Multiple sequence alignment - TraesCS1D01G324000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G324000 chr1D 100.000 3143 0 0 1 3143 416467652 416470794 0.000000e+00 5805.0
1 TraesCS1D01G324000 chr1B 86.001 2443 167 60 797 3143 563024670 563027033 0.000000e+00 2455.0
2 TraesCS1D01G324000 chr1B 81.781 494 84 4 91 579 623897147 623897639 2.920000e-110 409.0
3 TraesCS1D01G324000 chr1A 87.684 1153 65 25 633 1722 513732383 513733521 0.000000e+00 1271.0
4 TraesCS1D01G324000 chr1A 82.304 842 71 28 1789 2592 513733543 513734344 0.000000e+00 658.0
5 TraesCS1D01G324000 chr1A 93.243 74 4 1 2891 2964 513734558 513734630 1.190000e-19 108.0
6 TraesCS1D01G324000 chr4D 81.400 500 85 6 82 577 99207604 99207109 4.880000e-108 401.0
7 TraesCS1D01G324000 chr4A 80.876 502 90 4 82 577 709620266 709619765 1.060000e-104 390.0
8 TraesCS1D01G324000 chr4A 85.393 89 10 3 1 87 661486916 661486829 4.320000e-14 89.8
9 TraesCS1D01G324000 chr7D 81.420 479 76 7 92 564 621202376 621201905 2.290000e-101 379.0
10 TraesCS1D01G324000 chr7D 79.915 473 82 10 84 547 190143391 190143859 5.020000e-88 335.0
11 TraesCS1D01G324000 chr7A 79.641 501 96 4 82 577 149028868 149029367 3.860000e-94 355.0
12 TraesCS1D01G324000 chr7A 79.276 497 92 9 80 568 576864717 576864224 1.400000e-88 337.0
13 TraesCS1D01G324000 chr7A 78.501 507 100 7 80 579 658203187 658203691 1.090000e-84 324.0
14 TraesCS1D01G324000 chr5D 78.884 502 100 4 81 577 528905968 528905468 5.020000e-88 335.0
15 TraesCS1D01G324000 chr3D 90.361 83 7 1 1 82 13975162 13975080 1.190000e-19 108.0
16 TraesCS1D01G324000 chr3D 86.747 83 10 1 1 82 290287565 290287647 1.200000e-14 91.6
17 TraesCS1D01G324000 chr3D 90.323 62 5 1 1215 1276 427631944 427631884 2.600000e-11 80.5
18 TraesCS1D01G324000 chr6D 87.059 85 10 1 1 84 348044833 348044749 9.280000e-16 95.3
19 TraesCS1D01G324000 chr7B 85.227 88 11 2 1 87 728324130 728324044 4.320000e-14 89.8
20 TraesCS1D01G324000 chr5A 86.585 82 10 1 1 81 555211378 555211459 4.320000e-14 89.8
21 TraesCS1D01G324000 chr5A 85.393 89 8 4 1 86 569527416 569527502 1.550000e-13 87.9
22 TraesCS1D01G324000 chr5A 84.884 86 12 1 1 85 311913699 311913784 5.590000e-13 86.1
23 TraesCS1D01G324000 chr4B 86.585 82 10 1 1 81 642190395 642190314 4.320000e-14 89.8
24 TraesCS1D01G324000 chr3B 88.235 68 7 1 1215 1282 559109922 559109856 2.600000e-11 80.5
25 TraesCS1D01G324000 chr3A 93.750 48 3 0 1226 1273 558515671 558515718 4.350000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G324000 chr1D 416467652 416470794 3142 False 5805 5805 100.000000 1 3143 1 chr1D.!!$F1 3142
1 TraesCS1D01G324000 chr1B 563024670 563027033 2363 False 2455 2455 86.001000 797 3143 1 chr1B.!!$F1 2346
2 TraesCS1D01G324000 chr1A 513732383 513734630 2247 False 679 1271 87.743667 633 2964 3 chr1A.!!$F1 2331
3 TraesCS1D01G324000 chr4A 709619765 709620266 501 True 390 390 80.876000 82 577 1 chr4A.!!$R2 495
4 TraesCS1D01G324000 chr7A 658203187 658203691 504 False 324 324 78.501000 80 579 1 chr7A.!!$F2 499
5 TraesCS1D01G324000 chr5D 528905468 528905968 500 True 335 335 78.884000 81 577 1 chr5D.!!$R1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 811 0.028902 AACTTCGCCGTGCAAAGAAC 59.971 50.0 2.16 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2678 2815 0.101399 CCTCCCACGAATCTCAGACG 59.899 60.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.094090 GTTGTAGTAGACAGTCGGGAAG 57.906 50.000 0.00 0.00 39.88 3.46
22 23 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
23 24 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
24 25 2.581216 AGTAGACAGTCGGGAAGTCA 57.419 50.000 0.00 0.00 34.80 3.41
25 26 3.088789 AGTAGACAGTCGGGAAGTCAT 57.911 47.619 0.00 0.00 34.80 3.06
26 27 3.018149 AGTAGACAGTCGGGAAGTCATC 58.982 50.000 0.00 0.00 34.80 2.92
27 28 0.811915 AGACAGTCGGGAAGTCATCG 59.188 55.000 0.00 0.00 34.80 3.84
28 29 0.526662 GACAGTCGGGAAGTCATCGT 59.473 55.000 0.00 0.00 32.68 3.73
29 30 0.243907 ACAGTCGGGAAGTCATCGTG 59.756 55.000 0.00 0.00 0.00 4.35
30 31 0.243907 CAGTCGGGAAGTCATCGTGT 59.756 55.000 0.00 0.00 0.00 4.49
31 32 0.966920 AGTCGGGAAGTCATCGTGTT 59.033 50.000 0.00 0.00 0.00 3.32
32 33 2.094906 CAGTCGGGAAGTCATCGTGTTA 60.095 50.000 0.00 0.00 0.00 2.41
33 34 2.559668 AGTCGGGAAGTCATCGTGTTAA 59.440 45.455 0.00 0.00 0.00 2.01
34 35 2.921754 GTCGGGAAGTCATCGTGTTAAG 59.078 50.000 0.00 0.00 0.00 1.85
35 36 2.821378 TCGGGAAGTCATCGTGTTAAGA 59.179 45.455 0.00 0.00 0.00 2.10
36 37 2.921754 CGGGAAGTCATCGTGTTAAGAC 59.078 50.000 0.00 0.00 0.00 3.01
37 38 3.367087 CGGGAAGTCATCGTGTTAAGACT 60.367 47.826 0.86 0.00 42.72 3.24
38 39 4.174762 GGGAAGTCATCGTGTTAAGACTC 58.825 47.826 0.86 0.00 40.22 3.36
39 40 4.174762 GGAAGTCATCGTGTTAAGACTCC 58.825 47.826 0.86 0.00 40.22 3.85
40 41 4.321750 GGAAGTCATCGTGTTAAGACTCCA 60.322 45.833 0.86 0.00 40.22 3.86
41 42 5.407407 AAGTCATCGTGTTAAGACTCCAT 57.593 39.130 0.86 0.00 40.22 3.41
42 43 6.405508 GGAAGTCATCGTGTTAAGACTCCATA 60.406 42.308 0.86 0.00 40.22 2.74
43 44 6.137794 AGTCATCGTGTTAAGACTCCATAG 57.862 41.667 0.86 0.00 36.69 2.23
44 45 5.067936 AGTCATCGTGTTAAGACTCCATAGG 59.932 44.000 0.86 0.00 36.69 2.57
45 46 5.067413 GTCATCGTGTTAAGACTCCATAGGA 59.933 44.000 0.86 0.00 0.00 2.94
46 47 4.978083 TCGTGTTAAGACTCCATAGGAC 57.022 45.455 0.86 0.00 0.00 3.85
47 48 4.597004 TCGTGTTAAGACTCCATAGGACT 58.403 43.478 0.86 0.00 0.00 3.85
48 49 5.748402 TCGTGTTAAGACTCCATAGGACTA 58.252 41.667 0.86 0.00 0.00 2.59
49 50 6.182627 TCGTGTTAAGACTCCATAGGACTAA 58.817 40.000 0.86 0.00 0.00 2.24
50 51 6.094603 TCGTGTTAAGACTCCATAGGACTAAC 59.905 42.308 0.86 0.00 0.00 2.34
51 52 6.264088 GTGTTAAGACTCCATAGGACTAACG 58.736 44.000 0.00 0.00 0.00 3.18
52 53 5.948162 TGTTAAGACTCCATAGGACTAACGT 59.052 40.000 0.00 0.00 0.00 3.99
53 54 7.066284 GTGTTAAGACTCCATAGGACTAACGTA 59.934 40.741 0.00 0.00 0.00 3.57
54 55 7.066284 TGTTAAGACTCCATAGGACTAACGTAC 59.934 40.741 0.00 0.00 0.00 3.67
55 56 5.370875 AGACTCCATAGGACTAACGTACT 57.629 43.478 0.00 0.00 38.15 2.73
56 57 5.124645 AGACTCCATAGGACTAACGTACTG 58.875 45.833 0.00 0.00 34.42 2.74
57 58 4.205587 ACTCCATAGGACTAACGTACTGG 58.794 47.826 0.00 0.00 34.42 4.00
58 59 4.080129 ACTCCATAGGACTAACGTACTGGA 60.080 45.833 0.00 0.00 34.42 3.86
59 60 4.858850 TCCATAGGACTAACGTACTGGAA 58.141 43.478 0.00 0.00 34.42 3.53
60 61 4.641989 TCCATAGGACTAACGTACTGGAAC 59.358 45.833 0.00 0.00 34.42 3.62
61 62 4.400251 CCATAGGACTAACGTACTGGAACA 59.600 45.833 0.00 0.00 34.42 3.18
62 63 5.105635 CCATAGGACTAACGTACTGGAACAA 60.106 44.000 0.00 0.00 38.70 2.83
63 64 4.248691 AGGACTAACGTACTGGAACAAC 57.751 45.455 0.00 0.00 38.70 3.32
64 65 3.638160 AGGACTAACGTACTGGAACAACA 59.362 43.478 0.00 0.00 38.70 3.33
65 66 3.737774 GGACTAACGTACTGGAACAACAC 59.262 47.826 0.00 0.00 38.70 3.32
66 67 3.721035 ACTAACGTACTGGAACAACACC 58.279 45.455 0.00 0.00 38.70 4.16
67 68 1.574134 AACGTACTGGAACAACACCG 58.426 50.000 0.00 0.00 38.70 4.94
68 69 0.877213 ACGTACTGGAACAACACCGC 60.877 55.000 0.00 0.00 38.70 5.68
69 70 1.562575 CGTACTGGAACAACACCGCC 61.563 60.000 0.00 0.00 38.70 6.13
70 71 1.301087 TACTGGAACAACACCGCCG 60.301 57.895 0.00 0.00 38.70 6.46
71 72 2.030490 TACTGGAACAACACCGCCGT 62.030 55.000 0.00 0.00 38.70 5.68
72 73 2.589442 TGGAACAACACCGCCGTC 60.589 61.111 0.00 0.00 31.92 4.79
73 74 3.708734 GGAACAACACCGCCGTCG 61.709 66.667 0.00 0.00 0.00 5.12
74 75 2.659244 GAACAACACCGCCGTCGA 60.659 61.111 0.00 0.00 38.10 4.20
75 76 2.025418 GAACAACACCGCCGTCGAT 61.025 57.895 0.00 0.00 38.10 3.59
76 77 2.222953 GAACAACACCGCCGTCGATG 62.223 60.000 0.00 0.00 38.10 3.84
77 78 2.431771 CAACACCGCCGTCGATGA 60.432 61.111 6.11 0.00 38.10 2.92
78 79 2.024868 CAACACCGCCGTCGATGAA 61.025 57.895 6.11 0.00 38.10 2.57
79 80 1.736645 AACACCGCCGTCGATGAAG 60.737 57.895 6.11 0.00 38.10 3.02
80 81 2.149803 AACACCGCCGTCGATGAAGA 62.150 55.000 6.11 0.00 38.10 2.87
81 82 1.874019 CACCGCCGTCGATGAAGAG 60.874 63.158 6.11 0.00 38.10 2.85
82 83 2.044555 ACCGCCGTCGATGAAGAGA 61.045 57.895 6.11 0.00 38.10 3.10
83 84 1.138883 CCGCCGTCGATGAAGAGAA 59.861 57.895 6.11 0.00 38.10 2.87
87 88 1.656095 GCCGTCGATGAAGAGAAACTG 59.344 52.381 6.11 0.00 0.00 3.16
89 90 1.656095 CGTCGATGAAGAGAAACTGCC 59.344 52.381 0.00 0.00 0.00 4.85
100 101 5.344743 AGAGAAACTGCCGATCTATTCAA 57.655 39.130 0.00 0.00 0.00 2.69
104 105 5.940470 AGAAACTGCCGATCTATTCAACTTT 59.060 36.000 0.00 0.00 0.00 2.66
124 125 9.764870 CAACTTTAATCATGACAGTACAATGAG 57.235 33.333 0.00 0.00 0.00 2.90
143 144 9.423061 ACAATGAGCACCAGAAATAATAAAAAC 57.577 29.630 0.00 0.00 0.00 2.43
169 170 7.588866 ACATCCAAATCCATATACCACCTAT 57.411 36.000 0.00 0.00 0.00 2.57
192 196 1.341531 ACTACAAGCACTGAAGCGAGT 59.658 47.619 0.00 0.00 40.15 4.18
197 201 0.032130 AGCACTGAAGCGAGTCGAAA 59.968 50.000 18.61 0.00 40.15 3.46
203 207 0.908505 GAAGCGAGTCGAAAGCGTAG 59.091 55.000 18.61 0.00 38.98 3.51
284 289 4.124351 TCGTCGTGCTAAGGCCCG 62.124 66.667 0.00 0.00 40.49 6.13
316 321 1.742411 GCACTAGAATAGCAACCGCCA 60.742 52.381 0.00 0.00 44.39 5.69
321 326 1.702491 GAATAGCAACCGCCACCGAC 61.702 60.000 0.00 0.00 39.83 4.79
331 336 2.095252 GCCACCGACGAAGAGAAGC 61.095 63.158 0.00 0.00 0.00 3.86
335 340 1.093159 ACCGACGAAGAGAAGCGTAT 58.907 50.000 0.00 0.00 41.34 3.06
344 349 4.477780 GAAGAGAAGCGTATATCGGAAGG 58.522 47.826 0.00 0.00 40.26 3.46
350 355 2.755655 AGCGTATATCGGAAGGATCCAG 59.244 50.000 15.82 2.25 46.97 3.86
351 356 2.492484 GCGTATATCGGAAGGATCCAGT 59.508 50.000 15.82 0.04 46.97 4.00
363 368 5.855093 GGAAGGATCCAGTCTAAAGACACAC 60.855 48.000 15.82 0.09 45.79 3.82
394 399 1.664321 AACGAAGACCGGATCCGAGG 61.664 60.000 35.42 21.47 43.93 4.63
400 405 0.250989 GACCGGATCCGAGGAGATCT 60.251 60.000 35.42 8.17 42.02 2.75
414 419 3.195825 AGGAGATCTACCAAAGACAACCG 59.804 47.826 0.00 0.00 36.93 4.44
417 422 0.759959 TCTACCAAAGACAACCGCCA 59.240 50.000 0.00 0.00 0.00 5.69
419 424 2.159382 CTACCAAAGACAACCGCCAAT 58.841 47.619 0.00 0.00 0.00 3.16
420 425 1.408969 ACCAAAGACAACCGCCAATT 58.591 45.000 0.00 0.00 0.00 2.32
426 431 2.513753 AGACAACCGCCAATTGAATCA 58.486 42.857 7.12 0.00 0.00 2.57
427 432 3.091545 AGACAACCGCCAATTGAATCAT 58.908 40.909 7.12 0.00 0.00 2.45
461 466 3.454587 GACACACCTCCACACGCCA 62.455 63.158 0.00 0.00 0.00 5.69
473 479 2.583319 ACGCCATCGACGATGCTG 60.583 61.111 28.45 23.55 38.59 4.41
485 491 1.376466 GATGCTGGACACACCACCT 59.624 57.895 0.00 0.00 44.64 4.00
486 492 0.613260 GATGCTGGACACACCACCTA 59.387 55.000 0.00 0.00 44.64 3.08
506 512 0.324091 GACAGGGACTAGACGGGGAA 60.324 60.000 0.00 0.00 36.02 3.97
509 515 1.838077 CAGGGACTAGACGGGGAAAAT 59.162 52.381 0.00 0.00 36.02 1.82
510 516 1.838077 AGGGACTAGACGGGGAAAATG 59.162 52.381 0.00 0.00 36.02 2.32
523 529 5.127031 ACGGGGAAAATGTTATTCCATCTTG 59.873 40.000 7.53 0.00 46.69 3.02
533 539 2.203126 CCATCTTGAGGGAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
534 540 2.587194 CATCTTGAGGGAGCCGCG 60.587 66.667 0.00 0.00 0.00 6.46
564 570 1.609501 TCCCCGAGGAGGACACAAG 60.610 63.158 0.00 0.00 45.00 3.16
568 574 2.583441 CGAGGAGGACACAAGCCCA 61.583 63.158 0.00 0.00 0.00 5.36
569 575 1.298014 GAGGAGGACACAAGCCCAG 59.702 63.158 0.00 0.00 0.00 4.45
570 576 2.360475 GGAGGACACAAGCCCAGC 60.360 66.667 0.00 0.00 0.00 4.85
579 585 0.746659 ACAAGCCCAGCAAAACTCAC 59.253 50.000 0.00 0.00 0.00 3.51
580 586 0.746063 CAAGCCCAGCAAAACTCACA 59.254 50.000 0.00 0.00 0.00 3.58
581 587 1.136695 CAAGCCCAGCAAAACTCACAA 59.863 47.619 0.00 0.00 0.00 3.33
582 588 1.484038 AGCCCAGCAAAACTCACAAA 58.516 45.000 0.00 0.00 0.00 2.83
583 589 1.830477 AGCCCAGCAAAACTCACAAAA 59.170 42.857 0.00 0.00 0.00 2.44
584 590 2.435437 AGCCCAGCAAAACTCACAAAAT 59.565 40.909 0.00 0.00 0.00 1.82
585 591 3.118298 AGCCCAGCAAAACTCACAAAATT 60.118 39.130 0.00 0.00 0.00 1.82
586 592 3.002553 GCCCAGCAAAACTCACAAAATTG 59.997 43.478 0.00 0.00 0.00 2.32
587 593 4.440880 CCCAGCAAAACTCACAAAATTGA 58.559 39.130 0.00 0.00 0.00 2.57
588 594 5.058490 CCCAGCAAAACTCACAAAATTGAT 58.942 37.500 0.00 0.00 0.00 2.57
589 595 5.178067 CCCAGCAAAACTCACAAAATTGATC 59.822 40.000 0.00 0.00 0.00 2.92
590 596 5.178067 CCAGCAAAACTCACAAAATTGATCC 59.822 40.000 0.00 0.00 0.00 3.36
591 597 5.987347 CAGCAAAACTCACAAAATTGATCCT 59.013 36.000 0.00 0.00 0.00 3.24
592 598 5.987347 AGCAAAACTCACAAAATTGATCCTG 59.013 36.000 0.00 0.00 0.00 3.86
593 599 5.178067 GCAAAACTCACAAAATTGATCCTGG 59.822 40.000 0.00 0.00 0.00 4.45
594 600 4.525912 AACTCACAAAATTGATCCTGGC 57.474 40.909 0.00 0.00 0.00 4.85
595 601 2.827921 ACTCACAAAATTGATCCTGGCC 59.172 45.455 0.00 0.00 0.00 5.36
596 602 2.167075 CTCACAAAATTGATCCTGGCCC 59.833 50.000 0.00 0.00 0.00 5.80
597 603 2.181975 CACAAAATTGATCCTGGCCCT 58.818 47.619 0.00 0.00 0.00 5.19
598 604 2.568509 CACAAAATTGATCCTGGCCCTT 59.431 45.455 0.00 0.00 0.00 3.95
599 605 2.568509 ACAAAATTGATCCTGGCCCTTG 59.431 45.455 0.00 0.00 0.00 3.61
600 606 1.197812 AAATTGATCCTGGCCCTTGC 58.802 50.000 0.00 0.00 0.00 4.01
601 607 0.337428 AATTGATCCTGGCCCTTGCT 59.663 50.000 0.00 0.00 37.74 3.91
602 608 0.396695 ATTGATCCTGGCCCTTGCTG 60.397 55.000 0.00 0.00 37.74 4.41
603 609 2.832201 GATCCTGGCCCTTGCTGC 60.832 66.667 0.00 0.00 37.74 5.25
604 610 4.809496 ATCCTGGCCCTTGCTGCG 62.809 66.667 0.00 0.00 37.74 5.18
613 619 4.809496 CTTGCTGCGGGGATGGCT 62.809 66.667 0.00 0.00 0.00 4.75
614 620 4.802051 TTGCTGCGGGGATGGCTC 62.802 66.667 0.00 0.00 0.00 4.70
621 627 4.434483 GGGGATGGCTCCGTTTTT 57.566 55.556 0.00 0.00 43.11 1.94
648 654 2.027688 GTCTTTGTACTCGCGAAATCCG 59.972 50.000 11.33 0.00 42.21 4.18
656 662 2.395690 GCGAAATCCGTGCGACAG 59.604 61.111 0.00 0.00 41.15 3.51
677 689 7.647907 ACAGAATGCAAATCTTCATTTTGTC 57.352 32.000 2.82 0.00 41.28 3.18
705 717 6.986904 AATATTTGACTCGAAAAGGACCTC 57.013 37.500 0.00 0.00 0.00 3.85
743 755 2.627221 AGCCATGTTACAATGTGCACAA 59.373 40.909 25.72 5.47 0.00 3.33
744 756 2.988493 GCCATGTTACAATGTGCACAAG 59.012 45.455 25.72 21.15 0.00 3.16
747 759 3.706802 TGTTACAATGTGCACAAGGTG 57.293 42.857 25.72 22.65 36.51 4.00
748 760 3.020274 TGTTACAATGTGCACAAGGTGT 58.980 40.909 25.72 26.59 35.75 4.16
759 771 3.065019 CACAAGGTGTGCACTTTACAC 57.935 47.619 19.41 7.14 41.89 2.90
763 775 3.817960 GTGTGCACTTTACACGGTG 57.182 52.632 19.41 6.58 41.03 4.94
764 776 1.011333 GTGTGCACTTTACACGGTGT 58.989 50.000 19.41 18.89 41.03 4.16
765 777 1.004292 GTGTGCACTTTACACGGTGTC 60.004 52.381 18.43 2.63 41.03 3.67
766 778 1.292061 GTGCACTTTACACGGTGTCA 58.708 50.000 18.43 3.63 36.03 3.58
767 779 1.666700 GTGCACTTTACACGGTGTCAA 59.333 47.619 18.43 12.32 36.03 3.18
768 780 2.096174 GTGCACTTTACACGGTGTCAAA 59.904 45.455 18.43 14.38 36.03 2.69
769 781 2.946329 TGCACTTTACACGGTGTCAAAT 59.054 40.909 18.43 0.00 36.03 2.32
770 782 4.024725 GTGCACTTTACACGGTGTCAAATA 60.025 41.667 18.43 0.00 36.03 1.40
771 783 4.212425 TGCACTTTACACGGTGTCAAATAG 59.788 41.667 18.43 10.91 36.03 1.73
772 784 4.378046 GCACTTTACACGGTGTCAAATAGG 60.378 45.833 18.43 4.03 36.03 2.57
773 785 4.753107 CACTTTACACGGTGTCAAATAGGT 59.247 41.667 18.43 4.66 0.00 3.08
774 786 4.992951 ACTTTACACGGTGTCAAATAGGTC 59.007 41.667 18.43 0.00 0.00 3.85
777 789 0.248289 ACGGTGTCAAATAGGTCGGG 59.752 55.000 0.00 0.00 0.00 5.14
785 797 4.758165 TGTCAAATAGGTCGGGAAAACTTC 59.242 41.667 0.00 0.00 0.00 3.01
787 799 2.019948 ATAGGTCGGGAAAACTTCGC 57.980 50.000 0.00 0.00 39.05 4.70
799 811 0.028902 AACTTCGCCGTGCAAAGAAC 59.971 50.000 2.16 0.00 0.00 3.01
804 816 1.539776 CGCCGTGCAAAGAACAAAGC 61.540 55.000 0.00 0.00 0.00 3.51
843 855 3.817647 ACTTTCCACTGAGCAAGAACATC 59.182 43.478 0.00 0.00 0.00 3.06
847 859 2.551721 CCACTGAGCAAGAACATCACCT 60.552 50.000 0.00 0.00 0.00 4.00
948 962 1.183030 TCTCCCACCACACTACCACG 61.183 60.000 0.00 0.00 0.00 4.94
951 965 2.345991 CACCACACTACCACGGGG 59.654 66.667 0.00 0.00 41.29 5.73
952 966 2.926242 ACCACACTACCACGGGGG 60.926 66.667 9.50 0.00 44.81 5.40
1079 1120 1.077212 ACCATCAGACCAGCCATGC 60.077 57.895 0.00 0.00 0.00 4.06
1110 1151 1.773410 GCTAAGCTAAGCTCGGCTAC 58.227 55.000 12.72 4.04 38.25 3.58
1127 1172 0.108329 TACAAGCCCAGTAGAAGCGC 60.108 55.000 0.00 0.00 0.00 5.92
1139 1184 4.295119 AAGCGCGAAGGACGGTGT 62.295 61.111 12.10 0.00 41.69 4.16
1142 1187 2.879462 CGCGAAGGACGGTGTAGC 60.879 66.667 0.00 0.00 42.83 3.58
1209 1254 2.190578 GATGGGAGGAAGGCCGTG 59.809 66.667 0.00 0.00 39.96 4.94
1775 1847 4.512914 GGTGCCTCCCCAGCCATC 62.513 72.222 0.00 0.00 0.00 3.51
1776 1848 4.864334 GTGCCTCCCCAGCCATCG 62.864 72.222 0.00 0.00 0.00 3.84
1827 1899 2.967397 CACGGTCCTCCTACGCAA 59.033 61.111 0.00 0.00 0.00 4.85
1982 2054 3.349927 TGGAATGCTTCATCTTCCTGTG 58.650 45.455 0.00 0.00 39.36 3.66
1986 2058 3.049708 TGCTTCATCTTCCTGTGACAG 57.950 47.619 5.42 5.42 0.00 3.51
1988 2060 3.578282 TGCTTCATCTTCCTGTGACAGTA 59.422 43.478 12.15 0.00 0.00 2.74
1996 2074 3.434940 TCCTGTGACAGTAGCACTAGA 57.565 47.619 12.15 0.00 37.18 2.43
2000 2078 2.820197 TGTGACAGTAGCACTAGACCTG 59.180 50.000 0.00 0.00 37.18 4.00
2001 2079 1.819288 TGACAGTAGCACTAGACCTGC 59.181 52.381 0.00 0.00 34.63 4.85
2002 2080 1.135333 GACAGTAGCACTAGACCTGCC 59.865 57.143 0.00 0.00 35.01 4.85
2003 2081 1.272760 ACAGTAGCACTAGACCTGCCT 60.273 52.381 0.00 0.00 35.01 4.75
2004 2082 1.827969 CAGTAGCACTAGACCTGCCTT 59.172 52.381 0.00 0.00 35.01 4.35
2005 2083 2.104170 AGTAGCACTAGACCTGCCTTC 58.896 52.381 0.00 0.00 35.01 3.46
2006 2084 2.104170 GTAGCACTAGACCTGCCTTCT 58.896 52.381 0.00 0.00 35.01 2.85
2007 2085 1.190643 AGCACTAGACCTGCCTTCTC 58.809 55.000 0.00 0.00 35.01 2.87
2008 2086 1.190643 GCACTAGACCTGCCTTCTCT 58.809 55.000 0.00 0.00 0.00 3.10
2009 2087 1.136110 GCACTAGACCTGCCTTCTCTC 59.864 57.143 0.00 0.00 0.00 3.20
2010 2088 1.403679 CACTAGACCTGCCTTCTCTCG 59.596 57.143 0.00 0.00 0.00 4.04
2011 2089 0.383949 CTAGACCTGCCTTCTCTCGC 59.616 60.000 0.00 0.00 0.00 5.03
2012 2090 0.033991 TAGACCTGCCTTCTCTCGCT 60.034 55.000 0.00 0.00 0.00 4.93
2013 2091 0.902516 AGACCTGCCTTCTCTCGCTT 60.903 55.000 0.00 0.00 0.00 4.68
2014 2092 0.459411 GACCTGCCTTCTCTCGCTTC 60.459 60.000 0.00 0.00 0.00 3.86
2015 2093 1.153469 CCTGCCTTCTCTCGCTTCC 60.153 63.158 0.00 0.00 0.00 3.46
2040 2120 4.878397 AGTAAGTAATCAGTGCTCCATTGC 59.122 41.667 0.00 0.00 0.00 3.56
2041 2121 3.641434 AGTAATCAGTGCTCCATTGCT 57.359 42.857 0.00 0.00 0.00 3.91
2101 2181 2.236146 TGGTGAATGTAATCTCGCTGGT 59.764 45.455 0.00 0.00 0.00 4.00
2127 2207 2.556622 TCTTCTCGGGTTGGAATTTTGC 59.443 45.455 0.00 0.00 0.00 3.68
2144 2224 0.106719 TGCATCCCGGGGAAGAAATC 60.107 55.000 23.50 3.20 34.34 2.17
2147 2227 1.212935 CATCCCGGGGAAGAAATCAGT 59.787 52.381 23.50 0.00 34.34 3.41
2166 2246 1.348036 GTCCCAGCTCTTTGGTGTACT 59.652 52.381 0.00 0.00 42.19 2.73
2168 2248 1.625818 CCCAGCTCTTTGGTGTACTCT 59.374 52.381 0.00 0.00 42.19 3.24
2169 2249 2.613977 CCCAGCTCTTTGGTGTACTCTG 60.614 54.545 0.00 0.00 42.19 3.35
2170 2250 2.037772 CCAGCTCTTTGGTGTACTCTGT 59.962 50.000 0.00 0.00 42.19 3.41
2171 2251 3.258372 CCAGCTCTTTGGTGTACTCTGTA 59.742 47.826 0.00 0.00 42.19 2.74
2172 2252 4.238514 CAGCTCTTTGGTGTACTCTGTAC 58.761 47.826 0.00 1.33 39.17 2.90
2173 2253 3.895656 AGCTCTTTGGTGTACTCTGTACA 59.104 43.478 6.48 6.48 0.00 2.90
2176 2256 4.952460 TCTTTGGTGTACTCTGTACAACC 58.048 43.478 19.21 17.21 34.40 3.77
2185 2265 6.640092 GTGTACTCTGTACAACCACTACTTTC 59.360 42.308 11.46 0.00 0.00 2.62
2194 2274 5.747342 ACAACCACTACTTTCTTTGGTGTA 58.253 37.500 0.00 0.00 41.68 2.90
2196 2276 5.625568 ACCACTACTTTCTTTGGTGTACT 57.374 39.130 0.00 0.00 40.96 2.73
2197 2277 5.608449 ACCACTACTTTCTTTGGTGTACTC 58.392 41.667 0.00 0.00 40.96 2.59
2205 2285 7.506114 ACTTTCTTTGGTGTACTCTGTAATCA 58.494 34.615 0.00 0.00 0.00 2.57
2207 2287 6.665992 TCTTTGGTGTACTCTGTAATCAGT 57.334 37.500 0.00 0.00 41.91 3.41
2208 2288 7.770366 TCTTTGGTGTACTCTGTAATCAGTA 57.230 36.000 0.00 0.00 41.91 2.74
2209 2289 8.185506 TCTTTGGTGTACTCTGTAATCAGTAA 57.814 34.615 0.00 0.00 41.91 2.24
2210 2290 8.812972 TCTTTGGTGTACTCTGTAATCAGTAAT 58.187 33.333 0.00 0.00 41.91 1.89
2211 2291 8.997621 TTTGGTGTACTCTGTAATCAGTAATC 57.002 34.615 0.00 0.00 41.91 1.75
2212 2292 7.956328 TGGTGTACTCTGTAATCAGTAATCT 57.044 36.000 0.00 0.00 41.91 2.40
2213 2293 8.362464 TGGTGTACTCTGTAATCAGTAATCTT 57.638 34.615 0.00 0.00 41.91 2.40
2276 2362 5.528690 GGCATCTCTGTAATGAACTGCATTA 59.471 40.000 0.00 0.00 45.16 1.90
2301 2406 3.707102 ACCTCTTGCCTTCCTAGTACATC 59.293 47.826 0.00 0.00 0.00 3.06
2312 2417 1.600013 CTAGTACATCGACTGCGCTCT 59.400 52.381 9.73 0.00 37.46 4.09
2366 2475 0.679505 TGTTGATCCGATCCGATCCC 59.320 55.000 17.84 10.92 38.32 3.85
2424 2541 0.179048 TGGCATGGTCCATCACGATC 60.179 55.000 0.00 0.00 0.00 3.69
2438 2555 4.467084 GATCAGTTCGCCGGGGCA 62.467 66.667 14.85 0.00 42.06 5.36
2439 2556 3.757248 GATCAGTTCGCCGGGGCAT 62.757 63.158 14.85 0.00 42.06 4.40
2440 2557 3.344137 ATCAGTTCGCCGGGGCATT 62.344 57.895 14.85 0.00 42.06 3.56
2441 2558 3.508840 CAGTTCGCCGGGGCATTC 61.509 66.667 14.85 3.95 42.06 2.67
2442 2559 4.028490 AGTTCGCCGGGGCATTCA 62.028 61.111 14.85 0.00 42.06 2.57
2477 2594 3.508840 CCGCATTCGCCCAGTTCC 61.509 66.667 0.00 0.00 33.11 3.62
2512 2629 2.425124 CTTTGCGTTGCACGTCCG 60.425 61.111 9.76 1.08 44.73 4.79
2513 2630 3.855209 CTTTGCGTTGCACGTCCGG 62.855 63.158 0.00 0.00 44.73 5.14
2559 2694 2.052237 CGTATTCAATGCCCGCGC 60.052 61.111 0.00 0.00 0.00 6.86
2560 2695 2.052237 GTATTCAATGCCCGCGCG 60.052 61.111 25.67 25.67 38.08 6.86
2561 2696 2.512745 TATTCAATGCCCGCGCGT 60.513 55.556 29.95 7.00 38.08 6.01
2562 2697 2.818487 TATTCAATGCCCGCGCGTG 61.818 57.895 29.95 20.15 38.08 5.34
2599 2735 1.694150 ACCGACTGCTATGGTATGCAT 59.306 47.619 3.79 3.79 38.59 3.96
2600 2736 2.071540 CCGACTGCTATGGTATGCATG 58.928 52.381 10.16 0.00 38.59 4.06
2601 2737 1.462283 CGACTGCTATGGTATGCATGC 59.538 52.381 11.82 11.82 38.59 4.06
2622 2759 4.647491 CGAGCGACGTCTGTCTAC 57.353 61.111 14.70 0.00 43.21 2.59
2627 2764 0.025256 GCGACGTCTGTCTACTCGAG 59.975 60.000 14.70 11.84 43.21 4.04
2659 2796 4.254709 TGCAGGCAGGCAGAACGT 62.255 61.111 0.00 0.00 39.25 3.99
2660 2797 3.730761 GCAGGCAGGCAGAACGTG 61.731 66.667 0.00 0.00 37.22 4.49
2661 2798 2.281070 CAGGCAGGCAGAACGTGT 60.281 61.111 0.00 0.00 36.51 4.49
2662 2799 2.281070 AGGCAGGCAGAACGTGTG 60.281 61.111 0.00 0.00 36.51 3.82
2663 2800 4.030452 GGCAGGCAGAACGTGTGC 62.030 66.667 13.49 13.49 40.42 4.57
2664 2801 2.974698 GCAGGCAGAACGTGTGCT 60.975 61.111 19.41 1.96 40.97 4.40
2665 2802 2.959357 GCAGGCAGAACGTGTGCTC 61.959 63.158 19.41 11.53 40.97 4.26
2677 2814 2.358003 GTGCTCTGCTTGCTCCGT 60.358 61.111 0.00 0.00 0.00 4.69
2678 2815 2.047844 TGCTCTGCTTGCTCCGTC 60.048 61.111 0.00 0.00 0.00 4.79
2681 2818 1.803519 CTCTGCTTGCTCCGTCGTC 60.804 63.158 0.00 0.00 0.00 4.20
2683 2820 2.049156 TGCTTGCTCCGTCGTCTG 60.049 61.111 0.00 0.00 0.00 3.51
2690 2827 0.590230 GCTCCGTCGTCTGAGATTCG 60.590 60.000 5.36 0.00 0.00 3.34
2707 2844 2.971452 GTGGGAGGAGACCGTGTC 59.029 66.667 0.00 0.00 0.00 3.67
2807 2950 2.781595 TTTCGCGCCACTCTCCCTTC 62.782 60.000 0.00 0.00 0.00 3.46
2808 2951 4.821589 CGCGCCACTCTCCCTTCC 62.822 72.222 0.00 0.00 0.00 3.46
2809 2952 4.475135 GCGCCACTCTCCCTTCCC 62.475 72.222 0.00 0.00 0.00 3.97
2810 2953 2.685380 CGCCACTCTCCCTTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
2811 2954 2.294078 CGCCACTCTCCCTTCCCTT 61.294 63.158 0.00 0.00 0.00 3.95
2822 2965 4.388499 TTCCCTTCTCCGCCGTGC 62.388 66.667 0.00 0.00 0.00 5.34
2970 3141 2.223377 GGGATTATTTTAGCACGGCGAG 59.777 50.000 16.62 7.03 0.00 5.03
3033 3204 0.392461 GCCACGGTGTGATGGTGTAT 60.392 55.000 7.45 0.00 38.34 2.29
3034 3205 1.134640 GCCACGGTGTGATGGTGTATA 60.135 52.381 7.45 0.00 38.34 1.47
3035 3206 2.546778 CCACGGTGTGATGGTGTATAC 58.453 52.381 7.45 0.00 35.23 1.47
3036 3207 2.167693 CCACGGTGTGATGGTGTATACT 59.832 50.000 7.45 0.00 35.23 2.12
3039 3210 4.018490 ACGGTGTGATGGTGTATACTACA 58.982 43.478 4.17 3.61 36.08 2.74
3041 3212 4.097437 CGGTGTGATGGTGTATACTACAGT 59.903 45.833 4.17 0.00 39.77 3.55
3042 3213 5.393787 CGGTGTGATGGTGTATACTACAGTT 60.394 44.000 4.17 0.00 39.77 3.16
3044 3215 6.395629 GTGTGATGGTGTATACTACAGTTGT 58.604 40.000 4.17 0.00 39.77 3.32
3047 3218 7.395206 TGTGATGGTGTATACTACAGTTGTACT 59.605 37.037 4.17 0.00 39.77 2.73
3064 3246 7.759886 CAGTTGTACTGGTACTACTACGTACTA 59.240 40.741 20.77 0.00 45.48 1.82
3099 3281 1.301401 CGCTGGGACGTTTCTCCAA 60.301 57.895 0.00 0.00 30.97 3.53
3124 3306 4.935630 GCTTTTGCGGTGTACCAC 57.064 55.556 1.50 0.00 35.14 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
3 4 3.341823 TGACTTCCCGACTGTCTACTAC 58.658 50.000 6.21 0.00 0.00 2.73
4 5 3.708403 TGACTTCCCGACTGTCTACTA 57.292 47.619 6.21 0.00 0.00 1.82
7 8 2.014857 CGATGACTTCCCGACTGTCTA 58.985 52.381 6.21 0.00 0.00 2.59
8 9 0.811915 CGATGACTTCCCGACTGTCT 59.188 55.000 6.21 0.00 0.00 3.41
9 10 0.526662 ACGATGACTTCCCGACTGTC 59.473 55.000 0.00 0.00 0.00 3.51
10 11 0.243907 CACGATGACTTCCCGACTGT 59.756 55.000 0.00 0.00 0.00 3.55
11 12 0.243907 ACACGATGACTTCCCGACTG 59.756 55.000 0.00 0.00 0.00 3.51
12 13 0.966920 AACACGATGACTTCCCGACT 59.033 50.000 0.00 0.00 0.00 4.18
13 14 2.642139 TAACACGATGACTTCCCGAC 57.358 50.000 0.00 0.00 0.00 4.79
14 15 2.821378 TCTTAACACGATGACTTCCCGA 59.179 45.455 0.00 0.00 0.00 5.14
15 16 2.921754 GTCTTAACACGATGACTTCCCG 59.078 50.000 0.00 0.00 0.00 5.14
16 17 4.174762 GAGTCTTAACACGATGACTTCCC 58.825 47.826 0.00 0.00 39.53 3.97
17 18 4.174762 GGAGTCTTAACACGATGACTTCC 58.825 47.826 0.00 0.00 39.53 3.46
18 19 4.806330 TGGAGTCTTAACACGATGACTTC 58.194 43.478 0.00 0.00 39.53 3.01
19 20 4.866508 TGGAGTCTTAACACGATGACTT 57.133 40.909 0.00 0.00 39.53 3.01
20 21 5.067936 CCTATGGAGTCTTAACACGATGACT 59.932 44.000 0.00 0.00 41.76 3.41
21 22 5.067413 TCCTATGGAGTCTTAACACGATGAC 59.933 44.000 0.00 0.00 0.00 3.06
22 23 5.067413 GTCCTATGGAGTCTTAACACGATGA 59.933 44.000 0.00 0.00 29.39 2.92
23 24 5.067936 AGTCCTATGGAGTCTTAACACGATG 59.932 44.000 0.00 0.00 27.36 3.84
24 25 5.202004 AGTCCTATGGAGTCTTAACACGAT 58.798 41.667 0.00 0.00 27.36 3.73
25 26 4.597004 AGTCCTATGGAGTCTTAACACGA 58.403 43.478 0.00 0.00 27.36 4.35
26 27 4.985538 AGTCCTATGGAGTCTTAACACG 57.014 45.455 0.00 0.00 27.36 4.49
27 28 6.127786 ACGTTAGTCCTATGGAGTCTTAACAC 60.128 42.308 0.00 0.00 36.65 3.32
28 29 5.948162 ACGTTAGTCCTATGGAGTCTTAACA 59.052 40.000 0.00 0.00 36.65 2.41
29 30 6.448207 ACGTTAGTCCTATGGAGTCTTAAC 57.552 41.667 0.00 0.00 36.65 2.01
30 31 7.281774 CAGTACGTTAGTCCTATGGAGTCTTAA 59.718 40.741 0.00 0.00 36.65 1.85
31 32 6.765036 CAGTACGTTAGTCCTATGGAGTCTTA 59.235 42.308 0.00 0.00 36.65 2.10
32 33 5.589452 CAGTACGTTAGTCCTATGGAGTCTT 59.411 44.000 0.00 0.00 36.65 3.01
33 34 5.124645 CAGTACGTTAGTCCTATGGAGTCT 58.875 45.833 0.00 0.00 36.65 3.24
34 35 4.275443 CCAGTACGTTAGTCCTATGGAGTC 59.725 50.000 0.00 0.00 36.65 3.36
35 36 4.080129 TCCAGTACGTTAGTCCTATGGAGT 60.080 45.833 0.00 0.00 39.02 3.85
36 37 4.458397 TCCAGTACGTTAGTCCTATGGAG 58.542 47.826 0.00 0.00 32.08 3.86
37 38 4.508551 TCCAGTACGTTAGTCCTATGGA 57.491 45.455 0.00 0.00 33.33 3.41
38 39 4.400251 TGTTCCAGTACGTTAGTCCTATGG 59.600 45.833 0.00 0.00 0.00 2.74
39 40 5.571784 TGTTCCAGTACGTTAGTCCTATG 57.428 43.478 0.00 0.00 0.00 2.23
40 41 5.477984 TGTTGTTCCAGTACGTTAGTCCTAT 59.522 40.000 0.00 0.00 0.00 2.57
41 42 4.826733 TGTTGTTCCAGTACGTTAGTCCTA 59.173 41.667 0.00 0.00 0.00 2.94
42 43 3.638160 TGTTGTTCCAGTACGTTAGTCCT 59.362 43.478 0.00 0.00 0.00 3.85
43 44 3.737774 GTGTTGTTCCAGTACGTTAGTCC 59.262 47.826 0.00 0.00 0.00 3.85
44 45 3.737774 GGTGTTGTTCCAGTACGTTAGTC 59.262 47.826 0.00 0.00 0.00 2.59
45 46 3.721035 GGTGTTGTTCCAGTACGTTAGT 58.279 45.455 0.00 0.00 0.00 2.24
46 47 2.727798 CGGTGTTGTTCCAGTACGTTAG 59.272 50.000 0.00 0.00 0.00 2.34
47 48 2.741612 CGGTGTTGTTCCAGTACGTTA 58.258 47.619 0.00 0.00 0.00 3.18
48 49 1.574134 CGGTGTTGTTCCAGTACGTT 58.426 50.000 0.00 0.00 0.00 3.99
49 50 0.877213 GCGGTGTTGTTCCAGTACGT 60.877 55.000 0.00 0.00 0.00 3.57
50 51 1.562575 GGCGGTGTTGTTCCAGTACG 61.563 60.000 0.00 0.00 0.00 3.67
51 52 1.562575 CGGCGGTGTTGTTCCAGTAC 61.563 60.000 0.00 0.00 0.00 2.73
52 53 1.301087 CGGCGGTGTTGTTCCAGTA 60.301 57.895 0.00 0.00 0.00 2.74
53 54 2.590575 CGGCGGTGTTGTTCCAGT 60.591 61.111 0.00 0.00 0.00 4.00
54 55 2.590575 ACGGCGGTGTTGTTCCAG 60.591 61.111 13.24 0.00 0.00 3.86
55 56 2.589442 GACGGCGGTGTTGTTCCA 60.589 61.111 13.24 0.00 0.00 3.53
56 57 3.708734 CGACGGCGGTGTTGTTCC 61.709 66.667 13.24 0.00 0.00 3.62
57 58 2.025418 ATCGACGGCGGTGTTGTTC 61.025 57.895 12.58 0.00 38.28 3.18
58 59 2.029964 ATCGACGGCGGTGTTGTT 59.970 55.556 12.58 0.00 38.28 2.83
59 60 2.736995 CATCGACGGCGGTGTTGT 60.737 61.111 17.83 0.00 43.47 3.32
64 65 1.592400 TTCTCTTCATCGACGGCGGT 61.592 55.000 12.58 0.00 38.28 5.68
65 66 0.457853 TTTCTCTTCATCGACGGCGG 60.458 55.000 12.58 0.00 38.28 6.13
66 67 0.640768 GTTTCTCTTCATCGACGGCG 59.359 55.000 2.87 2.87 39.35 6.46
67 68 1.656095 CAGTTTCTCTTCATCGACGGC 59.344 52.381 0.00 0.00 0.00 5.68
68 69 1.656095 GCAGTTTCTCTTCATCGACGG 59.344 52.381 0.00 0.00 0.00 4.79
69 70 1.656095 GGCAGTTTCTCTTCATCGACG 59.344 52.381 0.00 0.00 0.00 5.12
70 71 1.656095 CGGCAGTTTCTCTTCATCGAC 59.344 52.381 0.00 0.00 0.00 4.20
71 72 1.544246 TCGGCAGTTTCTCTTCATCGA 59.456 47.619 0.00 0.00 0.00 3.59
72 73 1.996292 TCGGCAGTTTCTCTTCATCG 58.004 50.000 0.00 0.00 0.00 3.84
73 74 3.791245 AGATCGGCAGTTTCTCTTCATC 58.209 45.455 0.00 0.00 0.00 2.92
74 75 3.902881 AGATCGGCAGTTTCTCTTCAT 57.097 42.857 0.00 0.00 0.00 2.57
75 76 5.105351 TGAATAGATCGGCAGTTTCTCTTCA 60.105 40.000 12.26 12.26 33.09 3.02
76 77 5.352284 TGAATAGATCGGCAGTTTCTCTTC 58.648 41.667 9.05 9.05 0.00 2.87
77 78 5.344743 TGAATAGATCGGCAGTTTCTCTT 57.655 39.130 0.00 0.00 0.00 2.85
78 79 5.105146 AGTTGAATAGATCGGCAGTTTCTCT 60.105 40.000 0.00 0.00 0.00 3.10
79 80 5.112686 AGTTGAATAGATCGGCAGTTTCTC 58.887 41.667 0.00 0.00 0.00 2.87
80 81 5.091261 AGTTGAATAGATCGGCAGTTTCT 57.909 39.130 0.00 0.00 0.00 2.52
81 82 5.803020 AAGTTGAATAGATCGGCAGTTTC 57.197 39.130 0.00 0.00 0.00 2.78
82 83 7.681939 TTAAAGTTGAATAGATCGGCAGTTT 57.318 32.000 0.00 0.00 0.00 2.66
83 84 7.552687 TGATTAAAGTTGAATAGATCGGCAGTT 59.447 33.333 0.00 0.00 0.00 3.16
87 88 8.012241 GTCATGATTAAAGTTGAATAGATCGGC 58.988 37.037 0.00 0.00 0.00 5.54
100 101 7.607607 TGCTCATTGTACTGTCATGATTAAAGT 59.392 33.333 0.00 3.75 0.00 2.66
104 105 5.817296 GGTGCTCATTGTACTGTCATGATTA 59.183 40.000 0.00 0.00 0.00 1.75
121 122 9.290988 TGTAGTTTTTATTATTTCTGGTGCTCA 57.709 29.630 0.00 0.00 0.00 4.26
124 125 9.516314 GGATGTAGTTTTTATTATTTCTGGTGC 57.484 33.333 0.00 0.00 0.00 5.01
143 144 7.020827 AGGTGGTATATGGATTTGGATGTAG 57.979 40.000 0.00 0.00 0.00 2.74
152 153 7.179966 TGTAGTCGATAGGTGGTATATGGATT 58.820 38.462 0.00 0.00 0.00 3.01
160 161 3.379372 GTGCTTGTAGTCGATAGGTGGTA 59.621 47.826 0.00 0.00 0.00 3.25
169 170 1.666023 CGCTTCAGTGCTTGTAGTCGA 60.666 52.381 0.00 0.00 31.02 4.20
260 264 0.242825 CTTAGCACGACGACTTCCCA 59.757 55.000 0.00 0.00 0.00 4.37
284 289 1.170919 TCTAGTGCGCCGGTCCTATC 61.171 60.000 4.18 0.00 0.00 2.08
293 298 0.938008 GGTTGCTATTCTAGTGCGCC 59.062 55.000 4.18 0.00 0.00 6.53
316 321 1.093159 ATACGCTTCTCTTCGTCGGT 58.907 50.000 0.00 0.00 39.79 4.69
321 326 3.808116 TCCGATATACGCTTCTCTTCG 57.192 47.619 0.00 0.00 41.07 3.79
331 336 4.011023 AGACTGGATCCTTCCGATATACG 58.989 47.826 14.23 0.00 45.89 3.06
335 340 5.535406 GTCTTTAGACTGGATCCTTCCGATA 59.465 44.000 14.23 0.00 41.65 2.92
344 349 2.924290 GCGTGTGTCTTTAGACTGGATC 59.076 50.000 10.92 0.00 44.99 3.36
350 355 4.323868 GTCTATGTGCGTGTGTCTTTAGAC 59.676 45.833 2.92 2.92 44.97 2.59
351 356 4.482386 GTCTATGTGCGTGTGTCTTTAGA 58.518 43.478 0.00 0.00 0.00 2.10
363 368 1.578023 GTCTTCGTTCGTCTATGTGCG 59.422 52.381 0.00 0.00 0.00 5.34
365 370 2.174764 CGGTCTTCGTTCGTCTATGTG 58.825 52.381 0.00 0.00 0.00 3.21
394 399 2.930682 GCGGTTGTCTTTGGTAGATCTC 59.069 50.000 0.00 0.00 34.79 2.75
400 405 2.279935 ATTGGCGGTTGTCTTTGGTA 57.720 45.000 0.00 0.00 0.00 3.25
414 419 3.562505 GATCTCGCATGATTCAATTGGC 58.437 45.455 5.42 0.00 0.00 4.52
417 422 3.470709 ACGGATCTCGCATGATTCAATT 58.529 40.909 0.00 0.00 43.89 2.32
419 424 2.473816 GACGGATCTCGCATGATTCAA 58.526 47.619 0.00 0.00 43.89 2.69
420 425 1.600413 CGACGGATCTCGCATGATTCA 60.600 52.381 0.00 0.00 43.89 2.57
426 431 1.526225 TCTCCGACGGATCTCGCAT 60.526 57.895 18.71 0.00 43.89 4.73
427 432 2.124860 TCTCCGACGGATCTCGCA 60.125 61.111 18.71 0.00 43.89 5.10
461 466 0.458543 GTGTGTCCAGCATCGTCGAT 60.459 55.000 0.75 0.75 0.00 3.59
473 479 0.608640 CCTGTCTAGGTGGTGTGTCC 59.391 60.000 0.00 0.00 39.39 4.02
485 491 0.549950 CCCCGTCTAGTCCCTGTCTA 59.450 60.000 0.00 0.00 0.00 2.59
486 492 1.212934 TCCCCGTCTAGTCCCTGTCT 61.213 60.000 0.00 0.00 0.00 3.41
494 500 5.045432 TGGAATAACATTTTCCCCGTCTAGT 60.045 40.000 0.31 0.00 41.68 2.57
506 512 5.595952 GCTCCCTCAAGATGGAATAACATTT 59.404 40.000 0.00 0.00 0.00 2.32
509 515 3.117888 GGCTCCCTCAAGATGGAATAACA 60.118 47.826 0.00 0.00 0.00 2.41
510 516 3.481453 GGCTCCCTCAAGATGGAATAAC 58.519 50.000 0.00 0.00 0.00 1.89
547 553 2.982130 CTTGTGTCCTCCTCGGGG 59.018 66.667 0.00 0.00 0.00 5.73
550 556 2.266055 GGGCTTGTGTCCTCCTCG 59.734 66.667 0.00 0.00 34.49 4.63
554 560 0.823356 TTTGCTGGGCTTGTGTCCTC 60.823 55.000 0.00 0.00 39.11 3.71
564 570 2.307934 TTTTGTGAGTTTTGCTGGGC 57.692 45.000 0.00 0.00 0.00 5.36
568 574 5.987347 CAGGATCAATTTTGTGAGTTTTGCT 59.013 36.000 0.00 0.00 0.00 3.91
569 575 5.178067 CCAGGATCAATTTTGTGAGTTTTGC 59.822 40.000 0.00 0.00 0.00 3.68
570 576 5.178067 GCCAGGATCAATTTTGTGAGTTTTG 59.822 40.000 0.00 0.00 0.00 2.44
579 585 2.678769 GCAAGGGCCAGGATCAATTTTG 60.679 50.000 6.18 0.00 0.00 2.44
580 586 1.556451 GCAAGGGCCAGGATCAATTTT 59.444 47.619 6.18 0.00 0.00 1.82
581 587 1.197812 GCAAGGGCCAGGATCAATTT 58.802 50.000 6.18 0.00 0.00 1.82
582 588 0.337428 AGCAAGGGCCAGGATCAATT 59.663 50.000 6.18 0.00 42.56 2.32
583 589 0.396695 CAGCAAGGGCCAGGATCAAT 60.397 55.000 6.18 0.00 42.56 2.57
584 590 1.000521 CAGCAAGGGCCAGGATCAA 60.001 57.895 6.18 0.00 42.56 2.57
585 591 2.679092 CAGCAAGGGCCAGGATCA 59.321 61.111 6.18 0.00 42.56 2.92
586 592 2.832201 GCAGCAAGGGCCAGGATC 60.832 66.667 6.18 0.00 42.56 3.36
587 593 4.809496 CGCAGCAAGGGCCAGGAT 62.809 66.667 6.18 0.00 42.56 3.24
596 602 4.809496 AGCCATCCCCGCAGCAAG 62.809 66.667 0.00 0.00 0.00 4.01
597 603 4.802051 GAGCCATCCCCGCAGCAA 62.802 66.667 0.00 0.00 0.00 3.91
604 610 4.434483 AAAAACGGAGCCATCCCC 57.566 55.556 0.00 0.00 43.39 4.81
620 626 6.528014 TTCGCGAGTACAAAGACATAAAAA 57.472 33.333 9.59 0.00 0.00 1.94
621 627 6.528014 TTTCGCGAGTACAAAGACATAAAA 57.472 33.333 9.59 0.00 0.00 1.52
622 628 6.183360 GGATTTCGCGAGTACAAAGACATAAA 60.183 38.462 9.59 0.00 0.00 1.40
623 629 5.290158 GGATTTCGCGAGTACAAAGACATAA 59.710 40.000 9.59 0.00 0.00 1.90
624 630 4.802039 GGATTTCGCGAGTACAAAGACATA 59.198 41.667 9.59 0.00 0.00 2.29
625 631 3.617263 GGATTTCGCGAGTACAAAGACAT 59.383 43.478 9.59 0.00 0.00 3.06
626 632 2.991190 GGATTTCGCGAGTACAAAGACA 59.009 45.455 9.59 0.00 0.00 3.41
627 633 2.027688 CGGATTTCGCGAGTACAAAGAC 59.972 50.000 9.59 0.00 0.00 3.01
628 634 2.256174 CGGATTTCGCGAGTACAAAGA 58.744 47.619 9.59 0.00 0.00 2.52
629 635 1.990563 ACGGATTTCGCGAGTACAAAG 59.009 47.619 9.59 1.72 43.89 2.77
630 636 1.722464 CACGGATTTCGCGAGTACAAA 59.278 47.619 9.59 0.00 43.89 2.83
631 637 1.342555 CACGGATTTCGCGAGTACAA 58.657 50.000 9.59 0.04 43.89 2.41
632 638 1.074319 GCACGGATTTCGCGAGTACA 61.074 55.000 9.59 0.00 43.89 2.90
633 639 1.629504 GCACGGATTTCGCGAGTAC 59.370 57.895 9.59 1.87 43.89 2.73
634 640 4.082192 GCACGGATTTCGCGAGTA 57.918 55.556 9.59 1.53 43.89 2.59
641 647 1.529826 GCATTCTGTCGCACGGATTTC 60.530 52.381 0.00 0.00 32.78 2.17
648 654 2.907910 AGATTTGCATTCTGTCGCAC 57.092 45.000 0.00 0.00 38.00 5.34
652 658 7.597743 AGACAAAATGAAGATTTGCATTCTGTC 59.402 33.333 13.30 13.30 45.75 3.51
656 662 7.878477 TCAGACAAAATGAAGATTTGCATTC 57.122 32.000 0.00 0.00 40.58 2.67
677 689 7.750903 GGTCCTTTTCGAGTCAAATATTTTCAG 59.249 37.037 0.00 0.00 0.00 3.02
705 717 1.004080 CTGTGTCTGCAGGGTCCTG 60.004 63.158 15.13 12.42 46.15 3.86
743 755 0.179468 ACCGTGTAAAGTGCACACCT 59.821 50.000 21.04 5.05 42.68 4.00
744 756 0.306533 CACCGTGTAAAGTGCACACC 59.693 55.000 21.04 3.86 42.68 4.16
747 759 1.292061 TGACACCGTGTAAAGTGCAC 58.708 50.000 9.40 9.40 37.51 4.57
748 760 2.025589 TTGACACCGTGTAAAGTGCA 57.974 45.000 3.58 0.00 37.51 4.57
749 761 3.619233 ATTTGACACCGTGTAAAGTGC 57.381 42.857 3.58 0.00 37.51 4.40
752 764 4.090930 CGACCTATTTGACACCGTGTAAAG 59.909 45.833 3.58 0.00 0.00 1.85
754 766 3.577667 CGACCTATTTGACACCGTGTAA 58.422 45.455 3.58 0.00 0.00 2.41
757 769 1.355971 CCGACCTATTTGACACCGTG 58.644 55.000 0.00 0.00 0.00 4.94
758 770 0.248289 CCCGACCTATTTGACACCGT 59.752 55.000 0.00 0.00 0.00 4.83
759 771 0.533491 TCCCGACCTATTTGACACCG 59.467 55.000 0.00 0.00 0.00 4.94
760 772 2.773993 TTCCCGACCTATTTGACACC 57.226 50.000 0.00 0.00 0.00 4.16
761 773 4.070009 AGTTTTCCCGACCTATTTGACAC 58.930 43.478 0.00 0.00 0.00 3.67
762 774 4.360951 AGTTTTCCCGACCTATTTGACA 57.639 40.909 0.00 0.00 0.00 3.58
763 775 4.142966 CGAAGTTTTCCCGACCTATTTGAC 60.143 45.833 0.00 0.00 0.00 3.18
764 776 3.998341 CGAAGTTTTCCCGACCTATTTGA 59.002 43.478 0.00 0.00 0.00 2.69
765 777 3.425758 GCGAAGTTTTCCCGACCTATTTG 60.426 47.826 0.00 0.00 0.00 2.32
766 778 2.745821 GCGAAGTTTTCCCGACCTATTT 59.254 45.455 0.00 0.00 0.00 1.40
767 779 2.353323 GCGAAGTTTTCCCGACCTATT 58.647 47.619 0.00 0.00 0.00 1.73
768 780 1.406477 GGCGAAGTTTTCCCGACCTAT 60.406 52.381 0.00 0.00 0.00 2.57
769 781 0.037046 GGCGAAGTTTTCCCGACCTA 60.037 55.000 0.00 0.00 0.00 3.08
770 782 1.302271 GGCGAAGTTTTCCCGACCT 60.302 57.895 0.00 0.00 0.00 3.85
771 783 2.674084 CGGCGAAGTTTTCCCGACC 61.674 63.158 0.00 0.00 42.38 4.79
772 784 1.957695 ACGGCGAAGTTTTCCCGAC 60.958 57.895 16.62 0.00 42.38 4.79
773 785 1.957186 CACGGCGAAGTTTTCCCGA 60.957 57.895 16.62 0.00 42.38 5.14
774 786 2.554272 CACGGCGAAGTTTTCCCG 59.446 61.111 16.62 13.47 44.07 5.14
777 789 1.120437 CTTTGCACGGCGAAGTTTTC 58.880 50.000 16.62 0.00 43.04 2.29
785 797 1.539776 GCTTTGTTCTTTGCACGGCG 61.540 55.000 4.80 4.80 0.00 6.46
787 799 1.199624 GTGCTTTGTTCTTTGCACGG 58.800 50.000 0.00 0.00 44.60 4.94
843 855 7.044181 TGAGCTTAAAATACTGATCAGAGGTG 58.956 38.462 29.27 3.31 0.00 4.00
951 965 3.876589 TTTGTGCGAGCCGAGGACC 62.877 63.158 0.00 0.00 0.00 4.46
952 966 1.696832 GATTTGTGCGAGCCGAGGAC 61.697 60.000 0.00 0.00 0.00 3.85
1002 1036 2.183046 GAGCGGAGAGGACAGTGC 59.817 66.667 0.00 0.00 0.00 4.40
1079 1120 1.290639 GCTTAGCTAGCTAGGCGGG 59.709 63.158 34.38 19.30 46.77 6.13
1110 1151 2.456119 CGCGCTTCTACTGGGCTTG 61.456 63.158 5.56 0.00 40.53 4.01
1116 1157 1.134530 CGTCCTTCGCGCTTCTACTG 61.135 60.000 5.56 0.00 0.00 2.74
1117 1162 1.136984 CGTCCTTCGCGCTTCTACT 59.863 57.895 5.56 0.00 0.00 2.57
1127 1172 0.806102 CATGGCTACACCGTCCTTCG 60.806 60.000 0.00 0.00 43.94 3.79
1805 1877 4.051167 TAGGAGGACCGTGCGGGA 62.051 66.667 15.44 0.00 41.83 5.14
1827 1899 4.388499 GTCGGTGGGGACGCACAT 62.388 66.667 19.09 0.00 44.70 3.21
1853 1925 0.536687 CGTATCCTCCTGCTCCGGTA 60.537 60.000 0.00 0.00 0.00 4.02
1982 2054 1.135333 GGCAGGTCTAGTGCTACTGTC 59.865 57.143 4.07 0.00 40.97 3.51
1986 2058 2.100087 GAGAAGGCAGGTCTAGTGCTAC 59.900 54.545 4.07 0.00 40.97 3.58
1988 2060 1.190643 GAGAAGGCAGGTCTAGTGCT 58.809 55.000 4.07 0.00 40.97 4.40
1996 2074 1.594310 GAAGCGAGAGAAGGCAGGT 59.406 57.895 0.00 0.00 0.00 4.00
2000 2078 1.153469 CTGGGAAGCGAGAGAAGGC 60.153 63.158 0.00 0.00 0.00 4.35
2001 2079 1.475403 TACTGGGAAGCGAGAGAAGG 58.525 55.000 0.00 0.00 0.00 3.46
2002 2080 2.494073 ACTTACTGGGAAGCGAGAGAAG 59.506 50.000 0.00 0.00 0.00 2.85
2003 2081 2.526432 ACTTACTGGGAAGCGAGAGAA 58.474 47.619 0.00 0.00 0.00 2.87
2004 2082 2.217510 ACTTACTGGGAAGCGAGAGA 57.782 50.000 0.00 0.00 0.00 3.10
2005 2083 4.098044 TGATTACTTACTGGGAAGCGAGAG 59.902 45.833 0.00 0.00 0.00 3.20
2006 2084 4.021229 TGATTACTTACTGGGAAGCGAGA 58.979 43.478 0.00 0.00 0.00 4.04
2007 2085 4.142138 ACTGATTACTTACTGGGAAGCGAG 60.142 45.833 0.00 0.00 0.00 5.03
2008 2086 3.767673 ACTGATTACTTACTGGGAAGCGA 59.232 43.478 0.00 0.00 0.00 4.93
2009 2087 3.865745 CACTGATTACTTACTGGGAAGCG 59.134 47.826 0.00 0.00 0.00 4.68
2010 2088 3.623510 GCACTGATTACTTACTGGGAAGC 59.376 47.826 0.00 0.00 0.00 3.86
2011 2089 5.091261 AGCACTGATTACTTACTGGGAAG 57.909 43.478 0.00 0.00 0.00 3.46
2012 2090 4.081087 GGAGCACTGATTACTTACTGGGAA 60.081 45.833 0.00 0.00 0.00 3.97
2013 2091 3.451178 GGAGCACTGATTACTTACTGGGA 59.549 47.826 0.00 0.00 0.00 4.37
2014 2092 3.197766 TGGAGCACTGATTACTTACTGGG 59.802 47.826 0.00 0.00 0.00 4.45
2015 2093 4.471904 TGGAGCACTGATTACTTACTGG 57.528 45.455 0.00 0.00 0.00 4.00
2041 2121 9.690913 TGCTAAATCTAGTTACTCCTAACTGTA 57.309 33.333 3.81 0.00 42.26 2.74
2077 2157 4.336433 CCAGCGAGATTACATTCACCAAAT 59.664 41.667 0.00 0.00 0.00 2.32
2080 2160 2.236146 ACCAGCGAGATTACATTCACCA 59.764 45.455 0.00 0.00 0.00 4.17
2101 2181 4.903045 ATTCCAACCCGAGAAGAAGTTA 57.097 40.909 0.00 0.00 0.00 2.24
2127 2207 1.212935 ACTGATTTCTTCCCCGGGATG 59.787 52.381 26.32 10.21 0.00 3.51
2144 2224 0.109342 ACACCAAAGAGCTGGGACTG 59.891 55.000 0.00 0.00 41.16 3.51
2147 2227 1.623811 GAGTACACCAAAGAGCTGGGA 59.376 52.381 0.00 0.00 41.16 4.37
2166 2246 6.053005 CCAAAGAAAGTAGTGGTTGTACAGA 58.947 40.000 0.00 0.00 0.00 3.41
2168 2248 5.587043 CACCAAAGAAAGTAGTGGTTGTACA 59.413 40.000 0.00 0.00 41.68 2.90
2169 2249 5.587443 ACACCAAAGAAAGTAGTGGTTGTAC 59.413 40.000 0.00 0.00 41.68 2.90
2170 2250 5.747342 ACACCAAAGAAAGTAGTGGTTGTA 58.253 37.500 0.00 0.00 41.68 2.41
2171 2251 4.595986 ACACCAAAGAAAGTAGTGGTTGT 58.404 39.130 0.00 0.00 41.68 3.32
2172 2252 5.820947 AGTACACCAAAGAAAGTAGTGGTTG 59.179 40.000 0.00 0.00 41.68 3.77
2173 2253 5.997843 AGTACACCAAAGAAAGTAGTGGTT 58.002 37.500 0.00 0.00 41.68 3.67
2176 2256 6.281405 ACAGAGTACACCAAAGAAAGTAGTG 58.719 40.000 0.00 0.00 34.61 2.74
2185 2265 9.088512 GATTACTGATTACAGAGTACACCAAAG 57.911 37.037 0.00 0.00 46.03 2.77
2194 2274 8.140112 ACAGGAAAGATTACTGATTACAGAGT 57.860 34.615 9.24 0.00 46.03 3.24
2196 2276 9.475620 TCTACAGGAAAGATTACTGATTACAGA 57.524 33.333 9.24 1.75 46.03 3.41
2205 2285 6.893005 AGCTACAGTCTACAGGAAAGATTACT 59.107 38.462 0.00 0.00 0.00 2.24
2207 2287 8.818622 TTAGCTACAGTCTACAGGAAAGATTA 57.181 34.615 0.00 0.00 0.00 1.75
2208 2288 7.719871 TTAGCTACAGTCTACAGGAAAGATT 57.280 36.000 0.00 0.00 0.00 2.40
2209 2289 7.014808 GGATTAGCTACAGTCTACAGGAAAGAT 59.985 40.741 0.00 0.00 0.00 2.40
2210 2290 6.321690 GGATTAGCTACAGTCTACAGGAAAGA 59.678 42.308 0.00 0.00 0.00 2.52
2211 2291 6.096987 TGGATTAGCTACAGTCTACAGGAAAG 59.903 42.308 0.00 0.00 0.00 2.62
2212 2292 5.955959 TGGATTAGCTACAGTCTACAGGAAA 59.044 40.000 0.00 0.00 0.00 3.13
2213 2293 5.516044 TGGATTAGCTACAGTCTACAGGAA 58.484 41.667 0.00 0.00 0.00 3.36
2276 2362 5.278061 TGTACTAGGAAGGCAAGAGGTATT 58.722 41.667 0.00 0.00 0.00 1.89
2279 2365 3.185880 TGTACTAGGAAGGCAAGAGGT 57.814 47.619 0.00 0.00 0.00 3.85
2286 2372 2.544069 GCAGTCGATGTACTAGGAAGGC 60.544 54.545 0.00 0.00 0.00 4.35
2301 2406 0.919981 GAAAGATCAGAGCGCAGTCG 59.080 55.000 11.47 0.00 39.07 4.18
2312 2417 3.005050 CCAGCTTTGCACAAGAAAGATCA 59.995 43.478 11.34 0.00 33.01 2.92
2424 2541 3.508840 GAATGCCCCGGCGAACTG 61.509 66.667 9.30 0.00 45.51 3.16
2438 2555 4.587684 GGATGAGGAGCCATTGAATTGAAT 59.412 41.667 0.00 0.00 0.00 2.57
2439 2556 3.956199 GGATGAGGAGCCATTGAATTGAA 59.044 43.478 0.00 0.00 0.00 2.69
2440 2557 3.559069 GGATGAGGAGCCATTGAATTGA 58.441 45.455 0.00 0.00 0.00 2.57
2441 2558 2.292569 CGGATGAGGAGCCATTGAATTG 59.707 50.000 0.00 0.00 0.00 2.32
2442 2559 2.579873 CGGATGAGGAGCCATTGAATT 58.420 47.619 0.00 0.00 0.00 2.17
2509 2626 4.403137 CCGTTGACGTACGCCGGA 62.403 66.667 23.49 2.38 41.08 5.14
2514 2631 3.688475 ATCGGCCCGTTGACGTACG 62.688 63.158 15.01 15.01 41.06 3.67
2516 2633 2.491152 GATCGGCCCGTTGACGTA 59.509 61.111 1.63 0.00 37.74 3.57
2583 2719 2.224606 GTGCATGCATACCATAGCAGT 58.775 47.619 25.64 0.00 44.94 4.40
2592 2728 1.011904 CGCTCGTGTGCATGCATAC 60.012 57.895 31.10 31.10 35.21 2.39
2613 2750 2.600867 GCATTTGCTCGAGTAGACAGAC 59.399 50.000 15.13 0.00 38.21 3.51
2614 2751 2.732282 CGCATTTGCTCGAGTAGACAGA 60.732 50.000 15.13 0.00 39.32 3.41
2615 2752 1.585668 CGCATTTGCTCGAGTAGACAG 59.414 52.381 15.13 2.79 39.32 3.51
2616 2753 1.629013 CGCATTTGCTCGAGTAGACA 58.371 50.000 15.13 0.00 39.32 3.41
2622 2759 3.147889 CTCGGCGCATTTGCTCGAG 62.148 63.158 21.40 21.40 46.61 4.04
2654 2791 1.082496 GCAAGCAGAGCACACGTTC 60.082 57.895 0.00 0.00 0.00 3.95
2655 2792 1.502163 GAGCAAGCAGAGCACACGTT 61.502 55.000 0.00 0.00 0.00 3.99
2656 2793 1.958205 GAGCAAGCAGAGCACACGT 60.958 57.895 0.00 0.00 0.00 4.49
2657 2794 2.675056 GGAGCAAGCAGAGCACACG 61.675 63.158 0.00 0.00 0.00 4.49
2658 2795 2.675056 CGGAGCAAGCAGAGCACAC 61.675 63.158 0.00 0.00 0.00 3.82
2659 2796 2.357881 CGGAGCAAGCAGAGCACA 60.358 61.111 0.00 0.00 0.00 4.57
2660 2797 2.358003 ACGGAGCAAGCAGAGCAC 60.358 61.111 0.00 0.00 0.00 4.40
2661 2798 2.047844 GACGGAGCAAGCAGAGCA 60.048 61.111 0.00 0.00 0.00 4.26
2662 2799 3.184683 CGACGGAGCAAGCAGAGC 61.185 66.667 0.00 0.00 0.00 4.09
2663 2800 1.803519 GACGACGGAGCAAGCAGAG 60.804 63.158 0.00 0.00 0.00 3.35
2664 2801 2.258591 GACGACGGAGCAAGCAGA 59.741 61.111 0.00 0.00 0.00 4.26
2665 2802 2.091112 CAGACGACGGAGCAAGCAG 61.091 63.158 0.00 0.00 0.00 4.24
2677 2814 1.095600 CTCCCACGAATCTCAGACGA 58.904 55.000 0.00 0.00 0.00 4.20
2678 2815 0.101399 CCTCCCACGAATCTCAGACG 59.899 60.000 0.00 0.00 0.00 4.18
2681 2818 1.407258 GTCTCCTCCCACGAATCTCAG 59.593 57.143 0.00 0.00 0.00 3.35
2683 2820 0.747852 GGTCTCCTCCCACGAATCTC 59.252 60.000 0.00 0.00 0.00 2.75
2690 2827 2.971452 GACACGGTCTCCTCCCAC 59.029 66.667 0.00 0.00 0.00 4.61
2782 2925 2.903547 GAGTGGCGCGAAAAAGGCA 61.904 57.895 12.10 0.00 40.70 4.75
2783 2926 2.126850 GAGTGGCGCGAAAAAGGC 60.127 61.111 12.10 0.00 0.00 4.35
2944 3111 2.598907 CGTGCTAAAATAATCCCGTGCG 60.599 50.000 0.00 0.00 0.00 5.34
2945 3112 2.286772 CCGTGCTAAAATAATCCCGTGC 60.287 50.000 0.00 0.00 0.00 5.34
2947 3114 1.944709 GCCGTGCTAAAATAATCCCGT 59.055 47.619 0.00 0.00 0.00 5.28
2949 3116 2.215196 TCGCCGTGCTAAAATAATCCC 58.785 47.619 0.00 0.00 0.00 3.85
2951 3118 2.349532 GGCTCGCCGTGCTAAAATAATC 60.350 50.000 11.18 0.00 0.00 1.75
2952 3119 1.602377 GGCTCGCCGTGCTAAAATAAT 59.398 47.619 11.18 0.00 0.00 1.28
2954 3121 2.685364 GGCTCGCCGTGCTAAAATA 58.315 52.632 11.18 0.00 0.00 1.40
2955 3122 3.497879 GGCTCGCCGTGCTAAAAT 58.502 55.556 11.18 0.00 0.00 1.82
3009 3180 3.952508 ATCACACCGTGGCTGGCA 61.953 61.111 0.00 0.00 33.87 4.92
3023 3194 7.147966 CCAGTACAACTGTAGTATACACCATCA 60.148 40.741 5.50 0.00 46.14 3.07
3033 3204 7.759886 CGTAGTAGTACCAGTACAACTGTAGTA 59.240 40.741 10.41 0.34 44.50 1.82
3034 3205 6.591834 CGTAGTAGTACCAGTACAACTGTAGT 59.408 42.308 10.41 0.00 44.50 2.73
3035 3206 6.591834 ACGTAGTAGTACCAGTACAACTGTAG 59.408 42.308 10.41 0.00 41.90 2.74
3036 3207 6.464222 ACGTAGTAGTACCAGTACAACTGTA 58.536 40.000 10.41 0.00 41.90 2.74
3055 3226 2.228343 GGCCAGGCAGTATAGTACGTAG 59.772 54.545 15.19 0.00 0.00 3.51
3056 3227 2.158564 AGGCCAGGCAGTATAGTACGTA 60.159 50.000 15.19 0.00 0.00 3.57
3057 3228 1.038280 GGCCAGGCAGTATAGTACGT 58.962 55.000 15.19 0.00 0.00 3.57
3058 3229 1.329256 AGGCCAGGCAGTATAGTACG 58.671 55.000 15.19 0.00 0.00 3.67
3059 3230 3.467803 CAAAGGCCAGGCAGTATAGTAC 58.532 50.000 15.19 0.00 0.00 2.73
3064 3246 1.750399 CGCAAAGGCCAGGCAGTAT 60.750 57.895 15.19 0.00 36.38 2.12
3123 3305 2.125961 GCGATCTCCCCGTACAGGT 61.126 63.158 0.00 0.00 38.74 4.00
3124 3306 2.728817 GCGATCTCCCCGTACAGG 59.271 66.667 0.00 0.00 40.63 4.00
3125 3307 2.331805 CGCGATCTCCCCGTACAG 59.668 66.667 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.