000 0.00 0.00 39.18 3.53
401 405 8.402798 TGACATTACTTGTGTACATTTCCAAT 57.597 30.769 0.00 0.00 39.18 3.16
402 406 9.508642 TGACATTACTTGTGTACATTTCCAATA 57.491 29.630 0.00 0.00 39.18 1.90
407 411 9.562408 TTACTTGTGTACATTTCCAATAACTGA 57.438 29.630 0.00 0.00 0.00 3.41
408 412 8.458573 ACTTGTGTACATTTCCAATAACTGAA 57.541 30.769 0.00 0.00 0.00 3.02
409 413 9.077885 ACTTGTGTACATTTCCAATAACTGAAT 57.922 29.630 0.00 0.00 0.00 2.57
444 448 2.957491 CCACTGTTGGTGCAGAAAAA 57.043 45.000 0.00 0.00 44.08 1.94
511 515 7.934855 AAAGATATTTTCTCTGACATGTGCT 57.065 32.000 1.15 0.00 31.78 4.40
512 516 6.922247 AGATATTTTCTCTGACATGTGCTG 57.078 37.500 1.15 0.00 0.00 4.41
513 517 6.413052 AGATATTTTCTCTGACATGTGCTGT 58.587 36.000 1.15 0.00 42.15 4.40
514 518 7.559486 AGATATTTTCTCTGACATGTGCTGTA 58.441 34.615 1.15 0.00 38.54 2.74
515 519 8.209584 AGATATTTTCTCTGACATGTGCTGTAT 58.790 33.333 1.15 0.00 38.54 2.29
516 520 5.868043 TTTTCTCTGACATGTGCTGTATG 57.132 39.130 1.15 0.00 38.54 2.39
517 521 3.531934 TCTCTGACATGTGCTGTATGG 57.468 47.619 1.15 0.00 38.54 2.74
518 522 3.099141 TCTCTGACATGTGCTGTATGGA 58.901 45.455 1.15 0.00 38.54 3.41
519 523 3.708121 TCTCTGACATGTGCTGTATGGAT 59.292 43.478 1.15 0.00 38.54 3.41
520 524 4.895297 TCTCTGACATGTGCTGTATGGATA 59.105 41.667 1.15 0.00 38.54 2.59
531 538 6.102663 GTGCTGTATGGATATACTAGGCAAG 58.897 44.000 0.00 0.00 39.47 4.01
532 539 5.112686 GCTGTATGGATATACTAGGCAAGC 58.887 45.833 0.00 0.00 39.90 4.01
533 540 5.665459 CTGTATGGATATACTAGGCAAGCC 58.335 45.833 2.02 2.02 39.90 4.35
534 541 5.090845 TGTATGGATATACTAGGCAAGCCA 58.909 41.667 14.40 0.00 39.90 4.75
535 542 4.833478 ATGGATATACTAGGCAAGCCAG 57.167 45.455 14.40 10.85 38.92 4.85
536 543 2.303022 TGGATATACTAGGCAAGCCAGC 59.697 50.000 14.40 0.00 38.92 4.85
565 572 1.133025 GAGCAACAACAGCGGCATATT 59.867 47.619 1.45 0.00 37.01 1.28
566 573 2.354510 GAGCAACAACAGCGGCATATTA 59.645 45.455 1.45 0.00 37.01 0.98
567 574 2.951642 AGCAACAACAGCGGCATATTAT 59.048 40.909 1.45 0.00 37.01 1.28
568 575 4.133820 AGCAACAACAGCGGCATATTATA 58.866 39.130 1.45 0.00 37.01 0.98
569 576 4.761739 AGCAACAACAGCGGCATATTATAT 59.238 37.500 1.45 0.00 37.01 0.86
570 577 5.937540 AGCAACAACAGCGGCATATTATATA 59.062 36.000 1.45 0.00 37.01 0.86
571 578 6.021596 GCAACAACAGCGGCATATTATATAC 58.978 40.000 1.45 0.00 0.00 1.47
589 596 4.617253 ATACTACACAGGACACAGCAAA 57.383 40.909 0.00 0.00 0.00 3.68
609 619 1.813786 ACACTTCAGTACGAGAGGAGC 59.186 52.381 7.33 0.00 0.00 4.70
627 637 3.961414 GCTGGGTGGGGAAACGGA 61.961 66.667 0.00 0.00 0.00 4.69
629 639 3.894547 CTGGGTGGGGAAACGGACG 62.895 68.421 0.00 0.00 0.00 4.79
630 640 4.710167 GGGTGGGGAAACGGACGG 62.710 72.222 0.00 0.00 0.00 4.79
634 644 4.994471 GGGGAAACGGACGGCGTT 62.994 66.667 16.19 0.00 0.00 4.84
635 645 3.719144 GGGAAACGGACGGCGTTG 61.719 66.667 16.19 13.09 0.00 4.10
636 646 3.719144 GGAAACGGACGGCGTTGG 61.719 66.667 16.19 12.05 0.00 3.77
637 647 2.968697 GAAACGGACGGCGTTGGT 60.969 61.111 16.19 12.79 0.00 3.67
638 648 3.231324 GAAACGGACGGCGTTGGTG 62.231 63.158 16.19 7.11 0.00 4.17
646 656 4.778143 GGCGTTGGTGGAGGCGAT 62.778 66.667 0.00 0.00 0.00 4.58
647 657 2.746277 GCGTTGGTGGAGGCGATT 60.746 61.111 0.00 0.00 0.00 3.34
648 658 3.039202 GCGTTGGTGGAGGCGATTG 62.039 63.158 0.00 0.00 0.00 2.67
649 659 2.877691 GTTGGTGGAGGCGATTGC 59.122 61.111 0.00 0.00 41.71 3.56
650 660 1.971167 GTTGGTGGAGGCGATTGCA 60.971 57.895 7.38 0.00 45.35 4.08
651 661 1.675310 TTGGTGGAGGCGATTGCAG 60.675 57.895 7.38 0.00 45.35 4.41
652 662 2.825836 GGTGGAGGCGATTGCAGG 60.826 66.667 7.38 0.00 45.35 4.85
653 663 3.512516 GTGGAGGCGATTGCAGGC 61.513 66.667 7.38 0.00 45.35 4.85
655 665 4.838152 GGAGGCGATTGCAGGCGA 62.838 66.667 13.50 0.00 45.35 5.54
656 666 3.567797 GAGGCGATTGCAGGCGAC 61.568 66.667 13.50 10.82 45.35 5.19
693 703 4.610714 GGCGGAGGAGGCGAATCC 62.611 72.222 0.00 0.00 39.89 3.01
694 704 3.849951 GCGGAGGAGGCGAATCCA 61.850 66.667 8.81 0.00 42.26 3.41
695 705 2.419198 CGGAGGAGGCGAATCCAG 59.581 66.667 8.81 0.00 42.26 3.86
696 706 2.825264 GGAGGAGGCGAATCCAGG 59.175 66.667 8.81 0.00 42.26 4.45
697 707 2.110006 GAGGAGGCGAATCCAGGC 59.890 66.667 8.81 0.00 42.26 4.85
698 708 2.688666 AGGAGGCGAATCCAGGCA 60.689 61.111 8.81 0.00 42.26 4.75
699 709 2.203126 GGAGGCGAATCCAGGCAG 60.203 66.667 1.72 0.00 39.34 4.85
700 710 2.899339 GAGGCGAATCCAGGCAGC 60.899 66.667 0.00 0.00 37.29 5.25
701 711 4.845580 AGGCGAATCCAGGCAGCG 62.846 66.667 0.00 0.00 37.29 5.18
742 752 4.131088 GGCAGTCCGGGTCGAGTC 62.131 72.222 0.00 0.00 0.00 3.36
743 753 4.131088 GCAGTCCGGGTCGAGTCC 62.131 72.222 0.00 0.00 0.00 3.85
744 754 3.450115 CAGTCCGGGTCGAGTCCC 61.450 72.222 0.00 0.83 43.78 4.46
745 755 4.755507 AGTCCGGGTCGAGTCCCC 62.756 72.222 0.00 2.52 44.32 4.81
747 757 4.304413 TCCGGGTCGAGTCCCCAA 62.304 66.667 10.02 0.00 44.32 4.12
748 758 4.078516 CCGGGTCGAGTCCCCAAC 62.079 72.222 10.02 0.00 44.32 3.77
749 759 4.430765 CGGGTCGAGTCCCCAACG 62.431 72.222 10.02 0.00 44.32 4.10
750 760 4.754667 GGGTCGAGTCCCCAACGC 62.755 72.222 4.73 0.00 42.15 4.84
751 761 4.754667 GGTCGAGTCCCCAACGCC 62.755 72.222 0.00 0.00 0.00 5.68
752 762 3.692406 GTCGAGTCCCCAACGCCT 61.692 66.667 0.00 0.00 0.00 5.52
753 763 3.691342 TCGAGTCCCCAACGCCTG 61.691 66.667 0.00 0.00 0.00 4.85
754 764 4.760047 CGAGTCCCCAACGCCTGG 62.760 72.222 0.00 0.00 45.97 4.45
761 771 2.597340 CCAACGCCTGGGATCCAT 59.403 61.111 15.23 0.00 42.17 3.41
762 772 1.825191 CCAACGCCTGGGATCCATG 60.825 63.158 15.23 5.12 42.17 3.66
763 773 2.124151 AACGCCTGGGATCCATGC 60.124 61.111 15.23 11.49 40.82 4.06
766 776 2.433446 GCCTGGGATCCATGCGAT 59.567 61.111 15.23 0.00 35.66 4.58
767 777 1.679311 GCCTGGGATCCATGCGATA 59.321 57.895 15.23 0.00 35.66 2.92
768 778 0.674895 GCCTGGGATCCATGCGATAC 60.675 60.000 15.23 0.00 35.66 2.24
769 779 0.979665 CCTGGGATCCATGCGATACT 59.020 55.000 15.23 0.00 31.63 2.12
770 780 1.066573 CCTGGGATCCATGCGATACTC 60.067 57.143 15.23 0.00 31.63 2.59
771 781 1.898472 CTGGGATCCATGCGATACTCT 59.102 52.381 15.23 0.00 31.63 3.24
772 782 1.620323 TGGGATCCATGCGATACTCTG 59.380 52.381 15.23 0.00 31.63 3.35
773 783 1.066573 GGGATCCATGCGATACTCTGG 60.067 57.143 15.23 0.00 31.63 3.86
774 784 1.895798 GGATCCATGCGATACTCTGGA 59.104 52.381 6.95 0.00 41.76 3.86
775 785 2.300152 GGATCCATGCGATACTCTGGAA 59.700 50.000 6.95 0.00 40.94 3.53
776 786 3.244215 GGATCCATGCGATACTCTGGAAA 60.244 47.826 6.95 0.00 40.94 3.13
777 787 3.459232 TCCATGCGATACTCTGGAAAG 57.541 47.619 0.00 0.00 34.91 2.62
778 788 2.103094 TCCATGCGATACTCTGGAAAGG 59.897 50.000 0.00 0.00 34.91 3.11
779 789 2.158900 CCATGCGATACTCTGGAAAGGT 60.159 50.000 0.00 0.00 0.00 3.50
780 790 3.069586 CCATGCGATACTCTGGAAAGGTA 59.930 47.826 0.00 0.00 0.00 3.08
781 791 4.302455 CATGCGATACTCTGGAAAGGTAG 58.698 47.826 0.00 0.00 0.00 3.18
782 792 2.693591 TGCGATACTCTGGAAAGGTAGG 59.306 50.000 0.00 0.00 0.00 3.18
783 793 2.957006 GCGATACTCTGGAAAGGTAGGA 59.043 50.000 0.00 0.00 0.00 2.94
784 794 3.004944 GCGATACTCTGGAAAGGTAGGAG 59.995 52.174 0.00 0.00 0.00 3.69
785 795 3.004944 CGATACTCTGGAAAGGTAGGAGC 59.995 52.174 0.00 0.00 0.00 4.70
786 796 1.574263 ACTCTGGAAAGGTAGGAGCC 58.426 55.000 0.00 0.00 0.00 4.70
787 797 0.461961 CTCTGGAAAGGTAGGAGCCG 59.538 60.000 0.00 0.00 0.00 5.52
788 798 0.040646 TCTGGAAAGGTAGGAGCCGA 59.959 55.000 0.00 0.00 0.00 5.54
789 799 0.461961 CTGGAAAGGTAGGAGCCGAG 59.538 60.000 0.00 0.00 0.00 4.63
790 800 1.144276 GGAAAGGTAGGAGCCGAGC 59.856 63.158 0.00 0.00 0.00 5.03
791 801 1.144276 GAAAGGTAGGAGCCGAGCC 59.856 63.158 0.00 0.00 0.00 4.70
792 802 2.630592 GAAAGGTAGGAGCCGAGCCG 62.631 65.000 0.00 0.00 0.00 5.52
793 803 3.657038 AAGGTAGGAGCCGAGCCGA 62.657 63.158 0.00 0.00 0.00 5.54
794 804 2.913060 GGTAGGAGCCGAGCCGAT 60.913 66.667 0.00 0.00 0.00 4.18
795 805 2.646143 GTAGGAGCCGAGCCGATC 59.354 66.667 0.00 0.00 0.00 3.69
796 806 2.194212 GTAGGAGCCGAGCCGATCA 61.194 63.158 0.00 0.00 0.00 2.92
797 807 1.455032 TAGGAGCCGAGCCGATCAA 60.455 57.895 0.00 0.00 0.00 2.57
798 808 1.456196 TAGGAGCCGAGCCGATCAAG 61.456 60.000 0.00 0.00 0.00 3.02
799 809 2.964389 GAGCCGAGCCGATCAAGC 60.964 66.667 0.00 0.00 0.00 4.01
800 810 4.537433 AGCCGAGCCGATCAAGCC 62.537 66.667 1.22 0.00 0.00 4.35
801 811 4.537433 GCCGAGCCGATCAAGCCT 62.537 66.667 1.22 0.00 0.00 4.58
802 812 2.587194 CCGAGCCGATCAAGCCTG 60.587 66.667 1.22 0.00 0.00 4.85
803 813 2.587194 CGAGCCGATCAAGCCTGG 60.587 66.667 1.22 0.00 0.00 4.45
804 814 2.903357 GAGCCGATCAAGCCTGGA 59.097 61.111 0.00 0.00 0.00 3.86
805 815 1.227497 GAGCCGATCAAGCCTGGAG 60.227 63.158 0.00 0.00 0.00 3.86
806 816 2.899339 GCCGATCAAGCCTGGAGC 60.899 66.667 0.00 0.00 44.25 4.70
807 817 2.203126 CCGATCAAGCCTGGAGCC 60.203 66.667 0.00 0.00 45.47 4.70
808 818 2.587194 CGATCAAGCCTGGAGCCG 60.587 66.667 0.00 0.00 45.47 5.52
809 819 2.903357 GATCAAGCCTGGAGCCGA 59.097 61.111 0.00 0.00 45.47 5.54
810 820 1.227497 GATCAAGCCTGGAGCCGAG 60.227 63.158 0.00 0.00 45.47 4.63
811 821 3.397613 ATCAAGCCTGGAGCCGAGC 62.398 63.158 0.00 0.00 45.47 5.03
812 822 4.399395 CAAGCCTGGAGCCGAGCA 62.399 66.667 0.00 0.00 45.47 4.26
813 823 3.640407 AAGCCTGGAGCCGAGCAA 61.640 61.111 0.00 0.00 45.47 3.91
814 824 3.909086 AAGCCTGGAGCCGAGCAAC 62.909 63.158 0.00 0.00 45.47 4.17
816 826 4.379243 CCTGGAGCCGAGCAACGT 62.379 66.667 0.00 0.00 40.78 3.99
817 827 2.357517 CTGGAGCCGAGCAACGTT 60.358 61.111 0.00 0.00 40.78 3.99
818 828 1.961277 CTGGAGCCGAGCAACGTTT 60.961 57.895 0.00 0.00 40.78 3.60
819 829 2.175184 CTGGAGCCGAGCAACGTTTG 62.175 60.000 0.00 0.00 40.78 2.93
820 830 2.556287 GAGCCGAGCAACGTTTGG 59.444 61.111 0.00 0.00 40.78 3.28
821 831 2.966309 GAGCCGAGCAACGTTTGGG 61.966 63.158 0.00 0.00 40.78 4.12
822 832 2.975799 GCCGAGCAACGTTTGGGA 60.976 61.111 0.00 0.00 40.78 4.37
823 833 2.548295 GCCGAGCAACGTTTGGGAA 61.548 57.895 0.00 0.00 40.78 3.97
824 834 1.281656 CCGAGCAACGTTTGGGAAC 59.718 57.895 0.00 0.00 40.78 3.62
825 835 1.164041 CCGAGCAACGTTTGGGAACT 61.164 55.000 0.00 0.00 40.78 3.01
826 836 0.041312 CGAGCAACGTTTGGGAACTG 60.041 55.000 0.00 0.00 37.22 3.16
827 837 1.305201 GAGCAACGTTTGGGAACTGA 58.695 50.000 0.00 0.00 33.51 3.41
828 838 1.002792 GAGCAACGTTTGGGAACTGAC 60.003 52.381 0.00 0.00 33.51 3.51
829 839 0.316689 GCAACGTTTGGGAACTGACG 60.317 55.000 0.00 0.00 42.33 4.35
831 841 1.011333 AACGTTTGGGAACTGACGTG 58.989 50.000 0.00 0.00 46.36 4.49
832 842 0.812412 ACGTTTGGGAACTGACGTGG 60.812 55.000 0.00 0.00 45.72 4.94
833 843 0.531090 CGTTTGGGAACTGACGTGGA 60.531 55.000 0.00 0.00 35.58 4.02
834 844 1.226746 GTTTGGGAACTGACGTGGAG 58.773 55.000 0.00 0.00 32.91 3.86
835 845 0.107831 TTTGGGAACTGACGTGGAGG 59.892 55.000 0.00 0.00 0.00 4.30
836 846 0.761323 TTGGGAACTGACGTGGAGGA 60.761 55.000 0.00 0.00 0.00 3.71
837 847 1.185618 TGGGAACTGACGTGGAGGAG 61.186 60.000 0.00 0.00 0.00 3.69
838 848 0.898789 GGGAACTGACGTGGAGGAGA 60.899 60.000 0.00 0.00 0.00 3.71
839 849 0.244178 GGAACTGACGTGGAGGAGAC 59.756 60.000 0.00 0.00 0.00 3.36
840 850 0.109689 GAACTGACGTGGAGGAGACG 60.110 60.000 0.00 0.00 42.62 4.18
841 851 0.536687 AACTGACGTGGAGGAGACGA 60.537 55.000 0.00 0.00 39.21 4.20
842 852 0.322636 ACTGACGTGGAGGAGACGAT 60.323 55.000 0.00 0.00 39.21 3.73
843 853 0.378962 CTGACGTGGAGGAGACGATC 59.621 60.000 0.00 0.00 39.21 3.69
852 862 3.749936 GGAGACGATCCGTACGATG 57.250 57.895 18.76 5.66 41.37 3.84
853 863 0.385723 GGAGACGATCCGTACGATGC 60.386 60.000 18.76 3.97 41.37 3.91
854 864 0.306840 GAGACGATCCGTACGATGCA 59.693 55.000 18.76 0.00 41.37 3.96
855 865 0.308068 AGACGATCCGTACGATGCAG 59.692 55.000 18.76 6.51 41.37 4.41
856 866 0.306840 GACGATCCGTACGATGCAGA 59.693 55.000 18.76 5.11 41.37 4.26
857 867 0.308068 ACGATCCGTACGATGCAGAG 59.692 55.000 18.76 3.80 38.73 3.35
858 868 0.999228 CGATCCGTACGATGCAGAGC 60.999 60.000 18.76 6.75 0.00 4.09
859 869 0.030773 GATCCGTACGATGCAGAGCA 59.969 55.000 18.76 0.00 44.86 4.26
868 878 2.743060 TGCAGAGCATGTCCACGT 59.257 55.556 0.00 0.00 31.71 4.49
869 879 1.668793 TGCAGAGCATGTCCACGTG 60.669 57.895 9.08 9.08 31.71 4.49
870 880 2.393768 GCAGAGCATGTCCACGTGG 61.394 63.158 29.26 29.26 33.60 4.94
871 881 1.004560 CAGAGCATGTCCACGTGGT 60.005 57.895 32.74 13.92 45.19 4.16
872 882 1.004560 AGAGCATGTCCACGTGGTG 60.005 57.895 32.74 24.42 42.89 4.17
873 883 2.669569 AGCATGTCCACGTGGTGC 60.670 61.111 31.03 31.03 41.49 5.01
875 885 2.356913 CATGTCCACGTGGTGCGA 60.357 61.111 32.74 12.31 44.77 5.10
876 886 1.958715 CATGTCCACGTGGTGCGAA 60.959 57.895 32.74 11.90 44.77 4.70
877 887 1.003839 ATGTCCACGTGGTGCGAAT 60.004 52.632 32.74 17.15 44.77 3.34
878 888 1.019278 ATGTCCACGTGGTGCGAATC 61.019 55.000 32.74 15.54 44.77 2.52
879 889 2.431771 TCCACGTGGTGCGAATCG 60.432 61.111 32.74 5.38 44.77 3.34
880 890 2.431771 CCACGTGGTGCGAATCGA 60.432 61.111 26.95 0.00 44.77 3.59
881 891 2.024868 CCACGTGGTGCGAATCGAA 61.025 57.895 26.95 0.00 44.77 3.71
882 892 1.416049 CACGTGGTGCGAATCGAAG 59.584 57.895 6.91 0.00 44.77 3.79
883 893 1.736645 ACGTGGTGCGAATCGAAGG 60.737 57.895 6.91 0.00 44.77 3.46
884 894 2.785258 GTGGTGCGAATCGAAGGC 59.215 61.111 6.91 0.00 0.00 4.35
885 895 2.813474 TGGTGCGAATCGAAGGCG 60.813 61.111 6.91 0.00 39.35 5.52
886 896 3.564027 GGTGCGAATCGAAGGCGG 61.564 66.667 6.91 0.00 38.28 6.13
887 897 3.564027 GTGCGAATCGAAGGCGGG 61.564 66.667 6.91 0.00 38.28 6.13
888 898 4.830765 TGCGAATCGAAGGCGGGG 62.831 66.667 6.91 0.00 38.28 5.73
889 899 4.832608 GCGAATCGAAGGCGGGGT 62.833 66.667 6.91 0.00 38.28 4.95
890 900 2.125269 CGAATCGAAGGCGGGGTT 60.125 61.111 0.00 0.00 38.28 4.11
891 901 2.461110 CGAATCGAAGGCGGGGTTG 61.461 63.158 0.00 0.00 38.28 3.77
892 902 2.750237 AATCGAAGGCGGGGTTGC 60.750 61.111 0.00 0.00 38.28 4.17
893 903 3.561120 AATCGAAGGCGGGGTTGCA 62.561 57.895 0.00 0.00 38.28 4.08
894 904 3.561120 ATCGAAGGCGGGGTTGCAA 62.561 57.895 0.00 0.00 38.28 4.08
895 905 3.291383 CGAAGGCGGGGTTGCAAA 61.291 61.111 0.00 0.00 36.28 3.68
896 906 2.650778 GAAGGCGGGGTTGCAAAG 59.349 61.111 0.00 0.00 36.28 2.77
897 907 2.917227 AAGGCGGGGTTGCAAAGG 60.917 61.111 0.00 0.00 36.28 3.11
898 908 3.444818 AAGGCGGGGTTGCAAAGGA 62.445 57.895 0.00 0.00 36.28 3.36
899 909 3.373565 GGCGGGGTTGCAAAGGAG 61.374 66.667 0.00 0.00 36.28 3.69
900 910 3.373565 GCGGGGTTGCAAAGGAGG 61.374 66.667 0.00 0.00 34.15 4.30
901 911 2.434331 CGGGGTTGCAAAGGAGGA 59.566 61.111 0.00 0.00 0.00 3.71
902 912 1.675641 CGGGGTTGCAAAGGAGGAG 60.676 63.158 0.00 0.00 0.00 3.69
903 913 1.304464 GGGGTTGCAAAGGAGGAGG 60.304 63.158 0.00 0.00 0.00 4.30
904 914 1.460699 GGGTTGCAAAGGAGGAGGT 59.539 57.895 0.00 0.00 0.00 3.85
905 915 0.178961 GGGTTGCAAAGGAGGAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
906 916 1.704641 GGTTGCAAAGGAGGAGGTTT 58.295 50.000 0.00 0.00 0.00 3.27
907 917 1.341209 GGTTGCAAAGGAGGAGGTTTG 59.659 52.381 0.00 0.00 36.84 2.93
908 918 2.031870 GTTGCAAAGGAGGAGGTTTGT 58.968 47.619 0.00 0.00 36.27 2.83
909 919 1.691196 TGCAAAGGAGGAGGTTTGTG 58.309 50.000 0.00 0.00 36.27 3.33
910 920 0.315251 GCAAAGGAGGAGGTTTGTGC 59.685 55.000 0.00 0.00 36.27 4.57
911 921 0.961753 CAAAGGAGGAGGTTTGTGCC 59.038 55.000 0.00 0.00 0.00 5.01
912 922 0.537371 AAAGGAGGAGGTTTGTGCCG 60.537 55.000 0.00 0.00 0.00 5.69
913 923 2.359975 GGAGGAGGTTTGTGCCGG 60.360 66.667 0.00 0.00 0.00 6.13
914 924 2.430367 GAGGAGGTTTGTGCCGGT 59.570 61.111 1.90 0.00 0.00 5.28
915 925 1.671379 GAGGAGGTTTGTGCCGGTC 60.671 63.158 1.90 0.00 0.00 4.79
916 926 2.113243 GAGGAGGTTTGTGCCGGTCT 62.113 60.000 1.90 0.00 0.00 3.85
917 927 1.671379 GGAGGTTTGTGCCGGTCTC 60.671 63.158 1.90 0.00 0.00 3.36
918 928 1.671379 GAGGTTTGTGCCGGTCTCC 60.671 63.158 1.90 0.00 0.00 3.71
919 929 2.112297 GGTTTGTGCCGGTCTCCA 59.888 61.111 1.90 0.00 0.00 3.86
920 930 2.258726 GGTTTGTGCCGGTCTCCAC 61.259 63.158 1.90 2.71 0.00 4.02
921 931 2.112297 TTTGTGCCGGTCTCCACC 59.888 61.111 1.90 0.00 39.69 4.61
976 993 1.557443 CCGCTCGGCCGCTATAAAAG 61.557 60.000 23.51 12.25 0.00 2.27
1153 1172 4.681978 GGAAGACACGCTGGCGGT 62.682 66.667 18.99 13.22 44.69 5.68
1190 1209 2.746277 GTTGCGCCGGACCAATCT 60.746 61.111 5.05 0.00 0.00 2.40
1197 1216 1.143838 CCGGACCAATCTGATGCGA 59.856 57.895 0.00 0.00 32.26 5.10
1300 1337 2.896443 GCTCAGGAAGACCCCGAG 59.104 66.667 0.00 0.00 38.49 4.63
1484 1653 1.446272 GCAGCACCACGACTACCTC 60.446 63.158 0.00 0.00 0.00 3.85
1547 2148 1.339610 CTCCTGGCAGATAGAGGAACG 59.660 57.143 17.94 0.00 35.43 3.95
1552 2153 1.735376 GCAGATAGAGGAACGCGGGA 61.735 60.000 12.47 0.00 0.00 5.14
1613 2229 1.099295 ACGATCTCGACGCCACCATA 61.099 55.000 6.60 0.00 43.02 2.74
1645 2708 0.324943 AAGGTACGTGCATTGGCTCT 59.675 50.000 1.93 0.00 41.91 4.09
1752 2931 3.387947 GGCCGGAGAAGGGTTCGA 61.388 66.667 5.05 0.00 34.02 3.71
2314 5647 2.094957 GCGGTCATTTTCGGAAATTGGA 60.095 45.455 19.52 9.32 33.25 3.53
2402 5735 1.881973 TCTTTTAGCCAGCAAGCACTG 59.118 47.619 0.55 0.00 37.42 3.66
2446 5780 5.241064 AGAGCTACGACAAAAACAGTAGAGA 59.759 40.000 5.75 0.00 38.96 3.10
2450 5784 6.200475 GCTACGACAAAAACAGTAGAGAAAGT 59.800 38.462 5.75 0.00 38.96 2.66
2454 5788 8.938906 ACGACAAAAACAGTAGAGAAAGTTTTA 58.061 29.630 0.00 0.00 41.69 1.52
2479 5821 6.751514 TTTGAGAAACAACAGTAGAGCAAA 57.248 33.333 0.00 0.00 38.29 3.68
2495 5837 6.884280 AGAGCAAACTAAAATACACAAGCT 57.116 33.333 0.00 0.00 0.00 3.74
2497 5839 7.807680 AGAGCAAACTAAAATACACAAGCTAC 58.192 34.615 0.00 0.00 0.00 3.58
2512 6147 0.169009 GCTACTGCGCTGGGAAAAAG 59.831 55.000 18.98 2.21 0.00 2.27
2526 6452 0.482887 AAAAAGCACTAGTGGGCCCT 59.517 50.000 25.70 5.93 0.00 5.19
2589 6517 4.888239 GCATAGTGAGTAGGACTGTAGGAA 59.112 45.833 0.00 0.00 0.00 3.36
2694 6831 3.988379 TGTGTCACTTTTTGCTGATCC 57.012 42.857 4.27 0.00 0.00 3.36
2729 6866 8.752187 ACTGCTATTTTGGTGAAAACATATGAT 58.248 29.630 10.38 0.00 33.86 2.45
2748 6885 8.811378 CATATGATATGTTACCGTAGCAGAATG 58.189 37.037 4.28 0.00 32.38 2.67
2750 6887 2.684001 TGTTACCGTAGCAGAATGGG 57.316 50.000 0.00 0.00 35.86 4.00
2769 6906 8.836413 AGAATGGGTATAAACATTTGTATCGTG 58.164 33.333 5.04 0.00 37.43 4.35
2899 7037 6.070656 TCCCATGTGAGTTTCTTGATCTTTT 58.929 36.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.035458 CCTGTGTCCAGTCAGGGTTC 59.965 60.000 3.58 0.00 45.11 3.62
17 18 2.145865 CCTGTGTCCAGTCAGGGTT 58.854 57.895 3.58 0.00 45.11 4.11
62 63 4.160329 ACTACTGTTGGTCCAGAGAATGA 58.840 43.478 6.93 0.00 36.30 2.57
67 68 7.707035 GTGATTTATACTACTGTTGGTCCAGAG 59.293 40.741 0.00 0.00 36.30 3.35
137 138 1.423395 CACCAGCAGACTCGAACTTC 58.577 55.000 0.00 0.00 0.00 3.01
152 153 8.839343 CATATGATTTAGTTATCACTTGCACCA 58.161 33.333 0.00 0.00 37.36 4.17
194 198 8.387354 TGCAGTTCGTTAAGTACATATGATTTG 58.613 33.333 10.38 0.00 0.00 2.32
211 215 5.883661 CTGGATTTTGATAATGCAGTTCGT 58.116 37.500 8.52 0.00 40.03 3.85
231 235 7.445096 TGTGCACCTTTATTATATCATCACTGG 59.555 37.037 15.69 0.00 0.00 4.00
250 254 8.512138 GGATGTAAATATTATTACCTGTGCACC 58.488 37.037 15.69 0.00 35.38 5.01
252 256 9.806448 ATGGATGTAAATATTATTACCTGTGCA 57.194 29.630 0.00 0.00 35.38 4.57
304 308 3.330701 AGAAGGGGACAATTAGAAGCACA 59.669 43.478 0.00 0.00 0.00 4.57
316 320 1.992557 ACTTAATGGCAGAAGGGGACA 59.007 47.619 14.39 0.00 0.00 4.02
317 321 2.290960 ACACTTAATGGCAGAAGGGGAC 60.291 50.000 16.11 0.00 29.85 4.46
318 322 1.992557 ACACTTAATGGCAGAAGGGGA 59.007 47.619 16.11 0.00 29.85 4.81
319 323 2.094675 CACACTTAATGGCAGAAGGGG 58.905 52.381 16.11 10.23 29.85 4.79
320 324 2.749621 GTCACACTTAATGGCAGAAGGG 59.250 50.000 11.54 11.54 32.05 3.95
321 325 3.411446 TGTCACACTTAATGGCAGAAGG 58.589 45.455 14.39 7.50 0.00 3.46
322 326 4.516698 AGTTGTCACACTTAATGGCAGAAG 59.483 41.667 9.69 9.69 32.24 2.85
323 327 4.460263 AGTTGTCACACTTAATGGCAGAA 58.540 39.130 0.00 0.00 32.24 3.02
324 328 4.085357 AGTTGTCACACTTAATGGCAGA 57.915 40.909 0.00 0.00 32.24 4.26
325 329 4.836125 AAGTTGTCACACTTAATGGCAG 57.164 40.909 0.00 0.00 35.10 4.85
326 330 5.590530 AAAAGTTGTCACACTTAATGGCA 57.409 34.783 0.00 0.00 35.87 4.92
327 331 6.273071 AGAAAAAGTTGTCACACTTAATGGC 58.727 36.000 2.23 0.00 35.87 4.40
328 332 8.702163 AAAGAAAAAGTTGTCACACTTAATGG 57.298 30.769 0.00 0.00 35.87 3.16
329 333 9.352784 TGAAAGAAAAAGTTGTCACACTTAATG 57.647 29.630 0.00 0.00 35.87 1.90
330 334 9.573133 CTGAAAGAAAAAGTTGTCACACTTAAT 57.427 29.630 0.00 0.00 33.35 1.40
331 335 8.573035 ACTGAAAGAAAAAGTTGTCACACTTAA 58.427 29.630 0.00 0.00 34.68 1.85
332 336 8.020819 CACTGAAAGAAAAAGTTGTCACACTTA 58.979 33.333 0.00 0.00 34.68 2.24
333 337 6.863126 CACTGAAAGAAAAAGTTGTCACACTT 59.137 34.615 0.00 0.00 36.45 3.16
334 338 6.381801 CACTGAAAGAAAAAGTTGTCACACT 58.618 36.000 0.00 0.00 37.43 3.55
335 339 5.060940 GCACTGAAAGAAAAAGTTGTCACAC 59.939 40.000 0.00 0.00 37.43 3.82
336 340 5.160641 GCACTGAAAGAAAAAGTTGTCACA 58.839 37.500 0.00 0.00 37.43 3.58
337 341 5.060940 GTGCACTGAAAGAAAAAGTTGTCAC 59.939 40.000 10.32 0.00 37.43 3.67
338 342 5.160641 GTGCACTGAAAGAAAAAGTTGTCA 58.839 37.500 10.32 0.00 37.43 3.58
339 343 4.562789 GGTGCACTGAAAGAAAAAGTTGTC 59.437 41.667 17.98 0.00 37.43 3.18
340 344 4.494484 GGTGCACTGAAAGAAAAAGTTGT 58.506 39.130 17.98 0.00 37.43 3.32
341 345 3.547468 CGGTGCACTGAAAGAAAAAGTTG 59.453 43.478 21.59 0.00 37.43 3.16
342 346 3.442273 TCGGTGCACTGAAAGAAAAAGTT 59.558 39.130 26.02 0.00 37.43 2.66
343 347 3.013921 TCGGTGCACTGAAAGAAAAAGT 58.986 40.909 26.02 0.00 37.43 2.66
344 348 3.691049 TCGGTGCACTGAAAGAAAAAG 57.309 42.857 26.02 0.00 37.43 2.27
345 349 3.629855 TCATCGGTGCACTGAAAGAAAAA 59.370 39.130 31.03 7.18 37.43 1.94
346 350 3.210227 TCATCGGTGCACTGAAAGAAAA 58.790 40.909 31.03 7.97 37.43 2.29
347 351 2.844946 TCATCGGTGCACTGAAAGAAA 58.155 42.857 31.03 12.62 37.43 2.52
348 352 2.542020 TCATCGGTGCACTGAAAGAA 57.458 45.000 31.03 14.31 37.43 2.52
349 353 2.028203 TCATCATCGGTGCACTGAAAGA 60.028 45.455 31.03 28.44 37.43 2.52
350 354 2.349590 TCATCATCGGTGCACTGAAAG 58.650 47.619 31.03 24.71 42.29 2.62
351 355 2.028203 TCTCATCATCGGTGCACTGAAA 60.028 45.455 31.03 21.95 34.49 2.69
352 356 1.550072 TCTCATCATCGGTGCACTGAA 59.450 47.619 31.03 17.09 34.49 3.02
353 357 1.185315 TCTCATCATCGGTGCACTGA 58.815 50.000 29.69 29.69 35.43 3.41
354 358 2.133553 GATCTCATCATCGGTGCACTG 58.866 52.381 20.12 20.12 0.00 3.66
355 359 2.037901 AGATCTCATCATCGGTGCACT 58.962 47.619 17.98 0.00 0.00 4.40
356 360 2.522836 AGATCTCATCATCGGTGCAC 57.477 50.000 8.80 8.80 0.00 4.57
357 361 2.431782 TCAAGATCTCATCATCGGTGCA 59.568 45.455 0.00 0.00 0.00 4.57
358 362 2.799412 GTCAAGATCTCATCATCGGTGC 59.201 50.000 0.00 0.00 0.00 5.01
359 363 4.050852 TGTCAAGATCTCATCATCGGTG 57.949 45.455 0.00 0.00 0.00 4.94
360 364 4.952071 ATGTCAAGATCTCATCATCGGT 57.048 40.909 0.00 0.00 0.00 4.69
361 365 6.453943 AGTAATGTCAAGATCTCATCATCGG 58.546 40.000 0.00 0.00 0.00 4.18
362 366 7.437565 ACAAGTAATGTCAAGATCTCATCATCG 59.562 37.037 0.00 0.00 37.96 3.84
363 367 8.549548 CACAAGTAATGTCAAGATCTCATCATC 58.450 37.037 0.00 0.00 41.46 2.92
364 368 8.045507 ACACAAGTAATGTCAAGATCTCATCAT 58.954 33.333 0.00 0.00 41.46 2.45
365 369 7.389232 ACACAAGTAATGTCAAGATCTCATCA 58.611 34.615 0.00 0.00 41.46 3.07
366 370 7.840342 ACACAAGTAATGTCAAGATCTCATC 57.160 36.000 0.00 0.00 41.46 2.92
367 371 8.314021 TGTACACAAGTAATGTCAAGATCTCAT 58.686 33.333 0.00 0.00 41.46 2.90
368 372 7.666623 TGTACACAAGTAATGTCAAGATCTCA 58.333 34.615 0.00 0.00 41.46 3.27
369 373 8.709386 ATGTACACAAGTAATGTCAAGATCTC 57.291 34.615 0.00 0.00 41.46 2.75
370 374 9.507329 AAATGTACACAAGTAATGTCAAGATCT 57.493 29.630 0.00 0.00 41.46 2.75
371 375 9.760660 GAAATGTACACAAGTAATGTCAAGATC 57.239 33.333 0.00 0.00 41.46 2.75
372 376 8.730680 GGAAATGTACACAAGTAATGTCAAGAT 58.269 33.333 0.00 0.00 41.46 2.40
373 377 7.717436 TGGAAATGTACACAAGTAATGTCAAGA 59.283 33.333 0.00 0.00 41.46 3.02
374 378 7.870826 TGGAAATGTACACAAGTAATGTCAAG 58.129 34.615 0.00 0.00 41.46 3.02
375 379 7.809546 TGGAAATGTACACAAGTAATGTCAA 57.190 32.000 0.00 0.00 41.46 3.18
376 380 7.809546 TTGGAAATGTACACAAGTAATGTCA 57.190 32.000 0.00 0.00 41.46 3.58
381 385 9.562408 TCAGTTATTGGAAATGTACACAAGTAA 57.438 29.630 0.00 0.00 30.67 2.24
382 386 9.562408 TTCAGTTATTGGAAATGTACACAAGTA 57.438 29.630 0.00 0.00 0.00 2.24
383 387 8.458573 TTCAGTTATTGGAAATGTACACAAGT 57.541 30.769 0.00 0.00 0.00 3.16
453 457 4.314740 TTTTCACCCATTACAGTGCAAC 57.685 40.909 0.00 0.00 33.90 4.17
454 458 5.069648 TCATTTTTCACCCATTACAGTGCAA 59.930 36.000 0.00 0.00 33.90 4.08
455 459 4.586421 TCATTTTTCACCCATTACAGTGCA 59.414 37.500 0.00 0.00 33.90 4.57
456 460 5.132897 TCATTTTTCACCCATTACAGTGC 57.867 39.130 0.00 0.00 33.90 4.40
457 461 9.703892 TTTATTCATTTTTCACCCATTACAGTG 57.296 29.630 0.00 0.00 35.24 3.66
491 495 7.228108 CCATACAGCACATGTCAGAGAAAATAT 59.772 37.037 0.00 0.00 42.70 1.28
497 501 3.099141 TCCATACAGCACATGTCAGAGA 58.901 45.455 0.00 0.00 42.70 3.10
499 503 5.813513 ATATCCATACAGCACATGTCAGA 57.186 39.130 0.00 0.00 42.70 3.27
503 507 6.351371 GCCTAGTATATCCATACAGCACATGT 60.351 42.308 0.00 0.00 46.45 3.21
504 508 6.045318 GCCTAGTATATCCATACAGCACATG 58.955 44.000 0.00 0.00 39.69 3.21
508 512 5.337571 GCTTGCCTAGTATATCCATACAGCA 60.338 44.000 0.00 1.67 39.69 4.41
509 513 5.112686 GCTTGCCTAGTATATCCATACAGC 58.887 45.833 0.00 0.00 39.69 4.40
510 514 5.187772 TGGCTTGCCTAGTATATCCATACAG 59.812 44.000 13.18 0.00 39.69 2.74
511 515 5.090845 TGGCTTGCCTAGTATATCCATACA 58.909 41.667 13.18 0.00 39.69 2.29
512 516 5.665459 CTGGCTTGCCTAGTATATCCATAC 58.335 45.833 13.18 0.00 37.83 2.39
513 517 4.162320 GCTGGCTTGCCTAGTATATCCATA 59.838 45.833 13.18 0.00 0.00 2.74
514 518 3.054802 GCTGGCTTGCCTAGTATATCCAT 60.055 47.826 13.18 0.00 0.00 3.41
515 519 2.303022 GCTGGCTTGCCTAGTATATCCA 59.697 50.000 13.18 0.00 0.00 3.41
516 520 2.675317 CGCTGGCTTGCCTAGTATATCC 60.675 54.545 13.18 0.00 0.00 2.59
517 521 2.611518 CGCTGGCTTGCCTAGTATATC 58.388 52.381 13.18 0.00 0.00 1.63
518 522 1.338200 GCGCTGGCTTGCCTAGTATAT 60.338 52.381 13.18 0.00 35.83 0.86
519 523 0.033504 GCGCTGGCTTGCCTAGTATA 59.966 55.000 13.18 0.00 35.83 1.47
520 524 1.227674 GCGCTGGCTTGCCTAGTAT 60.228 57.895 13.18 0.00 35.83 2.12
533 540 3.359523 TTGCTCTTGCTGGCGCTG 61.360 61.111 7.64 1.33 40.48 5.18
534 541 3.360340 GTTGCTCTTGCTGGCGCT 61.360 61.111 7.64 0.00 40.48 5.92
535 542 3.198236 TTGTTGCTCTTGCTGGCGC 62.198 57.895 0.00 0.00 40.48 6.53
536 543 1.370900 GTTGTTGCTCTTGCTGGCG 60.371 57.895 0.00 0.00 40.48 5.69
565 572 7.093684 TGTTTGCTGTGTCCTGTGTAGTATATA 60.094 37.037 0.00 0.00 0.00 0.86
566 573 5.932619 TTGCTGTGTCCTGTGTAGTATAT 57.067 39.130 0.00 0.00 0.00 0.86
567 574 5.011227 TGTTTGCTGTGTCCTGTGTAGTATA 59.989 40.000 0.00 0.00 0.00 1.47
568 575 4.202315 TGTTTGCTGTGTCCTGTGTAGTAT 60.202 41.667 0.00 0.00 0.00 2.12
569 576 3.133183 TGTTTGCTGTGTCCTGTGTAGTA 59.867 43.478 0.00 0.00 0.00 1.82
570 577 2.093181 TGTTTGCTGTGTCCTGTGTAGT 60.093 45.455 0.00 0.00 0.00 2.73
571 578 2.287915 GTGTTTGCTGTGTCCTGTGTAG 59.712 50.000 0.00 0.00 0.00 2.74
589 596 1.813786 GCTCCTCTCGTACTGAAGTGT 59.186 52.381 0.00 0.00 0.00 3.55
629 639 4.778143 ATCGCCTCCACCAACGCC 62.778 66.667 0.00 0.00 0.00 5.68
630 640 2.746277 AATCGCCTCCACCAACGC 60.746 61.111 0.00 0.00 0.00 4.84
631 641 3.039202 GCAATCGCCTCCACCAACG 62.039 63.158 0.00 0.00 0.00 4.10
632 642 1.926511 CTGCAATCGCCTCCACCAAC 61.927 60.000 0.00 0.00 37.32 3.77
633 643 1.675310 CTGCAATCGCCTCCACCAA 60.675 57.895 0.00 0.00 37.32 3.67
634 644 2.046023 CTGCAATCGCCTCCACCA 60.046 61.111 0.00 0.00 37.32 4.17
635 645 2.825836 CCTGCAATCGCCTCCACC 60.826 66.667 0.00 0.00 37.32 4.61
636 646 3.512516 GCCTGCAATCGCCTCCAC 61.513 66.667 0.00 0.00 37.32 4.02
638 648 4.838152 TCGCCTGCAATCGCCTCC 62.838 66.667 2.72 0.00 37.32 4.30
639 649 3.567797 GTCGCCTGCAATCGCCTC 61.568 66.667 2.72 0.00 37.32 4.70
675 685 4.951963 GATTCGCCTCCTCCGCCG 62.952 72.222 0.00 0.00 0.00 6.46
676 686 4.610714 GGATTCGCCTCCTCCGCC 62.611 72.222 0.00 0.00 32.18 6.13
677 687 3.798954 CTGGATTCGCCTCCTCCGC 62.799 68.421 4.95 0.00 36.20 5.54
678 688 2.419198 CTGGATTCGCCTCCTCCG 59.581 66.667 4.95 0.00 36.20 4.63
679 689 2.825264 CCTGGATTCGCCTCCTCC 59.175 66.667 4.95 0.00 36.20 4.30
680 690 2.110006 GCCTGGATTCGCCTCCTC 59.890 66.667 0.00 0.00 36.20 3.71
681 691 2.688666 TGCCTGGATTCGCCTCCT 60.689 61.111 0.00 0.00 36.20 3.69
682 692 2.203126 CTGCCTGGATTCGCCTCC 60.203 66.667 0.00 0.00 37.63 4.30
683 693 2.899339 GCTGCCTGGATTCGCCTC 60.899 66.667 0.00 0.00 37.63 4.70
684 694 4.845580 CGCTGCCTGGATTCGCCT 62.846 66.667 0.00 0.00 37.63 5.52
725 735 4.131088 GACTCGACCCGGACTGCC 62.131 72.222 0.73 0.00 0.00 4.85
726 736 4.131088 GGACTCGACCCGGACTGC 62.131 72.222 0.73 0.00 0.00 4.40
727 737 3.450115 GGGACTCGACCCGGACTG 61.450 72.222 0.73 0.00 40.49 3.51
734 744 4.754667 GGCGTTGGGGACTCGACC 62.755 72.222 0.00 0.00 32.15 4.79
735 745 3.692406 AGGCGTTGGGGACTCGAC 61.692 66.667 0.00 0.00 36.85 4.20
736 746 3.691342 CAGGCGTTGGGGACTCGA 61.691 66.667 0.00 0.00 0.00 4.04
737 747 4.760047 CCAGGCGTTGGGGACTCG 62.760 72.222 0.64 0.00 43.75 4.18
745 755 3.831883 CATGGATCCCAGGCGTTG 58.168 61.111 9.90 0.00 36.75 4.10
750 760 0.979665 AGTATCGCATGGATCCCAGG 59.020 55.000 9.90 0.13 36.75 4.45
751 761 1.898472 AGAGTATCGCATGGATCCCAG 59.102 52.381 9.90 2.37 42.67 4.45
752 762 1.620323 CAGAGTATCGCATGGATCCCA 59.380 52.381 9.90 0.00 42.67 4.37
753 763 1.066573 CCAGAGTATCGCATGGATCCC 60.067 57.143 9.90 0.00 42.67 3.85
754 764 1.895798 TCCAGAGTATCGCATGGATCC 59.104 52.381 4.20 4.20 42.67 3.36
755 765 3.667497 TTCCAGAGTATCGCATGGATC 57.333 47.619 0.00 0.00 41.33 3.36
756 766 3.244353 CCTTTCCAGAGTATCGCATGGAT 60.244 47.826 0.00 0.00 41.33 3.41
757 767 2.103094 CCTTTCCAGAGTATCGCATGGA 59.897 50.000 0.00 0.00 42.67 3.41
758 768 2.158900 ACCTTTCCAGAGTATCGCATGG 60.159 50.000 0.00 0.00 42.67 3.66
759 769 3.185246 ACCTTTCCAGAGTATCGCATG 57.815 47.619 0.00 0.00 42.67 4.06
760 770 3.322254 CCTACCTTTCCAGAGTATCGCAT 59.678 47.826 0.00 0.00 42.67 4.73
761 771 2.693591 CCTACCTTTCCAGAGTATCGCA 59.306 50.000 0.00 0.00 42.67 5.10
762 772 2.957006 TCCTACCTTTCCAGAGTATCGC 59.043 50.000 0.00 0.00 42.67 4.58
763 773 3.004944 GCTCCTACCTTTCCAGAGTATCG 59.995 52.174 0.00 0.00 42.67 2.92
764 774 3.322541 GGCTCCTACCTTTCCAGAGTATC 59.677 52.174 0.00 0.00 0.00 2.24
765 775 3.310193 GGCTCCTACCTTTCCAGAGTAT 58.690 50.000 0.00 0.00 0.00 2.12
766 776 2.748388 GGCTCCTACCTTTCCAGAGTA 58.252 52.381 0.00 0.00 0.00 2.59
767 777 1.574263 GGCTCCTACCTTTCCAGAGT 58.426 55.000 0.00 0.00 0.00 3.24
768 778 0.461961 CGGCTCCTACCTTTCCAGAG 59.538 60.000 0.00 0.00 0.00 3.35
769 779 0.040646 TCGGCTCCTACCTTTCCAGA 59.959 55.000 0.00 0.00 0.00 3.86
770 780 0.461961 CTCGGCTCCTACCTTTCCAG 59.538 60.000 0.00 0.00 0.00 3.86
771 781 1.614241 GCTCGGCTCCTACCTTTCCA 61.614 60.000 0.00 0.00 0.00 3.53
772 782 1.144276 GCTCGGCTCCTACCTTTCC 59.856 63.158 0.00 0.00 0.00 3.13
773 783 1.144276 GGCTCGGCTCCTACCTTTC 59.856 63.158 0.00 0.00 0.00 2.62
774 784 2.722201 CGGCTCGGCTCCTACCTTT 61.722 63.158 0.00 0.00 0.00 3.11
775 785 2.930777 ATCGGCTCGGCTCCTACCTT 62.931 60.000 0.00 0.00 0.00 3.50
776 786 3.438615 ATCGGCTCGGCTCCTACCT 62.439 63.158 0.00 0.00 0.00 3.08
777 787 2.913060 ATCGGCTCGGCTCCTACC 60.913 66.667 0.00 0.00 0.00 3.18
778 788 1.735376 TTGATCGGCTCGGCTCCTAC 61.735 60.000 0.00 0.00 0.00 3.18
779 789 1.455032 TTGATCGGCTCGGCTCCTA 60.455 57.895 0.00 0.00 0.00 2.94
780 790 2.759973 TTGATCGGCTCGGCTCCT 60.760 61.111 0.00 0.00 0.00 3.69
781 791 2.279784 CTTGATCGGCTCGGCTCC 60.280 66.667 0.00 0.00 0.00 4.70
782 792 2.964389 GCTTGATCGGCTCGGCTC 60.964 66.667 3.64 0.00 0.00 4.70
783 793 4.537433 GGCTTGATCGGCTCGGCT 62.537 66.667 9.73 0.00 0.00 5.52
784 794 4.537433 AGGCTTGATCGGCTCGGC 62.537 66.667 9.73 0.00 34.29 5.54
785 795 2.587194 CAGGCTTGATCGGCTCGG 60.587 66.667 9.73 0.00 37.76 4.63
786 796 2.587194 CCAGGCTTGATCGGCTCG 60.587 66.667 0.00 2.82 37.76 5.03
787 797 1.227497 CTCCAGGCTTGATCGGCTC 60.227 63.158 0.00 2.03 37.76 4.70
788 798 2.906458 CTCCAGGCTTGATCGGCT 59.094 61.111 0.00 1.12 40.87 5.52
789 799 2.899339 GCTCCAGGCTTGATCGGC 60.899 66.667 0.00 2.37 38.06 5.54
790 800 2.203126 GGCTCCAGGCTTGATCGG 60.203 66.667 0.00 0.00 41.46 4.18
791 801 2.587194 CGGCTCCAGGCTTGATCG 60.587 66.667 0.00 0.00 41.46 3.69
792 802 1.227497 CTCGGCTCCAGGCTTGATC 60.227 63.158 0.00 0.00 41.46 2.92
793 803 2.906458 CTCGGCTCCAGGCTTGAT 59.094 61.111 0.00 0.00 41.46 2.57
794 804 4.087892 GCTCGGCTCCAGGCTTGA 62.088 66.667 0.00 0.00 41.46 3.02
795 805 3.907260 TTGCTCGGCTCCAGGCTTG 62.907 63.158 0.00 0.00 41.46 4.01
796 806 3.640407 TTGCTCGGCTCCAGGCTT 61.640 61.111 0.00 0.00 41.46 4.35
797 807 4.400961 GTTGCTCGGCTCCAGGCT 62.401 66.667 0.00 0.00 41.46 4.58
799 809 3.883744 AACGTTGCTCGGCTCCAGG 62.884 63.158 0.00 0.00 44.69 4.45
800 810 1.961277 AAACGTTGCTCGGCTCCAG 60.961 57.895 0.00 0.00 44.69 3.86
801 811 2.110213 AAACGTTGCTCGGCTCCA 59.890 55.556 0.00 0.00 44.69 3.86
802 812 2.556287 CAAACGTTGCTCGGCTCC 59.444 61.111 0.00 0.00 44.69 4.70
803 813 2.556287 CCAAACGTTGCTCGGCTC 59.444 61.111 0.00 0.00 44.69 4.70
804 814 2.951475 TTCCCAAACGTTGCTCGGCT 62.951 55.000 0.00 0.00 44.69 5.52
805 815 2.548295 TTCCCAAACGTTGCTCGGC 61.548 57.895 0.00 0.00 44.69 5.54
806 816 1.164041 AGTTCCCAAACGTTGCTCGG 61.164 55.000 0.00 0.05 44.69 4.63
807 817 0.041312 CAGTTCCCAAACGTTGCTCG 60.041 55.000 0.00 0.84 46.00 5.03
808 818 1.002792 GTCAGTTCCCAAACGTTGCTC 60.003 52.381 0.00 0.00 40.48 4.26
809 819 1.021968 GTCAGTTCCCAAACGTTGCT 58.978 50.000 0.00 0.00 40.48 3.91
810 820 0.316689 CGTCAGTTCCCAAACGTTGC 60.317 55.000 0.00 0.00 40.48 4.17
811 821 1.011333 ACGTCAGTTCCCAAACGTTG 58.989 50.000 0.00 0.00 45.21 4.10
812 822 1.011333 CACGTCAGTTCCCAAACGTT 58.989 50.000 0.00 0.00 45.21 3.99
814 824 0.531090 TCCACGTCAGTTCCCAAACG 60.531 55.000 0.00 0.00 40.48 3.60
815 825 1.226746 CTCCACGTCAGTTCCCAAAC 58.773 55.000 0.00 0.00 35.50 2.93
816 826 0.107831 CCTCCACGTCAGTTCCCAAA 59.892 55.000 0.00 0.00 0.00 3.28
817 827 0.761323 TCCTCCACGTCAGTTCCCAA 60.761 55.000 0.00 0.00 0.00 4.12
818 828 1.152419 TCCTCCACGTCAGTTCCCA 60.152 57.895 0.00 0.00 0.00 4.37
819 829 0.898789 TCTCCTCCACGTCAGTTCCC 60.899 60.000 0.00 0.00 0.00 3.97
820 830 0.244178 GTCTCCTCCACGTCAGTTCC 59.756 60.000 0.00 0.00 0.00 3.62
821 831 0.109689 CGTCTCCTCCACGTCAGTTC 60.110 60.000 0.00 0.00 32.41 3.01
822 832 0.536687 TCGTCTCCTCCACGTCAGTT 60.537 55.000 0.00 0.00 38.45 3.16
823 833 0.322636 ATCGTCTCCTCCACGTCAGT 60.323 55.000 0.00 0.00 38.45 3.41
824 834 0.378962 GATCGTCTCCTCCACGTCAG 59.621 60.000 0.00 0.00 38.45 3.51
825 835 1.030488 GGATCGTCTCCTCCACGTCA 61.030 60.000 0.00 0.00 41.29 4.35
826 836 1.728672 GGATCGTCTCCTCCACGTC 59.271 63.158 0.00 0.00 41.29 4.34
827 837 2.113433 CGGATCGTCTCCTCCACGT 61.113 63.158 5.48 0.00 42.47 4.49
828 838 0.812811 TACGGATCGTCTCCTCCACG 60.813 60.000 0.00 0.00 42.47 4.94
829 839 0.662085 GTACGGATCGTCTCCTCCAC 59.338 60.000 0.00 0.00 42.47 4.02
830 840 0.812811 CGTACGGATCGTCTCCTCCA 60.813 60.000 7.57 0.00 42.47 3.86
831 841 0.531532 TCGTACGGATCGTCTCCTCC 60.532 60.000 16.52 0.00 42.47 4.30
832 842 1.194997 CATCGTACGGATCGTCTCCTC 59.805 57.143 16.52 0.00 42.47 3.71
833 843 1.227639 CATCGTACGGATCGTCTCCT 58.772 55.000 16.52 0.00 42.47 3.69
834 844 0.385723 GCATCGTACGGATCGTCTCC 60.386 60.000 16.52 0.00 41.54 3.71
835 845 0.306840 TGCATCGTACGGATCGTCTC 59.693 55.000 16.52 0.00 41.54 3.36
836 846 0.308068 CTGCATCGTACGGATCGTCT 59.692 55.000 16.52 0.00 41.54 4.18
837 847 0.306840 TCTGCATCGTACGGATCGTC 59.693 55.000 16.52 0.07 41.54 4.20
838 848 0.308068 CTCTGCATCGTACGGATCGT 59.692 55.000 16.52 0.00 44.35 3.73
839 849 0.999228 GCTCTGCATCGTACGGATCG 60.999 60.000 16.52 2.67 31.28 3.69
840 850 0.030773 TGCTCTGCATCGTACGGATC 59.969 55.000 16.52 5.08 31.71 3.36
841 851 2.115510 TGCTCTGCATCGTACGGAT 58.884 52.632 16.52 4.92 31.71 4.18
842 852 3.598327 TGCTCTGCATCGTACGGA 58.402 55.556 16.52 3.09 31.71 4.69
851 861 1.668793 CACGTGGACATGCTCTGCA 60.669 57.895 7.95 0.00 44.86 4.41
852 862 2.393768 CCACGTGGACATGCTCTGC 61.394 63.158 31.31 0.00 37.39 4.26
853 863 1.004560 ACCACGTGGACATGCTCTG 60.005 57.895 40.21 10.59 38.94 3.35
854 864 1.004560 CACCACGTGGACATGCTCT 60.005 57.895 40.21 13.26 38.94 4.09
855 865 2.680913 GCACCACGTGGACATGCTC 61.681 63.158 40.21 12.88 38.94 4.26
856 866 2.669569 GCACCACGTGGACATGCT 60.670 61.111 40.21 14.91 38.94 3.79
857 867 4.088762 CGCACCACGTGGACATGC 62.089 66.667 40.21 33.97 38.94 4.06
858 868 1.298157 ATTCGCACCACGTGGACATG 61.298 55.000 40.21 27.78 44.19 3.21
859 869 1.003839 ATTCGCACCACGTGGACAT 60.004 52.632 40.21 16.59 44.19 3.06
860 870 1.666553 GATTCGCACCACGTGGACA 60.667 57.895 40.21 18.42 44.19 4.02
861 871 2.726691 CGATTCGCACCACGTGGAC 61.727 63.158 40.21 28.11 44.19 4.02
862 872 2.423290 TTCGATTCGCACCACGTGGA 62.423 55.000 40.21 18.81 44.19 4.02
863 873 1.955529 CTTCGATTCGCACCACGTGG 61.956 60.000 32.83 32.83 44.19 4.94
864 874 1.416049 CTTCGATTCGCACCACGTG 59.584 57.895 9.08 9.08 44.19 4.49
865 875 1.736645 CCTTCGATTCGCACCACGT 60.737 57.895 0.00 0.00 44.19 4.49
866 876 3.081133 CCTTCGATTCGCACCACG 58.919 61.111 0.00 0.00 45.62 4.94
867 877 2.785258 GCCTTCGATTCGCACCAC 59.215 61.111 0.00 0.00 0.00 4.16
868 878 2.813474 CGCCTTCGATTCGCACCA 60.813 61.111 0.00 0.00 38.10 4.17
869 879 3.564027 CCGCCTTCGATTCGCACC 61.564 66.667 0.00 0.00 38.10 5.01
870 880 3.564027 CCCGCCTTCGATTCGCAC 61.564 66.667 0.00 0.00 38.10 5.34
871 881 4.830765 CCCCGCCTTCGATTCGCA 62.831 66.667 0.00 0.00 38.10 5.10
872 882 4.832608 ACCCCGCCTTCGATTCGC 62.833 66.667 0.00 0.00 38.10 4.70
873 883 2.125269 AACCCCGCCTTCGATTCG 60.125 61.111 0.00 0.00 38.10 3.34
874 884 2.761195 GCAACCCCGCCTTCGATTC 61.761 63.158 0.00 0.00 38.10 2.52
875 885 2.750237 GCAACCCCGCCTTCGATT 60.750 61.111 0.00 0.00 38.10 3.34
876 886 3.561120 TTGCAACCCCGCCTTCGAT 62.561 57.895 0.00 0.00 38.10 3.59
877 887 3.776347 TTTGCAACCCCGCCTTCGA 62.776 57.895 0.00 0.00 38.10 3.71
878 888 3.267597 CTTTGCAACCCCGCCTTCG 62.268 63.158 0.00 0.00 0.00 3.79
879 889 2.650778 CTTTGCAACCCCGCCTTC 59.349 61.111 0.00 0.00 0.00 3.46
880 890 2.917227 CCTTTGCAACCCCGCCTT 60.917 61.111 0.00 0.00 0.00 4.35
881 891 3.868200 CTCCTTTGCAACCCCGCCT 62.868 63.158 0.00 0.00 0.00 5.52
882 892 3.373565 CTCCTTTGCAACCCCGCC 61.374 66.667 0.00 0.00 0.00 6.13
883 893 3.373565 CCTCCTTTGCAACCCCGC 61.374 66.667 0.00 0.00 0.00 6.13
884 894 1.675641 CTCCTCCTTTGCAACCCCG 60.676 63.158 0.00 0.00 0.00 5.73
885 895 1.304464 CCTCCTCCTTTGCAACCCC 60.304 63.158 0.00 0.00 0.00 4.95
886 896 0.178961 AACCTCCTCCTTTGCAACCC 60.179 55.000 0.00 0.00 0.00 4.11
887 897 1.341209 CAAACCTCCTCCTTTGCAACC 59.659 52.381 0.00 0.00 0.00 3.77
888 898 2.031870 ACAAACCTCCTCCTTTGCAAC 58.968 47.619 0.00 0.00 31.63 4.17
889 899 2.031120 CACAAACCTCCTCCTTTGCAA 58.969 47.619 0.00 0.00 31.63 4.08
890 900 1.691196 CACAAACCTCCTCCTTTGCA 58.309 50.000 0.00 0.00 31.63 4.08
891 901 0.315251 GCACAAACCTCCTCCTTTGC 59.685 55.000 0.00 0.00 31.63 3.68
892 902 0.961753 GGCACAAACCTCCTCCTTTG 59.038 55.000 0.00 0.00 34.18 2.77
893 903 0.537371 CGGCACAAACCTCCTCCTTT 60.537 55.000 0.00 0.00 0.00 3.11
894 904 1.073199 CGGCACAAACCTCCTCCTT 59.927 57.895 0.00 0.00 0.00 3.36
895 905 2.750350 CGGCACAAACCTCCTCCT 59.250 61.111 0.00 0.00 0.00 3.69
896 906 2.359975 CCGGCACAAACCTCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
897 907 1.671379 GACCGGCACAAACCTCCTC 60.671 63.158 0.00 0.00 0.00 3.71
898 908 2.113243 GAGACCGGCACAAACCTCCT 62.113 60.000 0.00 0.00 0.00 3.69
899 909 1.671379 GAGACCGGCACAAACCTCC 60.671 63.158 0.00 0.00 0.00 4.30
900 910 1.671379 GGAGACCGGCACAAACCTC 60.671 63.158 0.00 0.00 0.00 3.85
901 911 2.430367 GGAGACCGGCACAAACCT 59.570 61.111 0.00 0.00 0.00 3.50
902 912 2.112297 TGGAGACCGGCACAAACC 59.888 61.111 0.00 2.54 0.00 3.27
903 913 2.258726 GGTGGAGACCGGCACAAAC 61.259 63.158 0.00 0.00 30.61 2.93
904 914 2.112297 GGTGGAGACCGGCACAAA 59.888 61.111 0.00 0.00 30.61 2.83
982 999 3.647771 GCTGTTTCCTCCCGGGGT 61.648 66.667 23.50 0.00 35.33 4.95
994 1011 3.322466 CGGGAGAGGGTGGCTGTT 61.322 66.667 0.00 0.00 0.00 3.16
1068 1087 0.973496 AGGAGAAGAGCGGGGAAGAC 60.973 60.000 0.00 0.00 0.00 3.01
1081 1100 0.030705 CATGAGGGAGGGGAGGAGAA 60.031 60.000 0.00 0.00 0.00 2.87
1139 1158 3.923864 TCAACCGCCAGCGTGTCT 61.924 61.111 11.55 0.00 37.81 3.41
1147 1166 4.953868 CCGACGTGTCAACCGCCA 62.954 66.667 0.00 0.00 0.00 5.69
1153 1172 2.358125 CATGGGCCGACGTGTCAA 60.358 61.111 0.00 0.00 0.00 3.18
1511 1680 3.524330 GAGCGGCGAGTAGTAGCGG 62.524 68.421 12.98 5.95 36.87 5.52
1645 2708 0.167908 CCGAGCTTTGCAAACGCATA 59.832 50.000 25.24 1.96 39.68 3.14
1769 2976 3.551407 GATCCCCCGCACCTCCTC 61.551 72.222 0.00 0.00 0.00 3.71
2239 5571 8.420222 ACATACACATGAATTGAAAAGGTTCAA 58.580 29.630 0.00 4.49 44.33 2.69
2392 5725 2.760092 TGTTTTCTTTCCAGTGCTTGCT 59.240 40.909 0.00 0.00 0.00 3.91
2402 5735 2.218603 TCGCTCCACTGTTTTCTTTCC 58.781 47.619 0.00 0.00 0.00 3.13
2450 5784 9.730420 GCTCTACTGTTGTTTCTCAAAATAAAA 57.270 29.630 0.00 0.00 37.81 1.52
2454 5788 6.942532 TGCTCTACTGTTGTTTCTCAAAAT 57.057 33.333 0.00 0.00 37.81 1.82
2468 5810 7.746475 GCTTGTGTATTTTAGTTTGCTCTACTG 59.254 37.037 0.00 0.00 0.00 2.74
2479 5821 4.092968 GCGCAGTAGCTTGTGTATTTTAGT 59.907 41.667 0.30 0.00 39.10 2.24
2495 5837 0.536233 TGCTTTTTCCCAGCGCAGTA 60.536 50.000 11.47 0.00 40.45 2.74
2497 5839 1.372128 GTGCTTTTTCCCAGCGCAG 60.372 57.895 11.47 0.00 45.45 5.18
2512 6147 4.803908 GGCAGGGCCCACTAGTGC 62.804 72.222 27.56 24.23 44.06 4.40
2589 6517 8.973835 TCACTTTTTCTTTTGTGATTACGTTT 57.026 26.923 0.00 0.00 34.94 3.60
2664 6801 5.051508 GCAAAAAGTGACACAAATGCTAGTG 60.052 40.000 8.59 0.00 41.40 2.74
2665 6802 5.043248 GCAAAAAGTGACACAAATGCTAGT 58.957 37.500 8.59 0.00 0.00 2.57
2694 6831 7.581213 TCACCAAAATAGCAGTTATTATGGG 57.419 36.000 0.00 0.00 31.68 4.00
2724 6861 7.320399 CCATTCTGCTACGGTAACATATCATA 58.680 38.462 0.00 0.00 0.00 2.15
2729 6866 3.707611 ACCCATTCTGCTACGGTAACATA 59.292 43.478 0.00 0.00 0.00 2.29
2733 6870 6.127111 TGTTTATACCCATTCTGCTACGGTAA 60.127 38.462 0.00 0.00 32.99 2.85
2748 6885 8.671028 ACTTTCACGATACAAATGTTTATACCC 58.329 33.333 0.00 0.00 0.00 3.69
2769 6906 3.591023 AGAGCGAGCTCCTTAAACTTTC 58.409 45.455 20.15 0.00 43.70 2.62
2812 6950 8.720562 TCATGTATGACTACACTTTGTGATTTG 58.279 33.333 4.61 0.00 40.57 2.32
2813 6951 8.846943 TCATGTATGACTACACTTTGTGATTT 57.153 30.769 4.61 0.00 40.57 2.17
2858 6996 1.410882 GGGAGAGTTCCTCATTCTCGG 59.589 57.143 0.00 0.00 43.76 4.63
2943 7082 1.743252 AAGCAAGCTACAGCCGAGC 60.743 57.895 0.00 0.01 43.38 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.