Multiple sequence alignment - TraesCS1D01G323500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G323500 chr1D 100.000 3681 0 0 1 3681 416126002 416129682 0.000000e+00 6798.0
1 TraesCS1D01G323500 chr1D 81.783 1784 269 36 926 2680 416119627 416117871 0.000000e+00 1443.0
2 TraesCS1D01G323500 chr1D 82.588 1654 263 19 1054 2703 416114998 416113366 0.000000e+00 1435.0
3 TraesCS1D01G323500 chr1D 82.652 807 96 22 2092 2884 416212805 416213581 0.000000e+00 675.0
4 TraesCS1D01G323500 chr1D 84.375 224 33 2 1061 1283 416307913 416308135 6.190000e-53 219.0
5 TraesCS1D01G323500 chr1D 88.356 146 17 0 3504 3649 416215013 416215158 3.780000e-40 176.0
6 TraesCS1D01G323500 chr1B 90.333 2524 154 21 1017 3505 562488726 562491194 0.000000e+00 3227.0
7 TraesCS1D01G323500 chr1B 82.990 1993 291 21 722 2694 562459693 562457729 0.000000e+00 1759.0
8 TraesCS1D01G323500 chr1B 82.187 1701 274 20 1000 2693 562482050 562480372 0.000000e+00 1435.0
9 TraesCS1D01G323500 chr1B 81.887 1706 278 25 1014 2703 562469929 562468239 0.000000e+00 1410.0
10 TraesCS1D01G323500 chr1B 82.098 1363 223 12 1309 2657 562485663 562484308 0.000000e+00 1146.0
11 TraesCS1D01G323500 chr1B 82.215 939 156 9 1085 2022 562475803 562474875 0.000000e+00 798.0
12 TraesCS1D01G323500 chr1B 86.499 437 42 12 302 722 562488060 562488495 7.200000e-127 464.0
13 TraesCS1D01G323500 chr1B 95.000 200 10 0 722 921 562470125 562469926 7.670000e-82 315.0
14 TraesCS1D01G323500 chr1A 92.602 2244 131 9 654 2891 513660317 513662531 0.000000e+00 3192.0
15 TraesCS1D01G323500 chr1A 82.425 1707 255 27 999 2680 513653931 513652245 0.000000e+00 1448.0
16 TraesCS1D01G323500 chr1A 81.545 1631 277 19 1085 2705 513649764 513648148 0.000000e+00 1323.0
17 TraesCS1D01G323500 chr1A 80.882 1428 233 27 1483 2893 513636505 513635101 0.000000e+00 1088.0
18 TraesCS1D01G323500 chr1A 87.879 165 13 5 3228 3385 513664159 513664323 1.750000e-43 187.0
19 TraesCS1D01G323500 chrUn 81.912 1255 203 16 1018 2262 939895 941135 0.000000e+00 1038.0
20 TraesCS1D01G323500 chrUn 87.212 391 47 3 2265 2653 346791482 346791871 3.370000e-120 442.0
21 TraesCS1D01G323500 chrUn 87.212 391 47 3 2265 2653 396979912 396979523 3.370000e-120 442.0
22 TraesCS1D01G323500 chr5B 96.602 206 6 1 1 205 660798050 660798255 1.270000e-89 340.0
23 TraesCS1D01G323500 chr6A 92.308 208 14 2 1 206 6442888 6443095 1.000000e-75 294.0
24 TraesCS1D01G323500 chr4B 95.652 46 1 1 257 301 652909095 652909050 5.100000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G323500 chr1D 416126002 416129682 3680 False 6798.0 6798 100.0000 1 3681 1 chr1D.!!$F1 3680
1 TraesCS1D01G323500 chr1D 416113366 416119627 6261 True 1439.0 1443 82.1855 926 2703 2 chr1D.!!$R1 1777
2 TraesCS1D01G323500 chr1D 416212805 416215158 2353 False 425.5 675 85.5040 2092 3649 2 chr1D.!!$F3 1557
3 TraesCS1D01G323500 chr1B 562488060 562491194 3134 False 1845.5 3227 88.4160 302 3505 2 chr1B.!!$F1 3203
4 TraesCS1D01G323500 chr1B 562457729 562459693 1964 True 1759.0 1759 82.9900 722 2694 1 chr1B.!!$R1 1972
5 TraesCS1D01G323500 chr1B 562480372 562485663 5291 True 1290.5 1435 82.1425 1000 2693 2 chr1B.!!$R4 1693
6 TraesCS1D01G323500 chr1B 562468239 562470125 1886 True 862.5 1410 88.4435 722 2703 2 chr1B.!!$R3 1981
7 TraesCS1D01G323500 chr1B 562474875 562475803 928 True 798.0 798 82.2150 1085 2022 1 chr1B.!!$R2 937
8 TraesCS1D01G323500 chr1A 513660317 513664323 4006 False 1689.5 3192 90.2405 654 3385 2 chr1A.!!$F1 2731
9 TraesCS1D01G323500 chr1A 513648148 513653931 5783 True 1385.5 1448 81.9850 999 2705 2 chr1A.!!$R2 1706
10 TraesCS1D01G323500 chr1A 513635101 513636505 1404 True 1088.0 1088 80.8820 1483 2893 1 chr1A.!!$R1 1410
11 TraesCS1D01G323500 chrUn 939895 941135 1240 False 1038.0 1038 81.9120 1018 2262 1 chrUn.!!$F1 1244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 445 0.033405 TCTCCTCTTCCCCGACGATT 60.033 55.0 0.00 0.0 0.00 3.34 F
903 1032 1.014352 GAGTGGTTCACAACGCAACT 58.986 50.0 0.78 0.0 36.74 3.16 F
1719 9073 0.107312 CGGTCGGGAAGAGGACTCTA 60.107 60.0 1.69 0.0 39.39 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 8872 0.243636 CGCATCCACCCAAAAGAACC 59.756 55.0 0.00 0.0 0.00 3.62 R
1929 9289 0.250209 GCCGGCTGATGATGATCACT 60.250 55.0 22.15 0.0 34.71 3.41 R
3531 12795 0.107459 GGGGAGCAGGAGTGTGATTC 60.107 60.0 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.853104 TTCAATCGGAAGGCGTCAT 57.147 47.368 2.23 0.00 0.00 3.06
26 27 0.534873 TCAATCGGAAGGCGTCATGA 59.465 50.000 2.23 0.00 0.00 3.07
27 28 1.138859 TCAATCGGAAGGCGTCATGAT 59.861 47.619 0.00 2.37 0.00 2.45
29 30 0.250038 ATCGGAAGGCGTCATGATGG 60.250 55.000 16.59 4.79 0.00 3.51
30 31 1.153369 CGGAAGGCGTCATGATGGT 60.153 57.895 16.59 0.00 0.00 3.55
31 32 0.104120 CGGAAGGCGTCATGATGGTA 59.896 55.000 16.59 0.00 0.00 3.25
33 34 2.146342 GGAAGGCGTCATGATGGTATG 58.854 52.381 16.59 0.00 0.00 2.39
34 35 1.532868 GAAGGCGTCATGATGGTATGC 59.467 52.381 16.59 2.09 0.00 3.14
35 36 0.761187 AGGCGTCATGATGGTATGCT 59.239 50.000 16.59 0.00 0.00 3.79
36 37 1.970640 AGGCGTCATGATGGTATGCTA 59.029 47.619 16.59 0.00 0.00 3.49
37 38 2.028658 AGGCGTCATGATGGTATGCTAG 60.029 50.000 16.59 0.00 0.00 3.42
39 40 3.249091 GCGTCATGATGGTATGCTAGAG 58.751 50.000 16.59 0.00 0.00 2.43
42 43 5.718146 CGTCATGATGGTATGCTAGAGATT 58.282 41.667 7.06 0.00 0.00 2.40
44 45 7.315890 CGTCATGATGGTATGCTAGAGATTTA 58.684 38.462 7.06 0.00 0.00 1.40
45 46 7.978414 CGTCATGATGGTATGCTAGAGATTTAT 59.022 37.037 7.06 0.00 0.00 1.40
70 71 9.979578 ATAATCTGTAGATCATGTTGAGTTCTC 57.020 33.333 0.00 0.00 32.75 2.87
71 72 6.214191 TCTGTAGATCATGTTGAGTTCTCC 57.786 41.667 0.00 0.00 0.00 3.71
72 73 5.954752 TCTGTAGATCATGTTGAGTTCTCCT 59.045 40.000 0.00 0.00 0.00 3.69
73 74 6.438741 TCTGTAGATCATGTTGAGTTCTCCTT 59.561 38.462 0.00 0.00 0.00 3.36
74 75 7.009179 TGTAGATCATGTTGAGTTCTCCTTT 57.991 36.000 0.00 0.00 0.00 3.11
75 76 8.134202 TGTAGATCATGTTGAGTTCTCCTTTA 57.866 34.615 0.00 0.00 0.00 1.85
76 77 8.035394 TGTAGATCATGTTGAGTTCTCCTTTAC 58.965 37.037 0.00 0.00 0.00 2.01
77 78 7.251321 AGATCATGTTGAGTTCTCCTTTACT 57.749 36.000 0.00 0.00 0.00 2.24
78 79 7.684529 AGATCATGTTGAGTTCTCCTTTACTT 58.315 34.615 0.00 0.00 0.00 2.24
80 81 6.826668 TCATGTTGAGTTCTCCTTTACTTGA 58.173 36.000 0.00 0.00 0.00 3.02
81 82 7.453393 TCATGTTGAGTTCTCCTTTACTTGAT 58.547 34.615 0.00 0.00 0.00 2.57
82 83 7.604164 TCATGTTGAGTTCTCCTTTACTTGATC 59.396 37.037 0.00 0.00 0.00 2.92
84 85 7.453393 TGTTGAGTTCTCCTTTACTTGATCAT 58.547 34.615 0.00 0.00 0.00 2.45
85 86 7.939039 TGTTGAGTTCTCCTTTACTTGATCATT 59.061 33.333 0.00 0.00 0.00 2.57
86 87 8.447053 GTTGAGTTCTCCTTTACTTGATCATTC 58.553 37.037 0.00 0.00 0.00 2.67
88 89 8.378565 TGAGTTCTCCTTTACTTGATCATTCTT 58.621 33.333 0.00 0.00 0.00 2.52
89 90 9.225436 GAGTTCTCCTTTACTTGATCATTCTTT 57.775 33.333 0.00 0.00 0.00 2.52
101 102 9.638176 ACTTGATCATTCTTTATTTGCTATCCT 57.362 29.630 0.00 0.00 0.00 3.24
111 112 9.685276 TCTTTATTTGCTATCCTTTCATCTTCA 57.315 29.630 0.00 0.00 0.00 3.02
119 120 9.631257 TGCTATCCTTTCATCTTCAATATTTCA 57.369 29.630 0.00 0.00 0.00 2.69
131 132 8.964476 TCTTCAATATTTCAGAGATAACACCC 57.036 34.615 0.00 0.00 0.00 4.61
132 133 8.772250 TCTTCAATATTTCAGAGATAACACCCT 58.228 33.333 0.00 0.00 0.00 4.34
139 140 6.978674 TTCAGAGATAACACCCTACTATGG 57.021 41.667 0.00 0.00 0.00 2.74
140 141 6.027025 TCAGAGATAACACCCTACTATGGT 57.973 41.667 0.00 0.00 36.21 3.55
141 142 7.157947 TCAGAGATAACACCCTACTATGGTA 57.842 40.000 0.00 0.00 33.84 3.25
143 144 7.504911 TCAGAGATAACACCCTACTATGGTAAC 59.495 40.741 0.00 0.00 33.84 2.50
144 145 7.506261 CAGAGATAACACCCTACTATGGTAACT 59.494 40.741 0.00 0.00 33.84 2.24
146 147 8.703378 AGATAACACCCTACTATGGTAACTAC 57.297 38.462 0.00 0.00 33.84 2.73
147 148 8.509441 AGATAACACCCTACTATGGTAACTACT 58.491 37.037 0.00 0.00 33.84 2.57
148 149 9.799106 GATAACACCCTACTATGGTAACTACTA 57.201 37.037 0.00 0.00 33.84 1.82
149 150 9.804977 ATAACACCCTACTATGGTAACTACTAG 57.195 37.037 0.00 0.00 33.84 2.57
150 151 7.457380 ACACCCTACTATGGTAACTACTAGA 57.543 40.000 0.00 0.00 33.84 2.43
151 152 7.516452 ACACCCTACTATGGTAACTACTAGAG 58.484 42.308 0.00 0.00 33.84 2.43
155 156 7.444792 CCCTACTATGGTAACTACTAGAGTGTG 59.555 44.444 9.89 4.30 39.16 3.82
158 159 3.094572 TGGTAACTACTAGAGTGTGCCC 58.905 50.000 0.00 0.00 38.87 5.36
160 161 3.768215 GGTAACTACTAGAGTGTGCCCTT 59.232 47.826 0.00 0.00 38.87 3.95
161 162 4.142204 GGTAACTACTAGAGTGTGCCCTTC 60.142 50.000 0.00 0.00 38.87 3.46
162 163 3.459710 ACTACTAGAGTGTGCCCTTCT 57.540 47.619 0.00 0.00 36.87 2.85
163 164 3.780626 ACTACTAGAGTGTGCCCTTCTT 58.219 45.455 0.00 0.00 36.87 2.52
166 167 3.507411 ACTAGAGTGTGCCCTTCTTACA 58.493 45.455 0.00 0.00 0.00 2.41
167 168 2.841442 AGAGTGTGCCCTTCTTACAC 57.159 50.000 0.00 0.00 43.71 2.90
168 169 1.348036 AGAGTGTGCCCTTCTTACACC 59.652 52.381 0.00 0.00 44.27 4.16
170 171 0.608308 GTGTGCCCTTCTTACACCCC 60.608 60.000 0.00 0.00 38.93 4.95
173 174 0.770557 TGCCCTTCTTACACCCCAGT 60.771 55.000 0.00 0.00 0.00 4.00
174 175 0.404426 GCCCTTCTTACACCCCAGTT 59.596 55.000 0.00 0.00 0.00 3.16
175 176 1.203013 GCCCTTCTTACACCCCAGTTT 60.203 52.381 0.00 0.00 0.00 2.66
177 178 3.499021 GCCCTTCTTACACCCCAGTTTAA 60.499 47.826 0.00 0.00 0.00 1.52
178 179 4.813133 GCCCTTCTTACACCCCAGTTTAAT 60.813 45.833 0.00 0.00 0.00 1.40
179 180 5.574120 GCCCTTCTTACACCCCAGTTTAATA 60.574 44.000 0.00 0.00 0.00 0.98
182 183 5.703730 TCTTACACCCCAGTTTAATAGGG 57.296 43.478 0.00 0.00 45.75 3.53
188 189 3.275999 CCCCAGTTTAATAGGGTGTTCG 58.724 50.000 0.00 0.00 41.16 3.95
189 190 2.681344 CCCAGTTTAATAGGGTGTTCGC 59.319 50.000 0.00 0.00 37.81 4.70
190 191 3.606687 CCAGTTTAATAGGGTGTTCGCT 58.393 45.455 0.00 0.00 40.03 4.93
191 192 3.621715 CCAGTTTAATAGGGTGTTCGCTC 59.378 47.826 0.00 0.00 37.93 5.03
192 193 4.504858 CAGTTTAATAGGGTGTTCGCTCT 58.495 43.478 0.00 0.00 37.93 4.09
193 194 4.935808 CAGTTTAATAGGGTGTTCGCTCTT 59.064 41.667 0.00 0.00 37.93 2.85
197 198 3.753294 ATAGGGTGTTCGCTCTTATGG 57.247 47.619 0.00 0.00 37.93 2.74
198 199 1.276622 AGGGTGTTCGCTCTTATGGT 58.723 50.000 0.00 0.00 31.01 3.55
200 201 2.835764 AGGGTGTTCGCTCTTATGGTAA 59.164 45.455 0.00 0.00 31.01 2.85
202 203 5.840910 AGGGTGTTCGCTCTTATGGTAACA 61.841 45.833 0.00 0.00 41.67 2.41
216 217 2.231964 TGGTAACACCGGTGATACAGAC 59.768 50.000 39.32 28.36 46.17 3.51
217 218 2.231964 GGTAACACCGGTGATACAGACA 59.768 50.000 39.32 16.04 39.62 3.41
218 219 3.306225 GGTAACACCGGTGATACAGACAA 60.306 47.826 39.32 15.40 39.62 3.18
219 220 2.743636 ACACCGGTGATACAGACAAG 57.256 50.000 40.21 10.24 0.00 3.16
220 221 2.244695 ACACCGGTGATACAGACAAGA 58.755 47.619 40.21 0.00 0.00 3.02
221 222 2.631062 ACACCGGTGATACAGACAAGAA 59.369 45.455 40.21 0.00 0.00 2.52
222 223 3.070446 ACACCGGTGATACAGACAAGAAA 59.930 43.478 40.21 0.00 0.00 2.52
225 226 4.525487 ACCGGTGATACAGACAAGAAAGTA 59.475 41.667 6.12 0.00 0.00 2.24
226 227 5.103000 CCGGTGATACAGACAAGAAAGTAG 58.897 45.833 0.00 0.00 0.00 2.57
227 228 5.105877 CCGGTGATACAGACAAGAAAGTAGA 60.106 44.000 0.00 0.00 0.00 2.59
228 229 6.387465 CGGTGATACAGACAAGAAAGTAGAA 58.613 40.000 0.00 0.00 0.00 2.10
229 230 6.528423 CGGTGATACAGACAAGAAAGTAGAAG 59.472 42.308 0.00 0.00 0.00 2.85
230 231 6.814146 GGTGATACAGACAAGAAAGTAGAAGG 59.186 42.308 0.00 0.00 0.00 3.46
233 234 3.244596 ACAGACAAGAAAGTAGAAGGGGC 60.245 47.826 0.00 0.00 0.00 5.80
234 235 2.028020 AGACAAGAAAGTAGAAGGGGCG 60.028 50.000 0.00 0.00 0.00 6.13
235 236 1.697982 ACAAGAAAGTAGAAGGGGCGT 59.302 47.619 0.00 0.00 0.00 5.68
237 238 1.349067 AGAAAGTAGAAGGGGCGTGT 58.651 50.000 0.00 0.00 0.00 4.49
238 239 1.275573 AGAAAGTAGAAGGGGCGTGTC 59.724 52.381 0.00 0.00 0.00 3.67
239 240 0.323957 AAAGTAGAAGGGGCGTGTCC 59.676 55.000 0.00 0.00 0.00 4.02
248 249 4.468689 GGCGTGTCCCTACCTGGC 62.469 72.222 0.00 0.00 0.00 4.85
249 250 3.702048 GCGTGTCCCTACCTGGCA 61.702 66.667 0.00 0.00 0.00 4.92
251 252 2.669240 GTGTCCCTACCTGGCACC 59.331 66.667 0.00 0.00 30.81 5.01
252 253 2.205749 TGTCCCTACCTGGCACCA 59.794 61.111 0.00 0.00 0.00 4.17
254 255 2.609610 TCCCTACCTGGCACCACC 60.610 66.667 0.00 0.00 39.84 4.61
255 256 3.728373 CCCTACCTGGCACCACCC 61.728 72.222 0.00 0.00 37.83 4.61
256 257 3.728373 CCTACCTGGCACCACCCC 61.728 72.222 0.00 0.00 37.83 4.95
257 258 2.933287 CTACCTGGCACCACCCCA 60.933 66.667 0.00 0.00 37.83 4.96
258 259 2.450699 TACCTGGCACCACCCCAA 60.451 61.111 0.00 0.00 37.83 4.12
260 261 3.902112 CCTGGCACCACCCCAACT 61.902 66.667 0.00 0.00 37.83 3.16
261 262 2.198426 CTGGCACCACCCCAACTT 59.802 61.111 0.00 0.00 37.83 2.66
262 263 1.903404 CTGGCACCACCCCAACTTC 60.903 63.158 0.00 0.00 37.83 3.01
263 264 2.600470 GGCACCACCCCAACTTCC 60.600 66.667 0.00 0.00 0.00 3.46
265 266 1.603739 GCACCACCCCAACTTCCTC 60.604 63.158 0.00 0.00 0.00 3.71
266 267 2.069165 GCACCACCCCAACTTCCTCT 62.069 60.000 0.00 0.00 0.00 3.69
268 269 0.401395 ACCACCCCAACTTCCTCTCA 60.401 55.000 0.00 0.00 0.00 3.27
269 270 0.771127 CCACCCCAACTTCCTCTCAA 59.229 55.000 0.00 0.00 0.00 3.02
271 272 1.699634 CACCCCAACTTCCTCTCAAGA 59.300 52.381 0.00 0.00 0.00 3.02
272 273 1.981495 ACCCCAACTTCCTCTCAAGAG 59.019 52.381 0.00 0.00 41.71 2.85
281 282 1.743252 CTCTCAAGAGGCCCGCAAC 60.743 63.158 0.00 0.00 38.48 4.17
282 283 3.121030 CTCAAGAGGCCCGCAACG 61.121 66.667 0.00 0.00 0.00 4.10
295 296 4.904590 CAACGGTGGGCCCAACCA 62.905 66.667 34.47 4.40 42.05 3.67
301 302 4.011690 TGGGCCCAACCACTAGTT 57.988 55.556 26.33 0.00 42.05 2.24
302 303 2.246483 TGGGCCCAACCACTAGTTT 58.754 52.632 26.33 0.00 42.05 2.66
303 304 0.178975 TGGGCCCAACCACTAGTTTG 60.179 55.000 26.33 0.00 42.05 2.93
304 305 1.532604 GGGCCCAACCACTAGTTTGC 61.533 60.000 19.95 0.00 42.05 3.68
305 306 0.539669 GGCCCAACCACTAGTTTGCT 60.540 55.000 0.00 0.00 36.18 3.91
306 307 1.271707 GGCCCAACCACTAGTTTGCTA 60.272 52.381 0.00 0.00 36.18 3.49
311 312 4.134563 CCAACCACTAGTTTGCTACAAGT 58.865 43.478 0.00 0.00 36.18 3.16
321 322 3.944055 TTGCTACAAGTGACTCTCCTC 57.056 47.619 0.00 0.00 0.00 3.71
324 325 0.803117 TACAAGTGACTCTCCTCGCG 59.197 55.000 0.00 0.00 0.00 5.87
358 361 0.108615 AGGAAGAACATCGCCTCACG 60.109 55.000 0.00 0.00 45.62 4.35
370 373 2.598045 CCTCACGGCGATTCTCATG 58.402 57.895 16.62 0.00 0.00 3.07
424 427 1.986575 GCTTCGCCATGGCAACTCTC 61.987 60.000 34.93 15.12 42.06 3.20
429 432 0.463474 GCCATGGCAACTCTCTCCTC 60.463 60.000 32.08 0.00 41.49 3.71
434 437 0.539518 GGCAACTCTCTCCTCTTCCC 59.460 60.000 0.00 0.00 0.00 3.97
435 438 0.539518 GCAACTCTCTCCTCTTCCCC 59.460 60.000 0.00 0.00 0.00 4.81
442 445 0.033405 TCTCCTCTTCCCCGACGATT 60.033 55.000 0.00 0.00 0.00 3.34
477 480 3.390521 TCTCCACGAAGGCGGCAT 61.391 61.111 13.08 0.00 43.17 4.40
480 483 3.499737 CCACGAAGGCGGCATGAC 61.500 66.667 13.08 0.00 43.17 3.06
581 591 4.701663 CCAATCAGGTCAGCGTGT 57.298 55.556 0.00 0.00 32.77 4.49
586 596 1.230635 ATCAGGTCAGCGTGTTGTGC 61.231 55.000 0.00 0.00 32.77 4.57
650 660 4.617959 CTCACGTTGGTTCTCTCTTGTTA 58.382 43.478 0.00 0.00 0.00 2.41
651 661 4.365723 TCACGTTGGTTCTCTCTTGTTAC 58.634 43.478 0.00 0.00 0.00 2.50
652 662 4.116961 CACGTTGGTTCTCTCTTGTTACA 58.883 43.478 0.00 0.00 0.00 2.41
653 663 4.750098 CACGTTGGTTCTCTCTTGTTACAT 59.250 41.667 0.00 0.00 0.00 2.29
655 665 6.089551 CACGTTGGTTCTCTCTTGTTACATAG 59.910 42.308 0.00 0.00 0.00 2.23
709 725 6.000246 TGATTTGGTTAGCACATATCCTGA 58.000 37.500 0.00 0.00 0.00 3.86
903 1032 1.014352 GAGTGGTTCACAACGCAACT 58.986 50.000 0.78 0.00 36.74 3.16
953 1082 4.202305 CCCTTTCCTGTTGGCAATACAAAA 60.202 41.667 1.92 1.36 31.17 2.44
1095 3721 2.903798 CAGGAACTCAAGATGGAGCTC 58.096 52.381 4.71 4.71 38.50 4.09
1456 8807 2.644798 AGGAAGAACAAGGCCATGTACT 59.355 45.455 15.13 0.00 32.02 2.73
1479 8830 1.101049 CCGACCTGCAAAGTGTGGTT 61.101 55.000 0.00 0.00 32.30 3.67
1543 8894 0.400213 TCTTTTGGGTGGATGCGACT 59.600 50.000 0.00 0.00 0.00 4.18
1719 9073 0.107312 CGGTCGGGAAGAGGACTCTA 60.107 60.000 1.69 0.00 39.39 2.43
1747 9101 1.847328 TGTATGCAAGGACGAGAGGA 58.153 50.000 0.00 0.00 0.00 3.71
1756 9110 1.133513 AGGACGAGAGGATCAGCTCAT 60.134 52.381 12.70 0.00 37.82 2.90
1777 9131 3.951775 ACTTCTCTTCGATTCTGCACT 57.048 42.857 0.00 0.00 0.00 4.40
1929 9289 0.961019 GCATGGACAGTGGAAGCAAA 59.039 50.000 0.00 0.00 0.00 3.68
1993 9353 4.207281 TGCGGCCGATCTTCCTCG 62.207 66.667 33.48 0.00 38.37 4.63
2208 9568 1.820056 CATGCTGAGCAGGCTGAGG 60.820 63.158 20.86 5.42 43.65 3.86
2307 9667 1.413767 CGGACTTCGTCTTGCATCCG 61.414 60.000 6.71 6.71 42.69 4.18
2483 9843 2.529632 GGAATCAAGGTTGCCTCCTTT 58.470 47.619 6.76 0.00 44.36 3.11
2512 9872 7.812191 CCTCATTTGTTCATTTCGTTCCAAATA 59.188 33.333 0.00 0.00 32.82 1.40
2535 9895 2.203480 GGTGCTCCAGGTTTGGCA 60.203 61.111 0.00 0.00 44.63 4.92
2545 9905 2.223805 CCAGGTTTGGCAAAACAGAGTC 60.224 50.000 28.15 8.23 46.30 3.36
2657 10029 5.942961 TCTCTAGTACTCCCCAGTTCATAG 58.057 45.833 0.00 0.00 33.62 2.23
2833 10218 8.962884 AGAAAATGTTGAATACAAGCCTTTTT 57.037 26.923 0.00 0.00 40.89 1.94
2884 10269 9.440784 GTATTTTTCGTGTGTAAGATGTTTGAA 57.559 29.630 0.00 0.00 0.00 2.69
2937 10323 5.949735 TCGAGGGAAGAAATTATTGTTTGC 58.050 37.500 0.00 0.00 0.00 3.68
2939 10325 5.072040 AGGGAAGAAATTATTGTTTGCGG 57.928 39.130 0.00 0.00 0.00 5.69
2953 10339 5.508200 TGTTTGCGGACTCAAAATAACTT 57.492 34.783 0.00 0.00 37.65 2.66
2997 11028 3.987547 AGAGTGCCGATGATGAATAGTG 58.012 45.455 0.00 0.00 0.00 2.74
3003 11034 3.182572 GCCGATGATGAATAGTGTTCGAC 59.817 47.826 0.00 0.00 0.00 4.20
3004 11035 4.359706 CCGATGATGAATAGTGTTCGACA 58.640 43.478 0.00 0.00 0.00 4.35
3024 11055 3.181429 ACACAACAGAGGGACCAAATCAT 60.181 43.478 0.00 0.00 0.00 2.45
3087 11118 1.207791 AGATGATTGTCGAGGGCCTT 58.792 50.000 7.89 0.00 0.00 4.35
3088 11119 1.134280 AGATGATTGTCGAGGGCCTTG 60.134 52.381 15.18 15.18 0.00 3.61
3104 11135 2.162681 CCTTGGGAAGAAGCGAAACAT 58.837 47.619 0.00 0.00 0.00 2.71
3176 12174 3.107601 AGCTGAGCTACCCATTACTTCA 58.892 45.455 4.49 0.00 36.99 3.02
3177 12175 3.713764 AGCTGAGCTACCCATTACTTCAT 59.286 43.478 4.49 0.00 36.99 2.57
3188 12197 5.011635 ACCCATTACTTCATTTGAAACCACC 59.988 40.000 0.00 0.00 33.07 4.61
3190 12199 6.295802 CCCATTACTTCATTTGAAACCACCAT 60.296 38.462 0.00 0.00 33.07 3.55
3191 12200 6.591062 CCATTACTTCATTTGAAACCACCATG 59.409 38.462 0.00 0.00 33.07 3.66
3193 12202 3.244181 ACTTCATTTGAAACCACCATGGC 60.244 43.478 13.04 0.00 42.67 4.40
3194 12203 1.271934 TCATTTGAAACCACCATGGCG 59.728 47.619 13.04 0.90 42.67 5.69
3195 12204 1.000731 CATTTGAAACCACCATGGCGT 59.999 47.619 13.04 5.30 42.67 5.68
3196 12205 0.671251 TTTGAAACCACCATGGCGTC 59.329 50.000 13.04 2.69 42.67 5.19
3197 12206 1.175983 TTGAAACCACCATGGCGTCC 61.176 55.000 13.04 4.99 42.67 4.79
3198 12207 1.303317 GAAACCACCATGGCGTCCT 60.303 57.895 13.04 0.00 42.67 3.85
3199 12208 1.586154 GAAACCACCATGGCGTCCTG 61.586 60.000 13.04 1.37 42.67 3.86
3200 12209 4.722700 ACCACCATGGCGTCCTGC 62.723 66.667 13.04 0.00 42.67 4.85
3232 12274 1.263356 TAGTCACCACAGGCTACCAC 58.737 55.000 0.00 0.00 0.00 4.16
3245 12287 1.558233 CTACCACCGGAACTCCTCTT 58.442 55.000 9.46 0.00 0.00 2.85
3262 12327 2.349590 TCTTGATCGTGCATTGACTGG 58.650 47.619 0.00 0.00 0.00 4.00
3263 12328 0.804364 TTGATCGTGCATTGACTGGC 59.196 50.000 0.00 0.00 0.00 4.85
3264 12329 0.321475 TGATCGTGCATTGACTGGCA 60.321 50.000 0.00 0.00 37.77 4.92
3265 12330 0.376152 GATCGTGCATTGACTGGCAG 59.624 55.000 14.16 14.16 41.35 4.85
3266 12331 1.028330 ATCGTGCATTGACTGGCAGG 61.028 55.000 20.34 0.96 44.72 4.85
3267 12332 1.968017 CGTGCATTGACTGGCAGGT 60.968 57.895 20.34 4.25 41.35 4.00
3268 12333 1.878775 GTGCATTGACTGGCAGGTC 59.121 57.895 20.34 13.90 41.35 3.85
3269 12334 1.303561 TGCATTGACTGGCAGGTCC 60.304 57.895 20.34 8.10 34.58 4.46
3270 12335 1.001641 GCATTGACTGGCAGGTCCT 60.002 57.895 20.34 0.00 35.54 3.85
3271 12336 1.310933 GCATTGACTGGCAGGTCCTG 61.311 60.000 20.34 15.15 39.46 3.86
3272 12337 0.325933 CATTGACTGGCAGGTCCTGA 59.674 55.000 23.77 1.16 37.25 3.86
3273 12338 1.064906 CATTGACTGGCAGGTCCTGAT 60.065 52.381 23.77 4.06 37.25 2.90
3274 12339 0.615331 TTGACTGGCAGGTCCTGATC 59.385 55.000 23.77 13.64 37.25 2.92
3275 12340 0.545071 TGACTGGCAGGTCCTGATCA 60.545 55.000 23.77 17.28 37.25 2.92
3276 12341 0.615331 GACTGGCAGGTCCTGATCAA 59.385 55.000 23.77 3.24 37.25 2.57
3277 12342 1.003580 GACTGGCAGGTCCTGATCAAA 59.996 52.381 23.77 1.45 37.25 2.69
3307 12372 5.063204 TCAAACCTTCACTCGTTGATGAAT 58.937 37.500 4.86 0.00 34.43 2.57
3343 12408 3.063997 GCCATGAGTAAACACCAAGATCG 59.936 47.826 0.00 0.00 0.00 3.69
3347 12412 5.970317 TGAGTAAACACCAAGATCGACTA 57.030 39.130 0.00 0.00 0.00 2.59
3395 12460 1.230635 GCATGCCTGCGGTATCGATT 61.231 55.000 6.36 0.00 38.92 3.34
3423 12488 2.355444 CTCATTGTTGCATCGCCACATA 59.645 45.455 0.00 0.00 34.30 2.29
3436 12501 0.179100 CCACATAGAGCCTCACACGG 60.179 60.000 0.00 0.00 0.00 4.94
3469 12534 0.037697 CGCTACAACCACCTGTGCTA 60.038 55.000 0.00 0.00 0.00 3.49
3505 12570 2.995872 GCCGCCTCTCGAGACAACT 61.996 63.158 12.08 0.00 41.67 3.16
3506 12571 1.153939 CCGCCTCTCGAGACAACTG 60.154 63.158 12.08 0.81 41.67 3.16
3509 12574 1.536943 GCCTCTCGAGACAACTGGGT 61.537 60.000 12.08 0.00 0.00 4.51
3510 12575 0.969894 CCTCTCGAGACAACTGGGTT 59.030 55.000 12.08 0.00 0.00 4.11
3512 12577 0.033504 TCTCGAGACAACTGGGTTGC 59.966 55.000 12.08 4.16 46.20 4.17
3530 12794 1.553690 GCCACCACTGCCCTAGAAGA 61.554 60.000 0.00 0.00 0.00 2.87
3531 12795 0.539051 CCACCACTGCCCTAGAAGAG 59.461 60.000 0.00 0.00 0.00 2.85
3563 12827 0.402121 GCTCCCCAAGAAGACACCTT 59.598 55.000 0.00 0.00 34.81 3.50
3599 12863 3.480133 GCCTAGTGCCCCATCGGT 61.480 66.667 0.00 0.00 0.00 4.69
3601 12865 2.203070 CTAGTGCCCCATCGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
3607 12871 3.120086 GCCCCATCGGTGCAGGTAT 62.120 63.158 5.04 0.00 0.00 2.73
3613 12877 2.303022 CCATCGGTGCAGGTATAAGGAT 59.697 50.000 0.00 0.00 0.00 3.24
3616 12880 2.628178 TCGGTGCAGGTATAAGGATCAG 59.372 50.000 0.00 0.00 0.00 2.90
3649 12913 0.967380 CACTTGGACATTGGCCCCTC 60.967 60.000 5.96 0.00 0.00 4.30
3650 12914 1.383799 CTTGGACATTGGCCCCTCA 59.616 57.895 5.96 0.00 0.00 3.86
3651 12915 0.251742 CTTGGACATTGGCCCCTCAA 60.252 55.000 5.96 0.00 0.00 3.02
3652 12916 0.251742 TTGGACATTGGCCCCTCAAG 60.252 55.000 5.96 0.00 0.00 3.02
3653 12917 1.384191 GGACATTGGCCCCTCAAGT 59.616 57.895 0.00 0.00 0.00 3.16
3654 12918 0.967380 GGACATTGGCCCCTCAAGTG 60.967 60.000 0.00 0.00 0.00 3.16
3655 12919 1.598701 GACATTGGCCCCTCAAGTGC 61.599 60.000 0.00 0.00 0.00 4.40
3656 12920 2.361610 ATTGGCCCCTCAAGTGCG 60.362 61.111 0.00 0.00 0.00 5.34
3657 12921 3.944250 ATTGGCCCCTCAAGTGCGG 62.944 63.158 0.00 0.00 0.00 5.69
3660 12924 3.712907 GCCCCTCAAGTGCGGGTA 61.713 66.667 5.65 0.00 38.40 3.69
3661 12925 2.267961 CCCCTCAAGTGCGGGTAC 59.732 66.667 5.65 0.00 38.40 3.34
3662 12926 2.125673 CCCTCAAGTGCGGGTACG 60.126 66.667 0.00 0.00 44.63 3.67
3663 12927 2.125673 CCTCAAGTGCGGGTACGG 60.126 66.667 0.00 0.00 41.36 4.02
3664 12928 2.125673 CTCAAGTGCGGGTACGGG 60.126 66.667 0.00 0.00 41.36 5.28
3665 12929 2.601067 TCAAGTGCGGGTACGGGA 60.601 61.111 0.00 0.00 41.36 5.14
3666 12930 2.125673 CAAGTGCGGGTACGGGAG 60.126 66.667 0.00 0.00 41.36 4.30
3667 12931 2.283388 AAGTGCGGGTACGGGAGA 60.283 61.111 0.00 0.00 41.36 3.71
3668 12932 1.909781 AAGTGCGGGTACGGGAGAA 60.910 57.895 0.00 0.00 41.36 2.87
3669 12933 1.262640 AAGTGCGGGTACGGGAGAAT 61.263 55.000 0.00 0.00 41.36 2.40
3670 12934 1.219935 GTGCGGGTACGGGAGAATT 59.780 57.895 0.00 0.00 41.36 2.17
3671 12935 0.392060 GTGCGGGTACGGGAGAATTT 60.392 55.000 0.00 0.00 41.36 1.82
3672 12936 0.325602 TGCGGGTACGGGAGAATTTT 59.674 50.000 0.00 0.00 41.36 1.82
3673 12937 1.554160 TGCGGGTACGGGAGAATTTTA 59.446 47.619 0.00 0.00 41.36 1.52
3674 12938 2.171027 TGCGGGTACGGGAGAATTTTAT 59.829 45.455 0.00 0.00 41.36 1.40
3675 12939 2.546789 GCGGGTACGGGAGAATTTTATG 59.453 50.000 0.00 0.00 41.36 1.90
3676 12940 3.742013 GCGGGTACGGGAGAATTTTATGA 60.742 47.826 0.00 0.00 41.36 2.15
3677 12941 4.444536 CGGGTACGGGAGAATTTTATGAA 58.555 43.478 0.00 0.00 36.18 2.57
3678 12942 4.510340 CGGGTACGGGAGAATTTTATGAAG 59.490 45.833 0.00 0.00 36.18 3.02
3679 12943 4.820173 GGGTACGGGAGAATTTTATGAAGG 59.180 45.833 0.00 0.00 0.00 3.46
3680 12944 4.820173 GGTACGGGAGAATTTTATGAAGGG 59.180 45.833 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.534873 TCATGACGCCTTCCGATTGA 59.465 50.000 0.00 0.00 41.02 2.57
8 9 1.262417 CATCATGACGCCTTCCGATTG 59.738 52.381 0.00 0.00 41.02 2.67
10 11 0.250038 CCATCATGACGCCTTCCGAT 60.250 55.000 0.00 0.00 41.02 4.18
11 12 1.143838 CCATCATGACGCCTTCCGA 59.856 57.895 0.00 0.00 41.02 4.55
13 14 2.146342 CATACCATCATGACGCCTTCC 58.854 52.381 0.00 0.00 0.00 3.46
14 15 1.532868 GCATACCATCATGACGCCTTC 59.467 52.381 0.00 0.00 0.00 3.46
15 16 1.141657 AGCATACCATCATGACGCCTT 59.858 47.619 0.00 0.00 0.00 4.35
16 17 0.761187 AGCATACCATCATGACGCCT 59.239 50.000 0.00 0.00 0.00 5.52
19 20 4.773323 TCTCTAGCATACCATCATGACG 57.227 45.455 0.00 0.00 0.00 4.35
44 45 9.979578 GAGAACTCAACATGATCTACAGATTAT 57.020 33.333 0.00 0.00 34.37 1.28
45 46 8.417106 GGAGAACTCAACATGATCTACAGATTA 58.583 37.037 0.00 0.00 34.37 1.75
46 47 7.125507 AGGAGAACTCAACATGATCTACAGATT 59.874 37.037 0.00 0.00 34.37 2.40
47 48 6.610830 AGGAGAACTCAACATGATCTACAGAT 59.389 38.462 0.00 0.00 37.51 2.90
48 49 5.954752 AGGAGAACTCAACATGATCTACAGA 59.045 40.000 0.00 0.00 0.00 3.41
49 50 6.219417 AGGAGAACTCAACATGATCTACAG 57.781 41.667 0.00 0.00 0.00 2.74
50 51 6.611613 AAGGAGAACTCAACATGATCTACA 57.388 37.500 0.00 0.00 0.00 2.74
51 52 8.254508 AGTAAAGGAGAACTCAACATGATCTAC 58.745 37.037 0.00 0.00 0.00 2.59
52 53 8.367660 AGTAAAGGAGAACTCAACATGATCTA 57.632 34.615 0.00 0.00 0.00 1.98
56 57 6.826668 TCAAGTAAAGGAGAACTCAACATGA 58.173 36.000 0.00 3.08 0.00 3.07
57 58 7.388776 TGATCAAGTAAAGGAGAACTCAACATG 59.611 37.037 0.00 0.00 0.00 3.21
58 59 7.453393 TGATCAAGTAAAGGAGAACTCAACAT 58.547 34.615 0.00 0.00 0.00 2.71
59 60 6.826668 TGATCAAGTAAAGGAGAACTCAACA 58.173 36.000 0.00 0.00 0.00 3.33
61 62 8.378565 AGAATGATCAAGTAAAGGAGAACTCAA 58.621 33.333 0.00 0.00 0.00 3.02
62 63 7.911651 AGAATGATCAAGTAAAGGAGAACTCA 58.088 34.615 0.00 0.00 0.00 3.41
63 64 8.785329 AAGAATGATCAAGTAAAGGAGAACTC 57.215 34.615 0.00 0.00 0.00 3.01
75 76 9.638176 AGGATAGCAAATAAAGAATGATCAAGT 57.362 29.630 0.00 0.00 0.00 3.16
85 86 9.685276 TGAAGATGAAAGGATAGCAAATAAAGA 57.315 29.630 0.00 0.00 0.00 2.52
93 94 9.631257 TGAAATATTGAAGATGAAAGGATAGCA 57.369 29.630 0.00 0.00 0.00 3.49
105 106 9.566432 GGGTGTTATCTCTGAAATATTGAAGAT 57.434 33.333 0.00 0.00 0.00 2.40
106 107 8.772250 AGGGTGTTATCTCTGAAATATTGAAGA 58.228 33.333 0.00 0.00 0.00 2.87
107 108 8.970859 AGGGTGTTATCTCTGAAATATTGAAG 57.029 34.615 0.00 0.00 0.00 3.02
108 109 9.832445 GTAGGGTGTTATCTCTGAAATATTGAA 57.168 33.333 0.00 0.00 0.00 2.69
114 115 7.569111 ACCATAGTAGGGTGTTATCTCTGAAAT 59.431 37.037 5.51 0.00 37.23 2.17
115 116 6.901300 ACCATAGTAGGGTGTTATCTCTGAAA 59.099 38.462 5.51 0.00 37.23 2.69
116 117 6.441222 ACCATAGTAGGGTGTTATCTCTGAA 58.559 40.000 5.51 0.00 37.23 3.02
117 118 6.027025 ACCATAGTAGGGTGTTATCTCTGA 57.973 41.667 5.51 0.00 37.23 3.27
118 119 7.506261 AGTTACCATAGTAGGGTGTTATCTCTG 59.494 40.741 16.73 0.00 39.48 3.35
119 120 7.593653 AGTTACCATAGTAGGGTGTTATCTCT 58.406 38.462 16.73 2.13 39.48 3.10
121 122 8.509441 AGTAGTTACCATAGTAGGGTGTTATCT 58.491 37.037 16.73 9.32 39.48 1.98
122 123 8.703378 AGTAGTTACCATAGTAGGGTGTTATC 57.297 38.462 16.73 4.80 39.48 1.75
123 124 9.804977 CTAGTAGTTACCATAGTAGGGTGTTAT 57.195 37.037 16.73 2.88 39.48 1.89
124 125 9.003145 TCTAGTAGTTACCATAGTAGGGTGTTA 57.997 37.037 16.73 3.70 39.48 2.41
126 127 7.128573 ACTCTAGTAGTTACCATAGTAGGGTGT 59.871 40.741 16.73 3.93 38.09 4.16
127 128 7.444792 CACTCTAGTAGTTACCATAGTAGGGTG 59.555 44.444 16.73 11.48 44.87 4.61
128 129 7.128573 ACACTCTAGTAGTTACCATAGTAGGGT 59.871 40.741 11.88 11.88 39.44 4.34
130 131 7.041235 GCACACTCTAGTAGTTACCATAGTAGG 60.041 44.444 0.00 0.00 35.76 3.18
131 132 7.041235 GGCACACTCTAGTAGTTACCATAGTAG 60.041 44.444 0.00 0.00 35.76 2.57
132 133 6.769822 GGCACACTCTAGTAGTTACCATAGTA 59.230 42.308 0.00 0.00 35.76 1.82
133 134 5.593502 GGCACACTCTAGTAGTTACCATAGT 59.406 44.000 0.00 0.00 35.76 2.12
137 138 3.094572 GGGCACACTCTAGTAGTTACCA 58.905 50.000 0.00 0.00 35.76 3.25
139 140 4.705991 AGAAGGGCACACTCTAGTAGTTAC 59.294 45.833 0.00 0.00 35.76 2.50
140 141 4.931914 AGAAGGGCACACTCTAGTAGTTA 58.068 43.478 0.00 0.00 35.76 2.24
141 142 3.780626 AGAAGGGCACACTCTAGTAGTT 58.219 45.455 0.00 0.00 35.76 2.24
143 144 4.705507 TGTAAGAAGGGCACACTCTAGTAG 59.294 45.833 0.00 0.00 0.00 2.57
144 145 4.461781 GTGTAAGAAGGGCACACTCTAGTA 59.538 45.833 0.00 0.00 39.54 1.82
146 147 3.368531 GGTGTAAGAAGGGCACACTCTAG 60.369 52.174 4.31 0.00 41.78 2.43
147 148 2.565834 GGTGTAAGAAGGGCACACTCTA 59.434 50.000 4.31 0.00 41.78 2.43
148 149 1.348036 GGTGTAAGAAGGGCACACTCT 59.652 52.381 4.31 0.00 41.78 3.24
149 150 1.610886 GGGTGTAAGAAGGGCACACTC 60.611 57.143 4.31 0.00 41.78 3.51
150 151 0.400594 GGGTGTAAGAAGGGCACACT 59.599 55.000 4.31 0.00 41.78 3.55
151 152 0.608308 GGGGTGTAAGAAGGGCACAC 60.608 60.000 0.00 0.00 41.44 3.82
155 156 0.404426 AACTGGGGTGTAAGAAGGGC 59.596 55.000 0.00 0.00 0.00 5.19
158 159 6.120220 CCCTATTAAACTGGGGTGTAAGAAG 58.880 44.000 3.61 0.00 37.37 2.85
160 161 5.703730 CCCTATTAAACTGGGGTGTAAGA 57.296 43.478 3.61 0.00 37.37 2.10
167 168 3.275999 CGAACACCCTATTAAACTGGGG 58.724 50.000 13.20 5.98 44.97 4.96
168 169 2.681344 GCGAACACCCTATTAAACTGGG 59.319 50.000 8.65 8.65 46.07 4.45
170 171 4.504858 AGAGCGAACACCCTATTAAACTG 58.495 43.478 0.00 0.00 0.00 3.16
173 174 6.053005 CCATAAGAGCGAACACCCTATTAAA 58.947 40.000 0.00 0.00 0.00 1.52
174 175 5.129815 ACCATAAGAGCGAACACCCTATTAA 59.870 40.000 0.00 0.00 0.00 1.40
175 176 4.652421 ACCATAAGAGCGAACACCCTATTA 59.348 41.667 0.00 0.00 0.00 0.98
177 178 3.039011 ACCATAAGAGCGAACACCCTAT 58.961 45.455 0.00 0.00 0.00 2.57
178 179 2.463752 ACCATAAGAGCGAACACCCTA 58.536 47.619 0.00 0.00 0.00 3.53
179 180 1.276622 ACCATAAGAGCGAACACCCT 58.723 50.000 0.00 0.00 0.00 4.34
182 183 3.370061 GGTGTTACCATAAGAGCGAACAC 59.630 47.826 7.07 7.07 43.66 3.32
183 184 3.592059 GGTGTTACCATAAGAGCGAACA 58.408 45.455 0.00 0.00 38.42 3.18
184 185 2.601763 CGGTGTTACCATAAGAGCGAAC 59.398 50.000 10.68 0.00 38.47 3.95
185 186 2.417651 CCGGTGTTACCATAAGAGCGAA 60.418 50.000 16.03 0.00 38.47 4.70
186 187 1.135527 CCGGTGTTACCATAAGAGCGA 59.864 52.381 16.03 0.00 38.47 4.93
187 188 1.134907 ACCGGTGTTACCATAAGAGCG 60.135 52.381 6.12 9.55 38.47 5.03
188 189 2.093869 TCACCGGTGTTACCATAAGAGC 60.094 50.000 32.74 0.00 38.47 4.09
189 190 3.880047 TCACCGGTGTTACCATAAGAG 57.120 47.619 32.74 3.78 38.47 2.85
190 191 4.710865 TGTATCACCGGTGTTACCATAAGA 59.289 41.667 35.96 22.43 38.47 2.10
191 192 5.013568 TGTATCACCGGTGTTACCATAAG 57.986 43.478 35.96 12.84 38.47 1.73
192 193 4.710865 TCTGTATCACCGGTGTTACCATAA 59.289 41.667 35.96 23.92 38.47 1.90
193 194 4.098349 GTCTGTATCACCGGTGTTACCATA 59.902 45.833 35.96 24.11 38.47 2.74
197 198 3.581024 TGTCTGTATCACCGGTGTTAC 57.419 47.619 34.23 34.23 36.69 2.50
198 199 3.827876 TCTTGTCTGTATCACCGGTGTTA 59.172 43.478 32.74 25.72 0.00 2.41
200 201 2.244695 TCTTGTCTGTATCACCGGTGT 58.755 47.619 32.74 22.03 0.00 4.16
202 203 3.323979 ACTTTCTTGTCTGTATCACCGGT 59.676 43.478 0.00 0.00 0.00 5.28
207 208 6.070767 CCCCTTCTACTTTCTTGTCTGTATCA 60.071 42.308 0.00 0.00 0.00 2.15
208 209 6.342111 CCCCTTCTACTTTCTTGTCTGTATC 58.658 44.000 0.00 0.00 0.00 2.24
209 210 5.338463 GCCCCTTCTACTTTCTTGTCTGTAT 60.338 44.000 0.00 0.00 0.00 2.29
210 211 4.020485 GCCCCTTCTACTTTCTTGTCTGTA 60.020 45.833 0.00 0.00 0.00 2.74
212 213 3.339141 GCCCCTTCTACTTTCTTGTCTG 58.661 50.000 0.00 0.00 0.00 3.51
213 214 2.028020 CGCCCCTTCTACTTTCTTGTCT 60.028 50.000 0.00 0.00 0.00 3.41
216 217 2.076863 CACGCCCCTTCTACTTTCTTG 58.923 52.381 0.00 0.00 0.00 3.02
217 218 1.697982 ACACGCCCCTTCTACTTTCTT 59.302 47.619 0.00 0.00 0.00 2.52
218 219 1.275573 GACACGCCCCTTCTACTTTCT 59.724 52.381 0.00 0.00 0.00 2.52
219 220 1.675116 GGACACGCCCCTTCTACTTTC 60.675 57.143 0.00 0.00 0.00 2.62
220 221 0.323957 GGACACGCCCCTTCTACTTT 59.676 55.000 0.00 0.00 0.00 2.66
221 222 1.980844 GGACACGCCCCTTCTACTT 59.019 57.895 0.00 0.00 0.00 2.24
222 223 3.709567 GGACACGCCCCTTCTACT 58.290 61.111 0.00 0.00 0.00 2.57
237 238 2.609610 GGTGGTGCCAGGTAGGGA 60.610 66.667 0.00 0.00 38.09 4.20
238 239 3.728373 GGGTGGTGCCAGGTAGGG 61.728 72.222 0.00 0.00 39.65 3.53
239 240 3.728373 GGGGTGGTGCCAGGTAGG 61.728 72.222 0.00 0.00 39.65 3.18
241 242 2.450699 TTGGGGTGGTGCCAGGTA 60.451 61.111 0.00 0.00 39.65 3.08
245 246 2.197324 GAAGTTGGGGTGGTGCCA 59.803 61.111 0.00 0.00 39.65 4.92
246 247 2.600470 GGAAGTTGGGGTGGTGCC 60.600 66.667 0.00 0.00 0.00 5.01
247 248 1.603739 GAGGAAGTTGGGGTGGTGC 60.604 63.158 0.00 0.00 0.00 5.01
248 249 0.036875 GAGAGGAAGTTGGGGTGGTG 59.963 60.000 0.00 0.00 0.00 4.17
249 250 0.401395 TGAGAGGAAGTTGGGGTGGT 60.401 55.000 0.00 0.00 0.00 4.16
251 252 1.699634 TCTTGAGAGGAAGTTGGGGTG 59.300 52.381 0.00 0.00 0.00 4.61
252 253 1.981495 CTCTTGAGAGGAAGTTGGGGT 59.019 52.381 0.00 0.00 38.48 4.95
263 264 1.743252 GTTGCGGGCCTCTTGAGAG 60.743 63.158 0.84 0.93 41.71 3.20
265 266 3.121030 CGTTGCGGGCCTCTTGAG 61.121 66.667 0.84 0.00 0.00 3.02
266 267 4.697756 CCGTTGCGGGCCTCTTGA 62.698 66.667 0.84 0.00 44.15 3.02
278 279 4.904590 TGGTTGGGCCCACCGTTG 62.905 66.667 28.70 0.00 44.64 4.10
284 285 0.178975 CAAACTAGTGGTTGGGCCCA 60.179 55.000 24.45 24.45 38.29 5.36
285 286 1.532604 GCAAACTAGTGGTTGGGCCC 61.533 60.000 17.59 17.59 38.29 5.80
286 287 0.539669 AGCAAACTAGTGGTTGGGCC 60.540 55.000 8.92 0.00 38.79 5.80
287 288 1.810755 GTAGCAAACTAGTGGTTGGGC 59.189 52.381 8.92 7.84 38.29 5.36
289 290 4.134563 ACTTGTAGCAAACTAGTGGTTGG 58.865 43.478 8.92 0.00 41.73 3.77
295 296 5.279056 GGAGAGTCACTTGTAGCAAACTAGT 60.279 44.000 0.00 0.00 43.72 2.57
296 297 5.047660 AGGAGAGTCACTTGTAGCAAACTAG 60.048 44.000 0.00 0.00 37.04 2.57
297 298 4.833380 AGGAGAGTCACTTGTAGCAAACTA 59.167 41.667 0.00 0.00 0.00 2.24
298 299 3.643792 AGGAGAGTCACTTGTAGCAAACT 59.356 43.478 0.00 0.00 0.00 2.66
300 301 3.305403 CGAGGAGAGTCACTTGTAGCAAA 60.305 47.826 0.00 0.00 0.00 3.68
301 302 2.229062 CGAGGAGAGTCACTTGTAGCAA 59.771 50.000 0.00 0.00 0.00 3.91
302 303 1.813178 CGAGGAGAGTCACTTGTAGCA 59.187 52.381 0.00 0.00 0.00 3.49
303 304 1.468395 GCGAGGAGAGTCACTTGTAGC 60.468 57.143 0.00 0.00 0.00 3.58
304 305 1.202087 CGCGAGGAGAGTCACTTGTAG 60.202 57.143 0.00 0.00 0.00 2.74
305 306 0.803117 CGCGAGGAGAGTCACTTGTA 59.197 55.000 0.00 0.00 0.00 2.41
306 307 1.581954 CGCGAGGAGAGTCACTTGT 59.418 57.895 0.00 0.00 0.00 3.16
324 325 1.686325 TTCCTGGATAGAGGTGCGGC 61.686 60.000 0.00 0.00 34.36 6.53
335 336 1.139853 GAGGCGATGTTCTTCCTGGAT 59.860 52.381 0.00 0.00 0.00 3.41
358 361 0.237761 GCTGCATCATGAGAATCGCC 59.762 55.000 0.09 0.00 38.61 5.54
362 365 1.939597 CGCGCTGCATCATGAGAAT 59.060 52.632 5.56 0.00 0.00 2.40
363 366 2.816360 GCGCGCTGCATCATGAGAA 61.816 57.895 26.67 0.00 45.45 2.87
424 427 0.103208 CAATCGTCGGGGAAGAGGAG 59.897 60.000 0.00 0.00 38.25 3.69
429 432 2.452813 CGCACAATCGTCGGGGAAG 61.453 63.158 0.00 0.00 0.00 3.46
442 445 2.335011 CGGAGTGAGTGACGCACA 59.665 61.111 20.95 0.00 36.66 4.57
473 476 2.510691 CGTACACCCCGTCATGCC 60.511 66.667 0.00 0.00 0.00 4.40
515 518 0.672401 ACGGCCATTTCGTCGAACAT 60.672 50.000 7.29 2.28 35.87 2.71
564 567 0.518636 CAACACGCTGACCTGATTGG 59.481 55.000 0.00 0.00 42.93 3.16
581 591 1.754745 GAGACCAGGGACAGCACAA 59.245 57.895 0.00 0.00 0.00 3.33
586 596 2.104170 GTCTTAGGAGACCAGGGACAG 58.896 57.143 0.00 0.00 45.34 3.51
650 660 5.759273 CCAGCTTCTAGACGTACTACTATGT 59.241 44.000 0.00 0.00 0.00 2.29
651 661 5.759273 ACCAGCTTCTAGACGTACTACTATG 59.241 44.000 0.00 0.00 0.00 2.23
652 662 5.927819 ACCAGCTTCTAGACGTACTACTAT 58.072 41.667 0.00 0.00 0.00 2.12
653 663 5.350504 ACCAGCTTCTAGACGTACTACTA 57.649 43.478 0.00 0.00 0.00 1.82
655 665 5.115480 ACTACCAGCTTCTAGACGTACTAC 58.885 45.833 0.00 0.00 0.00 2.73
732 855 4.646572 TCTTCTCTTTTCAGGAAGGCTTC 58.353 43.478 18.98 18.98 37.59 3.86
903 1032 5.109210 CGTGCTGAAACTTATCTATCACCA 58.891 41.667 0.00 0.00 0.00 4.17
953 1082 1.148310 CGGACGTTGCAAAGAGTGAT 58.852 50.000 19.51 0.00 0.00 3.06
1095 3721 3.593834 TGCTACTGCAGATATGGCG 57.406 52.632 23.35 1.22 45.31 5.69
1120 3746 3.906660 AGACGAATCGGCTCACAAA 57.093 47.368 4.61 0.00 44.38 2.83
1173 3802 0.389166 GCTTCTCTCCCGACTGTGTG 60.389 60.000 0.00 0.00 0.00 3.82
1174 3803 0.827925 TGCTTCTCTCCCGACTGTGT 60.828 55.000 0.00 0.00 0.00 3.72
1307 8643 0.249489 CCAGTAGCCTCGGTACATGC 60.249 60.000 0.00 0.00 38.76 4.06
1471 8822 1.071385 CTCCAAGCTCTCAACCACACT 59.929 52.381 0.00 0.00 0.00 3.55
1479 8830 1.587043 CGACGTCCTCCAAGCTCTCA 61.587 60.000 10.58 0.00 0.00 3.27
1521 8872 0.243636 CGCATCCACCCAAAAGAACC 59.756 55.000 0.00 0.00 0.00 3.62
1543 8894 0.741915 TATGGTCGACGCAGCATACA 59.258 50.000 9.92 0.00 36.00 2.29
1719 9073 0.396139 CCTTGCATACATGGGCCACT 60.396 55.000 9.28 0.00 37.44 4.00
1747 9101 6.265196 AGAATCGAAGAGAAGTATGAGCTGAT 59.735 38.462 0.00 0.00 43.63 2.90
1756 9110 5.048013 TCAAGTGCAGAATCGAAGAGAAGTA 60.048 40.000 0.00 0.00 43.63 2.24
1777 9131 2.026822 GGCAGAAGGAGTCTCCATTCAA 60.027 50.000 21.26 0.00 39.61 2.69
1811 9165 2.002127 CGCAAGAAGCTCCGATCAC 58.998 57.895 0.00 0.00 42.61 3.06
1929 9289 0.250209 GCCGGCTGATGATGATCACT 60.250 55.000 22.15 0.00 34.71 3.41
2208 9568 2.926838 GACGTTCCTCTCAGCAAATCTC 59.073 50.000 0.00 0.00 0.00 2.75
2391 9751 0.915364 GATCTCCAAGCCTCACCCTT 59.085 55.000 0.00 0.00 0.00 3.95
2483 9843 5.278266 GGAACGAAATGAACAAATGAGGTGA 60.278 40.000 0.00 0.00 0.00 4.02
2512 9872 2.242043 CAAACCTGGAGCACCATTTCT 58.758 47.619 2.38 0.00 45.87 2.52
2535 9895 1.700186 GACAGGGGAGGACTCTGTTTT 59.300 52.381 0.93 0.00 41.24 2.43
2682 10054 8.196378 AGGTTAAAGATACATATGGGAGACTC 57.804 38.462 7.80 0.00 0.00 3.36
2780 10155 9.263446 ACTTTGACTACAGATATGTACCCTAAA 57.737 33.333 0.00 0.00 0.00 1.85
2781 10156 8.834004 ACTTTGACTACAGATATGTACCCTAA 57.166 34.615 0.00 0.00 0.00 2.69
2782 10157 8.834004 AACTTTGACTACAGATATGTACCCTA 57.166 34.615 0.00 0.00 0.00 3.53
2783 10158 7.735326 AACTTTGACTACAGATATGTACCCT 57.265 36.000 0.00 0.00 0.00 4.34
2784 10159 8.910944 TCTAACTTTGACTACAGATATGTACCC 58.089 37.037 0.00 0.00 0.00 3.69
2832 10217 5.417754 TCATAAATGCATGCCTTCCAAAA 57.582 34.783 16.68 0.00 0.00 2.44
2833 10218 5.417754 TTCATAAATGCATGCCTTCCAAA 57.582 34.783 16.68 2.41 0.00 3.28
2866 10251 5.624900 CCACAATTCAAACATCTTACACACG 59.375 40.000 0.00 0.00 0.00 4.49
2884 10269 4.657814 AGTTAATGGACAGTCCCACAAT 57.342 40.909 17.59 0.40 39.34 2.71
2929 10315 6.084326 AGTTATTTTGAGTCCGCAAACAAT 57.916 33.333 0.00 0.00 37.48 2.71
2937 10323 4.213270 TGCACTGAAGTTATTTTGAGTCCG 59.787 41.667 0.00 0.00 0.00 4.79
2939 10325 7.985634 TTTTGCACTGAAGTTATTTTGAGTC 57.014 32.000 0.00 0.00 0.00 3.36
2953 10339 6.602803 TCTTGCTTGGATATATTTTGCACTGA 59.397 34.615 0.00 0.00 0.00 3.41
2983 11014 5.302855 GTGTCGAACACTATTCATCATCG 57.697 43.478 9.86 0.00 45.27 3.84
2997 11028 1.499049 GTCCCTCTGTTGTGTCGAAC 58.501 55.000 0.00 0.00 0.00 3.95
3003 11034 2.862541 TGATTTGGTCCCTCTGTTGTG 58.137 47.619 0.00 0.00 0.00 3.33
3004 11035 3.074390 TCATGATTTGGTCCCTCTGTTGT 59.926 43.478 0.00 0.00 0.00 3.32
3087 11118 5.924356 TCATATATGTTTCGCTTCTTCCCA 58.076 37.500 12.42 0.00 0.00 4.37
3088 11119 6.861065 TTCATATATGTTTCGCTTCTTCCC 57.139 37.500 12.42 0.00 0.00 3.97
3104 11135 5.511373 CCCAAACAGCCTCGAGATTCATATA 60.511 44.000 15.71 0.00 0.00 0.86
3149 12147 1.323271 TGGGTAGCTCAGCTCTTCGG 61.323 60.000 0.00 0.00 40.44 4.30
3151 12149 2.998316 AATGGGTAGCTCAGCTCTTC 57.002 50.000 0.00 0.00 40.44 2.87
3176 12174 1.272212 GACGCCATGGTGGTTTCAAAT 59.728 47.619 28.34 5.33 40.46 2.32
3177 12175 0.671251 GACGCCATGGTGGTTTCAAA 59.329 50.000 28.34 0.00 40.46 2.69
3193 12202 2.439701 TAGGAGGACGGCAGGACG 60.440 66.667 0.00 0.00 40.31 4.79
3194 12203 0.468400 ATCTAGGAGGACGGCAGGAC 60.468 60.000 0.00 0.00 0.00 3.85
3195 12204 1.074084 CTATCTAGGAGGACGGCAGGA 59.926 57.143 0.00 0.00 0.00 3.86
3196 12205 1.202952 ACTATCTAGGAGGACGGCAGG 60.203 57.143 0.00 0.00 0.00 4.85
3197 12206 2.156098 GACTATCTAGGAGGACGGCAG 58.844 57.143 0.00 0.00 0.00 4.85
3198 12207 1.493446 TGACTATCTAGGAGGACGGCA 59.507 52.381 0.00 0.00 0.00 5.69
3199 12208 1.881324 GTGACTATCTAGGAGGACGGC 59.119 57.143 0.00 0.00 0.00 5.68
3200 12209 2.158652 TGGTGACTATCTAGGAGGACGG 60.159 54.545 0.00 0.00 0.00 4.79
3208 12217 3.570550 GGTAGCCTGTGGTGACTATCTAG 59.429 52.174 0.00 0.00 0.00 2.43
3209 12218 3.053170 TGGTAGCCTGTGGTGACTATCTA 60.053 47.826 0.00 0.00 0.00 1.98
3232 12274 0.818296 ACGATCAAGAGGAGTTCCGG 59.182 55.000 0.00 0.00 42.08 5.14
3245 12287 0.321475 TGCCAGTCAATGCACGATCA 60.321 50.000 0.00 0.00 31.31 2.92
3262 12327 3.135530 AGGACTATTTGATCAGGACCTGC 59.864 47.826 17.33 4.34 0.00 4.85
3263 12328 4.406972 TGAGGACTATTTGATCAGGACCTG 59.593 45.833 15.99 15.99 0.00 4.00
3264 12329 4.624913 TGAGGACTATTTGATCAGGACCT 58.375 43.478 0.00 3.50 0.00 3.85
3265 12330 5.359194 TTGAGGACTATTTGATCAGGACC 57.641 43.478 0.00 0.00 0.00 4.46
3266 12331 5.586643 GGTTTGAGGACTATTTGATCAGGAC 59.413 44.000 0.00 0.00 0.00 3.85
3267 12332 5.488919 AGGTTTGAGGACTATTTGATCAGGA 59.511 40.000 0.00 0.00 0.00 3.86
3268 12333 5.749462 AGGTTTGAGGACTATTTGATCAGG 58.251 41.667 0.00 0.00 0.00 3.86
3269 12334 6.881065 TGAAGGTTTGAGGACTATTTGATCAG 59.119 38.462 0.00 0.00 0.00 2.90
3270 12335 6.655003 GTGAAGGTTTGAGGACTATTTGATCA 59.345 38.462 0.00 0.00 0.00 2.92
3271 12336 6.881602 AGTGAAGGTTTGAGGACTATTTGATC 59.118 38.462 0.00 0.00 0.00 2.92
3272 12337 6.784031 AGTGAAGGTTTGAGGACTATTTGAT 58.216 36.000 0.00 0.00 0.00 2.57
3273 12338 6.187727 AGTGAAGGTTTGAGGACTATTTGA 57.812 37.500 0.00 0.00 0.00 2.69
3274 12339 5.120830 CGAGTGAAGGTTTGAGGACTATTTG 59.879 44.000 0.00 0.00 0.00 2.32
3275 12340 5.221661 ACGAGTGAAGGTTTGAGGACTATTT 60.222 40.000 0.00 0.00 0.00 1.40
3276 12341 4.283722 ACGAGTGAAGGTTTGAGGACTATT 59.716 41.667 0.00 0.00 0.00 1.73
3277 12342 3.833070 ACGAGTGAAGGTTTGAGGACTAT 59.167 43.478 0.00 0.00 0.00 2.12
3307 12372 1.383109 ATGGCATCGACCTCTCCCA 60.383 57.895 0.00 0.00 0.00 4.37
3343 12408 4.878397 CCCACAAGTGAATCCAGATTAGTC 59.122 45.833 0.94 0.00 0.00 2.59
3347 12412 2.225091 TGCCCACAAGTGAATCCAGATT 60.225 45.455 0.94 0.00 0.00 2.40
3385 12450 5.236478 ACAATGAGGCTTTAAATCGATACCG 59.764 40.000 0.00 0.00 37.07 4.02
3395 12460 3.673052 GCGATGCAACAATGAGGCTTTAA 60.673 43.478 0.00 0.00 0.00 1.52
3423 12488 0.681564 CCTCTACCGTGTGAGGCTCT 60.682 60.000 16.72 0.00 42.62 4.09
3456 12521 1.729586 TTCCTCTAGCACAGGTGGTT 58.270 50.000 9.60 0.00 41.96 3.67
3469 12534 3.342477 GGGGCAGGGCTTTCCTCT 61.342 66.667 0.00 0.00 46.12 3.69
3496 12561 1.227823 TGGCAACCCAGTTGTCTCG 60.228 57.895 12.74 0.00 46.71 4.04
3498 12563 1.152756 GGTGGCAACCCAGTTGTCT 60.153 57.895 12.74 0.00 46.71 3.41
3512 12577 0.539051 CTCTTCTAGGGCAGTGGTGG 59.461 60.000 0.00 0.00 0.00 4.61
3530 12794 0.908198 GGGAGCAGGAGTGTGATTCT 59.092 55.000 0.00 0.00 0.00 2.40
3531 12795 0.107459 GGGGAGCAGGAGTGTGATTC 60.107 60.000 0.00 0.00 0.00 2.52
3592 12856 1.691976 TCCTTATACCTGCACCGATGG 59.308 52.381 0.00 0.00 0.00 3.51
3594 12858 3.239449 TGATCCTTATACCTGCACCGAT 58.761 45.455 0.00 0.00 0.00 4.18
3599 12863 6.470278 CATTGATCTGATCCTTATACCTGCA 58.530 40.000 14.71 0.00 0.00 4.41
3601 12865 6.877855 CACCATTGATCTGATCCTTATACCTG 59.122 42.308 14.71 1.86 0.00 4.00
3604 12868 7.386299 GTGTCACCATTGATCTGATCCTTATAC 59.614 40.741 14.71 5.70 33.11 1.47
3607 12871 5.189539 TGTGTCACCATTGATCTGATCCTTA 59.810 40.000 14.71 1.47 33.11 2.69
3613 12877 4.067192 CAAGTGTGTCACCATTGATCTGA 58.933 43.478 10.33 0.00 34.49 3.27
3616 12880 3.189287 GTCCAAGTGTGTCACCATTGATC 59.811 47.826 15.35 7.10 34.49 2.92
3630 12894 0.967380 GAGGGGCCAATGTCCAAGTG 60.967 60.000 4.39 0.00 38.32 3.16
3649 12913 2.125673 CTCCCGTACCCGCACTTG 60.126 66.667 0.00 0.00 0.00 3.16
3650 12914 1.262640 ATTCTCCCGTACCCGCACTT 61.263 55.000 0.00 0.00 0.00 3.16
3651 12915 1.262640 AATTCTCCCGTACCCGCACT 61.263 55.000 0.00 0.00 0.00 4.40
3652 12916 0.392060 AAATTCTCCCGTACCCGCAC 60.392 55.000 0.00 0.00 0.00 5.34
3653 12917 0.325602 AAAATTCTCCCGTACCCGCA 59.674 50.000 0.00 0.00 0.00 5.69
3654 12918 2.314323 TAAAATTCTCCCGTACCCGC 57.686 50.000 0.00 0.00 0.00 6.13
3655 12919 4.062677 TCATAAAATTCTCCCGTACCCG 57.937 45.455 0.00 0.00 0.00 5.28
3656 12920 4.820173 CCTTCATAAAATTCTCCCGTACCC 59.180 45.833 0.00 0.00 0.00 3.69
3657 12921 4.820173 CCCTTCATAAAATTCTCCCGTACC 59.180 45.833 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.