Multiple sequence alignment - TraesCS1D01G323600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G323600 chr1D 100.000 3399 0 0 1 3399 416147495 416150893 0.000000e+00 6277.0
1 TraesCS1D01G323600 chr1D 100.000 124 0 0 717 840 254456787 254456664 2.640000e-56 230.0
2 TraesCS1D01G323600 chr1D 100.000 124 0 0 717 840 254457092 254457215 2.640000e-56 230.0
3 TraesCS1D01G323600 chr6A 97.662 2566 49 6 836 3399 41599331 41601887 0.000000e+00 4396.0
4 TraesCS1D01G323600 chr6A 94.595 148 8 0 569 716 41599175 41599322 2.640000e-56 230.0
5 TraesCS1D01G323600 chr6A 87.755 98 8 1 441 534 82668074 82668171 9.970000e-21 111.0
6 TraesCS1D01G323600 chr7A 97.584 2566 51 6 836 3399 108110978 108108422 0.000000e+00 4385.0
7 TraesCS1D01G323600 chr7A 94.301 193 11 0 1 193 299403353 299403545 2.560000e-76 296.0
8 TraesCS1D01G323600 chr7A 90.698 129 8 3 284 411 648679332 648679457 5.830000e-38 169.0
9 TraesCS1D01G323600 chr7A 90.000 130 5 6 288 411 95935060 95934933 9.760000e-36 161.0
10 TraesCS1D01G323600 chr5A 97.117 2567 40 13 836 3399 560601912 560599377 0.000000e+00 4300.0
11 TraesCS1D01G323600 chr5A 94.819 193 10 0 1 193 543934755 543934563 5.510000e-78 302.0
12 TraesCS1D01G323600 chr5A 91.758 182 9 6 537 716 560602098 560601921 7.280000e-62 248.0
13 TraesCS1D01G323600 chr3B 97.024 2554 67 6 848 3399 221136249 221133703 0.000000e+00 4287.0
14 TraesCS1D01G323600 chr3B 94.360 2571 121 13 838 3399 277023142 277025697 0.000000e+00 3923.0
15 TraesCS1D01G323600 chr3B 93.232 1906 98 11 838 2725 277019050 277020942 0.000000e+00 2776.0
16 TraesCS1D01G323600 chr3B 92.169 166 10 3 552 716 817347319 817347156 7.340000e-57 231.0
17 TraesCS1D01G323600 chr3B 93.333 150 10 0 567 716 277022982 277023131 4.410000e-54 222.0
18 TraesCS1D01G323600 chr3B 91.772 158 11 1 559 716 277018884 277019039 5.710000e-53 219.0
19 TraesCS1D01G323600 chr3B 92.667 150 11 0 567 716 277020938 277021087 2.050000e-52 217.0
20 TraesCS1D01G323600 chr3B 92.000 75 6 0 441 515 761715580 761715654 4.640000e-19 106.0
21 TraesCS1D01G323600 chr2A 95.483 2590 76 11 836 3399 721617547 721614973 0.000000e+00 4096.0
22 TraesCS1D01G323600 chr2A 95.364 151 7 0 566 716 721617706 721617556 1.220000e-59 241.0
23 TraesCS1D01G323600 chr2A 89.655 116 2 6 306 411 177949835 177949720 4.570000e-29 139.0
24 TraesCS1D01G323600 chr2A 97.260 73 2 0 339 411 46354123 46354195 1.280000e-24 124.0
25 TraesCS1D01G323600 chr2B 94.390 2567 124 12 838 3399 75905050 75907601 0.000000e+00 3925.0
26 TraesCS1D01G323600 chr2B 94.068 236 12 2 1 234 611317979 611317744 1.160000e-94 357.0
27 TraesCS1D01G323600 chr1B 94.415 2256 109 11 1155 3399 123482818 123485067 0.000000e+00 3452.0
28 TraesCS1D01G323600 chr1B 90.154 325 28 1 836 1160 123472438 123472758 1.460000e-113 420.0
29 TraesCS1D01G323600 chr1B 90.751 173 10 4 544 716 123472263 123472429 3.410000e-55 226.0
30 TraesCS1D01G323600 chr3A 95.061 1721 54 11 836 2538 690719455 690721162 0.000000e+00 2678.0
31 TraesCS1D01G323600 chr3A 96.599 794 24 2 2607 3399 690721443 690722234 0.000000e+00 1314.0
32 TraesCS1D01G323600 chr3A 95.337 193 9 0 1 193 6695576 6695384 1.180000e-79 307.0
33 TraesCS1D01G323600 chr3A 94.301 193 11 0 1 193 6751158 6750966 2.560000e-76 296.0
34 TraesCS1D01G323600 chr3A 93.711 159 6 3 559 716 690719291 690719446 5.670000e-58 235.0
35 TraesCS1D01G323600 chr3A 92.000 75 6 0 441 515 705743882 705743808 4.640000e-19 106.0
36 TraesCS1D01G323600 chrUn 94.550 422 15 2 988 1401 476699315 476699736 0.000000e+00 645.0
37 TraesCS1D01G323600 chrUn 100.000 124 0 0 717 840 385510086 385509963 2.640000e-56 230.0
38 TraesCS1D01G323600 chrUn 100.000 124 0 0 717 840 388894767 388894890 2.640000e-56 230.0
39 TraesCS1D01G323600 chrUn 100.000 124 0 0 717 840 433905657 433905780 2.640000e-56 230.0
40 TraesCS1D01G323600 chrUn 100.000 124 0 0 717 840 453035385 453035262 2.640000e-56 230.0
41 TraesCS1D01G323600 chr6D 96.382 304 10 1 1 303 354682727 354682424 1.820000e-137 499.0
42 TraesCS1D01G323600 chr6D 89.011 364 28 6 1 363 337768006 337767654 1.120000e-119 440.0
43 TraesCS1D01G323600 chr2D 92.883 281 14 6 86 364 567577515 567577791 1.470000e-108 403.0
44 TraesCS1D01G323600 chr1A 94.301 193 11 0 1 193 223819946 223819754 2.560000e-76 296.0
45 TraesCS1D01G323600 chr1A 100.000 124 0 0 717 840 554479913 554480036 2.640000e-56 230.0
46 TraesCS1D01G323600 chr1A 85.714 98 9 3 441 534 84140976 84141072 7.760000e-17 99.0
47 TraesCS1D01G323600 chr4D 100.000 124 0 0 717 840 19888121 19888244 2.640000e-56 230.0
48 TraesCS1D01G323600 chr4B 100.000 124 0 0 717 840 507429540 507429417 2.640000e-56 230.0
49 TraesCS1D01G323600 chr4B 90.909 77 5 1 441 515 88286589 88286513 6.000000e-18 102.0
50 TraesCS1D01G323600 chr5D 97.600 125 2 1 288 411 421910894 421910770 2.660000e-51 213.0
51 TraesCS1D01G323600 chr3D 92.800 125 6 2 288 411 141497242 141497120 9.690000e-41 178.0
52 TraesCS1D01G323600 chr4A 91.200 125 7 3 288 411 374640001 374639880 2.100000e-37 167.0
53 TraesCS1D01G323600 chr4A 86.429 140 14 4 274 411 716518958 716519094 7.600000e-32 148.0
54 TraesCS1D01G323600 chr4A 87.402 127 9 4 289 411 26680489 26680366 4.570000e-29 139.0
55 TraesCS1D01G323600 chr4A 83.178 107 10 4 441 540 656079334 656079229 1.300000e-14 91.6
56 TraesCS1D01G323600 chr7B 92.208 77 4 1 441 515 722402368 722402444 1.290000e-19 108.0
57 TraesCS1D01G323600 chr7B 80.576 139 14 10 441 569 646173455 646173320 1.000000e-15 95.3
58 TraesCS1D01G323600 chr6B 83.495 103 13 2 441 539 161200469 161200571 3.610000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G323600 chr1D 416147495 416150893 3398 False 6277.0 6277 100.000000 1 3399 1 chr1D.!!$F2 3398
1 TraesCS1D01G323600 chr6A 41599175 41601887 2712 False 2313.0 4396 96.128500 569 3399 2 chr6A.!!$F2 2830
2 TraesCS1D01G323600 chr7A 108108422 108110978 2556 True 4385.0 4385 97.584000 836 3399 1 chr7A.!!$R2 2563
3 TraesCS1D01G323600 chr5A 560599377 560602098 2721 True 2274.0 4300 94.437500 537 3399 2 chr5A.!!$R2 2862
4 TraesCS1D01G323600 chr3B 221133703 221136249 2546 True 4287.0 4287 97.024000 848 3399 1 chr3B.!!$R1 2551
5 TraesCS1D01G323600 chr3B 277018884 277025697 6813 False 1471.4 3923 93.072800 559 3399 5 chr3B.!!$F2 2840
6 TraesCS1D01G323600 chr2A 721614973 721617706 2733 True 2168.5 4096 95.423500 566 3399 2 chr2A.!!$R2 2833
7 TraesCS1D01G323600 chr2B 75905050 75907601 2551 False 3925.0 3925 94.390000 838 3399 1 chr2B.!!$F1 2561
8 TraesCS1D01G323600 chr1B 123482818 123485067 2249 False 3452.0 3452 94.415000 1155 3399 1 chr1B.!!$F1 2244
9 TraesCS1D01G323600 chr3A 690719291 690722234 2943 False 1409.0 2678 95.123667 559 3399 3 chr3A.!!$F1 2840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 315 0.165944 CCGACAAAGTCAATCCGTGC 59.834 55.0 0.00 0.00 32.09 5.34 F
516 517 0.178068 ATCTGGTGGGACCGAATTCG 59.822 55.0 20.92 20.92 42.58 3.34 F
2157 6279 1.271856 TGATTTCCTCGTGCCACCTA 58.728 50.0 0.00 0.00 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 6279 3.790091 CCTGCGCTGCACATATAGATAT 58.210 45.455 9.73 0.0 33.79 1.63 R
2306 6431 5.645067 TGTAGCTCTCATCCAACTTGAAATG 59.355 40.000 0.00 0.0 0.00 2.32 R
3169 7507 2.145536 CATGCGCATGCCAGACTTATA 58.854 47.619 35.08 0.0 41.78 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.443266 ACTCGGCGCTGCTCTTCC 62.443 66.667 12.58 0.00 0.00 3.46
18 19 4.140599 CTCGGCGCTGCTCTTCCT 62.141 66.667 12.58 0.00 0.00 3.36
19 20 4.135153 TCGGCGCTGCTCTTCCTC 62.135 66.667 12.58 0.00 0.00 3.71
21 22 4.135153 GGCGCTGCTCTTCCTCGA 62.135 66.667 7.64 0.00 0.00 4.04
22 23 2.105930 GCGCTGCTCTTCCTCGAT 59.894 61.111 0.00 0.00 0.00 3.59
23 24 2.236382 GCGCTGCTCTTCCTCGATG 61.236 63.158 0.00 0.00 0.00 3.84
24 25 2.236382 CGCTGCTCTTCCTCGATGC 61.236 63.158 0.00 0.00 0.00 3.91
25 26 2.236382 GCTGCTCTTCCTCGATGCG 61.236 63.158 0.00 0.00 0.00 4.73
26 27 1.435105 CTGCTCTTCCTCGATGCGA 59.565 57.895 0.00 0.00 0.00 5.10
36 37 1.282875 TCGATGCGAGGTATCAGCG 59.717 57.895 0.00 0.00 42.61 5.18
37 38 1.008424 CGATGCGAGGTATCAGCGT 60.008 57.895 0.00 0.00 37.33 5.07
38 39 0.999228 CGATGCGAGGTATCAGCGTC 60.999 60.000 5.82 5.82 41.88 5.19
39 40 0.312416 GATGCGAGGTATCAGCGTCT 59.688 55.000 8.02 0.00 42.00 4.18
40 41 0.312416 ATGCGAGGTATCAGCGTCTC 59.688 55.000 0.00 0.00 0.00 3.36
41 42 4.903730 CGAGGTATCAGCGTCTCG 57.096 61.111 0.00 0.00 42.09 4.04
57 58 3.802862 TCGCCTAGGTGTAGGAGAG 57.197 57.895 21.61 0.00 46.94 3.20
58 59 0.465824 TCGCCTAGGTGTAGGAGAGC 60.466 60.000 21.61 0.00 46.94 4.09
59 60 3.141860 TCGCCTAGGTGTAGGAGAGCA 62.142 57.143 21.61 0.00 46.94 4.26
62 63 1.752683 CTAGGTGTAGGAGAGCACGT 58.247 55.000 0.00 0.00 36.54 4.49
63 64 1.402259 CTAGGTGTAGGAGAGCACGTG 59.598 57.143 12.28 12.28 36.54 4.49
64 65 0.251209 AGGTGTAGGAGAGCACGTGA 60.251 55.000 22.23 0.00 36.54 4.35
65 66 0.818296 GGTGTAGGAGAGCACGTGAT 59.182 55.000 22.23 14.87 36.54 3.06
66 67 1.202313 GGTGTAGGAGAGCACGTGATC 60.202 57.143 25.68 25.68 36.54 2.92
67 68 1.103803 TGTAGGAGAGCACGTGATCC 58.896 55.000 28.78 24.32 0.00 3.36
68 69 0.386113 GTAGGAGAGCACGTGATCCC 59.614 60.000 28.78 26.51 31.86 3.85
69 70 1.101635 TAGGAGAGCACGTGATCCCG 61.102 60.000 28.78 0.00 31.86 5.14
70 71 2.105128 GAGAGCACGTGATCCCGG 59.895 66.667 28.78 0.00 0.00 5.73
71 72 3.432051 GAGAGCACGTGATCCCGGG 62.432 68.421 28.78 16.85 0.00 5.73
75 76 2.588877 CACGTGATCCCGGGCATC 60.589 66.667 18.49 19.54 0.00 3.91
76 77 4.221422 ACGTGATCCCGGGCATCG 62.221 66.667 18.49 19.26 38.88 3.84
77 78 4.221422 CGTGATCCCGGGCATCGT 62.221 66.667 18.49 0.00 37.11 3.73
78 79 2.852180 CGTGATCCCGGGCATCGTA 61.852 63.158 18.49 0.00 37.11 3.43
79 80 1.671742 GTGATCCCGGGCATCGTAT 59.328 57.895 18.49 1.67 37.11 3.06
80 81 0.892755 GTGATCCCGGGCATCGTATA 59.107 55.000 18.49 0.00 37.11 1.47
81 82 1.480954 GTGATCCCGGGCATCGTATAT 59.519 52.381 18.49 0.00 37.11 0.86
82 83 2.691526 GTGATCCCGGGCATCGTATATA 59.308 50.000 18.49 0.00 37.11 0.86
83 84 3.321111 GTGATCCCGGGCATCGTATATAT 59.679 47.826 18.49 0.00 37.11 0.86
84 85 3.320826 TGATCCCGGGCATCGTATATATG 59.679 47.826 18.49 0.00 37.11 1.78
85 86 2.036387 TCCCGGGCATCGTATATATGG 58.964 52.381 18.49 0.00 37.11 2.74
86 87 1.070134 CCCGGGCATCGTATATATGGG 59.930 57.143 8.08 0.00 37.11 4.00
87 88 2.036387 CCGGGCATCGTATATATGGGA 58.964 52.381 0.00 0.00 37.11 4.37
88 89 2.035961 CCGGGCATCGTATATATGGGAG 59.964 54.545 0.00 0.00 37.11 4.30
89 90 2.035961 CGGGCATCGTATATATGGGAGG 59.964 54.545 2.10 0.00 0.00 4.30
90 91 2.368875 GGGCATCGTATATATGGGAGGG 59.631 54.545 2.10 0.00 0.00 4.30
91 92 3.039011 GGCATCGTATATATGGGAGGGT 58.961 50.000 2.10 0.00 0.00 4.34
92 93 3.454812 GGCATCGTATATATGGGAGGGTT 59.545 47.826 2.10 0.00 0.00 4.11
93 94 4.652421 GGCATCGTATATATGGGAGGGTTA 59.348 45.833 2.10 0.00 0.00 2.85
94 95 5.221461 GGCATCGTATATATGGGAGGGTTAG 60.221 48.000 2.10 0.00 0.00 2.34
95 96 5.221461 GCATCGTATATATGGGAGGGTTAGG 60.221 48.000 2.10 0.00 0.00 2.69
96 97 5.801720 TCGTATATATGGGAGGGTTAGGA 57.198 43.478 2.10 0.00 0.00 2.94
97 98 6.156554 TCGTATATATGGGAGGGTTAGGAA 57.843 41.667 2.10 0.00 0.00 3.36
98 99 6.192773 TCGTATATATGGGAGGGTTAGGAAG 58.807 44.000 2.10 0.00 0.00 3.46
99 100 5.363005 CGTATATATGGGAGGGTTAGGAAGG 59.637 48.000 0.00 0.00 0.00 3.46
100 101 3.745678 ATATGGGAGGGTTAGGAAGGT 57.254 47.619 0.00 0.00 0.00 3.50
101 102 2.378308 ATGGGAGGGTTAGGAAGGTT 57.622 50.000 0.00 0.00 0.00 3.50
102 103 1.665137 TGGGAGGGTTAGGAAGGTTC 58.335 55.000 0.00 0.00 0.00 3.62
103 104 0.540454 GGGAGGGTTAGGAAGGTTCG 59.460 60.000 0.00 0.00 0.00 3.95
104 105 1.565067 GGAGGGTTAGGAAGGTTCGA 58.435 55.000 0.00 0.00 0.00 3.71
105 106 1.206610 GGAGGGTTAGGAAGGTTCGAC 59.793 57.143 0.00 0.00 0.00 4.20
106 107 2.177734 GAGGGTTAGGAAGGTTCGACT 58.822 52.381 0.00 0.00 0.00 4.18
107 108 1.900486 AGGGTTAGGAAGGTTCGACTG 59.100 52.381 0.00 0.00 0.00 3.51
108 109 1.897802 GGGTTAGGAAGGTTCGACTGA 59.102 52.381 0.00 0.00 0.00 3.41
109 110 2.301009 GGGTTAGGAAGGTTCGACTGAA 59.699 50.000 0.00 0.00 0.00 3.02
110 111 3.244318 GGGTTAGGAAGGTTCGACTGAAA 60.244 47.826 0.00 0.00 35.46 2.69
111 112 3.995048 GGTTAGGAAGGTTCGACTGAAAG 59.005 47.826 0.00 0.00 42.29 2.62
125 126 3.692257 CTGAAAGTCCTGATGGTGAGT 57.308 47.619 0.00 0.00 34.23 3.41
126 127 4.013267 CTGAAAGTCCTGATGGTGAGTT 57.987 45.455 0.00 0.00 34.23 3.01
127 128 4.392940 CTGAAAGTCCTGATGGTGAGTTT 58.607 43.478 0.00 0.00 36.96 2.66
128 129 4.389374 TGAAAGTCCTGATGGTGAGTTTC 58.611 43.478 11.13 11.13 45.08 2.78
129 130 4.103153 TGAAAGTCCTGATGGTGAGTTTCT 59.897 41.667 16.38 0.00 45.09 2.52
130 131 4.713792 AAGTCCTGATGGTGAGTTTCTT 57.286 40.909 0.00 0.00 34.23 2.52
131 132 4.713792 AGTCCTGATGGTGAGTTTCTTT 57.286 40.909 0.00 0.00 34.23 2.52
132 133 4.392940 AGTCCTGATGGTGAGTTTCTTTG 58.607 43.478 0.00 0.00 34.23 2.77
133 134 4.137543 GTCCTGATGGTGAGTTTCTTTGT 58.862 43.478 0.00 0.00 34.23 2.83
134 135 4.580580 GTCCTGATGGTGAGTTTCTTTGTT 59.419 41.667 0.00 0.00 34.23 2.83
135 136 5.067805 GTCCTGATGGTGAGTTTCTTTGTTT 59.932 40.000 0.00 0.00 34.23 2.83
136 137 5.656416 TCCTGATGGTGAGTTTCTTTGTTTT 59.344 36.000 0.00 0.00 34.23 2.43
137 138 5.979517 CCTGATGGTGAGTTTCTTTGTTTTC 59.020 40.000 0.00 0.00 0.00 2.29
138 139 6.183360 CCTGATGGTGAGTTTCTTTGTTTTCT 60.183 38.462 0.00 0.00 0.00 2.52
139 140 7.169158 TGATGGTGAGTTTCTTTGTTTTCTT 57.831 32.000 0.00 0.00 0.00 2.52
140 141 8.287439 TGATGGTGAGTTTCTTTGTTTTCTTA 57.713 30.769 0.00 0.00 0.00 2.10
141 142 8.912988 TGATGGTGAGTTTCTTTGTTTTCTTAT 58.087 29.630 0.00 0.00 0.00 1.73
142 143 9.750125 GATGGTGAGTTTCTTTGTTTTCTTATT 57.250 29.630 0.00 0.00 0.00 1.40
144 145 9.364989 TGGTGAGTTTCTTTGTTTTCTTATTTG 57.635 29.630 0.00 0.00 0.00 2.32
145 146 9.581099 GGTGAGTTTCTTTGTTTTCTTATTTGA 57.419 29.630 0.00 0.00 0.00 2.69
172 173 8.874744 TGGTTTTCTAGTAGTAGTACATGACT 57.125 34.615 10.33 5.55 42.69 3.41
173 174 9.305555 TGGTTTTCTAGTAGTAGTACATGACTT 57.694 33.333 10.33 0.00 39.81 3.01
178 179 9.511272 TTCTAGTAGTAGTACATGACTTTGACA 57.489 33.333 10.33 0.00 39.81 3.58
179 180 9.682465 TCTAGTAGTAGTACATGACTTTGACAT 57.318 33.333 10.33 0.00 39.81 3.06
180 181 9.723447 CTAGTAGTAGTACATGACTTTGACATG 57.277 37.037 10.33 0.00 46.96 3.21
181 182 8.349568 AGTAGTAGTACATGACTTTGACATGA 57.650 34.615 14.57 0.00 45.22 3.07
182 183 8.244802 AGTAGTAGTACATGACTTTGACATGAC 58.755 37.037 14.57 0.00 45.22 3.06
183 184 6.993079 AGTAGTACATGACTTTGACATGACA 58.007 36.000 14.57 0.00 45.22 3.58
184 185 6.868864 AGTAGTACATGACTTTGACATGACAC 59.131 38.462 14.57 11.58 45.22 3.67
185 186 4.686091 AGTACATGACTTTGACATGACACG 59.314 41.667 14.57 0.00 45.22 4.49
186 187 3.466836 ACATGACTTTGACATGACACGT 58.533 40.909 14.57 0.00 45.22 4.49
187 188 4.627058 ACATGACTTTGACATGACACGTA 58.373 39.130 14.57 0.00 45.22 3.57
188 189 4.447724 ACATGACTTTGACATGACACGTAC 59.552 41.667 14.57 0.00 45.22 3.67
189 190 3.047093 TGACTTTGACATGACACGTACG 58.953 45.455 15.01 15.01 0.00 3.67
190 191 3.047796 GACTTTGACATGACACGTACGT 58.952 45.455 16.72 16.72 0.00 3.57
191 192 3.450578 ACTTTGACATGACACGTACGTT 58.549 40.909 20.23 10.48 0.00 3.99
192 193 3.866910 ACTTTGACATGACACGTACGTTT 59.133 39.130 20.23 13.51 0.00 3.60
193 194 3.845231 TTGACATGACACGTACGTTTG 57.155 42.857 20.23 15.68 0.00 2.93
194 195 2.811855 TGACATGACACGTACGTTTGT 58.188 42.857 20.23 18.66 0.00 2.83
195 196 3.962423 TGACATGACACGTACGTTTGTA 58.038 40.909 20.23 6.02 0.00 2.41
196 197 3.730215 TGACATGACACGTACGTTTGTAC 59.270 43.478 20.23 13.12 46.09 2.90
233 234 4.188702 CGTTTTGGCGGACGGATA 57.811 55.556 0.00 0.00 35.74 2.59
234 235 2.003672 CGTTTTGGCGGACGGATAG 58.996 57.895 0.00 0.00 35.74 2.08
235 236 0.458889 CGTTTTGGCGGACGGATAGA 60.459 55.000 0.00 0.00 35.74 1.98
236 237 1.004595 GTTTTGGCGGACGGATAGAC 58.995 55.000 0.00 0.00 0.00 2.59
237 238 0.458889 TTTTGGCGGACGGATAGACG 60.459 55.000 0.00 0.00 40.31 4.18
238 239 1.314534 TTTGGCGGACGGATAGACGA 61.315 55.000 0.00 0.00 37.61 4.20
239 240 1.314534 TTGGCGGACGGATAGACGAA 61.315 55.000 0.00 0.00 37.61 3.85
240 241 1.298938 GGCGGACGGATAGACGAAC 60.299 63.158 0.00 0.00 37.61 3.95
241 242 1.653533 GCGGACGGATAGACGAACG 60.654 63.158 0.00 0.00 38.63 3.95
242 243 1.717937 CGGACGGATAGACGAACGT 59.282 57.895 0.00 0.00 42.88 3.99
243 244 0.930310 CGGACGGATAGACGAACGTA 59.070 55.000 0.00 0.00 39.95 3.57
244 245 1.327460 CGGACGGATAGACGAACGTAA 59.673 52.381 0.00 0.00 39.95 3.18
245 246 2.709636 GGACGGATAGACGAACGTAAC 58.290 52.381 0.00 0.00 39.95 2.50
246 247 2.095853 GGACGGATAGACGAACGTAACA 59.904 50.000 0.00 0.00 39.95 2.41
247 248 3.242870 GGACGGATAGACGAACGTAACAT 60.243 47.826 0.00 0.00 39.95 2.71
248 249 3.945179 ACGGATAGACGAACGTAACATC 58.055 45.455 0.00 3.81 37.85 3.06
249 250 3.624861 ACGGATAGACGAACGTAACATCT 59.375 43.478 0.00 0.00 37.85 2.90
250 251 4.095483 ACGGATAGACGAACGTAACATCTT 59.905 41.667 0.00 0.00 37.85 2.40
251 252 5.032863 CGGATAGACGAACGTAACATCTTT 58.967 41.667 0.00 0.00 35.47 2.52
252 253 5.514204 CGGATAGACGAACGTAACATCTTTT 59.486 40.000 0.00 0.00 35.47 2.27
253 254 6.505888 CGGATAGACGAACGTAACATCTTTTG 60.506 42.308 0.00 0.00 35.47 2.44
254 255 4.385244 AGACGAACGTAACATCTTTTGC 57.615 40.909 0.00 0.00 0.00 3.68
255 256 4.056050 AGACGAACGTAACATCTTTTGCT 58.944 39.130 0.00 0.00 0.00 3.91
256 257 4.510340 AGACGAACGTAACATCTTTTGCTT 59.490 37.500 0.00 0.00 0.00 3.91
257 258 5.693104 AGACGAACGTAACATCTTTTGCTTA 59.307 36.000 0.00 0.00 0.00 3.09
258 259 5.912528 ACGAACGTAACATCTTTTGCTTAG 58.087 37.500 0.00 0.00 0.00 2.18
259 260 5.464389 ACGAACGTAACATCTTTTGCTTAGT 59.536 36.000 0.00 0.00 0.00 2.24
260 261 6.007677 CGAACGTAACATCTTTTGCTTAGTC 58.992 40.000 0.00 0.00 0.00 2.59
261 262 6.346279 CGAACGTAACATCTTTTGCTTAGTCA 60.346 38.462 0.00 0.00 0.00 3.41
262 263 6.854496 ACGTAACATCTTTTGCTTAGTCAA 57.146 33.333 0.00 0.00 0.00 3.18
263 264 7.254227 ACGTAACATCTTTTGCTTAGTCAAA 57.746 32.000 0.00 0.00 34.47 2.69
264 265 7.352739 ACGTAACATCTTTTGCTTAGTCAAAG 58.647 34.615 0.00 1.91 37.27 2.77
295 296 4.965119 AAAAAGTAGATGGCGGTGAATC 57.035 40.909 0.00 0.00 0.00 2.52
296 297 2.622064 AAGTAGATGGCGGTGAATCC 57.378 50.000 0.00 0.00 0.00 3.01
309 310 4.342352 GGTGAATCCGACAAAGTCAATC 57.658 45.455 0.00 0.00 32.09 2.67
310 311 3.127030 GGTGAATCCGACAAAGTCAATCC 59.873 47.826 0.00 0.00 32.09 3.01
311 312 3.000041 TGAATCCGACAAAGTCAATCCG 59.000 45.455 0.00 0.00 32.09 4.18
312 313 2.762535 ATCCGACAAAGTCAATCCGT 57.237 45.000 0.00 0.00 32.09 4.69
313 314 1.790755 TCCGACAAAGTCAATCCGTG 58.209 50.000 0.00 0.00 32.09 4.94
314 315 0.165944 CCGACAAAGTCAATCCGTGC 59.834 55.000 0.00 0.00 32.09 5.34
315 316 1.148310 CGACAAAGTCAATCCGTGCT 58.852 50.000 0.00 0.00 32.09 4.40
316 317 1.531149 CGACAAAGTCAATCCGTGCTT 59.469 47.619 0.00 0.00 32.09 3.91
317 318 2.032030 CGACAAAGTCAATCCGTGCTTT 60.032 45.455 0.00 0.00 35.37 3.51
318 319 3.185594 CGACAAAGTCAATCCGTGCTTTA 59.814 43.478 0.00 0.00 34.13 1.85
319 320 4.142902 CGACAAAGTCAATCCGTGCTTTAT 60.143 41.667 0.00 0.00 34.13 1.40
320 321 5.616866 CGACAAAGTCAATCCGTGCTTTATT 60.617 40.000 0.00 0.00 34.13 1.40
321 322 6.401688 CGACAAAGTCAATCCGTGCTTTATTA 60.402 38.462 0.00 0.00 34.13 0.98
322 323 7.391148 ACAAAGTCAATCCGTGCTTTATTAT 57.609 32.000 0.00 0.00 34.13 1.28
323 324 7.826690 ACAAAGTCAATCCGTGCTTTATTATT 58.173 30.769 0.00 0.00 34.13 1.40
324 325 8.952278 ACAAAGTCAATCCGTGCTTTATTATTA 58.048 29.630 0.00 0.00 34.13 0.98
325 326 9.438291 CAAAGTCAATCCGTGCTTTATTATTAG 57.562 33.333 0.00 0.00 34.13 1.73
326 327 7.730364 AGTCAATCCGTGCTTTATTATTAGG 57.270 36.000 0.00 0.00 0.00 2.69
327 328 6.710744 AGTCAATCCGTGCTTTATTATTAGGG 59.289 38.462 0.00 0.00 0.00 3.53
328 329 6.708949 GTCAATCCGTGCTTTATTATTAGGGA 59.291 38.462 0.00 0.00 0.00 4.20
329 330 7.227910 GTCAATCCGTGCTTTATTATTAGGGAA 59.772 37.037 0.00 0.00 0.00 3.97
330 331 7.776030 TCAATCCGTGCTTTATTATTAGGGAAA 59.224 33.333 0.00 0.00 0.00 3.13
331 332 7.745620 ATCCGTGCTTTATTATTAGGGAAAG 57.254 36.000 0.00 0.00 33.05 2.62
332 333 6.891388 TCCGTGCTTTATTATTAGGGAAAGA 58.109 36.000 0.00 0.00 31.83 2.52
333 334 7.514721 TCCGTGCTTTATTATTAGGGAAAGAT 58.485 34.615 0.00 0.00 31.83 2.40
334 335 8.653191 TCCGTGCTTTATTATTAGGGAAAGATA 58.347 33.333 0.00 0.00 31.83 1.98
335 336 8.936864 CCGTGCTTTATTATTAGGGAAAGATAG 58.063 37.037 0.00 0.00 31.83 2.08
336 337 8.443937 CGTGCTTTATTATTAGGGAAAGATAGC 58.556 37.037 0.00 0.00 31.83 2.97
337 338 9.284968 GTGCTTTATTATTAGGGAAAGATAGCA 57.715 33.333 0.00 0.00 31.83 3.49
338 339 9.284968 TGCTTTATTATTAGGGAAAGATAGCAC 57.715 33.333 0.00 0.00 31.83 4.40
339 340 9.284968 GCTTTATTATTAGGGAAAGATAGCACA 57.715 33.333 0.00 0.00 31.83 4.57
345 346 9.725019 TTATTAGGGAAAGATAGCACACATATG 57.275 33.333 0.00 0.00 0.00 1.78
346 347 4.392940 AGGGAAAGATAGCACACATATGC 58.607 43.478 1.58 0.00 46.50 3.14
352 353 2.408835 GCACACATATGCCCGTGC 59.591 61.111 22.21 22.21 46.85 5.34
353 354 2.708865 CACACATATGCCCGTGCG 59.291 61.111 1.58 0.00 41.78 5.34
354 355 2.106074 CACACATATGCCCGTGCGT 61.106 57.895 1.58 0.00 41.78 5.24
355 356 1.376683 ACACATATGCCCGTGCGTT 60.377 52.632 1.58 0.00 41.78 4.84
356 357 1.062365 CACATATGCCCGTGCGTTG 59.938 57.895 1.58 0.00 41.78 4.10
357 358 2.024588 CATATGCCCGTGCGTTGC 59.975 61.111 0.00 0.00 41.78 4.17
358 359 2.437537 ATATGCCCGTGCGTTGCA 60.438 55.556 8.11 8.11 41.78 4.08
359 360 2.043405 ATATGCCCGTGCGTTGCAA 61.043 52.632 0.00 0.00 41.47 4.08
360 361 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
374 375 4.976224 GTTGCAACGGGGTAATAAAGAT 57.024 40.909 14.90 0.00 0.00 2.40
375 376 5.319140 GTTGCAACGGGGTAATAAAGATT 57.681 39.130 14.90 0.00 0.00 2.40
376 377 4.974368 TGCAACGGGGTAATAAAGATTG 57.026 40.909 0.00 0.00 0.00 2.67
377 378 4.590918 TGCAACGGGGTAATAAAGATTGA 58.409 39.130 0.00 0.00 0.00 2.57
378 379 4.396790 TGCAACGGGGTAATAAAGATTGAC 59.603 41.667 0.00 0.00 0.00 3.18
379 380 4.396790 GCAACGGGGTAATAAAGATTGACA 59.603 41.667 0.00 0.00 0.00 3.58
380 381 5.067283 GCAACGGGGTAATAAAGATTGACAT 59.933 40.000 0.00 0.00 0.00 3.06
381 382 6.405397 GCAACGGGGTAATAAAGATTGACATT 60.405 38.462 0.00 0.00 0.00 2.71
382 383 7.201750 GCAACGGGGTAATAAAGATTGACATTA 60.202 37.037 0.00 0.00 0.00 1.90
383 384 8.846211 CAACGGGGTAATAAAGATTGACATTAT 58.154 33.333 0.00 0.00 0.00 1.28
384 385 8.990163 ACGGGGTAATAAAGATTGACATTATT 57.010 30.769 0.00 0.00 36.66 1.40
385 386 9.063615 ACGGGGTAATAAAGATTGACATTATTC 57.936 33.333 0.00 0.00 35.17 1.75
386 387 9.284968 CGGGGTAATAAAGATTGACATTATTCT 57.715 33.333 0.00 0.00 35.17 2.40
393 394 9.851686 ATAAAGATTGACATTATTCTACTGGCA 57.148 29.630 0.00 0.00 0.00 4.92
394 395 8.579850 AAAGATTGACATTATTCTACTGGCAA 57.420 30.769 0.00 0.00 41.82 4.52
395 396 8.579850 AAGATTGACATTATTCTACTGGCAAA 57.420 30.769 0.00 0.00 41.01 3.68
396 397 7.989826 AGATTGACATTATTCTACTGGCAAAC 58.010 34.615 0.00 0.00 41.01 2.93
397 398 7.831193 AGATTGACATTATTCTACTGGCAAACT 59.169 33.333 0.00 0.00 41.01 2.66
398 399 6.985188 TGACATTATTCTACTGGCAAACTC 57.015 37.500 0.00 0.00 0.00 3.01
399 400 6.472016 TGACATTATTCTACTGGCAAACTCA 58.528 36.000 0.00 0.00 0.00 3.41
400 401 6.939730 TGACATTATTCTACTGGCAAACTCAA 59.060 34.615 0.00 0.00 0.00 3.02
401 402 7.611467 TGACATTATTCTACTGGCAAACTCAAT 59.389 33.333 0.00 0.00 0.00 2.57
402 403 7.989826 ACATTATTCTACTGGCAAACTCAATC 58.010 34.615 0.00 0.00 0.00 2.67
403 404 7.611467 ACATTATTCTACTGGCAAACTCAATCA 59.389 33.333 0.00 0.00 0.00 2.57
404 405 5.886960 ATTCTACTGGCAAACTCAATCAC 57.113 39.130 0.00 0.00 0.00 3.06
405 406 4.350368 TCTACTGGCAAACTCAATCACA 57.650 40.909 0.00 0.00 0.00 3.58
406 407 4.713553 TCTACTGGCAAACTCAATCACAA 58.286 39.130 0.00 0.00 0.00 3.33
407 408 5.316167 TCTACTGGCAAACTCAATCACAAT 58.684 37.500 0.00 0.00 0.00 2.71
408 409 6.472016 TCTACTGGCAAACTCAATCACAATA 58.528 36.000 0.00 0.00 0.00 1.90
409 410 5.376854 ACTGGCAAACTCAATCACAATAC 57.623 39.130 0.00 0.00 0.00 1.89
410 411 4.218417 ACTGGCAAACTCAATCACAATACC 59.782 41.667 0.00 0.00 0.00 2.73
411 412 4.148079 TGGCAAACTCAATCACAATACCA 58.852 39.130 0.00 0.00 0.00 3.25
412 413 4.022416 TGGCAAACTCAATCACAATACCAC 60.022 41.667 0.00 0.00 0.00 4.16
413 414 4.022416 GGCAAACTCAATCACAATACCACA 60.022 41.667 0.00 0.00 0.00 4.17
414 415 4.917415 GCAAACTCAATCACAATACCACAC 59.083 41.667 0.00 0.00 0.00 3.82
415 416 5.507149 GCAAACTCAATCACAATACCACACA 60.507 40.000 0.00 0.00 0.00 3.72
416 417 5.947228 AACTCAATCACAATACCACACAG 57.053 39.130 0.00 0.00 0.00 3.66
417 418 4.973168 ACTCAATCACAATACCACACAGT 58.027 39.130 0.00 0.00 0.00 3.55
418 419 6.109156 ACTCAATCACAATACCACACAGTA 57.891 37.500 0.00 0.00 0.00 2.74
419 420 6.530120 ACTCAATCACAATACCACACAGTAA 58.470 36.000 0.00 0.00 0.00 2.24
420 421 7.168219 ACTCAATCACAATACCACACAGTAAT 58.832 34.615 0.00 0.00 0.00 1.89
421 422 8.318412 ACTCAATCACAATACCACACAGTAATA 58.682 33.333 0.00 0.00 0.00 0.98
422 423 8.716646 TCAATCACAATACCACACAGTAATAG 57.283 34.615 0.00 0.00 0.00 1.73
423 424 7.768582 TCAATCACAATACCACACAGTAATAGG 59.231 37.037 0.00 0.00 0.00 2.57
424 425 5.984725 TCACAATACCACACAGTAATAGGG 58.015 41.667 0.00 0.00 0.00 3.53
425 426 5.722441 TCACAATACCACACAGTAATAGGGA 59.278 40.000 0.00 0.00 0.00 4.20
426 427 6.213802 TCACAATACCACACAGTAATAGGGAA 59.786 38.462 0.00 0.00 0.00 3.97
427 428 6.882140 CACAATACCACACAGTAATAGGGAAA 59.118 38.462 0.00 0.00 0.00 3.13
428 429 7.065803 CACAATACCACACAGTAATAGGGAAAG 59.934 40.741 0.00 0.00 0.00 2.62
429 430 7.037873 ACAATACCACACAGTAATAGGGAAAGA 60.038 37.037 0.00 0.00 0.00 2.52
430 431 7.691993 ATACCACACAGTAATAGGGAAAGAT 57.308 36.000 0.00 0.00 0.00 2.40
431 432 6.388619 ACCACACAGTAATAGGGAAAGATT 57.611 37.500 0.00 0.00 0.00 2.40
432 433 7.504926 ACCACACAGTAATAGGGAAAGATTA 57.495 36.000 0.00 0.00 0.00 1.75
433 434 7.565680 ACCACACAGTAATAGGGAAAGATTAG 58.434 38.462 0.00 0.00 0.00 1.73
434 435 6.992715 CCACACAGTAATAGGGAAAGATTAGG 59.007 42.308 0.00 0.00 0.00 2.69
435 436 6.992715 CACACAGTAATAGGGAAAGATTAGGG 59.007 42.308 0.00 0.00 0.00 3.53
436 437 6.906901 ACACAGTAATAGGGAAAGATTAGGGA 59.093 38.462 0.00 0.00 0.00 4.20
437 438 7.071321 ACACAGTAATAGGGAAAGATTAGGGAG 59.929 40.741 0.00 0.00 0.00 4.30
438 439 7.290248 CACAGTAATAGGGAAAGATTAGGGAGA 59.710 40.741 0.00 0.00 0.00 3.71
439 440 7.511028 ACAGTAATAGGGAAAGATTAGGGAGAG 59.489 40.741 0.00 0.00 0.00 3.20
440 441 7.730784 CAGTAATAGGGAAAGATTAGGGAGAGA 59.269 40.741 0.00 0.00 0.00 3.10
441 442 8.469280 AGTAATAGGGAAAGATTAGGGAGAGAT 58.531 37.037 0.00 0.00 0.00 2.75
442 443 9.771140 GTAATAGGGAAAGATTAGGGAGAGATA 57.229 37.037 0.00 0.00 0.00 1.98
444 445 9.866507 AATAGGGAAAGATTAGGGAGAGATAAT 57.133 33.333 0.00 0.00 0.00 1.28
447 448 9.866507 AGGGAAAGATTAGGGAGAGATAATAAT 57.133 33.333 0.00 0.00 0.00 1.28
459 460 8.887264 GGAGAGATAATAATTAGAGACTCCCA 57.113 38.462 0.00 0.00 35.57 4.37
460 461 9.315363 GGAGAGATAATAATTAGAGACTCCCAA 57.685 37.037 0.00 0.00 35.57 4.12
470 471 6.945636 TTAGAGACTCCCAAGAAATTACCA 57.054 37.500 0.00 0.00 0.00 3.25
471 472 7.510675 TTAGAGACTCCCAAGAAATTACCAT 57.489 36.000 0.00 0.00 0.00 3.55
472 473 5.749462 AGAGACTCCCAAGAAATTACCATG 58.251 41.667 0.00 0.00 0.00 3.66
473 474 5.251700 AGAGACTCCCAAGAAATTACCATGT 59.748 40.000 0.00 0.00 0.00 3.21
474 475 5.892348 AGACTCCCAAGAAATTACCATGTT 58.108 37.500 0.00 0.00 0.00 2.71
475 476 7.027874 AGACTCCCAAGAAATTACCATGTTA 57.972 36.000 0.00 0.00 0.00 2.41
476 477 7.466804 AGACTCCCAAGAAATTACCATGTTAA 58.533 34.615 0.00 0.00 0.00 2.01
477 478 8.116026 AGACTCCCAAGAAATTACCATGTTAAT 58.884 33.333 0.00 0.00 0.00 1.40
478 479 8.664669 ACTCCCAAGAAATTACCATGTTAATT 57.335 30.769 2.61 2.61 0.00 1.40
479 480 9.762381 ACTCCCAAGAAATTACCATGTTAATTA 57.238 29.630 8.48 0.00 0.00 1.40
481 482 8.691797 TCCCAAGAAATTACCATGTTAATTAGC 58.308 33.333 8.48 4.98 0.00 3.09
482 483 8.474025 CCCAAGAAATTACCATGTTAATTAGCA 58.526 33.333 8.48 4.36 0.00 3.49
483 484 9.868277 CCAAGAAATTACCATGTTAATTAGCAA 57.132 29.630 8.48 0.00 0.00 3.91
491 492 7.277174 ACCATGTTAATTAGCAATTAGGAGC 57.723 36.000 6.08 0.00 35.00 4.70
492 493 6.265422 ACCATGTTAATTAGCAATTAGGAGCC 59.735 38.462 6.08 0.00 35.00 4.70
493 494 6.373779 CATGTTAATTAGCAATTAGGAGCCG 58.626 40.000 6.08 0.00 35.00 5.52
494 495 5.433526 TGTTAATTAGCAATTAGGAGCCGT 58.566 37.500 0.00 0.00 35.00 5.68
495 496 5.883673 TGTTAATTAGCAATTAGGAGCCGTT 59.116 36.000 0.00 0.00 35.00 4.44
496 497 6.376018 TGTTAATTAGCAATTAGGAGCCGTTT 59.624 34.615 0.00 0.00 35.00 3.60
497 498 7.553402 TGTTAATTAGCAATTAGGAGCCGTTTA 59.447 33.333 0.00 0.00 35.00 2.01
498 499 8.565416 GTTAATTAGCAATTAGGAGCCGTTTAT 58.435 33.333 0.00 0.00 35.00 1.40
499 500 6.803154 ATTAGCAATTAGGAGCCGTTTATC 57.197 37.500 0.00 0.00 0.00 1.75
500 501 4.423625 AGCAATTAGGAGCCGTTTATCT 57.576 40.909 0.00 0.00 0.00 1.98
501 502 4.130118 AGCAATTAGGAGCCGTTTATCTG 58.870 43.478 0.00 0.00 0.00 2.90
502 503 3.251004 GCAATTAGGAGCCGTTTATCTGG 59.749 47.826 0.00 0.00 0.00 3.86
503 504 4.451900 CAATTAGGAGCCGTTTATCTGGT 58.548 43.478 0.00 0.00 0.00 4.00
504 505 3.536956 TTAGGAGCCGTTTATCTGGTG 57.463 47.619 0.00 0.00 0.00 4.17
505 506 0.541863 AGGAGCCGTTTATCTGGTGG 59.458 55.000 0.00 0.00 0.00 4.61
506 507 0.463833 GGAGCCGTTTATCTGGTGGG 60.464 60.000 0.00 0.00 0.00 4.61
507 508 0.539986 GAGCCGTTTATCTGGTGGGA 59.460 55.000 0.00 0.00 0.00 4.37
508 509 0.252197 AGCCGTTTATCTGGTGGGAC 59.748 55.000 0.00 0.00 0.00 4.46
509 510 0.746923 GCCGTTTATCTGGTGGGACC 60.747 60.000 0.00 0.00 39.22 4.46
510 511 0.461339 CCGTTTATCTGGTGGGACCG 60.461 60.000 0.00 0.00 42.58 4.79
511 512 0.533491 CGTTTATCTGGTGGGACCGA 59.467 55.000 0.00 0.00 42.58 4.69
512 513 1.066716 CGTTTATCTGGTGGGACCGAA 60.067 52.381 0.00 0.00 42.58 4.30
513 514 2.419574 CGTTTATCTGGTGGGACCGAAT 60.420 50.000 0.00 0.00 42.58 3.34
514 515 3.617284 GTTTATCTGGTGGGACCGAATT 58.383 45.455 0.00 0.00 42.58 2.17
515 516 3.553828 TTATCTGGTGGGACCGAATTC 57.446 47.619 0.00 0.00 42.58 2.17
516 517 0.178068 ATCTGGTGGGACCGAATTCG 59.822 55.000 20.92 20.92 42.58 3.34
531 532 4.921547 CGAATTCGGTTCAGATCTACTCA 58.078 43.478 20.16 0.00 36.60 3.41
532 533 5.524284 CGAATTCGGTTCAGATCTACTCAT 58.476 41.667 20.16 0.00 36.60 2.90
533 534 6.669278 CGAATTCGGTTCAGATCTACTCATA 58.331 40.000 20.16 0.00 36.60 2.15
534 535 7.309177 CGAATTCGGTTCAGATCTACTCATAT 58.691 38.462 20.16 0.00 36.60 1.78
535 536 8.451748 CGAATTCGGTTCAGATCTACTCATATA 58.548 37.037 20.16 0.00 36.60 0.86
716 2765 7.034685 TCCGATTAACGTCTGAGATCAATTA 57.965 36.000 0.00 0.00 40.78 1.40
717 2766 7.485810 TCCGATTAACGTCTGAGATCAATTAA 58.514 34.615 0.00 0.00 40.78 1.40
718 2767 7.977293 TCCGATTAACGTCTGAGATCAATTAAA 59.023 33.333 0.00 0.00 40.78 1.52
719 2768 8.269424 CCGATTAACGTCTGAGATCAATTAAAG 58.731 37.037 0.00 0.00 40.78 1.85
722 2771 6.727824 AACGTCTGAGATCAATTAAAGTGG 57.272 37.500 0.00 0.00 0.00 4.00
724 2773 6.231211 ACGTCTGAGATCAATTAAAGTGGTT 58.769 36.000 0.00 0.00 0.00 3.67
725 2774 6.369065 ACGTCTGAGATCAATTAAAGTGGTTC 59.631 38.462 0.00 0.00 0.00 3.62
726 2775 6.368791 CGTCTGAGATCAATTAAAGTGGTTCA 59.631 38.462 0.00 0.00 0.00 3.18
727 2776 7.412346 CGTCTGAGATCAATTAAAGTGGTTCAG 60.412 40.741 0.00 0.00 0.00 3.02
728 2777 7.389053 GTCTGAGATCAATTAAAGTGGTTCAGT 59.611 37.037 0.00 0.00 32.39 3.41
729 2778 7.388776 TCTGAGATCAATTAAAGTGGTTCAGTG 59.611 37.037 0.00 0.00 32.39 3.66
730 2779 6.430925 TGAGATCAATTAAAGTGGTTCAGTGG 59.569 38.462 0.00 0.00 0.00 4.00
731 2780 6.306987 AGATCAATTAAAGTGGTTCAGTGGT 58.693 36.000 0.00 0.00 0.00 4.16
732 2781 7.458397 AGATCAATTAAAGTGGTTCAGTGGTA 58.542 34.615 0.00 0.00 0.00 3.25
733 2782 8.109634 AGATCAATTAAAGTGGTTCAGTGGTAT 58.890 33.333 0.00 0.00 0.00 2.73
734 2783 7.447374 TCAATTAAAGTGGTTCAGTGGTATG 57.553 36.000 0.00 0.00 0.00 2.39
735 2784 7.001674 TCAATTAAAGTGGTTCAGTGGTATGT 58.998 34.615 0.00 0.00 0.00 2.29
736 2785 7.504238 TCAATTAAAGTGGTTCAGTGGTATGTT 59.496 33.333 0.00 0.00 0.00 2.71
737 2786 8.788806 CAATTAAAGTGGTTCAGTGGTATGTTA 58.211 33.333 0.00 0.00 0.00 2.41
738 2787 8.927675 ATTAAAGTGGTTCAGTGGTATGTTAA 57.072 30.769 0.00 0.00 0.00 2.01
739 2788 6.628919 AAAGTGGTTCAGTGGTATGTTAAC 57.371 37.500 0.00 0.00 0.00 2.01
740 2789 4.312443 AGTGGTTCAGTGGTATGTTAACG 58.688 43.478 0.26 0.00 0.00 3.18
741 2790 4.039488 AGTGGTTCAGTGGTATGTTAACGA 59.961 41.667 0.26 0.00 0.00 3.85
742 2791 4.751098 GTGGTTCAGTGGTATGTTAACGAA 59.249 41.667 0.26 0.00 0.00 3.85
743 2792 5.410439 GTGGTTCAGTGGTATGTTAACGAAT 59.590 40.000 0.26 0.00 0.00 3.34
744 2793 5.998981 TGGTTCAGTGGTATGTTAACGAATT 59.001 36.000 0.26 0.00 0.00 2.17
745 2794 6.072948 TGGTTCAGTGGTATGTTAACGAATTG 60.073 38.462 0.26 0.00 0.00 2.32
746 2795 6.311723 GTTCAGTGGTATGTTAACGAATTGG 58.688 40.000 0.26 0.00 0.00 3.16
747 2796 5.553123 TCAGTGGTATGTTAACGAATTGGT 58.447 37.500 0.26 0.00 0.00 3.67
748 2797 5.640357 TCAGTGGTATGTTAACGAATTGGTC 59.360 40.000 0.26 0.00 0.00 4.02
772 2821 7.587629 TCGATTACGAAAACTAGACTTTCTCA 58.412 34.615 15.35 5.22 45.74 3.27
773 2822 8.077991 TCGATTACGAAAACTAGACTTTCTCAA 58.922 33.333 15.35 11.02 45.74 3.02
774 2823 8.861101 CGATTACGAAAACTAGACTTTCTCAAT 58.139 33.333 15.35 13.71 42.66 2.57
779 2828 9.760077 ACGAAAACTAGACTTTCTCAATTTAGA 57.240 29.630 15.35 0.00 31.80 2.10
790 2839 9.430623 ACTTTCTCAATTTAGAGACTTAAGAGC 57.569 33.333 10.09 0.57 43.91 4.09
791 2840 9.429359 CTTTCTCAATTTAGAGACTTAAGAGCA 57.571 33.333 10.09 0.00 43.91 4.26
792 2841 8.994429 TTCTCAATTTAGAGACTTAAGAGCAG 57.006 34.615 10.09 0.00 43.91 4.24
793 2842 8.354711 TCTCAATTTAGAGACTTAAGAGCAGA 57.645 34.615 10.09 0.00 39.62 4.26
794 2843 8.807118 TCTCAATTTAGAGACTTAAGAGCAGAA 58.193 33.333 10.09 0.00 39.62 3.02
795 2844 8.994429 TCAATTTAGAGACTTAAGAGCAGAAG 57.006 34.615 10.09 0.00 0.00 2.85
796 2845 8.807118 TCAATTTAGAGACTTAAGAGCAGAAGA 58.193 33.333 10.09 0.00 0.00 2.87
797 2846 9.429359 CAATTTAGAGACTTAAGAGCAGAAGAA 57.571 33.333 10.09 0.00 0.00 2.52
800 2849 9.832445 TTTAGAGACTTAAGAGCAGAAGAAAAA 57.168 29.630 10.09 0.00 0.00 1.94
824 2873 3.100207 GGAAAATTCCACCATCTCCCA 57.900 47.619 7.32 0.00 46.76 4.37
825 2874 3.440127 GGAAAATTCCACCATCTCCCAA 58.560 45.455 7.32 0.00 46.76 4.12
826 2875 3.837731 GGAAAATTCCACCATCTCCCAAA 59.162 43.478 7.32 0.00 46.76 3.28
827 2876 4.285775 GGAAAATTCCACCATCTCCCAAAA 59.714 41.667 7.32 0.00 46.76 2.44
828 2877 5.221823 GGAAAATTCCACCATCTCCCAAAAA 60.222 40.000 7.32 0.00 46.76 1.94
829 2878 5.488262 AAATTCCACCATCTCCCAAAAAG 57.512 39.130 0.00 0.00 0.00 2.27
830 2879 3.893753 TTCCACCATCTCCCAAAAAGA 57.106 42.857 0.00 0.00 0.00 2.52
831 2880 3.439857 TCCACCATCTCCCAAAAAGAG 57.560 47.619 0.00 0.00 0.00 2.85
832 2881 2.986019 TCCACCATCTCCCAAAAAGAGA 59.014 45.455 0.00 0.00 44.20 3.10
1621 5722 3.181455 TGTCATTATCTCATTCCACCCCG 60.181 47.826 0.00 0.00 0.00 5.73
1692 5798 2.282180 GGCACCCACATCGTTGGT 60.282 61.111 0.00 0.00 34.44 3.67
2157 6279 1.271856 TGATTTCCTCGTGCCACCTA 58.728 50.000 0.00 0.00 0.00 3.08
2306 6431 3.794028 CGAGCTTGTTACTCTCTACATGC 59.206 47.826 0.00 0.00 42.46 4.06
2490 6615 4.201657 TGGTGAGAGCACATATCAATTGG 58.798 43.478 5.42 0.00 46.96 3.16
2734 7071 8.467963 AATGCATTTGGTATTATCTCATGTCA 57.532 30.769 5.99 0.00 29.31 3.58
2901 7238 5.094387 TCTTGACAGGAAAAGGAGGACTAT 58.906 41.667 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.443266 GGAAGAGCAGCGCCGAGT 62.443 66.667 2.29 0.00 0.00 4.18
1 2 4.140599 AGGAAGAGCAGCGCCGAG 62.141 66.667 2.29 0.00 0.00 4.63
2 3 4.135153 GAGGAAGAGCAGCGCCGA 62.135 66.667 2.29 0.00 0.00 5.54
4 5 3.438017 ATCGAGGAAGAGCAGCGCC 62.438 63.158 2.29 0.00 0.00 6.53
5 6 2.105930 ATCGAGGAAGAGCAGCGC 59.894 61.111 0.00 0.00 0.00 5.92
6 7 2.236382 GCATCGAGGAAGAGCAGCG 61.236 63.158 0.00 0.00 0.00 5.18
7 8 2.236382 CGCATCGAGGAAGAGCAGC 61.236 63.158 0.00 0.00 0.00 5.25
8 9 1.435105 TCGCATCGAGGAAGAGCAG 59.565 57.895 0.00 0.00 0.00 4.24
9 10 3.603365 TCGCATCGAGGAAGAGCA 58.397 55.556 0.00 0.00 0.00 4.26
18 19 1.282875 CGCTGATACCTCGCATCGA 59.717 57.895 0.00 0.00 0.00 3.59
19 20 0.999228 GACGCTGATACCTCGCATCG 60.999 60.000 0.00 0.00 0.00 3.84
20 21 0.312416 AGACGCTGATACCTCGCATC 59.688 55.000 0.00 0.00 0.00 3.91
21 22 0.312416 GAGACGCTGATACCTCGCAT 59.688 55.000 0.00 0.00 0.00 4.73
22 23 1.728069 GAGACGCTGATACCTCGCA 59.272 57.895 0.00 0.00 0.00 5.10
23 24 1.369448 CGAGACGCTGATACCTCGC 60.369 63.158 0.00 0.00 41.31 5.03
24 25 4.903730 CGAGACGCTGATACCTCG 57.096 61.111 0.00 0.00 41.71 4.63
35 36 0.463295 TCCTACACCTAGGCGAGACG 60.463 60.000 9.30 0.00 39.78 4.18
36 37 1.134159 TCTCCTACACCTAGGCGAGAC 60.134 57.143 9.30 0.00 39.78 3.36
37 38 1.210538 TCTCCTACACCTAGGCGAGA 58.789 55.000 9.30 8.67 39.78 4.04
38 39 1.600023 CTCTCCTACACCTAGGCGAG 58.400 60.000 9.30 6.40 42.83 5.03
39 40 0.465824 GCTCTCCTACACCTAGGCGA 60.466 60.000 9.30 0.00 39.78 5.54
40 41 0.752009 TGCTCTCCTACACCTAGGCG 60.752 60.000 9.30 0.63 39.78 5.52
41 42 0.747852 GTGCTCTCCTACACCTAGGC 59.252 60.000 9.30 0.00 39.78 3.93
42 43 1.025812 CGTGCTCTCCTACACCTAGG 58.974 60.000 7.41 7.41 41.19 3.02
43 44 1.402259 CACGTGCTCTCCTACACCTAG 59.598 57.143 0.82 0.00 33.09 3.02
44 45 1.003928 TCACGTGCTCTCCTACACCTA 59.996 52.381 11.67 0.00 33.09 3.08
45 46 0.251209 TCACGTGCTCTCCTACACCT 60.251 55.000 11.67 0.00 33.09 4.00
46 47 0.818296 ATCACGTGCTCTCCTACACC 59.182 55.000 11.67 0.00 33.09 4.16
47 48 1.202313 GGATCACGTGCTCTCCTACAC 60.202 57.143 18.05 0.00 0.00 2.90
48 49 1.103803 GGATCACGTGCTCTCCTACA 58.896 55.000 18.05 0.00 0.00 2.74
49 50 0.386113 GGGATCACGTGCTCTCCTAC 59.614 60.000 22.58 7.53 0.00 3.18
50 51 1.101635 CGGGATCACGTGCTCTCCTA 61.102 60.000 22.58 3.01 0.00 2.94
51 52 2.418910 CGGGATCACGTGCTCTCCT 61.419 63.158 22.58 2.16 0.00 3.69
52 53 2.105128 CGGGATCACGTGCTCTCC 59.895 66.667 18.05 18.06 0.00 3.71
53 54 2.105128 CCGGGATCACGTGCTCTC 59.895 66.667 17.58 13.93 0.00 3.20
54 55 3.461773 CCCGGGATCACGTGCTCT 61.462 66.667 18.48 2.19 0.00 4.09
57 58 4.856801 ATGCCCGGGATCACGTGC 62.857 66.667 29.31 18.43 37.74 5.34
58 59 2.588877 GATGCCCGGGATCACGTG 60.589 66.667 29.31 9.94 0.00 4.49
59 60 4.221422 CGATGCCCGGGATCACGT 62.221 66.667 29.31 7.64 33.91 4.49
60 61 2.154798 ATACGATGCCCGGGATCACG 62.155 60.000 29.31 24.30 43.93 4.35
61 62 0.892755 TATACGATGCCCGGGATCAC 59.107 55.000 29.31 6.82 43.93 3.06
62 63 1.860641 ATATACGATGCCCGGGATCA 58.139 50.000 29.31 15.13 43.93 2.92
63 64 3.306088 CCATATATACGATGCCCGGGATC 60.306 52.174 29.31 22.10 43.93 3.36
64 65 2.632996 CCATATATACGATGCCCGGGAT 59.367 50.000 29.31 15.45 43.93 3.85
65 66 2.036387 CCATATATACGATGCCCGGGA 58.964 52.381 29.31 10.35 43.93 5.14
66 67 1.070134 CCCATATATACGATGCCCGGG 59.930 57.143 19.09 19.09 43.93 5.73
67 68 2.035961 CTCCCATATATACGATGCCCGG 59.964 54.545 0.00 0.00 43.93 5.73
68 69 2.035961 CCTCCCATATATACGATGCCCG 59.964 54.545 0.00 0.00 45.44 6.13
69 70 2.368875 CCCTCCCATATATACGATGCCC 59.631 54.545 0.00 0.00 0.00 5.36
70 71 3.039011 ACCCTCCCATATATACGATGCC 58.961 50.000 0.00 0.00 0.00 4.40
71 72 4.755266 AACCCTCCCATATATACGATGC 57.245 45.455 0.00 0.00 0.00 3.91
72 73 6.134055 TCCTAACCCTCCCATATATACGATG 58.866 44.000 0.00 0.00 0.00 3.84
73 74 6.351317 TCCTAACCCTCCCATATATACGAT 57.649 41.667 0.00 0.00 0.00 3.73
74 75 5.801720 TCCTAACCCTCCCATATATACGA 57.198 43.478 0.00 0.00 0.00 3.43
75 76 5.363005 CCTTCCTAACCCTCCCATATATACG 59.637 48.000 0.00 0.00 0.00 3.06
76 77 6.269974 ACCTTCCTAACCCTCCCATATATAC 58.730 44.000 0.00 0.00 0.00 1.47
77 78 6.509633 ACCTTCCTAACCCTCCCATATATA 57.490 41.667 0.00 0.00 0.00 0.86
78 79 5.385753 ACCTTCCTAACCCTCCCATATAT 57.614 43.478 0.00 0.00 0.00 0.86
79 80 4.864252 ACCTTCCTAACCCTCCCATATA 57.136 45.455 0.00 0.00 0.00 0.86
80 81 3.745678 ACCTTCCTAACCCTCCCATAT 57.254 47.619 0.00 0.00 0.00 1.78
81 82 3.390819 GAACCTTCCTAACCCTCCCATA 58.609 50.000 0.00 0.00 0.00 2.74
82 83 2.206223 GAACCTTCCTAACCCTCCCAT 58.794 52.381 0.00 0.00 0.00 4.00
83 84 1.665137 GAACCTTCCTAACCCTCCCA 58.335 55.000 0.00 0.00 0.00 4.37
84 85 0.540454 CGAACCTTCCTAACCCTCCC 59.460 60.000 0.00 0.00 0.00 4.30
85 86 1.206610 GTCGAACCTTCCTAACCCTCC 59.793 57.143 0.00 0.00 0.00 4.30
86 87 2.094130 CAGTCGAACCTTCCTAACCCTC 60.094 54.545 0.00 0.00 0.00 4.30
87 88 1.900486 CAGTCGAACCTTCCTAACCCT 59.100 52.381 0.00 0.00 0.00 4.34
88 89 1.897802 TCAGTCGAACCTTCCTAACCC 59.102 52.381 0.00 0.00 0.00 4.11
89 90 3.672767 TTCAGTCGAACCTTCCTAACC 57.327 47.619 0.00 0.00 0.00 2.85
90 91 4.629092 ACTTTCAGTCGAACCTTCCTAAC 58.371 43.478 0.00 0.00 0.00 2.34
91 92 4.262335 GGACTTTCAGTCGAACCTTCCTAA 60.262 45.833 0.00 0.00 45.96 2.69
92 93 3.257624 GGACTTTCAGTCGAACCTTCCTA 59.742 47.826 0.00 0.00 45.96 2.94
93 94 2.037381 GGACTTTCAGTCGAACCTTCCT 59.963 50.000 0.00 0.00 45.96 3.36
94 95 2.037381 AGGACTTTCAGTCGAACCTTCC 59.963 50.000 0.00 0.00 45.96 3.46
95 96 3.060602 CAGGACTTTCAGTCGAACCTTC 58.939 50.000 0.00 0.00 45.96 3.46
96 97 2.698797 TCAGGACTTTCAGTCGAACCTT 59.301 45.455 0.00 0.00 45.96 3.50
97 98 2.317040 TCAGGACTTTCAGTCGAACCT 58.683 47.619 0.00 0.00 45.96 3.50
98 99 2.814280 TCAGGACTTTCAGTCGAACC 57.186 50.000 0.00 0.00 45.96 3.62
99 100 2.996621 CCATCAGGACTTTCAGTCGAAC 59.003 50.000 0.00 0.00 45.96 3.95
100 101 2.632996 ACCATCAGGACTTTCAGTCGAA 59.367 45.455 0.00 0.00 45.96 3.71
101 102 2.029020 CACCATCAGGACTTTCAGTCGA 60.029 50.000 0.00 0.00 45.96 4.20
102 103 2.029020 TCACCATCAGGACTTTCAGTCG 60.029 50.000 0.00 0.00 45.96 4.18
103 104 3.007398 ACTCACCATCAGGACTTTCAGTC 59.993 47.826 0.00 0.00 44.32 3.51
104 105 2.975489 ACTCACCATCAGGACTTTCAGT 59.025 45.455 0.00 0.00 38.69 3.41
105 106 3.692257 ACTCACCATCAGGACTTTCAG 57.308 47.619 0.00 0.00 38.69 3.02
106 107 4.103153 AGAAACTCACCATCAGGACTTTCA 59.897 41.667 0.00 0.00 38.69 2.69
107 108 4.646572 AGAAACTCACCATCAGGACTTTC 58.353 43.478 0.00 0.00 38.69 2.62
108 109 4.713792 AGAAACTCACCATCAGGACTTT 57.286 40.909 0.00 0.00 38.69 2.66
109 110 4.713792 AAGAAACTCACCATCAGGACTT 57.286 40.909 0.00 0.00 38.69 3.01
110 111 4.141390 ACAAAGAAACTCACCATCAGGACT 60.141 41.667 0.00 0.00 38.69 3.85
111 112 4.137543 ACAAAGAAACTCACCATCAGGAC 58.862 43.478 0.00 0.00 38.69 3.85
112 113 4.437682 ACAAAGAAACTCACCATCAGGA 57.562 40.909 0.00 0.00 38.69 3.86
113 114 5.520376 AAACAAAGAAACTCACCATCAGG 57.480 39.130 0.00 0.00 42.21 3.86
114 115 6.799512 AGAAAACAAAGAAACTCACCATCAG 58.200 36.000 0.00 0.00 0.00 2.90
115 116 6.773976 AGAAAACAAAGAAACTCACCATCA 57.226 33.333 0.00 0.00 0.00 3.07
116 117 9.750125 AATAAGAAAACAAAGAAACTCACCATC 57.250 29.630 0.00 0.00 0.00 3.51
118 119 9.364989 CAAATAAGAAAACAAAGAAACTCACCA 57.635 29.630 0.00 0.00 0.00 4.17
119 120 9.581099 TCAAATAAGAAAACAAAGAAACTCACC 57.419 29.630 0.00 0.00 0.00 4.02
146 147 9.305555 AGTCATGTACTACTACTAGAAAACCAA 57.694 33.333 0.00 0.00 36.36 3.67
147 148 8.874744 AGTCATGTACTACTACTAGAAAACCA 57.125 34.615 0.00 0.00 36.36 3.67
152 153 9.511272 TGTCAAAGTCATGTACTACTACTAGAA 57.489 33.333 0.00 0.00 37.50 2.10
153 154 9.682465 ATGTCAAAGTCATGTACTACTACTAGA 57.318 33.333 0.00 0.00 37.50 2.43
154 155 9.723447 CATGTCAAAGTCATGTACTACTACTAG 57.277 37.037 0.00 0.00 37.50 2.57
155 156 9.457436 TCATGTCAAAGTCATGTACTACTACTA 57.543 33.333 0.00 0.00 42.03 1.82
156 157 8.244802 GTCATGTCAAAGTCATGTACTACTACT 58.755 37.037 0.00 0.00 42.03 2.57
157 158 8.027189 TGTCATGTCAAAGTCATGTACTACTAC 58.973 37.037 0.00 0.00 42.03 2.73
158 159 8.027189 GTGTCATGTCAAAGTCATGTACTACTA 58.973 37.037 0.00 0.00 42.03 1.82
159 160 6.868864 GTGTCATGTCAAAGTCATGTACTACT 59.131 38.462 0.00 0.00 42.03 2.57
160 161 6.183359 CGTGTCATGTCAAAGTCATGTACTAC 60.183 42.308 0.00 0.00 42.03 2.73
161 162 5.861787 CGTGTCATGTCAAAGTCATGTACTA 59.138 40.000 0.00 0.00 42.03 1.82
162 163 4.686091 CGTGTCATGTCAAAGTCATGTACT 59.314 41.667 0.00 0.00 42.03 2.73
163 164 4.447724 ACGTGTCATGTCAAAGTCATGTAC 59.552 41.667 0.00 0.00 42.03 2.90
164 165 4.627058 ACGTGTCATGTCAAAGTCATGTA 58.373 39.130 0.00 0.00 42.03 2.29
165 166 3.466836 ACGTGTCATGTCAAAGTCATGT 58.533 40.909 0.00 0.00 42.03 3.21
166 167 4.432892 CGTACGTGTCATGTCAAAGTCATG 60.433 45.833 7.22 0.00 42.53 3.07
167 168 3.673338 CGTACGTGTCATGTCAAAGTCAT 59.327 43.478 7.22 0.00 0.00 3.06
168 169 3.047093 CGTACGTGTCATGTCAAAGTCA 58.953 45.455 7.22 0.00 0.00 3.41
169 170 3.047796 ACGTACGTGTCATGTCAAAGTC 58.952 45.455 22.14 0.34 0.00 3.01
170 171 3.088194 ACGTACGTGTCATGTCAAAGT 57.912 42.857 22.14 1.35 0.00 2.66
171 172 4.200827 CAAACGTACGTGTCATGTCAAAG 58.799 43.478 23.57 0.00 0.00 2.77
172 173 3.617706 ACAAACGTACGTGTCATGTCAAA 59.382 39.130 23.57 0.00 0.00 2.69
173 174 3.188492 ACAAACGTACGTGTCATGTCAA 58.812 40.909 23.57 0.00 0.00 3.18
174 175 2.811855 ACAAACGTACGTGTCATGTCA 58.188 42.857 23.57 0.00 0.00 3.58
175 176 4.283950 GTACAAACGTACGTGTCATGTC 57.716 45.455 23.57 13.57 30.57 3.06
216 217 0.458889 TCTATCCGTCCGCCAAAACG 60.459 55.000 0.00 0.00 38.58 3.60
217 218 1.004595 GTCTATCCGTCCGCCAAAAC 58.995 55.000 0.00 0.00 0.00 2.43
218 219 0.458889 CGTCTATCCGTCCGCCAAAA 60.459 55.000 0.00 0.00 0.00 2.44
219 220 1.140161 CGTCTATCCGTCCGCCAAA 59.860 57.895 0.00 0.00 0.00 3.28
220 221 1.314534 TTCGTCTATCCGTCCGCCAA 61.315 55.000 0.00 0.00 0.00 4.52
221 222 1.750018 TTCGTCTATCCGTCCGCCA 60.750 57.895 0.00 0.00 0.00 5.69
222 223 1.298938 GTTCGTCTATCCGTCCGCC 60.299 63.158 0.00 0.00 0.00 6.13
223 224 1.653533 CGTTCGTCTATCCGTCCGC 60.654 63.158 0.00 0.00 0.00 5.54
224 225 0.930310 TACGTTCGTCTATCCGTCCG 59.070 55.000 0.00 0.00 34.95 4.79
225 226 2.095853 TGTTACGTTCGTCTATCCGTCC 59.904 50.000 0.00 0.00 34.95 4.79
226 227 3.389687 TGTTACGTTCGTCTATCCGTC 57.610 47.619 0.00 0.00 34.95 4.79
227 228 3.624861 AGATGTTACGTTCGTCTATCCGT 59.375 43.478 11.63 0.00 37.33 4.69
228 229 4.206698 AGATGTTACGTTCGTCTATCCG 57.793 45.455 11.63 0.00 30.57 4.18
229 230 6.693342 CAAAAGATGTTACGTTCGTCTATCC 58.307 40.000 13.05 0.00 31.87 2.59
230 231 6.034683 AGCAAAAGATGTTACGTTCGTCTATC 59.965 38.462 13.05 5.02 31.87 2.08
231 232 5.867716 AGCAAAAGATGTTACGTTCGTCTAT 59.132 36.000 13.05 5.74 31.87 1.98
232 233 5.224888 AGCAAAAGATGTTACGTTCGTCTA 58.775 37.500 13.05 0.00 31.87 2.59
233 234 4.056050 AGCAAAAGATGTTACGTTCGTCT 58.944 39.130 0.00 0.95 33.27 4.18
234 235 4.385244 AGCAAAAGATGTTACGTTCGTC 57.615 40.909 0.00 0.00 0.00 4.20
235 236 4.806342 AAGCAAAAGATGTTACGTTCGT 57.194 36.364 0.00 2.91 0.00 3.85
236 237 5.912528 ACTAAGCAAAAGATGTTACGTTCG 58.087 37.500 0.00 0.00 0.00 3.95
237 238 6.884187 TGACTAAGCAAAAGATGTTACGTTC 58.116 36.000 0.00 0.00 0.00 3.95
238 239 6.854496 TGACTAAGCAAAAGATGTTACGTT 57.146 33.333 0.00 0.00 0.00 3.99
239 240 6.854496 TTGACTAAGCAAAAGATGTTACGT 57.146 33.333 0.00 0.00 0.00 3.57
240 241 7.766723 CTTTGACTAAGCAAAAGATGTTACG 57.233 36.000 0.00 0.00 37.32 3.18
274 275 3.694566 GGATTCACCGCCATCTACTTTTT 59.305 43.478 0.00 0.00 0.00 1.94
275 276 3.279434 GGATTCACCGCCATCTACTTTT 58.721 45.455 0.00 0.00 0.00 2.27
276 277 2.919228 GGATTCACCGCCATCTACTTT 58.081 47.619 0.00 0.00 0.00 2.66
277 278 2.622064 GGATTCACCGCCATCTACTT 57.378 50.000 0.00 0.00 0.00 2.24
288 289 3.127030 GGATTGACTTTGTCGGATTCACC 59.873 47.826 0.00 0.00 34.95 4.02
289 290 3.181520 CGGATTGACTTTGTCGGATTCAC 60.182 47.826 0.00 0.00 34.95 3.18
290 291 3.000041 CGGATTGACTTTGTCGGATTCA 59.000 45.455 0.00 0.00 34.95 2.57
291 292 3.000727 ACGGATTGACTTTGTCGGATTC 58.999 45.455 0.00 0.00 34.95 2.52
292 293 2.742053 CACGGATTGACTTTGTCGGATT 59.258 45.455 0.00 0.00 34.95 3.01
293 294 2.346803 CACGGATTGACTTTGTCGGAT 58.653 47.619 0.00 0.00 34.95 4.18
294 295 1.790755 CACGGATTGACTTTGTCGGA 58.209 50.000 0.00 0.00 34.95 4.55
295 296 0.165944 GCACGGATTGACTTTGTCGG 59.834 55.000 0.00 0.00 34.95 4.79
296 297 1.148310 AGCACGGATTGACTTTGTCG 58.852 50.000 0.00 0.00 34.95 4.35
297 298 3.626028 AAAGCACGGATTGACTTTGTC 57.374 42.857 0.00 0.00 33.18 3.18
298 299 5.705609 AATAAAGCACGGATTGACTTTGT 57.294 34.783 0.00 0.00 34.97 2.83
299 300 9.438291 CTAATAATAAAGCACGGATTGACTTTG 57.562 33.333 0.00 0.00 34.97 2.77
300 301 8.621286 CCTAATAATAAAGCACGGATTGACTTT 58.379 33.333 0.00 0.00 36.31 2.66
301 302 7.228706 CCCTAATAATAAAGCACGGATTGACTT 59.771 37.037 0.00 0.00 0.00 3.01
302 303 6.710744 CCCTAATAATAAAGCACGGATTGACT 59.289 38.462 0.00 0.00 0.00 3.41
303 304 6.708949 TCCCTAATAATAAAGCACGGATTGAC 59.291 38.462 0.00 0.00 0.00 3.18
304 305 6.833041 TCCCTAATAATAAAGCACGGATTGA 58.167 36.000 0.00 0.00 0.00 2.57
305 306 7.504924 TTCCCTAATAATAAAGCACGGATTG 57.495 36.000 0.00 0.00 0.00 2.67
306 307 7.996644 TCTTTCCCTAATAATAAAGCACGGATT 59.003 33.333 0.00 0.00 0.00 3.01
307 308 7.514721 TCTTTCCCTAATAATAAAGCACGGAT 58.485 34.615 0.00 0.00 0.00 4.18
308 309 6.891388 TCTTTCCCTAATAATAAAGCACGGA 58.109 36.000 0.00 0.00 0.00 4.69
309 310 7.745620 ATCTTTCCCTAATAATAAAGCACGG 57.254 36.000 0.00 0.00 0.00 4.94
310 311 8.443937 GCTATCTTTCCCTAATAATAAAGCACG 58.556 37.037 0.00 0.00 0.00 5.34
311 312 9.284968 TGCTATCTTTCCCTAATAATAAAGCAC 57.715 33.333 0.00 0.00 0.00 4.40
312 313 9.284968 GTGCTATCTTTCCCTAATAATAAAGCA 57.715 33.333 0.00 0.00 0.00 3.91
313 314 9.284968 TGTGCTATCTTTCCCTAATAATAAAGC 57.715 33.333 0.00 0.00 0.00 3.51
319 320 9.725019 CATATGTGTGCTATCTTTCCCTAATAA 57.275 33.333 0.00 0.00 0.00 1.40
320 321 7.824289 GCATATGTGTGCTATCTTTCCCTAATA 59.176 37.037 4.29 0.00 41.82 0.98
321 322 6.656693 GCATATGTGTGCTATCTTTCCCTAAT 59.343 38.462 4.29 0.00 41.82 1.73
322 323 5.997746 GCATATGTGTGCTATCTTTCCCTAA 59.002 40.000 4.29 0.00 41.82 2.69
323 324 5.513094 GGCATATGTGTGCTATCTTTCCCTA 60.513 44.000 4.29 0.00 44.45 3.53
324 325 4.392940 GCATATGTGTGCTATCTTTCCCT 58.607 43.478 4.29 0.00 41.82 4.20
325 326 3.503748 GGCATATGTGTGCTATCTTTCCC 59.496 47.826 4.29 0.00 44.45 3.97
326 327 3.503748 GGGCATATGTGTGCTATCTTTCC 59.496 47.826 4.29 0.00 44.45 3.13
327 328 3.187227 CGGGCATATGTGTGCTATCTTTC 59.813 47.826 4.29 0.00 44.45 2.62
328 329 3.141398 CGGGCATATGTGTGCTATCTTT 58.859 45.455 4.29 0.00 44.45 2.52
329 330 2.104792 ACGGGCATATGTGTGCTATCTT 59.895 45.455 4.29 0.00 44.45 2.40
330 331 1.694150 ACGGGCATATGTGTGCTATCT 59.306 47.619 4.29 0.00 44.45 1.98
331 332 1.800586 CACGGGCATATGTGTGCTATC 59.199 52.381 4.29 0.00 44.45 2.08
332 333 1.882912 CACGGGCATATGTGTGCTAT 58.117 50.000 4.29 0.00 44.45 2.97
333 334 3.377933 CACGGGCATATGTGTGCTA 57.622 52.632 4.29 0.00 44.45 3.49
334 335 4.223800 CACGGGCATATGTGTGCT 57.776 55.556 4.29 0.00 44.45 4.40
336 337 2.708865 CGCACGGGCATATGTGTG 59.291 61.111 11.77 15.93 41.24 3.82
337 338 1.376683 AACGCACGGGCATATGTGT 60.377 52.632 11.77 0.00 41.21 3.72
338 339 1.062365 CAACGCACGGGCATATGTG 59.938 57.895 11.77 0.00 41.24 3.21
339 340 2.760159 GCAACGCACGGGCATATGT 61.760 57.895 11.77 0.00 41.24 2.29
340 341 2.024588 GCAACGCACGGGCATATG 59.975 61.111 11.77 6.17 41.24 1.78
341 342 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
342 343 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
343 344 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
353 354 4.976224 ATCTTTATTACCCCGTTGCAAC 57.024 40.909 19.89 19.89 0.00 4.17
354 355 5.010933 TCAATCTTTATTACCCCGTTGCAA 58.989 37.500 0.00 0.00 0.00 4.08
355 356 4.396790 GTCAATCTTTATTACCCCGTTGCA 59.603 41.667 0.00 0.00 0.00 4.08
356 357 4.396790 TGTCAATCTTTATTACCCCGTTGC 59.603 41.667 0.00 0.00 0.00 4.17
357 358 6.693315 ATGTCAATCTTTATTACCCCGTTG 57.307 37.500 0.00 0.00 0.00 4.10
358 359 8.990163 ATAATGTCAATCTTTATTACCCCGTT 57.010 30.769 0.00 0.00 0.00 4.44
359 360 8.990163 AATAATGTCAATCTTTATTACCCCGT 57.010 30.769 0.00 0.00 35.80 5.28
360 361 9.284968 AGAATAATGTCAATCTTTATTACCCCG 57.715 33.333 0.00 0.00 36.88 5.73
367 368 9.851686 TGCCAGTAGAATAATGTCAATCTTTAT 57.148 29.630 0.00 0.00 34.29 1.40
368 369 9.679661 TTGCCAGTAGAATAATGTCAATCTTTA 57.320 29.630 0.00 0.00 29.19 1.85
369 370 8.579850 TTGCCAGTAGAATAATGTCAATCTTT 57.420 30.769 0.00 0.00 29.19 2.52
370 371 8.462016 GTTTGCCAGTAGAATAATGTCAATCTT 58.538 33.333 0.00 0.00 34.45 2.40
371 372 7.831193 AGTTTGCCAGTAGAATAATGTCAATCT 59.169 33.333 0.00 0.00 34.45 2.40
372 373 7.989826 AGTTTGCCAGTAGAATAATGTCAATC 58.010 34.615 0.00 0.00 34.45 2.67
373 374 7.611467 TGAGTTTGCCAGTAGAATAATGTCAAT 59.389 33.333 0.00 0.00 34.45 2.57
374 375 6.939730 TGAGTTTGCCAGTAGAATAATGTCAA 59.060 34.615 0.00 0.00 32.48 3.18
375 376 6.472016 TGAGTTTGCCAGTAGAATAATGTCA 58.528 36.000 0.00 0.00 34.29 3.58
376 377 6.985188 TGAGTTTGCCAGTAGAATAATGTC 57.015 37.500 0.00 0.00 34.29 3.06
377 378 7.611467 TGATTGAGTTTGCCAGTAGAATAATGT 59.389 33.333 0.00 0.00 34.29 2.71
378 379 7.912250 GTGATTGAGTTTGCCAGTAGAATAATG 59.088 37.037 0.00 0.00 36.21 1.90
379 380 7.611467 TGTGATTGAGTTTGCCAGTAGAATAAT 59.389 33.333 0.00 0.00 0.00 1.28
380 381 6.939730 TGTGATTGAGTTTGCCAGTAGAATAA 59.060 34.615 0.00 0.00 0.00 1.40
381 382 6.472016 TGTGATTGAGTTTGCCAGTAGAATA 58.528 36.000 0.00 0.00 0.00 1.75
382 383 5.316167 TGTGATTGAGTTTGCCAGTAGAAT 58.684 37.500 0.00 0.00 0.00 2.40
383 384 4.713553 TGTGATTGAGTTTGCCAGTAGAA 58.286 39.130 0.00 0.00 0.00 2.10
384 385 4.350368 TGTGATTGAGTTTGCCAGTAGA 57.650 40.909 0.00 0.00 0.00 2.59
385 386 5.633830 ATTGTGATTGAGTTTGCCAGTAG 57.366 39.130 0.00 0.00 0.00 2.57
386 387 5.414454 GGTATTGTGATTGAGTTTGCCAGTA 59.586 40.000 0.00 0.00 0.00 2.74
387 388 4.218417 GGTATTGTGATTGAGTTTGCCAGT 59.782 41.667 0.00 0.00 0.00 4.00
388 389 4.218200 TGGTATTGTGATTGAGTTTGCCAG 59.782 41.667 0.00 0.00 0.00 4.85
389 390 4.022416 GTGGTATTGTGATTGAGTTTGCCA 60.022 41.667 0.00 0.00 0.00 4.92
390 391 4.022416 TGTGGTATTGTGATTGAGTTTGCC 60.022 41.667 0.00 0.00 0.00 4.52
391 392 4.917415 GTGTGGTATTGTGATTGAGTTTGC 59.083 41.667 0.00 0.00 0.00 3.68
392 393 6.070897 TGTGTGGTATTGTGATTGAGTTTG 57.929 37.500 0.00 0.00 0.00 2.93
393 394 5.827797 ACTGTGTGGTATTGTGATTGAGTTT 59.172 36.000 0.00 0.00 0.00 2.66
394 395 5.376625 ACTGTGTGGTATTGTGATTGAGTT 58.623 37.500 0.00 0.00 0.00 3.01
395 396 4.973168 ACTGTGTGGTATTGTGATTGAGT 58.027 39.130 0.00 0.00 0.00 3.41
396 397 7.615582 ATTACTGTGTGGTATTGTGATTGAG 57.384 36.000 0.00 0.00 0.00 3.02
397 398 7.768582 CCTATTACTGTGTGGTATTGTGATTGA 59.231 37.037 0.00 0.00 0.00 2.57
398 399 7.012327 CCCTATTACTGTGTGGTATTGTGATTG 59.988 40.741 0.00 0.00 0.00 2.67
399 400 7.054124 CCCTATTACTGTGTGGTATTGTGATT 58.946 38.462 0.00 0.00 0.00 2.57
400 401 6.385759 TCCCTATTACTGTGTGGTATTGTGAT 59.614 38.462 0.00 0.00 0.00 3.06
401 402 5.722441 TCCCTATTACTGTGTGGTATTGTGA 59.278 40.000 0.00 0.00 0.00 3.58
402 403 5.984725 TCCCTATTACTGTGTGGTATTGTG 58.015 41.667 0.00 0.00 0.00 3.33
403 404 6.630203 TTCCCTATTACTGTGTGGTATTGT 57.370 37.500 0.00 0.00 0.00 2.71
404 405 7.335627 TCTTTCCCTATTACTGTGTGGTATTG 58.664 38.462 0.00 0.00 0.00 1.90
405 406 7.504926 TCTTTCCCTATTACTGTGTGGTATT 57.495 36.000 0.00 0.00 0.00 1.89
406 407 7.691993 ATCTTTCCCTATTACTGTGTGGTAT 57.308 36.000 0.00 0.00 0.00 2.73
407 408 7.504926 AATCTTTCCCTATTACTGTGTGGTA 57.495 36.000 0.00 0.00 0.00 3.25
408 409 6.388619 AATCTTTCCCTATTACTGTGTGGT 57.611 37.500 0.00 0.00 0.00 4.16
409 410 6.992715 CCTAATCTTTCCCTATTACTGTGTGG 59.007 42.308 0.00 0.00 0.00 4.17
410 411 6.992715 CCCTAATCTTTCCCTATTACTGTGTG 59.007 42.308 0.00 0.00 0.00 3.82
411 412 6.906901 TCCCTAATCTTTCCCTATTACTGTGT 59.093 38.462 0.00 0.00 0.00 3.72
412 413 7.290248 TCTCCCTAATCTTTCCCTATTACTGTG 59.710 40.741 0.00 0.00 0.00 3.66
413 414 7.371043 TCTCCCTAATCTTTCCCTATTACTGT 58.629 38.462 0.00 0.00 0.00 3.55
414 415 7.730784 TCTCTCCCTAATCTTTCCCTATTACTG 59.269 40.741 0.00 0.00 0.00 2.74
415 416 7.838241 TCTCTCCCTAATCTTTCCCTATTACT 58.162 38.462 0.00 0.00 0.00 2.24
416 417 8.673456 ATCTCTCCCTAATCTTTCCCTATTAC 57.327 38.462 0.00 0.00 0.00 1.89
418 419 9.866507 ATTATCTCTCCCTAATCTTTCCCTATT 57.133 33.333 0.00 0.00 0.00 1.73
421 422 9.866507 ATTATTATCTCTCCCTAATCTTTCCCT 57.133 33.333 0.00 0.00 0.00 4.20
433 434 8.301252 GGGAGTCTCTAATTATTATCTCTCCC 57.699 42.308 18.67 18.67 46.46 4.30
434 435 8.887264 TGGGAGTCTCTAATTATTATCTCTCC 57.113 38.462 0.00 12.54 37.56 3.71
444 445 9.053472 TGGTAATTTCTTGGGAGTCTCTAATTA 57.947 33.333 0.00 0.00 0.00 1.40
445 446 7.928873 TGGTAATTTCTTGGGAGTCTCTAATT 58.071 34.615 0.00 0.00 0.00 1.40
446 447 7.510675 TGGTAATTTCTTGGGAGTCTCTAAT 57.489 36.000 0.00 0.00 0.00 1.73
447 448 6.945636 TGGTAATTTCTTGGGAGTCTCTAA 57.054 37.500 0.00 0.00 0.00 2.10
448 449 6.443849 ACATGGTAATTTCTTGGGAGTCTCTA 59.556 38.462 0.00 0.00 0.00 2.43
449 450 5.251700 ACATGGTAATTTCTTGGGAGTCTCT 59.748 40.000 0.00 0.00 0.00 3.10
450 451 5.501156 ACATGGTAATTTCTTGGGAGTCTC 58.499 41.667 0.00 0.00 0.00 3.36
451 452 5.520748 ACATGGTAATTTCTTGGGAGTCT 57.479 39.130 0.00 0.00 0.00 3.24
452 453 7.696992 TTAACATGGTAATTTCTTGGGAGTC 57.303 36.000 0.00 0.00 0.00 3.36
453 454 8.664669 AATTAACATGGTAATTTCTTGGGAGT 57.335 30.769 20.71 0.00 31.07 3.85
455 456 8.691797 GCTAATTAACATGGTAATTTCTTGGGA 58.308 33.333 28.79 11.93 35.70 4.37
456 457 8.474025 TGCTAATTAACATGGTAATTTCTTGGG 58.526 33.333 28.79 15.17 35.70 4.12
457 458 9.868277 TTGCTAATTAACATGGTAATTTCTTGG 57.132 29.630 28.79 12.47 35.70 3.61
465 466 8.846211 GCTCCTAATTGCTAATTAACATGGTAA 58.154 33.333 5.50 5.50 33.26 2.85
466 467 7.447238 GGCTCCTAATTGCTAATTAACATGGTA 59.553 37.037 0.00 0.00 33.26 3.25
467 468 6.265422 GGCTCCTAATTGCTAATTAACATGGT 59.735 38.462 0.00 0.00 33.26 3.55
468 469 6.568462 CGGCTCCTAATTGCTAATTAACATGG 60.568 42.308 0.00 0.00 33.26 3.66
469 470 6.017109 ACGGCTCCTAATTGCTAATTAACATG 60.017 38.462 0.00 0.00 33.26 3.21
470 471 6.062095 ACGGCTCCTAATTGCTAATTAACAT 58.938 36.000 0.00 0.00 33.26 2.71
471 472 5.433526 ACGGCTCCTAATTGCTAATTAACA 58.566 37.500 0.00 0.00 33.26 2.41
472 473 6.373186 AACGGCTCCTAATTGCTAATTAAC 57.627 37.500 0.00 0.00 33.26 2.01
473 474 8.685838 ATAAACGGCTCCTAATTGCTAATTAA 57.314 30.769 0.00 0.00 33.26 1.40
474 475 8.154856 AGATAAACGGCTCCTAATTGCTAATTA 58.845 33.333 0.00 0.00 32.38 1.40
475 476 6.998673 AGATAAACGGCTCCTAATTGCTAATT 59.001 34.615 0.00 0.00 34.90 1.40
476 477 6.428159 CAGATAAACGGCTCCTAATTGCTAAT 59.572 38.462 0.00 0.00 0.00 1.73
477 478 5.758296 CAGATAAACGGCTCCTAATTGCTAA 59.242 40.000 0.00 0.00 0.00 3.09
478 479 5.297547 CAGATAAACGGCTCCTAATTGCTA 58.702 41.667 0.00 0.00 0.00 3.49
479 480 4.130118 CAGATAAACGGCTCCTAATTGCT 58.870 43.478 0.00 0.00 0.00 3.91
480 481 3.251004 CCAGATAAACGGCTCCTAATTGC 59.749 47.826 0.00 0.00 0.00 3.56
481 482 4.273480 CACCAGATAAACGGCTCCTAATTG 59.727 45.833 0.00 0.00 0.00 2.32
482 483 4.451900 CACCAGATAAACGGCTCCTAATT 58.548 43.478 0.00 0.00 0.00 1.40
483 484 3.181454 CCACCAGATAAACGGCTCCTAAT 60.181 47.826 0.00 0.00 0.00 1.73
484 485 2.169769 CCACCAGATAAACGGCTCCTAA 59.830 50.000 0.00 0.00 0.00 2.69
485 486 1.760613 CCACCAGATAAACGGCTCCTA 59.239 52.381 0.00 0.00 0.00 2.94
486 487 0.541863 CCACCAGATAAACGGCTCCT 59.458 55.000 0.00 0.00 0.00 3.69
487 488 0.463833 CCCACCAGATAAACGGCTCC 60.464 60.000 0.00 0.00 0.00 4.70
488 489 0.539986 TCCCACCAGATAAACGGCTC 59.460 55.000 0.00 0.00 0.00 4.70
489 490 0.252197 GTCCCACCAGATAAACGGCT 59.748 55.000 0.00 0.00 0.00 5.52
490 491 0.746923 GGTCCCACCAGATAAACGGC 60.747 60.000 0.00 0.00 38.42 5.68
491 492 0.461339 CGGTCCCACCAGATAAACGG 60.461 60.000 0.00 0.00 38.47 4.44
492 493 0.533491 TCGGTCCCACCAGATAAACG 59.467 55.000 0.00 0.00 38.47 3.60
493 494 2.773993 TTCGGTCCCACCAGATAAAC 57.226 50.000 0.00 0.00 38.47 2.01
494 495 3.680475 CGAATTCGGTCCCACCAGATAAA 60.680 47.826 20.16 0.00 38.47 1.40
495 496 2.159014 CGAATTCGGTCCCACCAGATAA 60.159 50.000 20.16 0.00 38.47 1.75
496 497 1.411246 CGAATTCGGTCCCACCAGATA 59.589 52.381 20.16 0.00 38.47 1.98
497 498 0.178068 CGAATTCGGTCCCACCAGAT 59.822 55.000 20.16 0.00 38.47 2.90
498 499 1.594833 CGAATTCGGTCCCACCAGA 59.405 57.895 20.16 0.00 38.47 3.86
499 500 4.201951 CGAATTCGGTCCCACCAG 57.798 61.111 20.16 0.00 38.47 4.00
509 510 4.921547 TGAGTAGATCTGAACCGAATTCG 58.078 43.478 20.92 20.92 40.56 3.34
513 514 9.521841 AGATTATATGAGTAGATCTGAACCGAA 57.478 33.333 5.18 0.00 0.00 4.30
589 590 6.687081 CAGTTTACTGTGTGGTTTTAAGGA 57.313 37.500 1.69 0.00 39.09 3.36
716 2765 5.237779 CGTTAACATACCACTGAACCACTTT 59.762 40.000 6.39 0.00 0.00 2.66
717 2766 4.753107 CGTTAACATACCACTGAACCACTT 59.247 41.667 6.39 0.00 0.00 3.16
718 2767 4.039488 TCGTTAACATACCACTGAACCACT 59.961 41.667 6.39 0.00 0.00 4.00
719 2768 4.309099 TCGTTAACATACCACTGAACCAC 58.691 43.478 6.39 0.00 0.00 4.16
722 2771 6.072893 ACCAATTCGTTAACATACCACTGAAC 60.073 38.462 6.39 0.00 0.00 3.18
724 2773 5.553123 ACCAATTCGTTAACATACCACTGA 58.447 37.500 6.39 0.00 0.00 3.41
725 2774 5.445407 CGACCAATTCGTTAACATACCACTG 60.445 44.000 6.39 0.00 43.24 3.66
726 2775 4.628333 CGACCAATTCGTTAACATACCACT 59.372 41.667 6.39 0.00 43.24 4.00
727 2776 4.889241 CGACCAATTCGTTAACATACCAC 58.111 43.478 6.39 0.00 43.24 4.16
740 2789 7.275123 AGTCTAGTTTTCGTAATCGACCAATTC 59.725 37.037 0.00 0.00 46.03 2.17
741 2790 7.095270 AGTCTAGTTTTCGTAATCGACCAATT 58.905 34.615 0.00 0.00 46.03 2.32
742 2791 6.628185 AGTCTAGTTTTCGTAATCGACCAAT 58.372 36.000 0.00 0.00 46.03 3.16
743 2792 6.017400 AGTCTAGTTTTCGTAATCGACCAA 57.983 37.500 0.00 0.00 46.03 3.67
744 2793 5.633830 AGTCTAGTTTTCGTAATCGACCA 57.366 39.130 0.00 0.00 46.03 4.02
745 2794 6.805760 AGAAAGTCTAGTTTTCGTAATCGACC 59.194 38.462 13.15 0.00 46.03 4.79
746 2795 7.536622 TGAGAAAGTCTAGTTTTCGTAATCGAC 59.463 37.037 13.15 0.00 46.03 4.20
747 2796 7.587629 TGAGAAAGTCTAGTTTTCGTAATCGA 58.412 34.615 13.15 0.00 44.66 3.59
748 2797 7.792383 TGAGAAAGTCTAGTTTTCGTAATCG 57.208 36.000 13.15 0.00 39.07 3.34
753 2802 9.760077 TCTAAATTGAGAAAGTCTAGTTTTCGT 57.240 29.630 13.15 5.91 39.07 3.85
764 2813 9.430623 GCTCTTAAGTCTCTAAATTGAGAAAGT 57.569 33.333 1.63 0.00 43.68 2.66
765 2814 9.429359 TGCTCTTAAGTCTCTAAATTGAGAAAG 57.571 33.333 1.63 0.00 43.68 2.62
766 2815 9.429359 CTGCTCTTAAGTCTCTAAATTGAGAAA 57.571 33.333 1.63 0.00 43.68 2.52
767 2816 8.807118 TCTGCTCTTAAGTCTCTAAATTGAGAA 58.193 33.333 1.63 0.00 43.68 2.87
768 2817 8.354711 TCTGCTCTTAAGTCTCTAAATTGAGA 57.645 34.615 1.63 0.00 40.39 3.27
769 2818 8.994429 TTCTGCTCTTAAGTCTCTAAATTGAG 57.006 34.615 1.63 0.00 35.52 3.02
770 2819 8.807118 TCTTCTGCTCTTAAGTCTCTAAATTGA 58.193 33.333 1.63 0.00 0.00 2.57
771 2820 8.994429 TCTTCTGCTCTTAAGTCTCTAAATTG 57.006 34.615 1.63 0.00 0.00 2.32
774 2823 9.832445 TTTTTCTTCTGCTCTTAAGTCTCTAAA 57.168 29.630 1.63 0.00 0.00 1.85
799 2848 8.935339 TGGGAGATGGTGGAATTTTCCCATTT 62.935 42.308 5.28 0.17 45.79 2.32
800 2849 7.550067 TGGGAGATGGTGGAATTTTCCCATT 62.550 44.000 5.28 0.00 45.79 3.16
801 2850 6.131904 TGGGAGATGGTGGAATTTTCCCAT 62.132 45.833 5.28 4.19 45.79 4.00
805 2854 5.482163 TTTTGGGAGATGGTGGAATTTTC 57.518 39.130 0.00 0.00 0.00 2.29
806 2855 5.606329 TCTTTTTGGGAGATGGTGGAATTTT 59.394 36.000 0.00 0.00 0.00 1.82
807 2856 5.154418 TCTTTTTGGGAGATGGTGGAATTT 58.846 37.500 0.00 0.00 0.00 1.82
808 2857 4.750941 TCTTTTTGGGAGATGGTGGAATT 58.249 39.130 0.00 0.00 0.00 2.17
809 2858 4.044571 TCTCTTTTTGGGAGATGGTGGAAT 59.955 41.667 0.00 0.00 35.25 3.01
810 2859 3.397618 TCTCTTTTTGGGAGATGGTGGAA 59.602 43.478 0.00 0.00 35.25 3.53
811 2860 2.986019 TCTCTTTTTGGGAGATGGTGGA 59.014 45.455 0.00 0.00 35.25 4.02
812 2861 3.439857 TCTCTTTTTGGGAGATGGTGG 57.560 47.619 0.00 0.00 35.25 4.61
818 2867 2.108075 TGCCACATCTCTTTTTGGGAGA 59.892 45.455 0.00 0.00 42.89 3.71
819 2868 2.490903 CTGCCACATCTCTTTTTGGGAG 59.509 50.000 0.00 0.00 40.65 4.30
820 2869 2.108075 TCTGCCACATCTCTTTTTGGGA 59.892 45.455 0.00 0.00 0.00 4.37
821 2870 2.229784 GTCTGCCACATCTCTTTTTGGG 59.770 50.000 0.00 0.00 0.00 4.12
822 2871 2.095567 CGTCTGCCACATCTCTTTTTGG 60.096 50.000 0.00 0.00 0.00 3.28
823 2872 2.666619 GCGTCTGCCACATCTCTTTTTG 60.667 50.000 0.00 0.00 33.98 2.44
824 2873 1.537202 GCGTCTGCCACATCTCTTTTT 59.463 47.619 0.00 0.00 33.98 1.94
825 2874 1.160137 GCGTCTGCCACATCTCTTTT 58.840 50.000 0.00 0.00 33.98 2.27
826 2875 2.846371 GCGTCTGCCACATCTCTTT 58.154 52.632 0.00 0.00 33.98 2.52
827 2876 4.606071 GCGTCTGCCACATCTCTT 57.394 55.556 0.00 0.00 33.98 2.85
898 2947 3.568538 GAATTGATCCACATATTGCGGC 58.431 45.455 0.00 0.00 0.00 6.53
1621 5722 7.617041 AAGAAGAAAAGCTATACCATGTGTC 57.383 36.000 0.00 0.00 0.00 3.67
1682 5788 7.773224 TGAGAAATATAAATCCACCAACGATGT 59.227 33.333 0.00 0.00 0.00 3.06
1692 5798 8.089625 TGTCTGACCTGAGAAATATAAATCCA 57.910 34.615 5.17 0.00 0.00 3.41
1812 5919 4.484236 TCACGCATCATCCAAACAAAATC 58.516 39.130 0.00 0.00 0.00 2.17
2157 6279 3.790091 CCTGCGCTGCACATATAGATAT 58.210 45.455 9.73 0.00 33.79 1.63
2306 6431 5.645067 TGTAGCTCTCATCCAACTTGAAATG 59.355 40.000 0.00 0.00 0.00 2.32
2490 6615 9.233232 CAAACTAACCTGAGTATTGTTCAAAAC 57.767 33.333 0.00 0.00 0.00 2.43
2734 7071 9.555727 TTTTGCACTTTACAGTACTAAGAAGAT 57.444 29.630 10.24 0.00 0.00 2.40
2892 7229 4.774726 TCCATAAGATGCTGATAGTCCTCC 59.225 45.833 0.00 0.00 0.00 4.30
2901 7238 9.749340 ATTTGATGAATATCCATAAGATGCTGA 57.251 29.630 0.00 0.00 36.33 4.26
3168 7506 2.323968 TGCGCATGCCAGACTTATAA 57.676 45.000 13.15 0.00 41.78 0.98
3169 7507 2.145536 CATGCGCATGCCAGACTTATA 58.854 47.619 35.08 0.00 41.78 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.