Multiple sequence alignment - TraesCS1D01G324500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G324500 chr1D 100.000 2585 0 0 1 2585 416659828 416657244 0.000000e+00 4774.0
1 TraesCS1D01G324500 chr1D 93.706 1271 70 5 405 1673 250223367 250224629 0.000000e+00 1895.0
2 TraesCS1D01G324500 chr1D 98.459 584 8 1 2003 2585 393110408 393109825 0.000000e+00 1027.0
3 TraesCS1D01G324500 chr1D 98.107 581 10 1 2005 2585 463089755 463089176 0.000000e+00 1011.0
4 TraesCS1D01G324500 chr1D 98.103 580 10 1 2006 2585 434683674 434684252 0.000000e+00 1009.0
5 TraesCS1D01G324500 chr1D 98.100 579 11 0 2007 2585 467845654 467845076 0.000000e+00 1009.0
6 TraesCS1D01G324500 chr1D 89.498 219 17 4 4 218 416624662 416624446 3.280000e-69 272.0
7 TraesCS1D01G324500 chr2D 94.252 1270 64 4 402 1670 236134836 236136097 0.000000e+00 1932.0
8 TraesCS1D01G324500 chr2D 98.276 580 10 0 2006 2585 628779722 628779143 0.000000e+00 1016.0
9 TraesCS1D01G324500 chr2D 98.273 579 10 0 2007 2585 38430936 38430358 0.000000e+00 1014.0
10 TraesCS1D01G324500 chr2D 97.778 585 13 0 2001 2585 5197575 5196991 0.000000e+00 1009.0
11 TraesCS1D01G324500 chr2D 98.100 579 11 0 2007 2585 18575966 18576544 0.000000e+00 1009.0
12 TraesCS1D01G324500 chr2D 93.294 343 18 5 1672 2013 95721320 95720982 3.840000e-138 501.0
13 TraesCS1D01G324500 chr5D 93.574 1276 65 7 405 1678 59767195 59765935 0.000000e+00 1886.0
14 TraesCS1D01G324500 chr5D 93.318 1272 73 7 402 1672 373804925 373803665 0.000000e+00 1868.0
15 TraesCS1D01G324500 chr5D 93.787 338 19 2 1674 2010 520353548 520353884 8.250000e-140 507.0
16 TraesCS1D01G324500 chr7D 93.612 1268 72 6 405 1671 175933381 175932122 0.000000e+00 1884.0
17 TraesCS1D01G324500 chr7D 93.459 1269 81 1 405 1673 18554232 18552966 0.000000e+00 1882.0
18 TraesCS1D01G324500 chr7D 93.410 349 19 4 1667 2013 105472236 105472582 4.930000e-142 514.0
19 TraesCS1D01G324500 chr7D 93.003 343 22 2 1673 2014 99177260 99176919 1.380000e-137 499.0
20 TraesCS1D01G324500 chr7D 92.625 339 22 3 1673 2010 36913138 36913474 3.870000e-133 484.0
21 TraesCS1D01G324500 chr4D 93.328 1274 74 7 405 1673 84467726 84466459 0.000000e+00 1871.0
22 TraesCS1D01G324500 chr4D 98.103 580 11 0 2006 2585 26947668 26947089 0.000000e+00 1011.0
23 TraesCS1D01G324500 chr4D 93.215 339 20 3 1673 2010 164772565 164772901 1.790000e-136 496.0
24 TraesCS1D01G324500 chr4D 92.669 341 20 3 1674 2013 11848872 11848536 1.080000e-133 486.0
25 TraesCS1D01G324500 chr4D 92.375 341 24 2 1674 2013 110000374 110000035 3.870000e-133 484.0
26 TraesCS1D01G324500 chr6D 93.187 1277 76 7 405 1673 421840968 421842241 0.000000e+00 1866.0
27 TraesCS1D01G324500 chr3D 93.239 1272 74 9 405 1673 553937352 553936090 0.000000e+00 1862.0
28 TraesCS1D01G324500 chr1A 93.842 406 16 5 1 404 513903228 513902830 1.020000e-168 603.0
29 TraesCS1D01G324500 chr1A 85.909 220 15 6 4 218 513894514 513894306 1.200000e-53 220.0
30 TraesCS1D01G324500 chr1B 91.358 405 11 6 1 404 563313466 563313085 1.360000e-147 532.0
31 TraesCS1D01G324500 chr1B 92.135 356 17 4 1 355 563439425 563439080 2.310000e-135 492.0
32 TraesCS1D01G324500 chr1B 93.907 279 12 4 79 355 563323953 563323678 1.430000e-112 416.0
33 TraesCS1D01G324500 chr1B 93.478 92 4 1 4 93 563367506 563367415 4.490000e-28 135.0
34 TraesCS1D01G324500 chr1B 91.549 71 2 2 72 138 563307166 563307096 7.620000e-16 95.3
35 TraesCS1D01G324500 chr1B 92.453 53 4 0 352 404 563438839 563438787 2.760000e-10 76.8
36 TraesCS1D01G324500 chr4A 92.878 337 20 3 1675 2010 597174338 597174671 1.080000e-133 486.0
37 TraesCS1D01G324500 chr3A 84.507 71 11 0 301 371 696707076 696707146 1.280000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G324500 chr1D 416657244 416659828 2584 True 4774.0 4774 100.000 1 2585 1 chr1D.!!$R3 2584
1 TraesCS1D01G324500 chr1D 250223367 250224629 1262 False 1895.0 1895 93.706 405 1673 1 chr1D.!!$F1 1268
2 TraesCS1D01G324500 chr1D 393109825 393110408 583 True 1027.0 1027 98.459 2003 2585 1 chr1D.!!$R1 582
3 TraesCS1D01G324500 chr1D 463089176 463089755 579 True 1011.0 1011 98.107 2005 2585 1 chr1D.!!$R4 580
4 TraesCS1D01G324500 chr1D 434683674 434684252 578 False 1009.0 1009 98.103 2006 2585 1 chr1D.!!$F2 579
5 TraesCS1D01G324500 chr1D 467845076 467845654 578 True 1009.0 1009 98.100 2007 2585 1 chr1D.!!$R5 578
6 TraesCS1D01G324500 chr2D 236134836 236136097 1261 False 1932.0 1932 94.252 402 1670 1 chr2D.!!$F2 1268
7 TraesCS1D01G324500 chr2D 628779143 628779722 579 True 1016.0 1016 98.276 2006 2585 1 chr2D.!!$R4 579
8 TraesCS1D01G324500 chr2D 38430358 38430936 578 True 1014.0 1014 98.273 2007 2585 1 chr2D.!!$R2 578
9 TraesCS1D01G324500 chr2D 5196991 5197575 584 True 1009.0 1009 97.778 2001 2585 1 chr2D.!!$R1 584
10 TraesCS1D01G324500 chr2D 18575966 18576544 578 False 1009.0 1009 98.100 2007 2585 1 chr2D.!!$F1 578
11 TraesCS1D01G324500 chr5D 59765935 59767195 1260 True 1886.0 1886 93.574 405 1678 1 chr5D.!!$R1 1273
12 TraesCS1D01G324500 chr5D 373803665 373804925 1260 True 1868.0 1868 93.318 402 1672 1 chr5D.!!$R2 1270
13 TraesCS1D01G324500 chr7D 175932122 175933381 1259 True 1884.0 1884 93.612 405 1671 1 chr7D.!!$R3 1266
14 TraesCS1D01G324500 chr7D 18552966 18554232 1266 True 1882.0 1882 93.459 405 1673 1 chr7D.!!$R1 1268
15 TraesCS1D01G324500 chr4D 84466459 84467726 1267 True 1871.0 1871 93.328 405 1673 1 chr4D.!!$R3 1268
16 TraesCS1D01G324500 chr4D 26947089 26947668 579 True 1011.0 1011 98.103 2006 2585 1 chr4D.!!$R2 579
17 TraesCS1D01G324500 chr6D 421840968 421842241 1273 False 1866.0 1866 93.187 405 1673 1 chr6D.!!$F1 1268
18 TraesCS1D01G324500 chr3D 553936090 553937352 1262 True 1862.0 1862 93.239 405 1673 1 chr3D.!!$R1 1268
19 TraesCS1D01G324500 chr1B 563438787 563439425 638 True 284.4 492 92.294 1 404 2 chr1B.!!$R5 403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 1028 0.318869 CAGATCTGCGCTAGAGGCTG 60.319 60.0 10.38 15.89 39.2 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 1951 0.03831 GCCTAGACCAAAGCCCTGTT 59.962 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.240623 TGTTGAACAATACACAGGATGAACC 59.759 40.000 0.00 0.00 39.69 3.62
67 68 6.349300 ACAATACACAGGATGAACCAGATAC 58.651 40.000 0.00 0.00 39.69 2.24
69 70 3.454858 ACACAGGATGAACCAGATACCT 58.545 45.455 0.00 0.00 39.69 3.08
94 95 6.070767 TGACAAGTTAAAATGACCAAAACCCA 60.071 34.615 0.00 0.00 0.00 4.51
109 110 1.979809 ACCCAGGTCCACCATATGAA 58.020 50.000 3.65 0.00 38.89 2.57
132 134 2.645297 TGGCTCAAACCTAATACACCCA 59.355 45.455 0.00 0.00 0.00 4.51
156 158 8.676401 CCATGTATATCATTCAGTGAACACAAA 58.324 33.333 7.96 2.15 40.97 2.83
188 190 7.601508 TCATTGCAATTACAATTATGCACACAA 59.398 29.630 9.83 0.00 38.19 3.33
220 222 2.756760 CAGGGACAATATGCAAGCAAGT 59.243 45.455 0.00 0.00 0.00 3.16
221 223 2.756760 AGGGACAATATGCAAGCAAGTG 59.243 45.455 0.00 0.28 0.00 3.16
246 248 5.565592 TCTGATCAATAACGCATTGCTTT 57.434 34.783 7.12 6.34 43.28 3.51
253 255 5.801444 TCAATAACGCATTGCTTTTGATCAG 59.199 36.000 5.65 0.00 43.28 2.90
254 256 3.921119 AACGCATTGCTTTTGATCAGA 57.079 38.095 7.12 0.00 0.00 3.27
255 257 3.207474 ACGCATTGCTTTTGATCAGAC 57.793 42.857 7.12 0.00 0.00 3.51
256 258 2.816087 ACGCATTGCTTTTGATCAGACT 59.184 40.909 7.12 0.00 0.00 3.24
257 259 3.168963 CGCATTGCTTTTGATCAGACTG 58.831 45.455 7.12 0.00 0.00 3.51
258 260 3.365666 CGCATTGCTTTTGATCAGACTGT 60.366 43.478 7.12 0.00 0.00 3.55
259 261 4.142838 CGCATTGCTTTTGATCAGACTGTA 60.143 41.667 7.12 0.00 0.00 2.74
261 263 6.238184 CGCATTGCTTTTGATCAGACTGTATA 60.238 38.462 7.12 0.00 0.00 1.47
262 264 7.519488 CGCATTGCTTTTGATCAGACTGTATAT 60.519 37.037 7.12 0.00 0.00 0.86
263 265 8.133627 GCATTGCTTTTGATCAGACTGTATATT 58.866 33.333 0.16 0.00 0.00 1.28
264 266 9.447040 CATTGCTTTTGATCAGACTGTATATTG 57.553 33.333 1.59 0.00 0.00 1.90
265 267 7.019774 TGCTTTTGATCAGACTGTATATTGC 57.980 36.000 1.59 1.91 0.00 3.56
266 268 6.598850 TGCTTTTGATCAGACTGTATATTGCA 59.401 34.615 1.59 4.34 0.00 4.08
267 269 7.121020 TGCTTTTGATCAGACTGTATATTGCAA 59.879 33.333 0.00 0.00 0.00 4.08
268 270 7.642978 GCTTTTGATCAGACTGTATATTGCAAG 59.357 37.037 4.94 0.00 0.00 4.01
269 271 8.565896 TTTTGATCAGACTGTATATTGCAAGT 57.434 30.769 4.94 0.00 0.00 3.16
270 272 7.543947 TTGATCAGACTGTATATTGCAAGTG 57.456 36.000 4.94 0.00 0.00 3.16
271 273 6.643388 TGATCAGACTGTATATTGCAAGTGT 58.357 36.000 4.94 0.00 0.00 3.55
311 313 9.838339 AGGAAATGAATGAAATACTTCGTATCT 57.162 29.630 0.00 0.00 33.94 1.98
313 315 9.869844 GAAATGAATGAAATACTTCGTATCTGG 57.130 33.333 0.00 0.00 33.94 3.86
361 607 8.251721 CACACTTTAATTAGCTAGTAGGACACT 58.748 37.037 0.00 0.00 41.62 3.55
393 639 2.628657 GGCTCCGCTAGAAAATCCTCTA 59.371 50.000 0.00 0.00 0.00 2.43
394 640 3.259625 GGCTCCGCTAGAAAATCCTCTAT 59.740 47.826 0.00 0.00 0.00 1.98
395 641 4.490743 GCTCCGCTAGAAAATCCTCTATC 58.509 47.826 0.00 0.00 0.00 2.08
472 719 1.692411 GAAGAGGCCTGTTTGGTTGT 58.308 50.000 17.52 0.00 38.35 3.32
674 927 0.536006 GGCGCCAAATCTAGCCTCAT 60.536 55.000 24.80 0.00 45.67 2.90
687 940 0.332972 GCCTCATCCCCCTTTCACTT 59.667 55.000 0.00 0.00 0.00 3.16
772 1027 0.467106 TCAGATCTGCGCTAGAGGCT 60.467 55.000 18.36 8.74 39.20 4.58
773 1028 0.318869 CAGATCTGCGCTAGAGGCTG 60.319 60.000 10.38 15.89 39.20 4.85
774 1029 0.754957 AGATCTGCGCTAGAGGCTGT 60.755 55.000 9.73 0.00 39.20 4.40
856 1120 1.080705 CGTCTGGTCGACCTTGTCC 60.081 63.158 33.39 18.57 39.56 4.02
916 1182 2.124996 TAAGCAGCACCCCTCCCT 59.875 61.111 0.00 0.00 0.00 4.20
927 1193 1.153565 ACCCCTCCCTCCTTTGTTAGA 59.846 52.381 0.00 0.00 0.00 2.10
934 1200 2.280628 CCTCCTTTGTTAGATCGGTGC 58.719 52.381 0.00 0.00 0.00 5.01
1080 1346 1.255882 GGGTCATGTTCATGCACCAA 58.744 50.000 22.57 3.29 0.00 3.67
1134 1400 2.491693 CCGCTATGGTCCATTGTTTGTT 59.508 45.455 10.33 0.00 0.00 2.83
1178 1444 9.003658 CCAAAATCTGAACTACATCTACAACTT 57.996 33.333 0.00 0.00 0.00 2.66
1280 1547 3.812053 GGGCTGCTACAAGATAACATCAG 59.188 47.826 0.00 0.00 0.00 2.90
1303 1570 1.202687 CCAGTGTGGAAGAGCAAGTGA 60.203 52.381 0.00 0.00 40.96 3.41
1311 1578 3.072330 TGGAAGAGCAAGTGACCATGTTA 59.928 43.478 0.00 0.00 0.00 2.41
1364 1631 2.552315 GGGTCATTCACAACACGTTCAT 59.448 45.455 0.00 0.00 0.00 2.57
1386 1653 3.320256 TGAGATCAATGGAGACCATCTCG 59.680 47.826 3.69 0.00 44.40 4.04
1419 1686 2.029110 GCAGGTGCTTTTTGCTATTGGA 60.029 45.455 0.00 0.00 43.37 3.53
1441 1708 4.666512 AGAGCTTAGAGGAGAGATGATCC 58.333 47.826 0.00 0.00 37.07 3.36
1634 1901 6.577103 CAATAGATGGTACTCATGTCACTGT 58.423 40.000 2.07 0.00 35.97 3.55
1655 1922 4.202535 TGTCAGAGTTCCTAGGTCACAGTA 60.203 45.833 9.08 0.00 0.00 2.74
1666 1933 2.158900 AGGTCACAGTATGCAGCATACC 60.159 50.000 33.09 23.43 45.37 2.73
1673 1940 1.764571 TATGCAGCATACCGGGGGAC 61.765 60.000 11.33 0.00 0.00 4.46
1674 1941 3.792736 GCAGCATACCGGGGGACA 61.793 66.667 6.32 0.00 0.00 4.02
1676 1943 2.040606 AGCATACCGGGGGACACT 59.959 61.111 6.32 0.00 0.00 3.55
1677 1944 1.046472 CAGCATACCGGGGGACACTA 61.046 60.000 6.32 0.00 0.00 2.74
1678 1945 0.759436 AGCATACCGGGGGACACTAG 60.759 60.000 6.32 0.00 0.00 2.57
1679 1946 1.047034 GCATACCGGGGGACACTAGT 61.047 60.000 6.32 0.00 0.00 2.57
1680 1947 1.755265 GCATACCGGGGGACACTAGTA 60.755 57.143 6.32 0.00 0.00 1.82
1681 1948 2.236766 CATACCGGGGGACACTAGTAG 58.763 57.143 6.32 0.00 0.00 2.57
1682 1949 1.595311 TACCGGGGGACACTAGTAGA 58.405 55.000 6.32 0.00 0.00 2.59
1683 1950 0.706433 ACCGGGGGACACTAGTAGAA 59.294 55.000 6.32 0.00 0.00 2.10
1684 1951 1.077663 ACCGGGGGACACTAGTAGAAA 59.922 52.381 6.32 0.00 0.00 2.52
1685 1952 2.181975 CCGGGGGACACTAGTAGAAAA 58.818 52.381 3.59 0.00 0.00 2.29
1686 1953 2.093816 CCGGGGGACACTAGTAGAAAAC 60.094 54.545 3.59 0.00 0.00 2.43
1687 1954 2.564062 CGGGGGACACTAGTAGAAAACA 59.436 50.000 3.59 0.00 0.00 2.83
1688 1955 3.368116 CGGGGGACACTAGTAGAAAACAG 60.368 52.174 3.59 0.00 0.00 3.16
1689 1956 3.055312 GGGGGACACTAGTAGAAAACAGG 60.055 52.174 3.59 0.00 0.00 4.00
1690 1957 3.055312 GGGGACACTAGTAGAAAACAGGG 60.055 52.174 3.59 0.00 0.00 4.45
1691 1958 3.597255 GGACACTAGTAGAAAACAGGGC 58.403 50.000 3.59 0.00 0.00 5.19
1692 1959 3.261137 GGACACTAGTAGAAAACAGGGCT 59.739 47.826 3.59 0.00 0.00 5.19
1693 1960 4.262938 GGACACTAGTAGAAAACAGGGCTT 60.263 45.833 3.59 0.00 0.00 4.35
1694 1961 5.306114 ACACTAGTAGAAAACAGGGCTTT 57.694 39.130 3.59 0.00 0.00 3.51
1695 1962 5.063880 ACACTAGTAGAAAACAGGGCTTTG 58.936 41.667 3.59 0.00 0.00 2.77
1696 1963 4.455877 CACTAGTAGAAAACAGGGCTTTGG 59.544 45.833 3.59 0.00 0.00 3.28
1697 1964 3.595190 AGTAGAAAACAGGGCTTTGGT 57.405 42.857 0.00 0.00 0.00 3.67
1698 1965 3.487372 AGTAGAAAACAGGGCTTTGGTC 58.513 45.455 0.00 0.00 0.00 4.02
1699 1966 2.755952 AGAAAACAGGGCTTTGGTCT 57.244 45.000 0.00 0.00 0.00 3.85
1700 1967 3.876309 AGAAAACAGGGCTTTGGTCTA 57.124 42.857 0.00 0.00 0.00 2.59
1701 1968 3.756117 AGAAAACAGGGCTTTGGTCTAG 58.244 45.455 0.00 0.00 0.00 2.43
1702 1969 2.586648 AAACAGGGCTTTGGTCTAGG 57.413 50.000 0.00 0.00 0.00 3.02
1703 1970 0.038310 AACAGGGCTTTGGTCTAGGC 59.962 55.000 0.00 0.00 37.45 3.93
1704 1971 0.842467 ACAGGGCTTTGGTCTAGGCT 60.842 55.000 0.00 0.00 38.20 4.58
1705 1972 0.329596 CAGGGCTTTGGTCTAGGCTT 59.670 55.000 0.00 0.00 38.20 4.35
1706 1973 0.329596 AGGGCTTTGGTCTAGGCTTG 59.670 55.000 0.00 0.00 38.20 4.01
1707 1974 0.681243 GGGCTTTGGTCTAGGCTTGG 60.681 60.000 0.00 0.00 38.20 3.61
1708 1975 1.315981 GGCTTTGGTCTAGGCTTGGC 61.316 60.000 0.00 0.00 35.48 4.52
1719 1986 3.530067 GCTTGGCCAGCCCATTAG 58.470 61.111 5.11 0.00 44.89 1.73
1720 1987 1.380380 GCTTGGCCAGCCCATTAGT 60.380 57.895 5.11 0.00 44.89 2.24
1721 1988 1.387295 GCTTGGCCAGCCCATTAGTC 61.387 60.000 5.11 0.00 44.89 2.59
1722 1989 0.753111 CTTGGCCAGCCCATTAGTCC 60.753 60.000 5.11 0.00 44.89 3.85
1723 1990 2.195956 GGCCAGCCCATTAGTCCC 59.804 66.667 0.00 0.00 0.00 4.46
1724 1991 2.203209 GCCAGCCCATTAGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
1725 1992 2.510906 CCAGCCCATTAGTCCCGG 59.489 66.667 0.00 0.00 0.00 5.73
1726 1993 2.375345 CCAGCCCATTAGTCCCGGT 61.375 63.158 0.00 0.00 0.00 5.28
1727 1994 1.607612 CAGCCCATTAGTCCCGGTT 59.392 57.895 0.00 0.00 0.00 4.44
1728 1995 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
1729 1996 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
1730 1997 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
1731 1998 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
1732 1999 1.134491 CCCATTAGTCCCGGTTCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
1733 2000 1.553248 CCATTAGTCCCGGTTCAGTCA 59.447 52.381 0.00 0.00 0.00 3.41
1734 2001 2.618053 CATTAGTCCCGGTTCAGTCAC 58.382 52.381 0.00 0.00 0.00 3.67
1735 2002 0.599558 TTAGTCCCGGTTCAGTCACG 59.400 55.000 0.00 0.00 0.00 4.35
1736 2003 0.250858 TAGTCCCGGTTCAGTCACGA 60.251 55.000 0.00 0.00 0.00 4.35
1737 2004 1.111116 AGTCCCGGTTCAGTCACGAA 61.111 55.000 0.00 0.00 0.00 3.85
1738 2005 0.942884 GTCCCGGTTCAGTCACGAAC 60.943 60.000 0.00 4.51 43.75 3.95
1743 2010 3.980583 GTTCAGTCACGAACCAGGA 57.019 52.632 0.00 0.00 39.52 3.86
1744 2011 1.499049 GTTCAGTCACGAACCAGGAC 58.501 55.000 0.00 0.00 39.52 3.85
1745 2012 0.391597 TTCAGTCACGAACCAGGACC 59.608 55.000 0.00 0.00 31.99 4.46
1746 2013 1.004918 CAGTCACGAACCAGGACCC 60.005 63.158 0.00 0.00 31.99 4.46
1747 2014 1.458777 AGTCACGAACCAGGACCCA 60.459 57.895 0.00 0.00 31.99 4.51
1748 2015 0.836400 AGTCACGAACCAGGACCCAT 60.836 55.000 0.00 0.00 31.99 4.00
1749 2016 0.673644 GTCACGAACCAGGACCCATG 60.674 60.000 0.00 0.00 0.00 3.66
1750 2017 1.377202 CACGAACCAGGACCCATGG 60.377 63.158 4.14 4.14 43.87 3.66
1751 2018 2.272146 CGAACCAGGACCCATGGG 59.728 66.667 30.23 30.23 42.48 4.00
1762 2029 2.846532 CCATGGGGGCATAGGTCC 59.153 66.667 2.85 0.00 38.40 4.46
1768 2035 2.509422 GGGCATAGGTCCCGGTTC 59.491 66.667 0.00 0.00 33.43 3.62
1769 2036 2.108362 GGCATAGGTCCCGGTTCG 59.892 66.667 0.00 0.00 0.00 3.95
1770 2037 2.728435 GGCATAGGTCCCGGTTCGT 61.728 63.158 0.00 0.00 0.00 3.85
1771 2038 1.520787 GCATAGGTCCCGGTTCGTG 60.521 63.158 0.00 0.00 0.00 4.35
1772 2039 1.952102 GCATAGGTCCCGGTTCGTGA 61.952 60.000 0.00 0.00 0.00 4.35
1773 2040 0.102481 CATAGGTCCCGGTTCGTGAG 59.898 60.000 0.00 0.00 0.00 3.51
1774 2041 1.673808 ATAGGTCCCGGTTCGTGAGC 61.674 60.000 0.00 0.00 32.55 4.26
1775 2042 4.754667 GGTCCCGGTTCGTGAGCC 62.755 72.222 0.00 0.00 0.00 4.70
1776 2043 4.754667 GTCCCGGTTCGTGAGCCC 62.755 72.222 0.00 0.00 0.00 5.19
1778 2045 4.760047 CCCGGTTCGTGAGCCCAG 62.760 72.222 0.00 0.00 0.00 4.45
1779 2046 4.760047 CCGGTTCGTGAGCCCAGG 62.760 72.222 0.00 0.00 0.00 4.45
1780 2047 4.760047 CGGTTCGTGAGCCCAGGG 62.760 72.222 0.00 0.00 0.00 4.45
1781 2048 4.410400 GGTTCGTGAGCCCAGGGG 62.410 72.222 7.91 3.48 38.57 4.79
1805 2072 4.109675 CGGGCCTCGTGGGGAATT 62.110 66.667 0.84 0.00 35.12 2.17
1806 2073 2.440247 GGGCCTCGTGGGGAATTG 60.440 66.667 0.84 0.00 35.12 2.32
1807 2074 2.440247 GGCCTCGTGGGGAATTGG 60.440 66.667 5.54 0.00 35.12 3.16
1808 2075 2.355115 GCCTCGTGGGGAATTGGT 59.645 61.111 5.54 0.00 35.12 3.67
1809 2076 1.749258 GCCTCGTGGGGAATTGGTC 60.749 63.158 5.54 0.00 35.12 4.02
1818 2085 3.588742 GGAATTGGTCCCGGTTCAT 57.411 52.632 0.00 0.00 41.10 2.57
1819 2086 1.847328 GGAATTGGTCCCGGTTCATT 58.153 50.000 0.00 0.00 41.10 2.57
1820 2087 2.176045 GGAATTGGTCCCGGTTCATTT 58.824 47.619 0.00 0.00 41.10 2.32
1821 2088 2.094234 GGAATTGGTCCCGGTTCATTTG 60.094 50.000 0.00 0.00 41.10 2.32
1822 2089 2.302587 ATTGGTCCCGGTTCATTTGT 57.697 45.000 0.00 0.00 0.00 2.83
1823 2090 1.611519 TTGGTCCCGGTTCATTTGTC 58.388 50.000 0.00 0.00 0.00 3.18
1824 2091 0.250989 TGGTCCCGGTTCATTTGTCC 60.251 55.000 0.00 0.00 0.00 4.02
1825 2092 0.963856 GGTCCCGGTTCATTTGTCCC 60.964 60.000 0.00 0.00 0.00 4.46
1826 2093 0.963856 GTCCCGGTTCATTTGTCCCC 60.964 60.000 0.00 0.00 0.00 4.81
1827 2094 1.137594 TCCCGGTTCATTTGTCCCCT 61.138 55.000 0.00 0.00 0.00 4.79
1828 2095 0.251608 CCCGGTTCATTTGTCCCCTT 60.252 55.000 0.00 0.00 0.00 3.95
1829 2096 1.627864 CCGGTTCATTTGTCCCCTTT 58.372 50.000 0.00 0.00 0.00 3.11
1830 2097 1.272212 CCGGTTCATTTGTCCCCTTTG 59.728 52.381 0.00 0.00 0.00 2.77
1831 2098 1.272212 CGGTTCATTTGTCCCCTTTGG 59.728 52.381 0.00 0.00 0.00 3.28
1832 2099 2.325484 GGTTCATTTGTCCCCTTTGGT 58.675 47.619 0.00 0.00 34.77 3.67
1833 2100 2.299013 GGTTCATTTGTCCCCTTTGGTC 59.701 50.000 0.00 0.00 34.77 4.02
1834 2101 2.299013 GTTCATTTGTCCCCTTTGGTCC 59.701 50.000 0.00 0.00 34.77 4.46
1835 2102 1.203125 TCATTTGTCCCCTTTGGTCCC 60.203 52.381 0.00 0.00 34.77 4.46
1836 2103 0.251608 ATTTGTCCCCTTTGGTCCCG 60.252 55.000 0.00 0.00 34.77 5.14
1837 2104 2.360439 TTTGTCCCCTTTGGTCCCGG 62.360 60.000 0.00 0.00 34.77 5.73
1838 2105 3.254617 GTCCCCTTTGGTCCCGGT 61.255 66.667 0.00 0.00 34.77 5.28
1839 2106 2.450897 TCCCCTTTGGTCCCGGTT 60.451 61.111 0.00 0.00 34.77 4.44
1840 2107 2.035155 CCCCTTTGGTCCCGGTTC 59.965 66.667 0.00 0.00 0.00 3.62
1841 2108 2.035155 CCCTTTGGTCCCGGTTCC 59.965 66.667 0.00 2.55 0.00 3.62
1842 2109 2.836187 CCCTTTGGTCCCGGTTCCA 61.836 63.158 10.26 10.26 0.00 3.53
1843 2110 1.303317 CCTTTGGTCCCGGTTCCAG 60.303 63.158 13.29 5.11 35.05 3.86
1844 2111 1.758592 CTTTGGTCCCGGTTCCAGA 59.241 57.895 13.29 9.35 35.05 3.86
1845 2112 0.605589 CTTTGGTCCCGGTTCCAGAC 60.606 60.000 13.29 7.03 35.05 3.51
1846 2113 2.386064 TTTGGTCCCGGTTCCAGACG 62.386 60.000 13.29 0.00 35.05 4.18
1847 2114 4.754667 GGTCCCGGTTCCAGACGC 62.755 72.222 0.00 0.00 0.00 5.19
1850 2117 4.367023 CCCGGTTCCAGACGCGAA 62.367 66.667 15.93 0.00 0.00 4.70
1851 2118 3.110178 CCGGTTCCAGACGCGAAC 61.110 66.667 15.93 6.02 39.12 3.95
1854 2121 3.110178 GTTCCAGACGCGAACCGG 61.110 66.667 15.93 8.60 42.52 5.28
1855 2122 4.367023 TTCCAGACGCGAACCGGG 62.367 66.667 15.93 11.81 45.13 5.73
1858 2125 4.052229 CAGACGCGAACCGGGACT 62.052 66.667 15.93 6.51 43.59 3.85
1859 2126 2.360350 AGACGCGAACCGGGACTA 60.360 61.111 15.93 0.00 41.63 2.59
1860 2127 1.973281 AGACGCGAACCGGGACTAA 60.973 57.895 15.93 0.00 41.63 2.24
1861 2128 1.140375 GACGCGAACCGGGACTAAT 59.860 57.895 15.93 0.00 42.31 1.73
1862 2129 1.143969 GACGCGAACCGGGACTAATG 61.144 60.000 15.93 0.00 42.31 1.90
1863 2130 1.881252 CGCGAACCGGGACTAATGG 60.881 63.158 6.32 0.00 42.31 3.16
1864 2131 1.523032 GCGAACCGGGACTAATGGG 60.523 63.158 6.32 0.00 0.00 4.00
1865 2132 1.523032 CGAACCGGGACTAATGGGC 60.523 63.158 6.32 0.00 0.00 5.36
1866 2133 1.153025 GAACCGGGACTAATGGGCC 60.153 63.158 6.32 0.00 44.23 5.80
1867 2134 1.618447 AACCGGGACTAATGGGCCT 60.618 57.895 6.32 0.00 44.42 5.19
1868 2135 1.632965 AACCGGGACTAATGGGCCTC 61.633 60.000 6.32 0.00 44.42 4.70
1869 2136 2.421739 CGGGACTAATGGGCCTCG 59.578 66.667 4.53 0.00 44.42 4.63
1870 2137 2.111251 GGGACTAATGGGCCTCGC 59.889 66.667 4.53 0.00 44.42 5.03
1871 2138 2.444256 GGGACTAATGGGCCTCGCT 61.444 63.158 4.53 0.00 44.42 4.93
1872 2139 1.069935 GGACTAATGGGCCTCGCTC 59.930 63.158 4.53 0.00 40.87 5.03
1873 2140 1.069935 GACTAATGGGCCTCGCTCC 59.930 63.158 4.53 0.00 0.00 4.70
1874 2141 1.383248 ACTAATGGGCCTCGCTCCT 60.383 57.895 4.53 0.00 0.00 3.69
1875 2142 1.070445 CTAATGGGCCTCGCTCCTG 59.930 63.158 4.53 0.00 0.00 3.86
1876 2143 2.388890 CTAATGGGCCTCGCTCCTGG 62.389 65.000 4.53 0.00 0.00 4.45
1883 2150 4.020617 CTCGCTCCTGGCCCACAA 62.021 66.667 0.00 0.00 37.74 3.33
1884 2151 4.329545 TCGCTCCTGGCCCACAAC 62.330 66.667 0.00 0.00 37.74 3.32
1886 2153 4.284550 GCTCCTGGCCCACAACCA 62.285 66.667 0.00 0.00 35.40 3.67
1887 2154 2.765969 CTCCTGGCCCACAACCAT 59.234 61.111 0.00 0.00 36.36 3.55
1888 2155 1.077265 CTCCTGGCCCACAACCATT 59.923 57.895 0.00 0.00 36.36 3.16
1889 2156 1.228831 TCCTGGCCCACAACCATTG 60.229 57.895 0.00 0.00 36.36 2.82
1890 2157 2.285024 CCTGGCCCACAACCATTGG 61.285 63.158 0.00 0.00 36.36 3.16
1891 2158 1.533753 CTGGCCCACAACCATTGGT 60.534 57.895 1.37 1.37 36.36 3.67
1892 2159 1.532794 TGGCCCACAACCATTGGTC 60.533 57.895 9.22 0.00 33.12 4.02
1893 2160 2.282783 GGCCCACAACCATTGGTCC 61.283 63.158 9.22 0.71 33.12 4.46
1894 2161 2.282783 GCCCACAACCATTGGTCCC 61.283 63.158 9.22 0.00 33.12 4.46
1895 2162 1.976474 CCCACAACCATTGGTCCCG 60.976 63.158 9.22 3.64 33.12 5.14
1896 2163 1.074072 CCACAACCATTGGTCCCGA 59.926 57.895 9.22 0.00 33.12 5.14
1897 2164 0.323360 CCACAACCATTGGTCCCGAT 60.323 55.000 9.22 0.00 33.12 4.18
1898 2165 1.544724 CACAACCATTGGTCCCGATT 58.455 50.000 9.22 0.00 33.12 3.34
1899 2166 1.472480 CACAACCATTGGTCCCGATTC 59.528 52.381 9.22 0.00 33.12 2.52
1900 2167 0.732571 CAACCATTGGTCCCGATTCG 59.267 55.000 9.22 0.00 33.12 3.34
1901 2168 0.326927 AACCATTGGTCCCGATTCGT 59.673 50.000 9.22 0.00 33.12 3.85
1902 2169 0.392461 ACCATTGGTCCCGATTCGTG 60.392 55.000 1.37 0.00 0.00 4.35
1903 2170 1.095228 CCATTGGTCCCGATTCGTGG 61.095 60.000 5.20 6.31 0.00 4.94
1904 2171 1.451387 ATTGGTCCCGATTCGTGGC 60.451 57.895 5.20 0.00 0.00 5.01
1905 2172 1.910580 ATTGGTCCCGATTCGTGGCT 61.911 55.000 5.20 0.00 0.00 4.75
1906 2173 2.511600 GGTCCCGATTCGTGGCTG 60.512 66.667 5.20 0.00 0.00 4.85
1907 2174 2.511600 GTCCCGATTCGTGGCTGG 60.512 66.667 5.20 0.00 0.00 4.85
1908 2175 2.682136 TCCCGATTCGTGGCTGGA 60.682 61.111 5.20 1.18 0.00 3.86
1909 2176 2.267642 CCCGATTCGTGGCTGGAA 59.732 61.111 5.20 0.00 0.00 3.53
1910 2177 2.106683 CCCGATTCGTGGCTGGAAC 61.107 63.158 5.20 0.00 0.00 3.62
1911 2178 2.106683 CCGATTCGTGGCTGGAACC 61.107 63.158 5.20 0.00 0.00 3.62
1912 2179 2.452813 CGATTCGTGGCTGGAACCG 61.453 63.158 0.00 0.00 0.00 4.44
1913 2180 2.046314 ATTCGTGGCTGGAACCGG 60.046 61.111 0.00 0.00 0.00 5.28
1914 2181 3.622060 ATTCGTGGCTGGAACCGGG 62.622 63.158 6.32 0.00 0.00 5.73
1917 2184 4.717313 GTGGCTGGAACCGGGACC 62.717 72.222 6.32 9.52 0.00 4.46
1919 2186 3.961414 GGCTGGAACCGGGACCAA 61.961 66.667 19.53 7.08 35.67 3.67
1920 2187 2.114411 GCTGGAACCGGGACCAAA 59.886 61.111 19.53 2.10 35.67 3.28
1921 2188 1.971695 GCTGGAACCGGGACCAAAG 60.972 63.158 19.53 11.91 35.67 2.77
1922 2189 1.303317 CTGGAACCGGGACCAAAGG 60.303 63.158 19.53 7.64 35.67 3.11
1923 2190 2.035155 GGAACCGGGACCAAAGGG 59.965 66.667 6.32 0.00 41.29 3.95
1924 2191 2.035155 GAACCGGGACCAAAGGGG 59.965 66.667 6.32 0.00 44.81 4.79
1925 2192 3.578968 GAACCGGGACCAAAGGGGG 62.579 68.421 6.32 0.00 42.91 5.40
1941 2208 2.588439 GGGCCTTAGTCCCGGTTC 59.412 66.667 0.84 0.00 33.43 3.62
1942 2209 2.588439 GGCCTTAGTCCCGGTTCC 59.412 66.667 0.00 0.00 0.00 3.62
1943 2210 2.295602 GGCCTTAGTCCCGGTTCCA 61.296 63.158 0.00 0.00 0.00 3.53
1944 2211 1.221021 GCCTTAGTCCCGGTTCCAG 59.779 63.158 0.00 0.00 0.00 3.86
1945 2212 1.221021 CCTTAGTCCCGGTTCCAGC 59.779 63.158 0.00 0.00 0.00 4.85
1946 2213 1.221021 CTTAGTCCCGGTTCCAGCC 59.779 63.158 0.00 0.00 0.00 4.85
1947 2214 1.536907 TTAGTCCCGGTTCCAGCCA 60.537 57.895 0.00 0.00 0.00 4.75
1948 2215 1.833787 TTAGTCCCGGTTCCAGCCAC 61.834 60.000 0.00 0.00 0.00 5.01
1951 2218 4.323477 CCCGGTTCCAGCCACGAA 62.323 66.667 0.00 0.00 0.00 3.85
1952 2219 3.047877 CCGGTTCCAGCCACGAAC 61.048 66.667 0.00 0.66 39.12 3.95
1955 2222 3.047877 GTTCCAGCCACGAACCGG 61.048 66.667 0.00 0.00 34.75 5.28
1956 2223 4.323477 TTCCAGCCACGAACCGGG 62.323 66.667 6.32 0.00 0.00 5.73
1961 2228 4.629523 GCCACGAACCGGGACCAA 62.630 66.667 6.32 0.00 28.17 3.67
1962 2229 2.349755 CCACGAACCGGGACCAAT 59.650 61.111 6.32 0.00 28.17 3.16
1963 2230 2.038269 CCACGAACCGGGACCAATG 61.038 63.158 6.32 0.00 28.17 2.82
1964 2231 1.004320 CACGAACCGGGACCAATGA 60.004 57.895 6.32 0.00 28.17 2.57
1965 2232 1.019278 CACGAACCGGGACCAATGAG 61.019 60.000 6.32 0.00 28.17 2.90
1966 2233 1.449601 CGAACCGGGACCAATGAGG 60.450 63.158 6.32 0.00 45.67 3.86
1986 2253 4.650754 GGTGCCTATATATACACCCTCG 57.349 50.000 16.55 0.00 45.56 4.63
1987 2254 3.181478 GGTGCCTATATATACACCCTCGC 60.181 52.174 16.55 1.16 45.56 5.03
1988 2255 3.028850 TGCCTATATATACACCCTCGCC 58.971 50.000 0.00 0.00 0.00 5.54
1989 2256 2.364647 GCCTATATATACACCCTCGCCC 59.635 54.545 0.00 0.00 0.00 6.13
1990 2257 2.621998 CCTATATATACACCCTCGCCCG 59.378 54.545 0.00 0.00 0.00 6.13
1991 2258 0.822164 ATATATACACCCTCGCCCGC 59.178 55.000 0.00 0.00 0.00 6.13
1992 2259 1.588824 TATATACACCCTCGCCCGCG 61.589 60.000 0.00 0.00 41.35 6.46
1993 2260 3.930024 TATATACACCCTCGCCCGCGA 62.930 57.143 8.23 11.79 46.87 5.87
2045 2312 6.773685 AGGTTATTAATGGCGCACCTATTTTA 59.226 34.615 10.83 0.00 32.66 1.52
2497 2766 2.108168 CTCCCTCCGTCCAAGAATACA 58.892 52.381 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.429692 TCCTGTGTATTGTTCAACATAAGGTG 59.570 38.462 0.00 0.00 35.44 4.00
40 41 4.979335 TGGTTCATCCTGTGTATTGTTCA 58.021 39.130 0.00 0.00 37.07 3.18
61 62 7.390440 TGGTCATTTTAACTTGTCAGGTATCTG 59.610 37.037 0.00 0.00 42.21 2.90
67 68 6.478673 GGTTTTGGTCATTTTAACTTGTCAGG 59.521 38.462 0.00 0.00 0.00 3.86
69 70 6.070767 TGGGTTTTGGTCATTTTAACTTGTCA 60.071 34.615 0.00 0.00 0.00 3.58
94 95 1.212935 GCCAGTTCATATGGTGGACCT 59.787 52.381 18.56 0.00 36.98 3.85
109 110 3.308188 GGGTGTATTAGGTTTGAGCCAGT 60.308 47.826 0.00 0.00 0.00 4.00
188 190 6.043590 TGCATATTGTCCCTGTAGAGAATCAT 59.956 38.462 0.00 0.00 37.82 2.45
194 196 3.812053 GCTTGCATATTGTCCCTGTAGAG 59.188 47.826 0.00 0.00 0.00 2.43
220 222 6.570186 AAGCAATGCGTTATTGATCAGAAACA 60.570 34.615 17.44 9.52 44.15 2.83
221 223 5.801947 AAGCAATGCGTTATTGATCAGAAAC 59.198 36.000 15.62 10.65 44.15 2.78
246 248 7.105588 ACACTTGCAATATACAGTCTGATCAA 58.894 34.615 6.91 0.00 0.00 2.57
253 255 7.602517 AGAGAAACACTTGCAATATACAGTC 57.397 36.000 0.00 0.00 0.00 3.51
254 256 9.102757 CATAGAGAAACACTTGCAATATACAGT 57.897 33.333 0.00 0.00 0.00 3.55
255 257 9.317936 TCATAGAGAAACACTTGCAATATACAG 57.682 33.333 0.00 0.00 0.00 2.74
256 258 9.836864 ATCATAGAGAAACACTTGCAATATACA 57.163 29.630 0.00 0.00 0.00 2.29
261 263 8.680903 CCTTTATCATAGAGAAACACTTGCAAT 58.319 33.333 0.00 0.00 0.00 3.56
262 264 7.882791 TCCTTTATCATAGAGAAACACTTGCAA 59.117 33.333 0.00 0.00 0.00 4.08
263 265 7.394016 TCCTTTATCATAGAGAAACACTTGCA 58.606 34.615 0.00 0.00 0.00 4.08
264 266 7.849804 TCCTTTATCATAGAGAAACACTTGC 57.150 36.000 0.00 0.00 0.00 4.01
339 341 7.783042 ACCAGTGTCCTACTAGCTAATTAAAG 58.217 38.462 0.00 0.00 37.60 1.85
361 607 2.975536 CGGAGCCGGTTTCTACCA 59.024 61.111 1.90 0.00 45.31 3.25
393 639 1.827399 AACACGCCCCAAGTCTCGAT 61.827 55.000 0.00 0.00 0.00 3.59
394 640 2.035237 AAACACGCCCCAAGTCTCGA 62.035 55.000 0.00 0.00 0.00 4.04
395 641 1.597027 AAACACGCCCCAAGTCTCG 60.597 57.895 0.00 0.00 0.00 4.04
472 719 0.038166 GGCCCAACAGTGAATCCAGA 59.962 55.000 0.00 0.00 0.00 3.86
532 779 2.165301 CCGATCCGAGCGTTTCCAC 61.165 63.158 5.19 0.00 0.00 4.02
620 873 1.072965 GATTTCCATCTCCCGCCATCT 59.927 52.381 0.00 0.00 0.00 2.90
674 927 0.110486 GTGAGCAAGTGAAAGGGGGA 59.890 55.000 0.00 0.00 0.00 4.81
687 940 0.830648 GTAGTGGCTATGGGTGAGCA 59.169 55.000 0.00 0.00 41.98 4.26
711 966 3.451540 GGTGAGGTAGTAGGGAAGAAAGG 59.548 52.174 0.00 0.00 0.00 3.11
747 1002 2.359214 TCTAGCGCAGATCTGAAATCGT 59.641 45.455 27.04 12.22 0.00 3.73
916 1182 3.695830 AAGCACCGATCTAACAAAGGA 57.304 42.857 0.00 0.00 0.00 3.36
998 1264 0.319040 CCTCATCCGTGCGTCCATAG 60.319 60.000 0.00 0.00 0.00 2.23
1080 1346 1.209128 CAGCACGACGAACAACTCTT 58.791 50.000 0.00 0.00 0.00 2.85
1134 1400 0.397254 GGATCCTCTCCTGTTCCCGA 60.397 60.000 3.84 0.00 41.29 5.14
1178 1444 0.171231 CAGAGCCTCGACGTCATTGA 59.829 55.000 17.16 3.84 0.00 2.57
1280 1547 0.819259 TTGCTCTTCCACACTGGTGC 60.819 55.000 0.17 0.00 43.88 5.01
1311 1578 2.825532 GTTATGGCCAACAACATGGAGT 59.174 45.455 22.37 1.01 43.54 3.85
1364 1631 3.320256 CGAGATGGTCTCCATTGATCTCA 59.680 47.826 13.78 0.00 45.26 3.27
1386 1653 1.443802 GCACCTGCTTGAAGTACCTC 58.556 55.000 0.00 0.00 38.21 3.85
1419 1686 4.666512 GGATCATCTCTCCTCTAAGCTCT 58.333 47.826 0.00 0.00 0.00 4.09
1441 1708 2.060383 TCTGGCCAGATGGTCTCCG 61.060 63.158 32.00 2.75 41.34 4.63
1590 1857 1.134610 GCCCCAATGCAATCCTGAAAG 60.135 52.381 0.00 0.00 0.00 2.62
1634 1901 3.527507 ACTGTGACCTAGGAACTCTGA 57.472 47.619 17.98 0.00 41.75 3.27
1655 1922 2.772191 TCCCCCGGTATGCTGCAT 60.772 61.111 20.18 20.18 0.00 3.96
1666 1933 2.564062 TGTTTTCTACTAGTGTCCCCCG 59.436 50.000 5.39 0.00 0.00 5.73
1673 1940 4.455877 CCAAAGCCCTGTTTTCTACTAGTG 59.544 45.833 5.39 0.00 0.00 2.74
1674 1941 4.104261 ACCAAAGCCCTGTTTTCTACTAGT 59.896 41.667 0.00 0.00 0.00 2.57
1676 1943 4.349930 AGACCAAAGCCCTGTTTTCTACTA 59.650 41.667 0.00 0.00 0.00 1.82
1677 1944 3.138468 AGACCAAAGCCCTGTTTTCTACT 59.862 43.478 0.00 0.00 0.00 2.57
1678 1945 3.487372 AGACCAAAGCCCTGTTTTCTAC 58.513 45.455 0.00 0.00 0.00 2.59
1679 1946 3.876309 AGACCAAAGCCCTGTTTTCTA 57.124 42.857 0.00 0.00 0.00 2.10
1680 1947 2.755952 AGACCAAAGCCCTGTTTTCT 57.244 45.000 0.00 0.00 0.00 2.52
1681 1948 2.820197 CCTAGACCAAAGCCCTGTTTTC 59.180 50.000 0.00 0.00 0.00 2.29
1682 1949 2.876581 CCTAGACCAAAGCCCTGTTTT 58.123 47.619 0.00 0.00 0.00 2.43
1683 1950 1.547901 GCCTAGACCAAAGCCCTGTTT 60.548 52.381 0.00 0.00 0.00 2.83
1684 1951 0.038310 GCCTAGACCAAAGCCCTGTT 59.962 55.000 0.00 0.00 0.00 3.16
1685 1952 0.842467 AGCCTAGACCAAAGCCCTGT 60.842 55.000 0.00 0.00 0.00 4.00
1686 1953 0.329596 AAGCCTAGACCAAAGCCCTG 59.670 55.000 0.00 0.00 0.00 4.45
1687 1954 0.329596 CAAGCCTAGACCAAAGCCCT 59.670 55.000 0.00 0.00 0.00 5.19
1688 1955 0.681243 CCAAGCCTAGACCAAAGCCC 60.681 60.000 0.00 0.00 0.00 5.19
1689 1956 1.315981 GCCAAGCCTAGACCAAAGCC 61.316 60.000 0.00 0.00 0.00 4.35
1690 1957 1.315981 GGCCAAGCCTAGACCAAAGC 61.316 60.000 0.00 0.00 46.69 3.51
1691 1958 2.873797 GGCCAAGCCTAGACCAAAG 58.126 57.895 0.00 0.00 46.69 2.77
1703 1970 0.753111 GGACTAATGGGCTGGCCAAG 60.753 60.000 27.56 21.95 37.98 3.61
1704 1971 1.306296 GGACTAATGGGCTGGCCAA 59.694 57.895 27.56 10.85 37.98 4.52
1705 1972 2.689691 GGGACTAATGGGCTGGCCA 61.690 63.158 26.08 26.08 37.98 5.36
1706 1973 2.195956 GGGACTAATGGGCTGGCC 59.804 66.667 14.23 14.23 0.00 5.36
1707 1974 2.203209 CGGGACTAATGGGCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
1708 1975 1.921869 AACCGGGACTAATGGGCTGG 61.922 60.000 6.32 0.00 0.00 4.85
1709 1976 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
1710 1977 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
1711 1978 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
1712 1979 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
1713 1980 1.553248 TGACTGAACCGGGACTAATGG 59.447 52.381 6.32 0.00 0.00 3.16
1714 1981 2.618053 GTGACTGAACCGGGACTAATG 58.382 52.381 6.32 0.00 0.00 1.90
1715 1982 1.203994 CGTGACTGAACCGGGACTAAT 59.796 52.381 6.32 0.00 0.00 1.73
1716 1983 0.599558 CGTGACTGAACCGGGACTAA 59.400 55.000 6.32 0.00 0.00 2.24
1717 1984 0.250858 TCGTGACTGAACCGGGACTA 60.251 55.000 6.32 0.00 0.00 2.59
1718 1985 1.111116 TTCGTGACTGAACCGGGACT 61.111 55.000 6.32 0.00 0.00 3.85
1719 1986 0.942884 GTTCGTGACTGAACCGGGAC 60.943 60.000 6.32 0.00 41.88 4.46
1720 1987 1.364901 GTTCGTGACTGAACCGGGA 59.635 57.895 6.32 0.00 41.88 5.14
1721 1988 3.946907 GTTCGTGACTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
1725 1992 1.499049 GTCCTGGTTCGTGACTGAAC 58.501 55.000 10.38 10.38 45.91 3.18
1726 1993 0.391597 GGTCCTGGTTCGTGACTGAA 59.608 55.000 0.00 0.00 0.00 3.02
1727 1994 1.469335 GGGTCCTGGTTCGTGACTGA 61.469 60.000 0.00 0.00 0.00 3.41
1728 1995 1.004918 GGGTCCTGGTTCGTGACTG 60.005 63.158 0.00 0.00 0.00 3.51
1729 1996 0.836400 ATGGGTCCTGGTTCGTGACT 60.836 55.000 0.00 0.00 0.00 3.41
1730 1997 0.673644 CATGGGTCCTGGTTCGTGAC 60.674 60.000 0.00 0.00 0.00 3.67
1731 1998 1.676968 CATGGGTCCTGGTTCGTGA 59.323 57.895 0.00 0.00 0.00 4.35
1732 1999 1.377202 CCATGGGTCCTGGTTCGTG 60.377 63.158 2.85 0.00 0.00 4.35
1733 2000 2.602676 CCCATGGGTCCTGGTTCGT 61.603 63.158 23.93 0.00 31.44 3.85
1734 2001 2.272146 CCCATGGGTCCTGGTTCG 59.728 66.667 23.93 0.00 31.44 3.95
1735 2002 2.683475 CCCCATGGGTCCTGGTTC 59.317 66.667 29.33 0.00 38.25 3.62
1745 2012 2.845345 GGGACCTATGCCCCCATGG 61.845 68.421 4.14 4.14 39.81 3.66
1746 2013 2.846532 GGGACCTATGCCCCCATG 59.153 66.667 0.00 0.00 39.81 3.66
1747 2014 2.854032 CGGGACCTATGCCCCCAT 60.854 66.667 0.00 0.00 42.92 4.00
1750 2017 3.094498 AACCGGGACCTATGCCCC 61.094 66.667 6.32 0.00 42.92 5.80
1751 2018 2.509422 GAACCGGGACCTATGCCC 59.491 66.667 6.32 0.00 42.41 5.36
1752 2019 2.108362 CGAACCGGGACCTATGCC 59.892 66.667 6.32 0.00 0.00 4.40
1753 2020 1.520787 CACGAACCGGGACCTATGC 60.521 63.158 6.32 0.00 28.17 3.14
1754 2021 0.102481 CTCACGAACCGGGACCTATG 59.898 60.000 6.32 0.00 32.99 2.23
1755 2022 1.673808 GCTCACGAACCGGGACCTAT 61.674 60.000 6.32 0.00 32.99 2.57
1756 2023 2.345760 GCTCACGAACCGGGACCTA 61.346 63.158 6.32 0.00 32.99 3.08
1757 2024 3.692406 GCTCACGAACCGGGACCT 61.692 66.667 6.32 0.00 32.99 3.85
1758 2025 4.754667 GGCTCACGAACCGGGACC 62.755 72.222 6.32 0.00 32.99 4.46
1759 2026 4.754667 GGGCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 32.99 4.46
1761 2028 4.760047 CTGGGCTCACGAACCGGG 62.760 72.222 6.32 0.00 0.00 5.73
1762 2029 4.760047 CCTGGGCTCACGAACCGG 62.760 72.222 0.00 0.00 0.00 5.28
1763 2030 4.760047 CCCTGGGCTCACGAACCG 62.760 72.222 0.00 0.00 0.00 4.44
1764 2031 4.410400 CCCCTGGGCTCACGAACC 62.410 72.222 7.39 0.00 0.00 3.62
1765 2032 4.410400 CCCCCTGGGCTCACGAAC 62.410 72.222 7.39 0.00 35.35 3.95
1788 2055 4.109675 AATTCCCCACGAGGCCCG 62.110 66.667 11.48 11.48 45.44 6.13
1789 2056 2.440247 CAATTCCCCACGAGGCCC 60.440 66.667 0.00 0.00 0.00 5.80
1790 2057 2.440247 CCAATTCCCCACGAGGCC 60.440 66.667 0.00 0.00 0.00 5.19
1791 2058 1.749258 GACCAATTCCCCACGAGGC 60.749 63.158 0.00 0.00 0.00 4.70
1792 2059 1.077716 GGACCAATTCCCCACGAGG 60.078 63.158 0.00 0.00 38.70 4.63
1793 2060 4.637771 GGACCAATTCCCCACGAG 57.362 61.111 0.00 0.00 38.70 4.18
1800 2067 1.847328 AATGAACCGGGACCAATTCC 58.153 50.000 6.32 0.00 45.00 3.01
1801 2068 2.560981 ACAAATGAACCGGGACCAATTC 59.439 45.455 6.32 0.00 0.00 2.17
1802 2069 2.560981 GACAAATGAACCGGGACCAATT 59.439 45.455 6.32 0.00 0.00 2.32
1803 2070 2.167662 GACAAATGAACCGGGACCAAT 58.832 47.619 6.32 0.00 0.00 3.16
1804 2071 1.611519 GACAAATGAACCGGGACCAA 58.388 50.000 6.32 0.00 0.00 3.67
1805 2072 0.250989 GGACAAATGAACCGGGACCA 60.251 55.000 6.32 0.00 0.00 4.02
1806 2073 0.963856 GGGACAAATGAACCGGGACC 60.964 60.000 6.32 0.00 0.00 4.46
1807 2074 0.963856 GGGGACAAATGAACCGGGAC 60.964 60.000 6.32 0.00 0.00 4.46
1808 2075 1.137594 AGGGGACAAATGAACCGGGA 61.138 55.000 6.32 0.00 0.00 5.14
1809 2076 0.251608 AAGGGGACAAATGAACCGGG 60.252 55.000 6.32 0.00 0.00 5.73
1810 2077 1.272212 CAAAGGGGACAAATGAACCGG 59.728 52.381 0.00 0.00 0.00 5.28
1811 2078 1.272212 CCAAAGGGGACAAATGAACCG 59.728 52.381 0.00 0.00 40.01 4.44
1812 2079 2.299013 GACCAAAGGGGACAAATGAACC 59.701 50.000 0.00 0.00 41.15 3.62
1813 2080 2.299013 GGACCAAAGGGGACAAATGAAC 59.701 50.000 0.00 0.00 41.15 3.18
1814 2081 2.604139 GGACCAAAGGGGACAAATGAA 58.396 47.619 0.00 0.00 41.15 2.57
1815 2082 1.203125 GGGACCAAAGGGGACAAATGA 60.203 52.381 0.00 0.00 41.15 2.57
1816 2083 1.266178 GGGACCAAAGGGGACAAATG 58.734 55.000 0.00 0.00 41.15 2.32
1817 2084 0.251608 CGGGACCAAAGGGGACAAAT 60.252 55.000 0.00 0.00 41.15 2.32
1818 2085 1.151908 CGGGACCAAAGGGGACAAA 59.848 57.895 0.00 0.00 41.15 2.83
1819 2086 2.836187 CCGGGACCAAAGGGGACAA 61.836 63.158 0.00 0.00 41.15 3.18
1820 2087 3.253838 CCGGGACCAAAGGGGACA 61.254 66.667 0.00 0.00 41.15 4.02
1821 2088 2.759641 GAACCGGGACCAAAGGGGAC 62.760 65.000 6.32 0.00 41.15 4.46
1822 2089 2.450897 AACCGGGACCAAAGGGGA 60.451 61.111 6.32 0.00 41.15 4.81
1823 2090 2.035155 GAACCGGGACCAAAGGGG 59.965 66.667 6.32 0.00 44.81 4.79
1824 2091 2.035155 GGAACCGGGACCAAAGGG 59.965 66.667 6.32 0.00 41.29 3.95
1825 2092 1.303317 CTGGAACCGGGACCAAAGG 60.303 63.158 19.53 7.64 35.67 3.11
1826 2093 0.605589 GTCTGGAACCGGGACCAAAG 60.606 60.000 19.53 11.22 35.67 2.77
1827 2094 1.452801 GTCTGGAACCGGGACCAAA 59.547 57.895 19.53 7.14 35.67 3.28
1828 2095 2.874664 CGTCTGGAACCGGGACCAA 61.875 63.158 19.53 10.24 35.67 3.67
1829 2096 3.307906 CGTCTGGAACCGGGACCA 61.308 66.667 18.36 18.36 34.81 4.02
1830 2097 4.754667 GCGTCTGGAACCGGGACC 62.755 72.222 6.32 9.52 0.00 4.46
1833 2100 4.367023 TTCGCGTCTGGAACCGGG 62.367 66.667 6.32 0.00 38.24 5.73
1834 2101 3.110178 GTTCGCGTCTGGAACCGG 61.110 66.667 5.77 0.00 38.23 5.28
1837 2104 3.110178 CCGGTTCGCGTCTGGAAC 61.110 66.667 20.92 11.58 42.32 3.62
1838 2105 4.367023 CCCGGTTCGCGTCTGGAA 62.367 66.667 24.94 3.53 33.49 3.53
1841 2108 2.203972 TTAGTCCCGGTTCGCGTCTG 62.204 60.000 5.77 5.95 0.00 3.51
1842 2109 1.318158 ATTAGTCCCGGTTCGCGTCT 61.318 55.000 5.77 0.00 0.00 4.18
1843 2110 1.140375 ATTAGTCCCGGTTCGCGTC 59.860 57.895 5.77 0.09 0.00 5.19
1844 2111 1.153706 CATTAGTCCCGGTTCGCGT 60.154 57.895 5.77 0.00 0.00 6.01
1845 2112 1.881252 CCATTAGTCCCGGTTCGCG 60.881 63.158 0.00 0.00 0.00 5.87
1846 2113 1.523032 CCCATTAGTCCCGGTTCGC 60.523 63.158 0.00 0.00 0.00 4.70
1847 2114 1.523032 GCCCATTAGTCCCGGTTCG 60.523 63.158 0.00 0.00 0.00 3.95
1848 2115 1.153025 GGCCCATTAGTCCCGGTTC 60.153 63.158 0.00 0.00 0.00 3.62
1849 2116 1.618447 AGGCCCATTAGTCCCGGTT 60.618 57.895 0.00 0.00 0.00 4.44
1850 2117 2.042261 AGGCCCATTAGTCCCGGT 59.958 61.111 0.00 0.00 0.00 5.28
1851 2118 2.829592 GAGGCCCATTAGTCCCGG 59.170 66.667 0.00 0.00 0.00 5.73
1852 2119 2.421739 CGAGGCCCATTAGTCCCG 59.578 66.667 0.00 0.00 0.00 5.14
1853 2120 2.111251 GCGAGGCCCATTAGTCCC 59.889 66.667 0.00 0.00 0.00 4.46
1854 2121 1.069935 GAGCGAGGCCCATTAGTCC 59.930 63.158 0.00 0.00 0.00 3.85
1855 2122 1.069935 GGAGCGAGGCCCATTAGTC 59.930 63.158 0.00 0.00 0.00 2.59
1856 2123 1.383248 AGGAGCGAGGCCCATTAGT 60.383 57.895 0.00 0.00 0.00 2.24
1857 2124 1.070445 CAGGAGCGAGGCCCATTAG 59.930 63.158 0.00 0.00 0.00 1.73
1858 2125 2.443394 CCAGGAGCGAGGCCCATTA 61.443 63.158 0.00 0.00 0.00 1.90
1859 2126 3.801997 CCAGGAGCGAGGCCCATT 61.802 66.667 0.00 0.00 0.00 3.16
1866 2133 4.020617 TTGTGGGCCAGGAGCGAG 62.021 66.667 6.40 0.00 45.17 5.03
1867 2134 4.329545 GTTGTGGGCCAGGAGCGA 62.330 66.667 6.40 0.00 45.17 4.93
1869 2136 3.590466 ATGGTTGTGGGCCAGGAGC 62.590 63.158 6.40 9.05 39.65 4.70
1870 2137 1.077265 AATGGTTGTGGGCCAGGAG 59.923 57.895 6.40 0.00 39.65 3.69
1871 2138 1.228831 CAATGGTTGTGGGCCAGGA 60.229 57.895 6.40 0.00 39.65 3.86
1872 2139 2.285024 CCAATGGTTGTGGGCCAGG 61.285 63.158 6.40 0.00 39.65 4.45
1873 2140 1.533753 ACCAATGGTTGTGGGCCAG 60.534 57.895 6.40 0.00 40.75 4.85
1874 2141 1.532794 GACCAATGGTTGTGGGCCA 60.533 57.895 6.30 0.00 38.35 5.36
1875 2142 3.376546 GACCAATGGTTGTGGGCC 58.623 61.111 6.30 0.00 38.35 5.80
1876 2143 2.282783 GGGACCAATGGTTGTGGGC 61.283 63.158 6.30 0.00 44.26 5.36
1877 2144 1.976474 CGGGACCAATGGTTGTGGG 60.976 63.158 6.30 0.00 40.75 4.61
1878 2145 0.323360 ATCGGGACCAATGGTTGTGG 60.323 55.000 6.30 0.00 42.28 4.17
1879 2146 1.472480 GAATCGGGACCAATGGTTGTG 59.528 52.381 6.30 0.00 35.25 3.33
1880 2147 1.834188 GAATCGGGACCAATGGTTGT 58.166 50.000 6.30 0.00 35.25 3.32
1881 2148 0.732571 CGAATCGGGACCAATGGTTG 59.267 55.000 6.30 0.00 35.25 3.77
1882 2149 0.326927 ACGAATCGGGACCAATGGTT 59.673 50.000 6.30 0.00 35.25 3.67
1883 2150 0.392461 CACGAATCGGGACCAATGGT 60.392 55.000 3.74 3.74 39.44 3.55
1884 2151 1.095228 CCACGAATCGGGACCAATGG 61.095 60.000 6.42 0.00 28.17 3.16
1885 2152 1.714899 GCCACGAATCGGGACCAATG 61.715 60.000 6.42 0.00 28.17 2.82
1886 2153 1.451387 GCCACGAATCGGGACCAAT 60.451 57.895 6.42 0.00 28.17 3.16
1887 2154 2.046700 GCCACGAATCGGGACCAA 60.047 61.111 6.42 0.00 28.17 3.67
1888 2155 3.000819 AGCCACGAATCGGGACCA 61.001 61.111 6.42 0.00 28.17 4.02
1889 2156 2.511600 CAGCCACGAATCGGGACC 60.512 66.667 6.42 0.00 28.17 4.46
1890 2157 2.511600 CCAGCCACGAATCGGGAC 60.512 66.667 6.42 0.00 28.17 4.46
1891 2158 2.287274 TTCCAGCCACGAATCGGGA 61.287 57.895 6.42 0.00 28.17 5.14
1892 2159 2.106683 GTTCCAGCCACGAATCGGG 61.107 63.158 7.80 1.60 0.00 5.14
1893 2160 2.106683 GGTTCCAGCCACGAATCGG 61.107 63.158 7.80 0.00 0.00 4.18
1894 2161 2.452813 CGGTTCCAGCCACGAATCG 61.453 63.158 0.00 0.00 37.49 3.34
1895 2162 2.106683 CCGGTTCCAGCCACGAATC 61.107 63.158 0.00 0.00 0.00 2.52
1896 2163 2.046314 CCGGTTCCAGCCACGAAT 60.046 61.111 0.00 0.00 0.00 3.34
1897 2164 4.323477 CCCGGTTCCAGCCACGAA 62.323 66.667 0.00 0.00 0.00 3.85
1900 2167 4.717313 GGTCCCGGTTCCAGCCAC 62.717 72.222 0.00 0.00 0.00 5.01
1902 2169 3.501040 TTTGGTCCCGGTTCCAGCC 62.501 63.158 13.29 1.56 35.05 4.85
1903 2170 1.971695 CTTTGGTCCCGGTTCCAGC 60.972 63.158 13.29 0.00 35.05 4.85
1904 2171 1.303317 CCTTTGGTCCCGGTTCCAG 60.303 63.158 13.29 5.11 35.05 3.86
1905 2172 2.836187 CCCTTTGGTCCCGGTTCCA 61.836 63.158 10.26 10.26 0.00 3.53
1906 2173 2.035155 CCCTTTGGTCCCGGTTCC 59.965 66.667 0.00 2.55 0.00 3.62
1907 2174 2.035155 CCCCTTTGGTCCCGGTTC 59.965 66.667 0.00 0.00 0.00 3.62
1908 2175 3.586454 CCCCCTTTGGTCCCGGTT 61.586 66.667 0.00 0.00 0.00 4.44
1923 2190 3.013327 AACCGGGACTAAGGCCCC 61.013 66.667 6.32 0.00 42.92 5.80
1924 2191 2.588439 GAACCGGGACTAAGGCCC 59.412 66.667 6.32 0.00 42.41 5.80
1925 2192 2.253403 CTGGAACCGGGACTAAGGCC 62.253 65.000 6.32 0.00 0.00 5.19
1926 2193 1.221021 CTGGAACCGGGACTAAGGC 59.779 63.158 6.32 0.00 0.00 4.35
1927 2194 1.221021 GCTGGAACCGGGACTAAGG 59.779 63.158 6.32 0.00 0.00 2.69
1928 2195 1.221021 GGCTGGAACCGGGACTAAG 59.779 63.158 6.32 0.00 0.00 2.18
1929 2196 1.536907 TGGCTGGAACCGGGACTAA 60.537 57.895 6.32 0.00 0.00 2.24
1930 2197 2.120940 TGGCTGGAACCGGGACTA 59.879 61.111 6.32 0.00 0.00 2.59
1931 2198 3.637273 GTGGCTGGAACCGGGACT 61.637 66.667 6.32 0.00 0.00 3.85
1934 2201 4.323477 TTCGTGGCTGGAACCGGG 62.323 66.667 6.32 0.00 0.00 5.73
1935 2202 3.047877 GTTCGTGGCTGGAACCGG 61.048 66.667 0.00 0.00 38.23 5.28
1938 2205 3.047877 CCGGTTCGTGGCTGGAAC 61.048 66.667 11.23 11.23 42.32 3.62
1939 2206 4.323477 CCCGGTTCGTGGCTGGAA 62.323 66.667 0.00 0.00 34.35 3.53
1944 2211 3.912745 ATTGGTCCCGGTTCGTGGC 62.913 63.158 0.00 0.00 0.00 5.01
1945 2212 2.038269 CATTGGTCCCGGTTCGTGG 61.038 63.158 0.00 0.00 0.00 4.94
1946 2213 1.004320 TCATTGGTCCCGGTTCGTG 60.004 57.895 0.00 0.00 0.00 4.35
1947 2214 1.295423 CTCATTGGTCCCGGTTCGT 59.705 57.895 0.00 0.00 0.00 3.85
1948 2215 1.449601 CCTCATTGGTCCCGGTTCG 60.450 63.158 0.00 0.00 0.00 3.95
1949 2216 4.637771 CCTCATTGGTCCCGGTTC 57.362 61.111 0.00 0.00 0.00 3.62
1958 2225 6.349300 GGTGTATATATAGGCACCTCATTGG 58.651 44.000 21.82 0.00 45.64 3.16
1966 2233 3.181478 GGCGAGGGTGTATATATAGGCAC 60.181 52.174 9.66 9.66 0.00 5.01
1967 2234 3.028850 GGCGAGGGTGTATATATAGGCA 58.971 50.000 0.00 0.00 0.00 4.75
1968 2235 2.364647 GGGCGAGGGTGTATATATAGGC 59.635 54.545 0.00 0.00 0.00 3.93
1969 2236 2.621998 CGGGCGAGGGTGTATATATAGG 59.378 54.545 0.00 0.00 0.00 2.57
1970 2237 2.034305 GCGGGCGAGGGTGTATATATAG 59.966 54.545 0.00 0.00 0.00 1.31
1971 2238 2.026641 GCGGGCGAGGGTGTATATATA 58.973 52.381 0.00 0.00 0.00 0.86
1972 2239 0.822164 GCGGGCGAGGGTGTATATAT 59.178 55.000 0.00 0.00 0.00 0.86
1973 2240 1.588824 CGCGGGCGAGGGTGTATATA 61.589 60.000 7.38 0.00 42.83 0.86
1974 2241 2.927580 CGCGGGCGAGGGTGTATAT 61.928 63.158 7.38 0.00 42.83 0.86
1975 2242 3.598715 CGCGGGCGAGGGTGTATA 61.599 66.667 7.38 0.00 42.83 1.47
1990 2257 4.074526 TGGGAGTGCTCTGCTCGC 62.075 66.667 7.25 7.54 43.47 5.03
1991 2258 1.315981 TAGTGGGAGTGCTCTGCTCG 61.316 60.000 7.25 0.00 34.00 5.03
1992 2259 0.174617 GTAGTGGGAGTGCTCTGCTC 59.825 60.000 7.25 1.84 32.53 4.26
1993 2260 0.252012 AGTAGTGGGAGTGCTCTGCT 60.252 55.000 7.25 0.00 32.53 4.24
1994 2261 1.407258 CTAGTAGTGGGAGTGCTCTGC 59.593 57.143 0.00 0.00 0.00 4.26
1995 2262 3.006112 TCTAGTAGTGGGAGTGCTCTG 57.994 52.381 0.00 0.00 0.00 3.35
1996 2263 3.741245 TTCTAGTAGTGGGAGTGCTCT 57.259 47.619 0.00 0.00 0.00 4.09
1997 2264 4.021368 TGTTTTCTAGTAGTGGGAGTGCTC 60.021 45.833 0.00 0.00 0.00 4.26
1998 2265 3.901844 TGTTTTCTAGTAGTGGGAGTGCT 59.098 43.478 0.00 0.00 0.00 4.40
1999 2266 4.246458 CTGTTTTCTAGTAGTGGGAGTGC 58.754 47.826 0.00 0.00 0.00 4.40
2000 2267 4.283722 ACCTGTTTTCTAGTAGTGGGAGTG 59.716 45.833 0.00 0.00 0.00 3.51
2001 2268 4.490706 ACCTGTTTTCTAGTAGTGGGAGT 58.509 43.478 0.00 0.00 0.00 3.85
2045 2312 2.332063 AATGTGCGCCATTAGTAGCT 57.668 45.000 18.60 0.00 42.03 3.32
2109 2376 2.139888 AATGGCGCGTCAAATGTGCA 62.140 50.000 21.03 0.00 42.10 4.57
2120 2387 0.317160 TCTGGGATAGTAATGGCGCG 59.683 55.000 0.00 0.00 0.00 6.86
2497 2766 1.216990 ATTTCCTCCCCTTGCGAGAT 58.783 50.000 1.22 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.